cartVersion cartVersion cartVersion cartVersion 0 -3 0 0 0 0 0 0 0 0 0 cartVersion cartVersion cartVersion 0 cartVersion 3 dbSnp155Composite dbSNP 155 bed 3 Short Genetic Variants from dbSNP release 155 3 0.8 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$

Description

\

\ This track shows short genetic variants\ (up to approximately 50 base pairs) from\ dbSNP\ build 155:\ single-nucleotide variants (SNVs),\ small insertions, deletions, and complex deletion/insertions (indels),\ relative to the reference genome assembly.\ Most variants in dbSNP are rare, not true polymorphisms,\ and some variants are known to be pathogenic.\

\ For hg38 (GRCh38), approximately 998 million distinct variants\ (RefSNP clusters with rs# ids)\ have been mapped to more than 1.06 billion genomic locations\ including alternate haplotype and fix patch sequences.\ dbSNP remapped variants from hg38 to hg19 (GRCh37);\ approximately 981 million distinct variants were mapped to\ more than 1.02 billion genomic locations\ including alternate haplotype and fix patch sequences (not\ all of which are included in UCSC's hg19).\

\

\ This track includes four subtracks of variants:\

\

\

\ A fifth subtrack highlights coordinate ranges to which dbSNP mapped a variant but with genomic\ coordinates that are not internally consistent, i.e. different coordinate ranges were provided\ when describing different alleles. This can occur due to a bug with mapping variants from one\ assembly sequence to another when there is an indel difference between the assembly sequences:\

\

\ \

Interpreting and Configuring the Graphical Display

\

\ SNVs and pure deletions are displayed as boxes covering the affected base(s).\ Pure insertions are drawn as single-pixel tickmarks between\ the base before and the base after the insertion.\

\ Insertions and/or deletions in repetitive regions may be represented by a half-height box\ showing uncertainty in placement, followed by a full-height box showing the number of deleted\ bases, or a full-height tickmark to indicate an insertion.\ When an insertion or deletion falls in a repetitive region, the placement may be ambiguous.\ For example, if the reference genome contains "TAAAG" but some\ individuals have "TAAG" at the same location, then the variant is a deletion of a single\ A relative to the reference genome.\ However, which A was deleted? There is no way to tell whether the first, second or third A\ was removed.\ Different variant mapping tools may place the deletion at different bases in the reference genome.\ To reduce errors in merging variant calls made with different left vs. right biases,\ dbSNP made a major change in its representation of deletion/insertion variants in build 152.\ Now, instead of assigning a single-base genomic location at one of the A's,\ dbSNP expands the coordinates to encompass the whole repetitive region,\ so the variant is represented as a deletion of 3 A's combined with an insertion of 2 A's.\ In the track display, there will be a half-height box covering the first two A's,\ followed by a full-height box covering the third A, to show a net loss of one base\ but an uncertain placement within the three A's.\

\

\ Variants are colored according to functional effect on genes annotated by dbSNP:\

\ \

Protein-altering variants and splice site variants are\ red.\
Synonymous codon variants are\ green.\
\ Non-coding transcript or Untranslated Region (UTR) variants are\ blue.\

\

\ On the track controls page, several variant properties can be included or excluded from\ the item labels:\ rs# identifier assigned by dbSNP,\ reference/alternate alleles,\ major/minor alleles (when available) and\ minor allele frequency (when available).\ Allele frequencies are reported independently by the project\ (some of which may have overlapping sets of samples):\

\ \ The project from which to take allele frequency data defaults to 1000 Genomes\ but can be set to any of those projects.\

\

\ Using the track controls, variants can be filtered by\ \

\

\ \ \

Interesting and anomalous conditions noted by UCSC

\

\ While processing the information downloaded from dbSNP,\ UCSC annotates some properties of interest.\ These are noted on the item details page,\ and may be useful to include or exclude affected variants.\ \

\ Some are purely informational:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
keyword in data file (dbSnp155.bb)# in hg19# in hg38description
clinvar627817630503Variant is in ClinVar.\
clinvarBenign275541276409Variant is in ClinVar with clinical significance of benign and/or likely benign.\
clinvarConflicting1692516834Variant is in ClinVar with reports of both benign and pathogenic significance.\
clinvarPathogenic5637356475Variant is in ClinVar with clinical significance of pathogenic and/or likely pathogenic.\
commonAll1490450315862783Variant is "common", i.e. has a Minor Allele Frequency of at least 1% in all projects reporting frequencies.\
commonSome5963386462095091Variant is "common", i.e. has a Minor Allele Frequency of at least 1% in some, but not all, projects reporting frequencies.\
diffMajor1274873313073288Different frequency sources have different major alleles.\
overlapDiffClass198945442207101421This variant overlaps another variant with a different type/class.\
overlapSameClass2928195830301090This variant overlaps another with the same type/class but different start/end.\
rareAll906113910938985356Variant is "rare", i.e. has a Minor Allele Frequency of less than 1% in all projects reporting frequencies, or has no frequency data.\
rareSome950843271985217664Variant is "rare", i.e. has a Minor Allele Frequency of less than 1% in some, but not all, projects reporting frequencies, or has no frequency data.\
revStrand55408646770772Alleles are displayed on the + strand at the current position. dbSNP's alleles are displayed on the + strand of a different assembly sequence, so dbSNP's variant page shows alleles that are reverse-complemented with respect to the alleles displayed above.\
\ \

\ while others may indicate that the reference genome contains a rare variant or sequencing issue:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
keyword in data file (dbSnp155.bb)# in hg19# in hg38description
refIsAmbiguous1941The reference genome allele contains an IUPAC ambiguous base (e.g. 'R' for 'A or G', or 'N' for 'any base').\
refIsMinor1495021215386394The reference genome allele is not the major allele in at least one project.\
refIsRare793081822757The reference genome allele is rare (i.e. allele frequency < 1%).\
refIsSingleton694310712794The reference genome allele has never been observed in a population sequencing project reporting frequencies.\
refMismatch118The reference genome allele reported by dbSNP differs from the GenBank assembly sequence. This is very rare and in all cases observed so far, the GenBank assembly has an 'N' while the RefSeq assembly used by dbSNP has a less ambiguous character such as 'R'.\
\ \

\ and others may indicate an anomaly or problem with the variant data:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
keyword in data file (dbSnp155.bb)# in hg19# in hg38description
altIsAmbiguous52945361At least one alternate allele contains an IUPAC ambiguous base (e.g. 'R' for 'A or G'). For alleles containing more than one ambiguous base, this may create a combinatoric explosion of possible alleles.\
classMismatch1328918475Variation class/type is inconsistent with alleles mapped to this genome assembly.\
clusterError373258459130This variant has the same start, end and class as another variant; they probably should have been merged into one variant.\
freqIncomplete00At least one project reported counts for only one allele which implies that at least one allele is missing from the report; that project's frequency data are ignored.\
freqIsAmbiguous43324399At least one allele reported by at least one project that reports frequencies contains an IUPAC ambiguous base.\
freqNotMapped11499721141935At least one project reported allele frequencies relative to a different assembly; However, dbSNP does not include a mapping of this variant to that assembly, which implies a problem with mapping the variant across assemblies. The mapping on this assembly may have an issue; evaluate carefully vs. original submissions, which you can view by clicking through to dbSNP above.\
freqNotRefAlt74139110646At least one allele reported by at least one project that reports frequencies does not match any of the reference or alternate alleles listed by dbSNP.\
multiMap799777286666This variant has been mapped to more than one distinct genomic location.\
otherMapErr91260195051At least one other mapping of this variant has erroneous coordinates. The mapping(s) with erroneous coordinates are excluded from this track and are included in the Map Err subtrack. Sometimes despite this mapping having legal coordinates, there may still be an issue with this mapping's coordinates and alleles; you may want to click through to dbSNP to compare the initial submission's coordinates and alleles. In hg19, 55454 distinct rsIDs are affected; in hg38, 86636. \
\ \

Data Sources and Methods

\

\ dbSNP has collected genetic variant reports from researchers worldwide for \ more than 20 years.\ Since the advent of next-generation sequencing methods and the population sequencing efforts\ that they enable, dbSNP has grown exponentially, requiring a new data schema, computational pipeline,\ web infrastructure, and download files.\ (Holmes et al.)\ The same challenges of exponential growth affected UCSC's presentation of dbSNP variants,\ so we have taken the opportunity to change our internal representation and import pipeline.\ Most notably, flanking sequences are no longer provided by dbSNP,\ because most submissions have been genomic variant calls in VCF format as opposed to\ independent sequences.\

\

\ We downloaded JSON files available from dbSNP at\ http://ftp.ncbi.nlm.nih.gov/snp/archive/b155/JSON/,\ extracted a subset of the information about each variant, and collated\ it into a bigBed file using the\ bigDbSnp.as schema with the information\ necessary for filtering and displaying the variants,\ as well as a separate file containing more detailed information to be\ displayed on each variant's details page\ (dbSnpDetails.as schema).\ \

Data Access

\

\ Note: It is not recommeneded to use LiftOver to convert SNPs between assemblies,\ and more information about how to convert SNPs between assemblies can be found on the following\ FAQ entry.

\

\ Since dbSNP has grown to include over 1 billion variants, the size of the All dbSNP (155)\ subtrack can cause the\ Table Browser and\ Data Integrator\ to time out, leading to a blank page or truncated output,\ unless queries are restricted to a chromosomal region, to particular defined regions, to a specific set \ of rs# IDs (which can be pasted/uploaded into the Table Browser),\ or to one of the subset tracks such as Common (~15 million variants) or ClinVar (~0.8M variants).\

\ For automated analysis, the track data files can be downloaded from the downloads server for\ hg19 and\ hg38.\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
fileformatsubtrack
dbSnp155.bbhg19hg38bigDbSnp (bigBed4+13)All dbSNP (155)
dbSnp155ClinVar.bbhg19hg38bigDbSnp (bigBed4+13)ClinVar dbSNP (155)
dbSnp155Common.bbhg19hg38bigDbSnp (bigBed4+13)Common dbSNP (155)
dbSnp155Mult.bbhg19hg38bigDbSnp (bigBed4+13)Mult. dbSNP (155)
dbSnp155BadCoords.bbhg19hg38bigBed4Map Err (155)
\ dbSnp155Details.tab.gz\ gzip-compressed tab-separated textDetailed variant properties, independent of genome assembly version
\

\

\ Several utilities for working with bigBed-formatted binary files can be downloaded\ here.\ Run a utility with no arguments to see a brief description of the utility and its options.\

\

\ \

Example: retrieve all variants in the region chr1:200001-200400

\ \ 
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/snp/dbSnp155.bb -chrom=chr1 -start=200000 -end=200400 stdout
\ \

Example: retrieve variant rs6657048

\ \ 
bigBedNamedItems dbSnp155.bb rs6657048 stdout
\ \

Example: retrieve all variants with rs# IDs in file myIds.txt

\ \ 
bigBedNamedItems -nameFile dbSnp155.bb myIds.txt dbSnp155.myIds.bed
\ \

\ The columns in the bigDbSnp/bigBed files and dbSnp155Details.tab.gz file are described in\ bigDbSnp.as and\ dbSnpDetails.as respectively.\ \ For columns that contain lists of allele frequency data, the order of projects\ providing the data listed is as follows:\

    \
  1. \ 1000Genomes\
    2. \
  2. \ dbGaP_PopFreq\
    3. \
  3. \ TOPMED\
    4. \
  4. \ KOREAN\
    5. \
  5. \ SGDP_PRJ\
    6. \
  6. \ Qatari\
    7. \
  7. \ NorthernSweden\
    8. \
  8. \ Siberian\
    9. \
  9. \ TWINSUK\
    10. \
  10. \ TOMMO\
    11. \
  11. \ ALSPAC\
    12. \
  12. \ GENOME_DK\
    13. \
  13. \ GnomAD\
    14. \
  14. \ GoNL\
    15. \
  15. \ Estonian\
    16. \
  16. \ Vietnamese\
    17. \
  17. \ Korea1K\
    18. \
  18. \ HapMap\
    19. \
  19. \ PRJEB36033\
    20. \
  20. \ HGDP_Stanford\
    21. \
  21. \ Daghestan\
    22. \
  22. \ PAGE_STUDY\
    23. \
  23. \ Chileans\
    24. \
  24. \ MGP\
    25. \
  25. \ PRJEB37584\
    26. \
  26. \ GoESP\
    27. \
  27. \ ExAC\
    28. \
  28. \ GnomAD_exomes\
    29. \
  29. \ FINRISK\
    30. \
  30. \ PharmGKB\
    31. \
  31. \ PRJEB37766\
    32. \
\ The functional effect (maxFuncImpact) for each variant contains the\ Sequence\ Ontology (SO) ID for the greatest functional impact on the gene. This field\ contains a 0 when no SO terms are annotated on the variant.\

\ UCSC also has an\ API\ that can be used to retrieve values from a particular chromosome range.\

\ A list of rs# IDs can be pasted/uploaded in the\ Variant Annotation Integrator\ tool to find out which genes (if any) the variants are located in,\ as well as functional effect such as intron, coding-synonymous, missense, frameshift, etc.\

\ Please refer to our searchable\ mailing list archives\ for more questions and example queries, or our\ Data Access FAQ\ for more information.\

\ \

References

\ \

\ Holmes JB, Moyer E, Phan L, Maglott D, Kattman B.\ \ SPDI: Data Model for Variants and Applications at NCBI.\ Bioinformatics. 2019 Nov 18;.\ PMID: 31738401\

\

\ Sayers EW, Agarwala R, Bolton EE, Brister JR, Canese K, Clark K, Connor R, Fiorini N, Funk K,\ Hefferon T et al.\ \ Database resources of the National Center for Biotechnology Information.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D23-D28.\ PMID: 30395293; PMC: PMC6323993\

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122;\ PMC: PMC29783\

\ \ varRep 1 compositeTrack on\ group varRep\ longLabel Short Genetic Variants from dbSNP release 155\ maxWindowCoverage 4000000\ priority 0.8\ shortLabel dbSNP 155\ subGroup1 view Views variants=Variants errs=Mapping_Errors\ track dbSnp155Composite\ type bed 3\ url https://www.ncbi.nlm.nih.gov/snp/$$\ urlLabel dbSNP:\ visibility pack\ dbSnp155ViewErrs Mapping Errors bed 3 Short Genetic Variants from dbSNP release 155 1 0.8 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 longLabel Short Genetic Variants from dbSNP release 155\ parent dbSnp155Composite\ shortLabel Mapping Errors\ track dbSnp155ViewErrs\ view errs\ visibility dense\ dbSnp155ViewVariants Variants bigDbSnp Short Genetic Variants from dbSNP release 155 1 0.8 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 classFilterType multipleListOr\ classFilterValues snv,mnv,ins,del,delins,identity\ detailsTabUrls _dataOffset=/gbdb/hgFixed/dbSnp/dbSnp155Details.tab.gz\ freqSourceOrder 1000Genomes,dbGaP_PopFreq,TOPMED,KOREAN,SGDP_PRJ,Qatari,NorthernSweden,Siberian,TWINSUK,TOMMO,ALSPAC,GENOME_DK,GnomAD,GoNL,Estonian,Vietnamese,Korea1K,HapMap,PRJEB36033,HGDP_Stanford,Daghestan,PAGE_STUDY,Chileans,MGP,PRJEB37584,GoESP,ExAC,GnomAD_exomes,FINRISK,PharmGKB,PRJEB37766\ longLabel Short Genetic Variants from dbSNP release 155\ maxFuncImpactFilterLabel Greatest functional impact on gene\ maxFuncImpactFilterType multipleListOr\ maxFuncImpactFilterValues 0|(not annotated),0865|frameshift,1587|stop_gained,1574|splice_acceptor_variant,1575|splice_donor_variant,1821|inframe_insertion,1583|missense_variant,1590|terminator_codon_variant,1819|synonymous_variant,1580|coding_sequence_variant,1623|5_prime_UTR_variant,1624|3_prime_UTR_variant,1619|nc_transcript_variant,2|genic_upstream_transcript_variant,1986|upstream_transcript_variant,2152|genic_downstream_transcript_variant,1987|downstream_transcript_variant,1627|intron_variant\ parent dbSnp155Composite\ shortLabel Variants\ track dbSnp155ViewVariants\ type bigDbSnp\ ucscNotesFilterType multipleListOr\ ucscNotesFilterValues altIsAmbiguous|Alternate allele contains IUPAC ambiguous base(s),classMismatch|Variant class/type is inconsistent with allele sizes,clinvar|Present in ClinVar,clinvarBenign|ClinVar significance of benign and/or likely benign,clinvarConflicting|ClinVar includes both benign and pathogenic reports,clinvarPathogenic|ClinVar significance of pathogenic and/or likely pathogenic,clusterError|Overlaps a variant with the same type/class and position,commonAll|MAF >= 1% in all projects that report frequencies,commonSome|MAF >= 1% in at least one project that reports frequencies,diffMajor|Different projects report different major alleles,freqIncomplete|Frequency reported with incomplete allele data,freqIsAmbiguous|Frequency reported for allele with IUPAC ambiguous base(s),freqNotMapped|Frequency reported on different assembly but not mapped by dbSNP,freqNotRefAlt|Reference genome allele is not major allele in at least one project,multiMap|Variant is placed in more than one genomic position,otherMapErr|Another mapping of this variant has illegal coords (indel mapping error?),overlapDiffClass|Variant overlaps other variant(s) of different type/class,overlapSameClass|Variant overlaps other variant(s) of same type/class but different position,rareAll|MAF < 1% in all projects that report frequencies (or no frequency data),rareSome|MAF < 1% in at least one project that reports frequencies,refIsAmbiguous|Reference genome allele contains IUPAC ambiguous base(s),refIsMinor|Reference genome allele is minor allele in at least one project that reports frequencies,refIsRare|Reference genome allele frequency is <1% in at least one project,refIsSingleton|Reference genome frequency is 0 in all projects that report frequencies,refMismatch|Reference allele mismatches reference genome sequence,revStrand|Variant maps to opposite strand relative to dbSNP's preferred top-level placement\ view variants\ visibility dense\ dbSnp153Composite dbSNP 153 bed 6 + Short Genetic Variants from dbSNP release 153 3 0.908 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$

Description

\

\ This track shows short genetic variants\ (up to approximately 50 base pairs) from\ dbSNP\ build 153:\ single-nucleotide variants (SNVs),\ small insertions, deletions, and complex deletion/insertions (indels),\ relative to the reference genome assembly.\ Most variants in dbSNP are rare, not true polymorphisms,\ and some variants are known to be pathogenic.\

\ For hg38 (GRCh38), approximately 667 million distinct variants\ (RefSNP clusters with rs# ids)\ have been mapped to more than 702 million genomic locations\ including alternate haplotype and fix patch sequences.\ dbSNP remapped variants from hg38 to hg19 (GRCh37);\ approximately 658 million distinct variants were mapped to\ more than 683 million genomic locations\ including alternate haplotype and fix patch sequences (not\ all of which are included in UCSC's hg19).\

\

\ This track includes four subtracks of variants:\

\

\

\ A fifth subtrack highlights coordinate ranges to which dbSNP mapped a variant but with genomic\ coordinates that are not internally consistent, i.e. different coordinate ranges were provided\ when describing different alleles. This can occur due to a bug with mapping variants from one\ assembly sequence to another when there is an indel difference between the assembly sequences:\

\

\ \

Interpreting and Configuring the Graphical Display

\

\ SNVs and pure deletions are displayed as boxes covering the affected base(s).\ Pure insertions are drawn as single-pixel tickmarks between\ the base before and the base after the insertion.\

\ Insertions and/or deletions in repetitive regions may be represented by a half-height box\ showing uncertainty in placement, followed by a full-height box showing the number of deleted\ bases, or a full-height tickmark to indicate an insertion.\ When an insertion or deletion falls in a repetitive region, the placement may be ambiguous.\ For example, if the reference genome contains "TAAAG" but some\ individuals have "TAAG" at the same location, then the variant is a deletion of a single\ A relative to the reference genome.\ However, which A was deleted? There is no way to tell whether the first, second or third A\ was removed.\ Different variant mapping tools may place the deletion at different bases in the reference genome.\ To reduce errors in merging variant calls made with different left vs. right biases,\ dbSNP made a major change in its representation of deletion/insertion variants in build 152.\ Now, instead of assigning a single-base genomic location at one of the A's,\ dbSNP expands the coordinates to encompass the whole repetitive region,\ so the variant is represented as a deletion of 3 A's combined with an insertion of 2 A's.\ In the track display, there will be a half-height box covering the first two A's,\ followed by a full-height box covering the third A, to show a net loss of one base\ but an uncertain placement within the three A's.\

\

\ Variants are colored according to functional effect on genes annotated by dbSNP:\

\ \

Protein-altering variants and splice site variants are\ red.\
Synonymous codon variants are\ green.\
\ Non-coding transcript or Untranslated Region (UTR) variants are\ blue.\

\

\ On the track controls page, several variant properties can be included or excluded from\ the item labels:\ rs# identifier assigned by dbSNP,\ reference/alternate alleles,\ major/minor alleles (when available) and\ minor allele frequency (when available).\ Allele frequencies are reported independently by twelve projects\ (some of which may have overlapping sets of samples):\

\ The project from which to take allele frequency data defaults to 1000 Genomes\ but can be set to any of those projects.\

\

\ Using the track controls, variants can be filtered by\ \

\

\ \ \

Interesting and anomalous conditions noted by UCSC

\

\ While processing the information downloaded from dbSNP,\ UCSC annotates some properties of interest.\ These are noted on the item details page,\ and may be useful to include or exclude affected variants.\

\ Some are purely informational:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
keyword in data file (dbSnp153.bb)# in hg19# in hg38description
clinvar454678453996Variant is in ClinVar.
clinvarBenign143864143736Variant is in ClinVar with clinical significance of benign and/or likely benign.
clinvarConflicting79327950Variant is in ClinVar with reports of both benign and pathogenic significance.
clinvarPathogenic9624295262Variant is in ClinVar with clinical significance of pathogenic and/or likely pathogenic.
commonAll1218452112438655Variant is "common", i.e. has a Minor Allele Frequency of at least 1% in all\ projects reporting frequencies.
commonSome2054119020902944Variant is "common", i.e. has a Minor Allele Frequency of at least 1% in some, but not all,\ projects reporting frequencies.
diffMajor13778311399109Different frequency sources have different major alleles.
overlapDiffClass107015341110007682This variant overlaps another variant with a different type/class.
overlapSameClass1691523917291289This variant overlaps another with the same type/class but different start/end.
rareAll662601770681696398Variant is "rare", i.e. has a Minor Allele Frequency of less than 1%\ in all projects reporting frequencies, or has no frequency data.
rareSome670958439690160687Variant is "rare", i.e. has a Minor Allele Frequency of less than 1%\ in some, but not all, projects reporting frequencies, or has no frequency data.
revStrand38137024532511Alleles are displayed on the + strand at the current position.\ dbSNP's alleles are displayed on the + strand of a different assembly sequence,\ so dbSNP's variant page shows alleles that are reverse-complemented with respect to\ the alleles displayed above.
\

\ while others may indicate that the reference genome contains a rare variant or sequencing issue:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
keyword in data file (dbSnp153.bb)# in hg19# in hg38description
refIsAmbiguous101111The reference genome allele contains an IUPAC ambiguous base\ (e.g. 'R' for 'A or G', or 'N' for 'any base').
refIsMinor32721163360435The reference genome allele is not the major allele in at least one project.
refIsRare136547160827The reference genome allele is rare (i.e. allele frequency < 1%).
refIsSingleton3783250927The reference genome allele has never been observed in a population sequencing project\ reporting frequencies.
refMismatch433The reference genome allele reported by dbSNP differs from the GenBank assembly sequence.\ This is very rare and in all cases observed so far, the GenBank assembly has an 'N'\ while the RefSeq assembly used by dbSNP has a less ambiguous character such as 'R'.
\

\ and others may indicate an anomaly or problem with the variant data:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
keyword in data file (dbSnp153.bb)# in hg19# in hg38description
altIsAmbiguous1075510888At least one alternate allele contains an IUPAC ambiguous base (e.g. 'R' for 'A or G').\ For alleles containing more than one ambiguous base, this may create a\ combinatoric explosion of possible alleles.
classMismatch59986216Variation class/type is inconsistent with alleles mapped to this genome assembly.
clusterError114826128306This variant has the same start, end and class as another variant;\ they probably should have been merged into one variant.
freqIncomplete39224673At least one project reported counts for only one allele which implies that at\ least one allele is missing from the report;\ that project's frequency data are ignored.
freqIsAmbiguous76567756At least one allele reported by at least one project that reports frequencies\ contains an IUPAC ambiguous base.
freqNotMapped26856590At least one project reported allele frequencies relative to a different assembly;\ However, dbSNP does not include a mapping of this variant to that assembly, which\ implies a problem with mapping the variant across assemblies. The mapping on this\ assembly may have an issue; evaluate carefully vs. original submissions, which you\ can view by clicking through to dbSNP above.
freqNotRefAlt1769432170At least one allele reported by at least one project that reports frequencies\ does not match any of the reference or alternate alleles listed by dbSNP.
multiMap562180132123This variant has been mapped to more than one distinct genomic location.
otherMapErr114095204219At least one other mapping of this variant has erroneous coordinates.\ The mapping(s) with erroneous coordinates are excluded from this track\ and are included in the Map Err subtrack. Sometimes despite this mapping\ having legal coordinates, there may still be an issue with this mapping's\ coordinates and alleles; you may want to click through to dbSNP to compare\ the initial submission's coordinates and alleles.\ In hg19, 55454 distinct rsIDs are affected; in hg38, 86636.\
\ \ \

Data Sources and Methods

\

\ dbSNP has collected genetic variant reports from researchers worldwide for \ more than 20 years.\ Since the advent of next-generation sequencing methods and the population sequencing efforts\ that they enable, dbSNP has grown exponentially, requiring a new data schema, computational pipeline,\ web infrastructure, and download files.\ (Holmes et al.)\ The same challenges of exponential growth affected UCSC's presentation of dbSNP variants,\ so we have taken the opportunity to change our internal representation and import pipeline.\ Most notably, flanking sequences are no longer provided by dbSNP,\ because most submissions have been genomic variant calls in VCF format as opposed to\ independent sequences.\

\

\ We downloaded JSON files available from dbSNP at\ ftp://ftp.ncbi.nlm.nih.gov/snp/archive/b153/JSON/,\ extracted a subset of the information about each variant, and collated\ it into a bigBed file using the\ bigDbSnp.as schema with the information\ necessary for filtering and displaying the variants,\ as well as a separate file containing more detailed information to be\ displayed on each variant's details page\ (dbSnpDetails.as schema).\ \

Data Access

\

\ Note: It is not recommeneded to use LiftOver to convert SNPs between assemblies,\ and more information about how to convert SNPs between assemblies can be found on the following\ FAQ entry.

\

\ Since dbSNP has grown to include approximately 700 million variants, the size of the All dbSNP (153)\ subtrack can cause the\ Table Browser and\ Data Integrator\ to time out, leading to a blank page or truncated output,\ unless queries are restricted to a chromosomal region, to particular defined regions, to a specific set \ of rs# IDs (which can be pasted/uploaded into the Table Browser),\ or to one of the subset tracks such as Common (~15 million variants) or ClinVar (~0.5M variants).\

\ For automated analysis, the track data files can be downloaded from the downloads server for\ hg19 and\ hg38.\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
fileformatsubtrack
dbSnp153.bbhg19hg38bigDbSnp (bigBed4+13)All dbSNP (153)
dbSnp153ClinVar.bbhg19hg38bigDbSnp (bigBed4+13)ClinVar dbSNP (153)
dbSnp153Common.bbhg19hg38bigDbSnp (bigBed4+13)Common dbSNP (153)
dbSnp153Mult.bbhg19hg38bigDbSnp (bigBed4+13)Mult. dbSNP (153)
dbSnp153BadCoords.bbhg19hg38bigBed4Map Err (153)
\ dbSnp153Details.tab.gz\ gzip-compressed tab-separated textDetailed variant properties, independent of genome assembly version
\

\

\ Several utilities for working with bigBed-formatted binary files can be downloaded\ here.\ Run a utility with no arguments to see a brief description of the utility and its options.\

\

\ \

Example: retrieve all variants in the region chr1:200001-200400

\ \ 
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/snp/dbSnp153.bb -chrom=chr1 -start=200000 -end=200400 stdout
\ \

Example: retrieve variant rs6657048

\ \ 
bigBedNamedItems dbSnp153.bb rs6657048 stdout
\ \

Example: retrieve all variants with rs# IDs in file myIds.txt

\ \ 
bigBedNamedItems -nameFile dbSnp153.bb myIds.txt dbSnp153.myIds.bed
\ \

\ The columns in the bigDbSnp/bigBed files and dbSnp153Details.tab.gz file are described in\ bigDbSnp.as and\ dbSnpDetails.as respectively.\ For columns that contain lists of allele frequency data, the order of projects\ providing the data listed is as follows:\

    \
  1. 1000Genomes
    2. \
  2. GnomAD exomes
    3. \
  3. TOPMED
    4. \
  4. PAGE STUDY
    5. \
  5. GnomAD genomes
    6. \
  6. GoESP
    7. \
  7. Estonian
    8. \
  8. ALSPAC
    9. \
  9. TWINSUK
    10. \
  10. NorthernSweden
    11. \
  11. Vietnamese
    12. \
\

\ UCSC also has an\ API\ that can be used to retrieve values from a particular chromosome range.\

\ A list of rs# IDs can be pasted/uploaded in the\ Variant Annotation Integrator\ tool to find out which genes (if any) the variants are located in,\ as well as functional effect such as intron, coding-synonymous, missense, frameshift, etc.\

\ Please refer to our searchable\ mailing list archives\ for more questions and example queries, or our\ Data Access FAQ\ for more information.\

\ \

References

\ \

\ Holmes JB, Moyer E, Phan L, Maglott D, Kattman B.\ \ SPDI: Data Model for Variants and Applications at NCBI.\ Bioinformatics. 2019 Nov 18;.\ PMID: 31738401\

\

\ Sayers EW, Agarwala R, Bolton EE, Brister JR, Canese K, Clark K, Connor R, Fiorini N, Funk K,\ Hefferon T et al.\ \ Database resources of the National Center for Biotechnology Information.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D23-D28.\ PMID: 30395293; PMC: PMC6323993\

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122;\ PMC: PMC29783\

\ \ varRep 1 compositeTrack on\ group varRep\ html ../dbSnp153Composite\ longLabel Short Genetic Variants from dbSNP release 153\ maxWindowCoverage 4000000\ parent dbSnpArchive on\ priority 0.908\ shortLabel dbSNP 153\ subGroup1 view Views variants=Variants errs=Mapping_Errors\ track dbSnp153Composite\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/snp/$$\ urlLabel dbSNP:\ visibility pack\ dbSnp153ViewErrs Mapping Errors bed 6 + Short Genetic Variants from dbSNP release 153 1 0.908 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 longLabel Short Genetic Variants from dbSNP release 153\ parent dbSnp153Composite\ shortLabel Mapping Errors\ track dbSnp153ViewErrs\ view errs\ visibility dense\ dbSnp153ViewVariants Variants bigDbSnp Short Genetic Variants from dbSNP release 153 1 0.908 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 classFilterType multipleListOr\ classFilterValues snv,mnv,ins,del,delins,identity\ detailsTabUrls _dataOffset=/gbdb/hgFixed/dbSnp/dbSnp153Details.tab.gz\ freqSourceOrder 1000Genomes,GnomAD_exomes,TOPMED,ExAC,PAGE_STUDY,GnomAD,GoESP,Estonian,ALSPAC,TWINSUK,NorthernSweden,Vietnamese\ longLabel Short Genetic Variants from dbSNP release 153\ maxFuncImpactFilterLabel Greatest functional impact on gene\ maxFuncImpactFilterType multipleListOr\ maxFuncImpactFilterValues 0|(not annotated),0865|frameshift,1587|stop_gained,1574|splice_acceptor_variant,1575|splice_donor_variant,1821|inframe_insertion,1583|missense_variant,1590|terminator_codon_variant,1819|synonymous_variant,1580|coding_sequence_variant,1623|5_prime_UTR_variant,1624|3_prime_UTR_variant,1619|nc_transcript_variant,2153|genic_upstream_transcript_variant,1986|upstream_transcript_variant,2152|genic_downstream_transcript_variant,1987|downstream_transcript_variant,1627|intron_variant\ parent dbSnp153Composite\ shortLabel Variants\ showCfg on\ track dbSnp153ViewVariants\ type bigDbSnp\ ucscNotesFilterType multipleListOr\ ucscNotesFilterValues altIsAmbiguous|Alternate allele contains IUPAC ambiguous base(s),classMismatch|Variant class/type is inconsistent with allele sizes,clinvar|Present in ClinVar,clinvarBenign|ClinVar significance of benign and/or likely benign,clinvarConflicting|ClinVar includes both benign and pathogenic reports,clinvarPathogenic|ClinVar significance of pathogenic and/or likely pathogenic,clusterError|Overlaps a variant with the same type/class and position,commonAll|MAF >= 1% in all projects that report frequencies,commonSome|MAF >= 1% in at least one project that reports frequencies,diffMajor|Different projects report different major alleles,freqIncomplete|Frequency reported with incomplete allele data,freqIsAmbiguous|Frequency reported for allele with IUPAC ambiguous base(s),freqNotMapped|Frequency reported on different assembly but not mapped by dbSNP,freqNotRefAlt|Reference genome allele is not major allele in at least one project,multiMap|Variant is placed in more than one genomic position,otherMapErr|Another mapping of this variant has illegal coords (indel mapping error?),overlapDiffClass|Variant overlaps other variant(s) of different type/class,overlapSameClass|Variant overlaps other variant(s) of same type/class but different position,rareAll|MAF < 1% in all projects that report frequencies (or no frequency data),rareSome|MAF < 1% in at least one project that reports frequencies,refIsAmbiguous|Reference genome allele contains IUPAC ambiguous base(s),refIsMinor|Reference genome allele is minor allele in at least one project that reports frequencies,refIsRare|Reference genome allele frequency is <1% in at least one project,refIsSingleton|Reference genome frequency is 0 in all projects that report frequencies,refMismatch|Reference allele mismatches reference genome sequence,revStrand|Variant maps to opposite strand relative to dbSNP's preferred top-level placement\ view variants\ visibility dense\ snp151Common Common SNPs(151) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 151) Found in >= 1% of Samples 0 0.909 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 151, available from\ ftp.ncbi.nlm.nih.gov/snp.\ Only SNPs that have a minor allele frequency (MAF) of at least 1% and\ are mapped to a single location in the reference genome assembly are\ included in this subset. Frequency data are not available for all SNPs,\ so this subset is incomplete.\ Allele counts from all submissions that include frequency data are combined\ when determining MAF, so for example the allele counts from\ the 1000 Genomes Project and an independent submitter may be combined for the\ same variant.\

\

\ dbSNP provides\ download files\ in the\ Variant Call Format (VCF)\ that include a "COMMON" flag in the INFO column. That is determined by a different method,\ and is generally a superset of the UCSC Common set.\ dbSNP uses frequency data from the\ 1000 Genomes Project\ only, and considers a variant COMMON if it has a MAF of at least 0.01 in any of the five\ super-populations:\

\ In build 151, dbSNP marks approximately 38M variants as COMMON; 23M of those have a\ global MAF < 0.01. The remainder should be in agreement with UCSC's Common subset.\

\

\ The selection of SNPs with a minor allele frequency of 1% or greater\ is an attempt to identify variants that appear to be reasonably common\ in the general population. Taken as a set, common variants should be\ less likely to be associated with severe genetic diseases due to the\ effects of natural selection,\ following the view that deleterious variants are not likely to become\ common in the population.\ However, the significance of any particular variant should be interpreted\ only by a trained medical geneticist using all available information.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh37p13/database/data/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh38p7/database/data/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh38p7/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp151*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ \ GRCh37/hg19, GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro5\ chimpOrangMacOrthoTable snp151OrthoPt5Pa2Rm8\ codingAnnotations snp151CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp151Common\ longLabel Simple Nucleotide Polymorphisms (dbSNP 151) Found in >= 1% of Samples\ macaqueDb rheMac8\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.909\ shortLabel Common SNPs(151)\ snpExceptionDesc snp151ExceptionDesc\ snpSeq snp151Seq\ track snp151Common\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp151 All SNPs(151) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 151) 0 0.91 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 151, available from\ ftp.ncbi.nlm.nih.gov/snp.\

\

\ Three tracks contain subsets of the items in this track:\

\

\

\ The default maximum weight for this track is 1, so unless\ the setting is changed in the track controls, SNPs that map to multiple genomic\ locations will be omitted from display. When a SNP's flanking sequences\ map to multiple locations in the reference genome, it calls into question\ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh37p13/database/data/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh38p7/database/data/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh38p7/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp151*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ \ GRCh37/hg19, GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro5\ chimpOrangMacOrthoTable snp151OrthoPt5Pa2Rm8\ codingAnnotations snp151CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp151\ longLabel Simple Nucleotide Polymorphisms (dbSNP 151)\ macaqueDb rheMac8\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.910\ shortLabel All SNPs(151)\ track snp151\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp151Flagged Flagged SNPs(151) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 151) Flagged by dbSNP as Clinically Assoc 0 0.911 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 151, available from\ ftp.ncbi.nlm.nih.gov/snp.\ Only SNPs flagged as clinically associated by dbSNP,\ mapped to a single location in the reference genome assembly, and\ not known to have a minor allele frequency of at\ least 1%, are included in this subset.\ Frequency data are not available for all SNPs, so this subset probably\ includes some SNPs whose true minor allele frequency is 1% or greater.\

\

\ The significance of any particular variant in this track should be\ interpreted only by a trained medical geneticist using all available\ information. For example, some variants are included in this track\ because of their inclusion in a Locus-Specific Database (LSDB) or\ mention in OMIM, but are not thought to be disease-causing, so\ inclusion of a variant in this track is not necessarily an indicator\ of risk. Again, all available information must be carefully considered\ by a qualified professional.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh37p13/database/data/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh38p7/database/data/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh38p7/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp151*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ \ GRCh37/hg19, GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro5\ chimpOrangMacOrthoTable snp151OrthoPt5Pa2Rm8\ codingAnnotations snp151CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html snp151Flagged\ longLabel Simple Nucleotide Polymorphisms (dbSNP 151) Flagged by dbSNP as Clinically Assoc\ macaqueDb rheMac8\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.911\ shortLabel Flagged SNPs(151)\ snpExceptionDesc snp151ExceptionDesc\ snpSeq snp151Seq\ track snp151Flagged\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp151Mult Mult. SNPs(151) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 151) That Map to Multiple Genomic Loci 0 0.912 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 150, available from\ ftp.ncbi.nlm.nih.gov/snp.\ Only SNPs that have been mapped to multiple locations in the reference\ genome assembly are included in this subset. When a SNP's flanking sequences\ map to multiple locations in the reference genome, it calls into question\ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\

\ Since build 149, dbSNP has been filtering out almost all such "SNPs" so\ there are very few items in this track.\

\

\ The default maximum weight for this track is 3,\ unlike the other dbSNP build 150 tracks which have a maximum weight of 1.\ That enables these multiply-mapped SNPs to appear in the display, while\ by default they will not appear in the All SNPs(150) track because of its\ maximum weight filter.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/database/data/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh38p7/database/data/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh38p7/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp150*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro5\ chimpOrangMacOrthoTable snp151OrthoPt5Pa2Rm8\ codingAnnotations snp151CodingDbSnp,\ defaultGeneTracks knownGene\ defaultMaxWeight 3\ group varRep\ hapmapPhase III\ html ../snp150Mult\ longLabel Simple Nucleotide Polymorphisms (dbSNP 151) That Map to Multiple Genomic Loci\ macaqueDb rheMac8\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.912\ shortLabel Mult. SNPs(151)\ snpExceptionDesc snp151ExceptionDesc\ snpSeq snp151Seq\ track snp151Mult\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp150Mult Mult. SNPs(150) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 150) That Map to Multiple Genomic Loci 0 0.913 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 150, available from\ ftp.ncbi.nlm.nih.gov/snp.\ Only SNPs that have been mapped to multiple locations in the reference\ genome assembly are included in this subset. When a SNP's flanking sequences\ map to multiple locations in the reference genome, it calls into question\ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\

\ Since build 149, dbSNP has been filtering out almost all such "SNPs" so\ there are very few items in this track.\

\

\ The default maximum weight for this track is 3,\ unlike the other dbSNP build 150 tracks which have a maximum weight of 1.\ That enables these multiply-mapped SNPs to appear in the display, while\ by default they will not appear in the All SNPs(150) track because of its\ maximum weight filter.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/database/data/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh38p7/database/data/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh38p7/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp150*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro5\ chimpOrangMacOrthoTable snp150OrthoPt5Pa2Rm8\ codingAnnotations snp150CodingDbSnp,\ defaultGeneTracks knownGene\ defaultMaxWeight 3\ group varRep\ hapmapPhase III\ html ../snp150Mult\ longLabel Simple Nucleotide Polymorphisms (dbSNP 150) That Map to Multiple Genomic Loci\ macaqueDb rheMac8\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.913\ shortLabel Mult. SNPs(150)\ snpExceptionDesc snp150ExceptionDesc\ snpSeq snp150Seq\ track snp150Mult\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp150 All SNPs(150) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 150) 0 0.914 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 150, available from\ ftp.ncbi.nlm.nih.gov/snp.\

\

\ Three tracks contain subsets of the items in this track:\

\

\

\ The default maximum weight for this track is 1, so unless\ the setting is changed in the track controls, SNPs that map to multiple genomic\ locations will be omitted from display. When a SNP's flanking sequences\ map to multiple locations in the reference genome, it calls into question\ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/database/data/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh38p7/database/data/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh38p7/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp150*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro5\ chimpOrangMacOrthoTable snp150OrthoPt5Pa2Rm8\ codingAnnotations snp150CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp150\ longLabel Simple Nucleotide Polymorphisms (dbSNP 150)\ macaqueDb rheMac8\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.914\ shortLabel All SNPs(150)\ track snp150\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp150Common Common SNPs(150) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 150) Found in >= 1% of Samples 0 0.915 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 150, available from\ ftp.ncbi.nlm.nih.gov/snp.\ Only SNPs that have a minor allele frequency (MAF) of at least 1% and\ are mapped to a single location in the reference genome assembly are\ included in this subset. Frequency data are not available for all SNPs,\ so this subset is incomplete.\ Allele counts from all submissions that include frequency data are combined\ when determining MAF, so for example the allele counts from\ the 1000 Genomes Project and an independent submitter may be combined for the\ same variant.\

\

\ dbSNP provides\ download files\ in the\ Variant Call Format (VCF)\ that include a "COMMON" flag in the INFO column. That is determined by a different method,\ and is generally a superset of the UCSC Common set.\ dbSNP uses frequency data from the\ 1000 Genomes Project\ only, and considers a variant COMMON if it has a MAF of at least 0.01 in any of the five\ super-populations:\

\ In build 151 (which has replaced build 150 on the dbSNP web and download site),\ dbSNP marks approximately 38M variants as COMMON; 23M of those have a\ global MAF < 0.01. The remainder should be in agreement with UCSC's Common subset.\

\

\ The selection of SNPs with a minor allele frequency of 1% or greater\ is an attempt to identify variants that appear to be reasonably common\ in the general population. Taken as a set, common variants should be\ less likely to be associated with severe genetic diseases due to the\ effects of natural selection,\ following the view that deleterious variants are not likely to become\ common in the population.\ However, the significance of any particular variant should be interpreted\ only by a trained medical geneticist using all available information.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/database/data/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh38p7/database/data/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh38p7/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp150*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro5\ chimpOrangMacOrthoTable snp150OrthoPt5Pa2Rm8\ codingAnnotations snp150CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp150Common\ longLabel Simple Nucleotide Polymorphisms (dbSNP 150) Found in >= 1% of Samples\ macaqueDb rheMac8\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.915\ shortLabel Common SNPs(150)\ snpExceptionDesc snp150ExceptionDesc\ snpSeq snp150Seq\ track snp150Common\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp150Flagged Flagged SNPs(150) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 150) Flagged by dbSNP as Clinically Assoc 0 0.916 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 150, available from\ ftp.ncbi.nlm.nih.gov/snp.\ Only SNPs flagged as clinically associated by dbSNP,\ mapped to a single location in the reference genome assembly, and\ not known to have a minor allele frequency of at\ least 1%, are included in this subset.\ Frequency data are not available for all SNPs, so this subset probably\ includes some SNPs whose true minor allele frequency is 1% or greater.\

\

\ The significance of any particular variant in this track should be\ interpreted only by a trained medical geneticist using all available\ information. For example, some variants are included in this track\ because of their inclusion in a Locus-Specific Database (LSDB) or\ mention in OMIM, but are not thought to be disease-causing, so\ inclusion of a variant in this track is not necessarily an indicator\ of risk. Again, all available information must be carefully considered\ by a qualified professional.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/database/data/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh38p7/database/data/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh38p7/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp150*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro5\ chimpOrangMacOrthoTable snp150OrthoPt5Pa2Rm8\ codingAnnotations snp150CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp150Flagged\ longLabel Simple Nucleotide Polymorphisms (dbSNP 150) Flagged by dbSNP as Clinically Assoc\ macaqueDb rheMac8\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.916\ shortLabel Flagged SNPs(150)\ snpExceptionDesc snp150ExceptionDesc\ snpSeq snp150Seq\ track snp150Flagged\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp147Mult Mult. SNPs(147) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 147) That Map to Multiple Genomic Loci 0 0.921 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 147, available from\ ftp.ncbi.nlm.nih.gov/snp.\ Only SNPs that have been mapped to multiple locations in the reference\ genome assembly are included in this subset. When a SNP's flanking sequences\ map to multiple locations in the reference genome, it calls into question\ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\

\ The default maximum weight for this track is 3,\ unlike the other dbSNP build 147 tracks which have a maximum weight of 1.\ That enables these multiply-mapped SNPs to appear in the display, while\ by default they will not appear in the All SNPs(147) track because of its\ maximum weight filter.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp147*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp147OrthoPt4Pa2Rm3\ codingAnnotations snp147CodingDbSnp,\ defaultGeneTracks knownGene\ defaultMaxWeight 3\ group varRep\ hapmapPhase III\ html ../snp147Mult\ longLabel Simple Nucleotide Polymorphisms (dbSNP 147) That Map to Multiple Genomic Loci\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.921\ shortLabel Mult. SNPs(147)\ snpExceptionDesc snp147ExceptionDesc\ snpSeq snp147Seq\ track snp147Mult\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp147Flagged Flagged SNPs(147) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 147) Flagged by dbSNP as Clinically Assoc 0 0.922 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 147, available from\ ftp.ncbi.nlm.nih.gov/snp.\ Only SNPs flagged as clinically associated by dbSNP,\ mapped to a single location in the reference genome assembly, and\ not known to have a minor allele frequency of at\ least 1%, are included in this subset.\ Frequency data are not available for all SNPs, so this subset probably\ includes some SNPs whose true minor allele frequency is 1% or greater.\

\

\ The significance of any particular variant in this track should be\ interpreted only by a trained medical geneticist using all available\ information. For example, some variants are included in this track\ because of their inclusion in a Locus-Specific Database (LSDB) or\ mention in OMIM, but are not thought to be disease-causing, so\ inclusion of a variant in this track is not necessarily an indicator\ of risk. Again, all available information must be carefully considered\ by a qualified professional.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp147*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp147OrthoPt4Pa2Rm3\ codingAnnotations snp147CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp147Flagged\ longLabel Simple Nucleotide Polymorphisms (dbSNP 147) Flagged by dbSNP as Clinically Assoc\ macaqueDb rheMac3\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.922\ shortLabel Flagged SNPs(147)\ snpExceptionDesc snp147ExceptionDesc\ snpSeq snp147Seq\ track snp147Flagged\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp147Common Common SNPs(147) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 147) Found in >= 1% of Samples 0 0.923 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 147, available from\ ftp.ncbi.nlm.nih.gov/snp.\ Only SNPs that have a minor allele frequency of at least 1% and\ are mapped to a single location in the reference genome assembly are\ included in this subset. Frequency data are not available for all SNPs,\ so this subset is incomplete.\

\

\ The selection of SNPs with a minor allele frequency of 1% or greater\ is an attempt to identify variants that appear to be reasonably common\ in the general population. Taken as a set, common variants should be\ less likely to be associated with severe genetic diseases due to the\ effects of natural selection,\ following the view that deleterious variants are not likely to become\ common in the population.\ However, the significance of any particular variant should be interpreted\ only by a trained medical geneticist using all available information.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp147*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp147OrthoPt4Pa2Rm3\ codingAnnotations snp147CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp147Common\ longLabel Simple Nucleotide Polymorphisms (dbSNP 147) Found in >= 1% of Samples\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.923\ shortLabel Common SNPs(147)\ snpExceptionDesc snp147ExceptionDesc\ snpSeq snp147Seq\ track snp147Common\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp147 All SNPs(147) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 147) 0 0.924 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 147, available from\ ftp.ncbi.nlm.nih.gov/snp.\

\

\ Three tracks contain subsets of the items in this track:\

\

\

\ The default maximum weight for this track is 1, so unless\ the setting is changed in the track controls, SNPs that map to multiple genomic\ locations will be omitted from display. When a SNP's flanking sequences\ map to multiple locations in the reference genome, it calls into question\ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period >= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp147*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp147OrthoPt4Pa2Rm3\ codingAnnotations snp147CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp147\ longLabel Simple Nucleotide Polymorphisms (dbSNP 147)\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.924\ shortLabel All SNPs(147)\ track snp147\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp146Mult Mult. SNPs(146) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 146) That Map to Multiple Genomic Loci 0 0.925 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 146, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs that have been mapped to multiple locations in the reference\ genome assembly are included in this subset. When a SNP's flanking sequences\ map to multiple locations in the reference genome, it calls into question\ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\

\ The default maximum weight for this track is 3,\ unlike the other dbSNP build 146 tracks which have a maximum weight of 1.\ That enables these multiply-mapped SNPs to appear in the display, while\ by default they will not appear in the All SNPs(146) track because of its\ maximum weight filter.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp146*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp146OrthoPt4Pa2Rm3\ codingAnnotations snp146CodingDbSnp,\ defaultGeneTracks knownGene\ defaultMaxWeight 3\ group varRep\ hapmapPhase III\ html ../snp146Mult\ longLabel Simple Nucleotide Polymorphisms (dbSNP 146) That Map to Multiple Genomic Loci\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.925\ shortLabel Mult. SNPs(146)\ snpExceptionDesc snp146ExceptionDesc\ snpSeq snp146Seq\ track snp146Mult\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp146Flagged Flagged SNPs(146) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 146) Flagged by dbSNP as Clinically Assoc 0 0.926 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 146, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs flagged as clinically associated by dbSNP,\ mapped to a single location in the reference genome assembly, and\ not known to have a minor allele frequency of at\ least 1%, are included in this subset.\ Frequency data are not available for all SNPs, so this subset probably\ includes some SNPs whose true minor allele frequency is 1% or greater.\

\

\ The significance of any particular variant in this track should be\ interpreted only by a trained medical geneticist using all available\ information. For example, some variants are included in this track\ because of their inclusion in a Locus-Specific Database (LSDB) or\ mention in OMIM, but are not thought to be disease-causing, so\ inclusion of a variant in this track is not necessarily an indicator\ of risk. Again, all available information must be carefully considered\ by a qualified professional.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp146*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp146OrthoPt4Pa2Rm3\ codingAnnotations snp146CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp146Flagged\ longLabel Simple Nucleotide Polymorphisms (dbSNP 146) Flagged by dbSNP as Clinically Assoc\ macaqueDb rheMac3\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.926\ shortLabel Flagged SNPs(146)\ snpExceptionDesc snp146ExceptionDesc\ snpSeq snp146Seq\ track snp146Flagged\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp146Common Common SNPs(146) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 146) Found in >= 1% of Samples 0 0.927 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 146, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs that have a minor allele frequency of at least 1% and\ are mapped to a single location in the reference genome assembly are\ included in this subset. Frequency data are not available for all SNPs,\ so this subset is incomplete.\

\

\ The selection of SNPs with a minor allele frequency of 1% or greater\ is an attempt to identify variants that appear to be reasonably common\ in the general population. Taken as a set, common variants should be\ less likely to be associated with severe genetic diseases due to the\ effects of natural selection,\ following the view that deleterious variants are not likely to become\ common in the population.\ However, the significance of any particular variant should be interpreted\ only by a trained medical geneticist using all available information.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp146*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp146OrthoPt4Pa2Rm3\ codingAnnotations snp146CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp146Common\ longLabel Simple Nucleotide Polymorphisms (dbSNP 146) Found in >= 1% of Samples\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.927\ shortLabel Common SNPs(146)\ snpExceptionDesc snp146ExceptionDesc\ snpSeq snp146Seq\ track snp146Common\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp146 All SNPs(146) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 146) 0 0.928 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 146, available from\ ftp.ncbi.nih.gov/snp.\

\

\ Three tracks contain subsets of the items in this track:\

\

\

\ The default maximum weight for this track is 1, so unless\ the setting is changed in the track controls, SNPs that map to multiple genomic\ locations will be omitted from display. When a SNP's flanking sequences\ map to multiple locations in the reference genome, it calls into question\ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b146_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp146*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp146OrthoPt4Pa2Rm3\ codingAnnotations snp146CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp146\ longLabel Simple Nucleotide Polymorphisms (dbSNP 146)\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.928\ shortLabel All SNPs(146)\ track snp146\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp144Mult Mult. SNPs(144) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 144) That Map to Multiple Genomic Loci 0 0.929 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 144, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs that have been mapped to multiple locations in the reference\ genome assembly are included in this subset. When a SNP's flanking sequences\ map to multiple locations in the reference genome, it calls into question\ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\

\ The default maximum weight for this track is 3,\ unlike the other dbSNP build 144 tracks which have a maximum weight of 1.\ That enables these multiply-mapped SNPs to appear in the display, while\ by default they will not appear in the All SNPs(144) track because of its\ maximum weight filter.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp144*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp144OrthoPt4Pa2Rm3\ codingAnnotations snp144CodingDbSnp,\ defaultGeneTracks knownGene\ defaultMaxWeight 3\ group varRep\ hapmapPhase III\ html ../snp144Mult\ longLabel Simple Nucleotide Polymorphisms (dbSNP 144) That Map to Multiple Genomic Loci\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.929\ shortLabel Mult. SNPs(144)\ snpExceptionDesc snp144ExceptionDesc\ snpSeq snp144Seq\ snpSeqFile /gbdb/hg38/snp/snp144.fa\ track snp144Mult\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp144Flagged Flagged SNPs(144) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 144) Flagged by dbSNP as Clinically Assoc 0 0.93 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 144, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs flagged as clinically associated by dbSNP,\ mapped to a single location in the reference genome assembly, and\ not known to have a minor allele frequency of at\ least 1%, are included in this subset.\ Frequency data are not available for all SNPs, so this subset probably\ includes some SNPs whose true minor allele frequency is 1% or greater.\

\

\ The significance of any particular variant in this track should be\ interpreted only by a trained medical geneticist using all available\ information. For example, some variants are included in this track\ because of their inclusion in a Locus-Specific Database (LSDB) or\ mention in OMIM, but are not thought to be disease-causing, so\ inclusion of a variant in this track is not necessarily an indicator\ of risk. Again, all available information must be carefully considered\ by a qualified professional.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp144*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp144OrthoPt4Pa2Rm3\ codingAnnotations snp144CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp144Flagged\ longLabel Simple Nucleotide Polymorphisms (dbSNP 144) Flagged by dbSNP as Clinically Assoc\ macaqueDb rheMac3\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.93\ shortLabel Flagged SNPs(144)\ snpExceptionDesc snp144ExceptionDesc\ snpSeq snp144Seq\ snpSeqFile /gbdb/hg38/snp/snp144.fa\ track snp144Flagged\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp144Common Common SNPs(144) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 144) Found in >= 1% of Samples 0 0.931 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the\ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 144, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs that have a minor allele frequency of at least 1% and\ are mapped to a single location in the reference genome assembly are\ included in this subset. Frequency data are not available for all SNPs,\ so this subset is incomplete.\

\

\ The selection of SNPs with a minor allele frequency of 1% or greater\ is an attempt to identify variants that appear to be reasonably common\ in the general population. Taken as a set, common variants should be\ less likely to be associated with severe genetic diseases due to the\ effects of natural selection,\ following the view that deleterious variants are not likely to become\ common in the population.\ However, the significance of any particular variant should be interpreted\ only by a trained medical geneticist using all available information.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp144*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp144OrthoPt4Pa2Rm3\ codingAnnotations snp144CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp144Common\ longLabel Simple Nucleotide Polymorphisms (dbSNP 144) Found in >= 1% of Samples\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.931\ shortLabel Common SNPs(144)\ snpExceptionDesc snp144ExceptionDesc\ snpSeq snp144Seq\ snpSeqFile /gbdb/hg38/snp/snp144.fa\ track snp144Common\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp144 All SNPs(144) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 144) 0 0.932 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 144, available from\ ftp.ncbi.nih.gov/snp.\

\

\ Three tracks contain subsets of the items in this track:\

\

\

\ The default maximum weight for this track is 1, so unless\ the setting is changed in the track controls, SNPs that map to multiple genomic\ locations will be omitted from display. When a SNP's flanking sequences\ map to multiple locations in the reference genome, it calls into question\ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width\ of a single base, and multiple nucleotide variants are represented by a\ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the\ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have\ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to\ particular gene sets. Choose the gene sets from the list on the SNP\ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to.\ When one or more gene tracks are selected, the SNP details page\ lists all genes that the SNP hits (or is close to), with the same keywords\ used in the function category. The function usually\ agrees with NCBI's function, except when NCBI's functional annotation is\ relative to an XM_* predicted RefSeq (not included in the UCSC Genome\ Browser's RefSeq Genes track) and/or UCSC's functional annotation is\ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking\ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences\ to the neighboring genomic sequence for display on SNP details pages.\ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking\ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files\ and headers of fasta files downloaded from NCBI.\ The database dump files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh38p2/database/organism_data/\ for hg38.\ The fasta files were downloaded from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b144_GRCh38p2/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp144*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies.\ We use our liftOver utility to identify the orthologous alleles.\ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the\ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use\ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19,\ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.\ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp144OrthoPt4Pa2Rm3\ codingAnnotations snp144CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp144\ longLabel Simple Nucleotide Polymorphisms (dbSNP 144)\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.932\ shortLabel All SNPs(144)\ snpSeqFile /gbdb/hg38/snp/snp144.fa\ track snp144\ trackHandler snp125\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp142Mult Mult. SNPs(142) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 142) That Map to Multiple Genomic Loci 0 0.933 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the \ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 142, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs that have been mapped to multiple locations in the reference\ genome assembly are included in this subset. When a SNP's flanking sequences \ map to multiple locations in the reference genome, it calls into question \ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\

\ The default maximum weight for this track is 3,\ unlike the other dbSNP build 142 tracks which have a maximum weight of 1. \ That enables these multiply-mapped SNPs to appear in the display, while \ by default they will not appear in the All SNPs(142) track because of its \ maximum weight filter.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have \ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh38/database/organism_data/\ for hg38.\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh38/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp142*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19, \ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp142OrthoPt4Pa2Rm3\ codingAnnotations snp142CodingDbSnp,\ defaultGeneTracks knownGene\ defaultMaxWeight 3\ group varRep\ hapmapPhase III\ html ../snp142Mult\ longLabel Simple Nucleotide Polymorphisms (dbSNP 142) That Map to Multiple Genomic Loci\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.933\ shortLabel Mult. SNPs(142)\ snpExceptionDesc snp142ExceptionDesc\ snpSeq snp142Seq\ snpSeqFile /gbdb/hg38/snp/snp142.fa\ track snp142Mult\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp142Flagged Flagged SNPs(142) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 142) Flagged by dbSNP as Clinically Assoc 0 0.934 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the \ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 142, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs flagged as clinically associated by dbSNP, \ mapped to a single location in the reference genome assembly, and \ not known to have a minor allele frequency of at \ least 1%, are included in this subset.\ Frequency data are not available for all SNPs, so this subset probably\ includes some SNPs whose true minor allele frequency is 1% or greater.\

\

\ The significance of any particular variant in this track should be\ interpreted only by a trained medical geneticist using all available\ information. For example, some variants are included in this track\ because of their inclusion in a Locus-Specific Database (LSDB) or\ mention in OMIM, but are not thought to be disease-causing, so\ inclusion of a variant in this track is not necessarily an indicator\ of risk. Again, all available information must be carefully considered\ by a qualified professional.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have \ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh38/database/organism_data/\ for hg38.\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh38/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp142*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19, \ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp142OrthoPt4Pa2Rm3\ codingAnnotations snp142CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp142Flagged\ longLabel Simple Nucleotide Polymorphisms (dbSNP 142) Flagged by dbSNP as Clinically Assoc\ macaqueDb rheMac3\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.934\ shortLabel Flagged SNPs(142)\ snpExceptionDesc snp142ExceptionDesc\ snpSeq snp142Seq\ snpSeqFile /gbdb/hg38/snp/snp142.fa\ track snp142Flagged\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp142Common Common SNPs(142) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 142) Found in >= 1% of Samples 0 0.935 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the \ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 142, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs that have a minor allele frequency of at least 1% and\ are mapped to a single location in the reference genome assembly are\ included in this subset. Frequency data are not available for all SNPs,\ so this subset is incomplete.\

\

\ The selection of SNPs with a minor allele frequency of 1% or greater\ is an attempt to identify variants that appear to be reasonably common\ in the general population. Taken as a set, common variants should be\ less likely to be associated with severe genetic diseases due to the\ effects of natural selection,\ following the view that deleterious variants are not likely to become\ common in the population.\ However, the significance of any particular variant should be interpreted\ only by a trained medical geneticist using all available information.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have \ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh38/database/organism_data/\ for hg38.\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh38/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp142*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19, \ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp142OrthoPt4Pa2Rm3\ codingAnnotations snp142CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp142Common\ longLabel Simple Nucleotide Polymorphisms (dbSNP 142) Found in >= 1% of Samples\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.935\ shortLabel Common SNPs(142)\ snpExceptionDesc snp142ExceptionDesc\ snpSeq snp142Seq\ snpSeqFile /gbdb/hg38/snp/snp142.fa\ track snp142Common\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp142 All SNPs(142) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 142) 0 0.936 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 142, available from\ ftp.ncbi.nih.gov/snp.\

\

\ Three tracks contain subsets of the items in this track:\

\

\

\ The default maximum weight for this track is 1, so unless\ the setting is changed in the track controls, SNPs that map to multiple genomic \ locations will be omitted from display. When a SNP's flanking sequences \ map to multiple locations in the reference genome, it calls into question \ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have \ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh37p13/database/organism_data/\ for hg19 and from\ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh38/database/organism_data/\ for hg38.\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh37p13/rs_fasta/\ for hg19 and from\ ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b142_GRCh38/rs_fasta/\ for hg38.\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp142*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19, \ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp142OrthoPt4Pa2Rm3\ codingAnnotations snp142CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp142\ longLabel Simple Nucleotide Polymorphisms (dbSNP 142)\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.936\ shortLabel All SNPs(142)\ snpSeqFile /gbdb/hg38/snp/snp142.fa\ track snp142\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp141Mult Mult. SNPs(141) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 141) That Map to Multiple Genomic Loci 0 0.937 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the \ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 141, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs that have been mapped to multiple locations in the reference\ genome assembly are included in this subset. When a SNP's flanking sequences \ map to multiple locations in the reference genome, it calls into question \ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\

\ The default maximum weight for this track is 3,\ unlike the other dbSNP build 141 tracks which have a maximum weight of 1. \ That enables these multiply-mapped SNPs to appear in the display, while \ by default they will not appear in the All SNPs(141) track because of its \ maximum weight filter.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have \ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/database/\ (for human, organism_tax_id = human_9606;\ for mouse, organism_tax_id = mouse_10090).\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/rs_fasta/\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp141*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19, \ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp141OrthoPt4Pa2Rm3\ codingAnnotations snp141CodingDbSnp,\ defaultGeneTracks knownGene\ defaultMaxWeight 3\ group varRep\ hapmapPhase III\ html ../snp141Mult\ longLabel Simple Nucleotide Polymorphisms (dbSNP 141) That Map to Multiple Genomic Loci\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.937\ shortLabel Mult. SNPs(141)\ snpExceptionDesc snp141ExceptionDesc\ snpSeq snp141Seq\ snpSeqFile /gbdb/hg38/snp/snp141.fa\ track snp141Mult\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp141Flagged Flagged SNPs(141) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 141) Flagged by dbSNP as Clinically Assoc 0 0.938 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the \ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 141, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs flagged as clinically associated by dbSNP, \ mapped to a single location in the reference genome assembly, and \ not known to have a minor allele frequency of at \ least 1%, are included in this subset.\ Frequency data are not available for all SNPs, so this subset probably\ includes some SNPs whose true minor allele frequency is 1% or greater.\

\

\ The significance of any particular variant in this track should be\ interpreted only by a trained medical geneticist using all available\ information. For example, some variants are included in this track\ because of their inclusion in a Locus-Specific Database (LSDB) or\ mention in OMIM, but are not thought to be disease-causing, so\ inclusion of a variant in this track is not necessarily an indicator\ of risk. Again, all available information must be carefully considered\ by a qualified professional.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have \ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/database/\ (for human, organism_tax_id = human_9606;\ for mouse, organism_tax_id = mouse_10090).\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/rs_fasta/\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp141*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19, \ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp141OrthoPt4Pa2Rm3\ codingAnnotations snp141CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp141Flagged\ longLabel Simple Nucleotide Polymorphisms (dbSNP 141) Flagged by dbSNP as Clinically Assoc\ macaqueDb rheMac3\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.938\ shortLabel Flagged SNPs(141)\ snpExceptionDesc snp141ExceptionDesc\ snpSeq snp141Seq\ snpSeqFile /gbdb/hg38/snp/snp141.fa\ track snp141Flagged\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp141Common Common SNPs(141) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 141) Found in >= 1% of Samples 0 0.939 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about a subset of the \ single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 141, available from\ ftp.ncbi.nih.gov/snp.\ Only SNPs that have a minor allele frequency of at least 1% and\ are mapped to a single location in the reference genome assembly are\ included in this subset. Frequency data are not available for all SNPs,\ so this subset is incomplete.\

\

\ The selection of SNPs with a minor allele frequency of 1% or greater\ is an attempt to identify variants that appear to be reasonably common\ in the general population. Taken as a set, common variants should be\ less likely to be associated with severe genetic diseases due to the\ effects of natural selection,\ following the view that deleterious variants are not likely to become\ common in the population.\ However, the significance of any particular variant should be interpreted\ only by a trained medical geneticist using all available information.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have \ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/database/\ (for human, organism_tax_id = human_9606;\ for mouse, organism_tax_id = mouse_10090).\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/rs_fasta/\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp141*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19, \ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp141OrthoPt4Pa2Rm3\ codingAnnotations snp141CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp141Common\ longLabel Simple Nucleotide Polymorphisms (dbSNP 141) Found in >= 1% of Samples\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.939\ shortLabel Common SNPs(141)\ snpExceptionDesc snp141ExceptionDesc\ snpSeq snp141Seq\ snpSeqFile /gbdb/hg38/snp/snp141.fa\ track snp141Common\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ snp141 All SNPs(141) bed 6 + Simple Nucleotide Polymorphisms (dbSNP 141) 0 0.94 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

Description

\ \

\ This track contains information about single nucleotide polymorphisms\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP\ build 141, available from\ ftp.ncbi.nih.gov/snp.\

\

\ Three tracks contain subsets of the items in this track:\

\

\

\ The default maximum weight for this track is 1, so unless\ the setting is changed in the track controls, SNPs that map to multiple genomic \ locations will be omitted from display. When a SNP's flanking sequences \ map to multiple locations in the reference genome, it calls into question \ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

\ \ The remainder of this page is identical on the following tracks:\ \ \

Interpreting and Configuring the Graphical Display

\

\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

\ \

\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

\ \ Several other properties do not have coloring options, but do have \ some filtering options:\ \ \

\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

\ \

Insertions/Deletions

\

\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

\ \

UCSC Re-alignment of flanking sequences

\

\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

\

\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

\ \

Data Sources and Methods

\ \

\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/database/\ (for human, organism_tax_id = human_9606;\ for mouse, organism_tax_id = mouse_10090).\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/rs_fasta/\

\ \ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser,\ Data Integrator, or Variant Annotation Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server for hg38 and\ hg19 (snp141*.txt.gz) or the public MySQL server.\ Please refer to our mailing list archives\ for questions and example queries, or our Data Access FAQ for more information.\

\ \

Orthologous Alleles (human assemblies only)

\

\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

\ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

Masked FASTA Files (human assemblies only)

\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download:\ GRCh37/hg19, \ GRCh38/hg38.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exclude problematic SNPs.\ \

References

\

\ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

\ \ \ varRep 1 chimpDb panTro4\ chimpOrangMacOrthoTable snp141OrthoPt4Pa2Rm3\ codingAnnotations snp141CodingDbSnp,\ defaultGeneTracks knownGene\ group varRep\ hapmapPhase III\ html ../snp141\ longLabel Simple Nucleotide Polymorphisms (dbSNP 141)\ macaqueDb rheMac3\ maxWindowToDraw 10000000\ orangDb ponAbe2\ parent dbSnpArchive\ priority 0.94\ shortLabel All SNPs(141)\ snpSeqFile /gbdb/hg38/snp/snp141.fa\ track snp141\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ chainMonDom5 Opossum Chain chain monDom5 Opossum (Oct. 2006 (Broad/monDom5)) Chained Alignments 3 1 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Opossum (Oct. 2006 (Broad/monDom5)) Chained Alignments\ otherDb monDom5\ parent vertebrateChainNetViewchain off\ shortLabel Opossum Chain\ subGroups view=chain species=s003 clade=c00\ track chainMonDom5\ type chain monDom5\ chainPanTro6 Chimp Chain chain panTro6 Chimp (Jan. 2018 (Clint_PTRv2/panTro6)) Chained Alignments 3 1 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Chimp (Jan. 2018 (Clint_PTRv2/panTro6)) Chained Alignments\ otherDb panTro6\ parent primateChainNetViewchain off\ shortLabel Chimp Chain\ subGroups view=chain species=s0025 clade=c00\ track chainPanTro6\ type chain panTro6\ chainCriGriChoV2 Chinese hamster Chain chain criGriChoV2 Chinese hamster (Jun. 2017 (CHOK1S_HZDv1/criGriChoV2)) Chained Alignments 3 1 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Chinese hamster (Jun. 2017 (CHOK1S_HZDv1/criGriChoV2)) Chained Alignments\ otherDb criGriChoV2\ parent placentalChainNetViewchain off\ shortLabel Chinese hamster Chain\ subGroups view=chain species=s004b clade=c00\ track chainCriGriChoV2\ type chain criGriChoV2\ tgpNA12878_1463_CEU 1463 CEU Trio vcfPhasedTrio 1000 Genomes Utah CEPH Trio 2 1 0 0 0 127 127 127 0 0 23 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX, varRep 0 longLabel 1000 Genomes Utah CEPH Trio\ parent tgpTrios\ shortLabel 1463 CEU Trio\ track tgpNA12878_1463_CEU\ type vcfPhasedTrio\ vcfChildSample NA12878|child\ vcfParentSamples NA12892|mother,NA12891|father\ visibility full\ phyloP447wayBW 447 phyloP REV bigWig -20 11.936 447 mammals Basewise Conservation by PhyloP phyloFit REV model 2 1 60 60 140 140 60 60 0 0 0 compGeno 0 altColor 140,60,60\ autoScale off\ bigDataUrl https://hgdownload.soe.ucsc.edu/goldenPath/hg38/phyloP447way/hg38.phyloP447way.bw\ color 60,60,140\ configurable on\ longLabel 447 mammals Basewise Conservation by PhyloP phyloFit REV model\ maxHeightPixels 100:50:11\ noInherit on\ parent cons447wayViewphyloP\ priority 1\ shortLabel 447 phyloP REV\ spanList 1\ subGroups view=phyloP\ track phyloP447wayBW\ type bigWig -20 11.936\ viewLimits -4.5:7.5\ windowingFunction mean\ encTfChipPkENCFF851UTY A549 ATF3 narrowPeak Transcription Factor ChIP-seq Peaks of ATF3 in A549 from ENCODE 3 (ENCFF851UTY) 0 1 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of ATF3 in A549 from ENCODE 3 (ENCFF851UTY)\ parent encTfChipPk off\ shortLabel A549 ATF3\ subGroups cellType=A549 factor=ATF3\ track encTfChipPkENCFF851UTY\ cloneEndABC10 ABC10 bed 12 Agencourt fosmid library 10 3 1 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 10\ parent cloneEndSuper off\ priority 1\ shortLabel ABC10\ subGroups source=agencourt\ track cloneEndABC10\ type bed 12\ visibility pack\ gtexCovAdiposeSubcutaneous Adip Subcut bigWig Adipose Subcutaneous 0 1 255 165 79 255 210 167 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-NFK9-0326-SM-3MJGV.Adipose_Subcutaneous.RNAseq.bw\ color 255,165,79\ longLabel Adipose Subcutaneous\ parent gtexCov\ shortLabel Adip Subcut\ track gtexCovAdiposeSubcutaneous\ lincRNAsCTAdipose Adipose bed 5 + lincRNAs from adipose 1 1 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from adipose\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Adipose\ subGroups view=lincRNAsRefseqExp tissueType=adipose\ track lincRNAsCTAdipose\ genetiSureCytoCghSnp Agilent GenetiSure Cyto CGH+SNP bigBed 4 Agilent GenetiSure Cyto CGH+SNP 4x180K 085591 20200302 3 1 0 0 0 127 127 127 0 0 0 varRep 1 bigDataUrl /gbdb/hg38/snpCnvArrays/agilent/hg38.GenetiSure_Cyto_CGH+SNP_Microarray_4x180K_085591_D_BED_20200302.bb\ longLabel Agilent GenetiSure Cyto CGH+SNP 4x180K 085591 20200302\ parent genotypeArrays on\ priority 1\ shortLabel Agilent GenetiSure Cyto CGH+SNP\ track genetiSureCytoCghSnp\ type bigBed 4\ visibility pack\ allCancer All Cancers bigLolly 12 + All TCGA Pan-Cancer mutations: 33 TCGA Cancer Projects Summary (Pan-Can 33) 0 1 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/gdcCancer.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel All TCGA Pan-Cancer mutations: 33 TCGA Cancer Projects Summary (Pan-Can 33)\ parent gdcCancer on\ priority 1\ shortLabel All Cancers\ track allCancer\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/$$\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep1LK1_CNhs13339_tpm_fwd AorticSmsToFgf2_00hr00minBr1+ bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)_CNhs13339_12642-134G5_forward 1 1 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12642-134G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep1%20%28LK1%29.CNhs13339.12642-134G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)_CNhs13339_12642-134G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12642-134G5 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToFgf2_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep1LK1_CNhs13339_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12642-134G5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep1LK1_CNhs13339_ctss_fwd AorticSmsToFgf2_00hr00minBr1+ bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)_CNhs13339_12642-134G5_forward 0 1 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12642-134G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep1%20%28LK1%29.CNhs13339.12642-134G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)_CNhs13339_12642-134G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12642-134G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep1LK1_CNhs13339_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12642-134G5\ urlLabel FANTOM5 Details:\ ashkenazimTrio Ashkenazim Trio vcfPhasedTrio Genome In a Bottle Ashkenazim Trio 0 1 0 0 0 127 127 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/giab/AshkenazimTrio/merged.vcf.gz\ longLabel Genome In a Bottle Ashkenazim Trio\ maxWindowToDraw 5000000\ parent triosView\ shortLabel Ashkenazim Trio\ subGroups view=trios\ track ashkenazimTrio\ type vcfPhasedTrio\ vcfChildSample HG002|son\ vcfDoFilter off\ vcfDoMaf off\ vcfDoQual off\ vcfParentSamples HG003|father,HG004|mother\ vcfUseAltSampleNames on\ cons100wayViewphyloP Basewise Conservation (phyloP) bed 4 Vertebrate Multiz Alignment & Conservation (100 Species) 2 1 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Vertebrate Multiz Alignment & Conservation (100 Species)\ parent cons100way\ shortLabel Basewise Conservation (phyloP)\ track cons100wayViewphyloP\ view phyloP\ viewLimits -20.0:9.869\ viewLimitsMax -20:0.869\ visibility full\ wgEncodeGencodeBasicV20 Basic genePred Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 20 (Ensembl 76)\ parent wgEncodeGencodeV20ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV20\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV22 Basic genePred Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 22 (Ensembl 79)\ parent wgEncodeGencodeV22ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV22\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV23 Basic genePred Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 23 (Ensembl 81)\ parent wgEncodeGencodeV23ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV23\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV24 Basic genePred Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 24 (Ensembl 83)\ parent wgEncodeGencodeV24ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV24\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV25 Basic genePred Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 25 (Ensembl 85)\ parent wgEncodeGencodeV25ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV25\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV26 Basic genePred Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 26 (Ensembl 88)\ parent wgEncodeGencodeV26ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV26\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV27 Basic genePred Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 27 (Ensembl 90)\ parent wgEncodeGencodeV27ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV27\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV28 Basic genePred Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 28 (Ensembl 92)\ parent wgEncodeGencodeV28ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV28\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV29 Basic genePred Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 29 (Ensembl 94)\ parent wgEncodeGencodeV29ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV29\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV30 Basic genePred Basic Gene Annotation Set from GENCODE Version 30 (Ensembl 96) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 30 (Ensembl 96)\ parent wgEncodeGencodeV30ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV30\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV31 Basic genePred Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 31 (Ensembl 97)\ parent wgEncodeGencodeV31ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV31\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV32 Basic genePred Basic Gene Annotation Set from GENCODE Version 32 (Ensembl 98) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 32 (Ensembl 98)\ parent wgEncodeGencodeV32ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV32\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV33 Basic genePred Basic Gene Annotation Set from GENCODE Version 33 (Ensembl 99) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 33 (Ensembl 99)\ parent wgEncodeGencodeV33ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV33\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV34 Basic genePred Basic Gene Annotation Set from GENCODE Version 34 (Ensembl 100) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 34 (Ensembl 100)\ parent wgEncodeGencodeV34ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV34\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV35 Basic genePred Basic Gene Annotation Set from GENCODE Version 35 (Ensembl 101) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 35 (Ensembl 101)\ parent wgEncodeGencodeV35ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV35\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV36 Basic genePred Basic Gene Annotation Set from GENCODE Version 36 (Ensembl 102) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 36 (Ensembl 102)\ parent wgEncodeGencodeV36ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV36\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV37 Basic genePred Basic Gene Annotation Set from GENCODE Version 37 (Ensembl 103) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 37 (Ensembl 103)\ parent wgEncodeGencodeV37ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV38 Basic genePred Basic Gene Annotation Set from GENCODE Version 38 (Ensembl 104) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 38 (Ensembl 104)\ parent wgEncodeGencodeV38ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV38\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV39 Basic genePred Basic Gene Annotation Set from GENCODE Version 39 (Ensembl 105) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 39 (Ensembl 105)\ parent wgEncodeGencodeV39ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV39\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV40 Basic genePred Basic Gene Annotation Set from GENCODE Version 40 (Ensembl 106) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 40 (Ensembl 106)\ parent wgEncodeGencodeV40ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV40\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV41 Basic genePred Basic Gene Annotation Set from GENCODE Version 41 (Ensembl 107) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 41 (Ensembl 107)\ parent wgEncodeGencodeV41ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV41\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV42 Basic genePred Basic Gene Annotation Set from GENCODE Version 42 (Ensembl 108) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 42 (Ensembl 108)\ parent wgEncodeGencodeV42ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV42\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV43 Basic genePred Basic Gene Annotation Set from GENCODE Version 43 (Ensembl 109) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 43 (Ensembl 109)\ parent wgEncodeGencodeV43ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV43\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV44 Basic genePred Basic Gene Annotation Set from GENCODE Version 44 (Ensembl 110) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 44 (Ensembl 110)\ parent wgEncodeGencodeV44ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV44\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeBasicV45 Basic genePred Basic Gene Annotation Set from GENCODE Version 45 (Ensembl 111) 3 1 0 0 0 127 127 127 0 0 0 genes 1 longLabel Basic Gene Annotation Set from GENCODE Version 45 (Ensembl 111)\ parent wgEncodeGencodeV45ViewGenes on\ priority 1\ shortLabel Basic\ subGroups view=aGenes name=Basic\ track wgEncodeGencodeBasicV45\ trackHandler wgEncodeGencode\ type genePred\ bismap24Pos Bismap S24 + bigBed 6 Single-read mappability with 24-mers after bisulfite conversion (forward strand) 1 1 240 20 80 247 137 167 0 0 0 map 1 bigDataUrl /gbdb/hg38/hoffmanMappability/k24.C2T-Converted.bb\ color 240,20,80\ longLabel Single-read mappability with 24-mers after bisulfite conversion (forward strand)\ parent bismapBigBed on\ priority 1\ shortLabel Bismap S24 +\ subGroups view=SR\ track bismap24Pos\ visibility dense\ cnvDevDelayCase Case gvf Copy Number Variation Morbidity Map of Developmental Delay - Case 3 1 0 0 0 127 127 127 0 0 0 phenDis 1 longLabel Copy Number Variation Morbidity Map of Developmental Delay - Case\ parent cnvDevDelay on\ priority 1\ shortLabel Case\ track cnvDevDelayCase\ type gvf\ visibility pack\ clinGenHaplo ClinGen Haploinsufficiency bigBed 9 + ClinGen Dosage Sensitivity Map - Haploinsufficiency 3 1 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg38/bbi/clinGen/clinGenHaplo.bb\ filterLabel.haploScore Dosage Sensitivity Score\ filterValues.haploScore 0|No evidence available,1|Little evidence for dosage pathogenicity,2|Some evidence for dosage pathogenicity,3|Sufficient evidence for dosage pathogenicity,30|Gene associated with autosomal recessive phenotype,40|Dosage sensitivity unlikely\ longLabel ClinGen Dosage Sensitivity Map - Haploinsufficiency\ mouseOverField _mouseOver\ parent clinGenComp on\ priority 1\ shortLabel ClinGen Haploinsufficiency\ showCfg on\ track clinGenHaplo\ type bigBed 9 +\ urls url="$$" PMID1="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID2="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID3="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID4="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID5="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID6="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" mondoID="https://monarchinitiative.org/disease/$$"\ visibility pack\ clinvarMain ClinVar SNVs bigBed 12 + ClinVar Short Variants < 50bp 0 1 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg38/bbi/clinvar/clinvarMain.bb\ filter._varLen 0\ filterByRange._varLen on\ filterLabel._originCode Alelle Origin\ filterLimits._varLen 0:49\ filterType._allTypeCode multiple\ filterType._clinSignCode multiple\ filterType._originCode multiple\ filterValues._allTypeCode SUBST|single nucleotide variant - SUBST,STRUCT|translocation and fusion - STRUCT,LOSS|deletion and copy loss - LOSS,GAIN|duplication and copy gain - GAIN,INS|indel and insertion - INS,INV|inversion - INV,SEQALT|undetermined - SEQALT,SEQLEN|repeat change - SEQLEN\ filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,RF|risk factor,OT|other,VUS|vus\ filterValues._originCode GERM|germline,SOM|somatic,GERMSOM|germline/somatic,UNK|unknown\ filterValues.molConseq genic downstream transcript variant|genic downstream transcript variant,no sequence alteration|no sequence alteration,inframe indel|inframe indel,stop lost|stop lost,genic upstream transcript variant|genic upstream transcript variant,initiatior codon variant|initiatior codon variant,inframe insertion|inframe insertion,inframe deletion|inframe deletion,splice acceptor variant|splice acceptor variant,splice donor variant|splice donor variant,5 prime UTR variant|5 prime UTR variant,nonsense|nonsense,non-coding transcript variant|non-coding transcript variant,3 prime UTR variant|3 prime UTR variant,frameshift variant|frameshift variant,intron variant|intron variant,synonymous variant|synonymous variant,missense variant|missense variant,|unknown,initiator codon variant|initiator codon variant\ group phenDis\ itemRgb on\ longLabel ClinVar Short Variants < 50bp\ maxWindowCoverage 10000000\ mouseOverField _mouseOver\ noScoreFilter on\ parent clinvar\ priority 1\ searchIndex _dbVarSsvId\ shortLabel ClinVar SNVs\ showCfg on\ skipFields rcvAcc\ track clinvarMain\ type bigBed 12 +\ urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/snp/$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"\ visibility hide\ dbSnp153Common Common dbSNP(153) bigDbSnp Common (1000 Genomes Phase 3 MAF >= 1%) Short Genetic Variants from dbSNP Release 153 1 1 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg38/snp/dbSnp153Common.bb\ defaultGeneTracks knownGene\ longLabel Common (1000 Genomes Phase 3 MAF >= 1%) Short Genetic Variants from dbSNP Release 153\ parent dbSnp153ViewVariants on\ priority 1\ shortLabel Common dbSNP(153)\ subGroups view=variants\ track dbSnp153Common\ dbSnp155Common Common dbSNP(155) bigDbSnp Common (1000 Genomes Phase 3 MAF >= 1%) Short Genetic Variants from dbSNP Release 155 1 1 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg38/snp/dbSnp155Common.bb\ defaultGeneTracks knownGene\ longLabel Common (1000 Genomes Phase 3 MAF >= 1%) Short Genetic Variants from dbSNP Release 155\ parent dbSnp155ViewVariants on\ priority 1\ shortLabel Common dbSNP(155)\ showCfg on\ subGroups view=variants\ track dbSnp155Common\ cons100way Conservation bed 4 Vertebrate Multiz Alignment & Conservation (100 Species) 2 1 0 0 0 127 127 127 0 0 0

\ Downloads for data in this track are available:\

\ \

Description

\

\ This track shows multiple alignments of 100 vertebrate\ species and measurements of evolutionary conservation using\ two methods (phastCons and phyloP) from the\ \ PHAST package, for all species.\ The multiple alignments were generated using multiz and\ other tools in the UCSC/Penn State Bioinformatics\ comparative genomics alignment pipeline.\ Conserved elements identified by phastCons are also displayed in\ this track.\ PHAST/Multiz are built from chains ("alignable") and nets ("syntenic"), see the documentation of the Chain/Net tracks for a description of the complete\ alignment process.\

\

\ PhastCons is a hidden Markov model-based method that estimates the probability that each\ nucleotide belongs to a conserved element, based on the multiple alignment.\ It considers not just each individual alignment column, but also its\ flanking columns. By contrast, phyloP separately measures conservation at\ individual columns, ignoring the effects of their neighbors. As a\ consequence, the phyloP plots have a less smooth appearance than the\ phastCons plots, with more "texture" at individual sites. The two methods\ have different strengths and weaknesses. PhastCons is sensitive to "runs"\ of conserved sites, and is therefore effective for picking out conserved\ elements. PhyloP, on the other hand, is more appropriate for evaluating\ signatures of selection at particular nucleotides or classes of nucleotides\ (e.g., third codon positions, or first positions of miRNA target sites).\

\

\ Another important difference is that phyloP can measure acceleration\ (faster evolution than expected under neutral drift) as well as\ conservation (slower than expected evolution). In the phyloP plots, sites\ predicted to be conserved are assigned positive scores (and shown in blue),\ while sites predicted to be fast-evolving are assigned negative scores (and\ shown in red). The absolute values of the scores represent -log p-values\ under a null hypothesis of neutral evolution. The phastCons scores, by\ contrast, represent probabilities of negative selection and range between 0\ and 1.\

\

\ Both phastCons and phyloP treat alignment gaps and unaligned nucleotides as\ missing data, and both were run with the same parameters.\

\

\ See also: lastz parameters and other details\ and chain minimum score and gap parameters used in these alignments.\

\ \

\ UCSC has repeatmasked and aligned all genome assemblies, and\ provides all the sequences for download. For genome assemblies\ not available in the genome browser, there are alternative assembly hub\ genome browsers. Missing sequence in any assembly\ is highlighted in the track display by regions of yellow when\ zoomed out and by Ns when displayed at base level (see Gap Annotation, below).

\

\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
Primate subset
OrganismSpeciesRelease dateUCSC versionAlignment type
BaboonPapio hamadryasMar 2012Baylor Panu_2.0/papAnu2Reciprocal best net
BushbabyOtolemur garnettiiMar 2011Broad/otoGar3Syntenic net
ChimpPan troglodytesFeb 2011CSAC 2.1.4/panTro4Syntenic net
Crab-eating macaqueMacaca fascicularisJun 2013Macaca_fascicularis_5.0/macFas5Syntenic net
GibbonNomascus leucogenysOct 2012GGSC Nleu3.0/nomLeu3Syntenic net
GorillaGorilla gorilla gorillaMay 2011gorGor3.1/gorGor3Reciprocal best net
Green monkeyChlorocebus sabaeusMar 2014Chlorocebus_sabeus 1.1/chlSab2Syntenic net
HumanHomo sapiensDec 2013GRCh38/hg38reference species
MarmosetCallithrix jacchusMar 2009WUGSC 3.2/calJac3Syntenic net
OrangutanPongo pygmaeus abeliiJuly 2007WUGSC 2.0.2/ponAbe2Reciprocal best net
RhesusMacaca mulattaOct 2010BGI CR_1.0/rheMac3Syntenic net
Squirrel monkeySaimiri boliviensisOct 2011Broad/saiBol1Syntenic net
Euarchontoglires subset
Brush-tailed ratOctodon degusApr 2012OctDeg1.0/octDeg1Syntenic net
ChinchillaChinchilla lanigeraMay 2012 ChiLan1.0/chiLan1Syntenic net
Chinese hamsterCricetulus griseusJul 2013C_griseus_v1.0/criGri1Syntenic net
Chinese tree shrewTupaia chinensisJan 2013TupChi_1.0/tupChi1Syntenic net
Golden hamsterMesocricetus auratusMar 2013MesAur1.0/mesAur1Syntenic net
Guinea pigCavia porcellusFeb 2008Broad/cavPor3Syntenic net
Lesser Egyptian jerboaJaculus jaculusMay 2012JacJac1.0/jacJac1Syntenic net
MouseMus musculusDec 2011GRCm38/mm10Syntenic net
Naked mole-ratHeterocephalus glaberJan 2012Broad HetGla_female_1.0/hetGla2Syntenic net
PikaOchotona princepsMay 2012OchPri3.0/ochPri3Syntenic net
Prairie voleMicrotus ochrogasterOct 2012MicOch1.0/micOch1Syntenic net
RabbitOryctolagus cuniculusApr 2009Broad/oryCun2Syntenic net
RatRattus norvegicusJul 2014RGSC 6.0/rn6Syntenic net
SquirrelSpermophilus tridecemlineatusNov 2011Broad/speTri2Syntenic net
Laurasiatheria subset
AlpacaVicugna pacosMar 2013Vicugna_pacos-2.0.1/vicPac2Syntenic net
Bactrian camelCamelus ferusDec 2011CB1/camFer1Syntenic net
Big brown batEptesicus fuscusJul 2012EptFus1.0/eptFus1Syntenic net
Black flying-foxPteropus alectoAug 2012ASM32557v1/pteAle1Syntenic net
CatFelis catusNov 2014ICGSC Felis_catus 8.0/felCat8Syntenic net
CowBos taurusJun 2014Bos_taurus_UMD_3.1.1/bosTau8Syntenic net
David's myotis batMyotis davidiiAug 2012ASM32734v1/myoDav1Syntenic net
DogCanis lupus familiarisSep 2011Broad CanFam3.1/canFam3Syntenic net
DolphinTursiops truncatusOct 2011Baylor Ttru_1.4/turTru2Reciprocal best net
Domestic goatCapra hircusMay 2012CHIR_1.0/capHir1Syntenic net
Ferret Mustela putorius furoApr 2011MusPutFur1.0/musFur1Syntenic net
HedgehogErinaceus europaeusMay 2012EriEur2.0/eriEur2Syntenic net
HorseEquus caballusSep 2007Broad/equCab2Syntenic net
Killer whaleOrcinus orcaJan 2013Oorc_1.1/orcOrc1Syntenic net
MegabatPteropus vampyrusJul 2008Broad/pteVam1Reciprocal best net
Little brown batMyotis lucifugusJul 2010Broad Institute Myoluc2.0/myoLuc2Syntenic net
Pacific walrusOdobenus rosmarus divergensJan 2013Oros_1.0/odoRosDiv1Syntenic net
PandaAiluropoda melanoleucaDec 2009BGI-Shenzhen 1.0/ailMel1Syntenic net
PigSus scrofaAug 2011SGSC Sscrofa10.2/susScr3Syntenic net
SheepOvis ariesAug 2012ISGC Oar_v3.1/oviAri3Syntenic net
ShrewSorex araneusAug 2008Broad/sorAra2Syntenic net
Star-nosed moleCondylura cristataMar 2012ConCri1.0/conCri1Syntenic net
Tibetan antelopePantholops hodgsoniiMay 2013PHO1.0/panHod1Syntenic net
Weddell sealLeptonychotes weddelliiMar 2013LepWed1.0/lepWed1Reciprocal best net
White rhinocerosCeratotherium simumMay 2012CerSimSim1.0/cerSim1Syntenic net
Afrotheria subset
AardvarkOrycteropus afer aferMay 2012OryAfe1.0/oryAfe1Syntenic net
Cape elephant shrewElephantulus edwardiiAug 2012EleEdw1.0/eleEdw1Syntenic net
Cape golden moleChrysochloris asiaticaAug 2012ChrAsi1.0/chrAsi1Syntenic net
ElephantLoxodonta africanaJul 2009Broad/loxAfr3Syntenic net
ManateeTrichechus manatus latirostrisOct 2011Broad v1.0/triMan1Syntenic net
TenrecEchinops telfairiNov 2012Broad/echTel2Syntenic net
Mammal subset
ArmadilloDasypus novemcinctusDec 2011Baylor/dasNov3Syntenic net
OpossumMonodelphis domesticaOct 2006Broad/monDom5Net
PlatypusOrnithorhynchus anatinusMar 2007WUGSC 5.0.1/ornAna1Reciprocal best net
Tasmanian devilSarcophilus harrisiiFeb 2011WTSI Devil_ref v7.0/sarHar1Net
WallabyMacropus eugeniiSep 2009TWGS Meug_1.1/macEug2Reciprocal best net
Aves subset
BudgerigarMelopsittacus undulatusSep 2011WUSTL v6.3/melUnd1Net
ChickenGallus gallusNov 2011ICGSC Gallus_gallus-4.0/galGal4Net
Collared flycatcherFicedula albicollisJun 2013FicAlb1.5/ficAlb2Net
Mallard duckAnas platyrhynchosApr 2013BGI_duck_1.0/anaPla1Net
Medium ground finchGeospiza fortisApr 2012GeoFor_1.0/geoFor1Net
ParrotAmazona vittataJan 2013AV1/amaVit1Net
Peregrine falconFalco peregrinusFeb 2013F_peregrinus_v1.0/falPer1Net
Rock pigeonColumba liviaFeb 2013Cliv_1.0/colLiv1Net
Saker falconFalco cherrugFeb 2013F_cherrug_v1.0/falChe1Net
Scarlet macawAra macaoJun 2013SMACv1.1/araMac1Net
Tibetan ground jayPseudopodoces humilisJan 2013PseHum1.0/pseHum1Net
TurkeyMeleagris gallopavoDec 2009TGC Turkey_2.01/melGal1Net
White-throated sparrowZonotrichia albicollisApr 2013ASM38545v1/zonAlb1Net
Zebra finchTaeniopygia guttataFeb 2013WashU taeGut324/taeGut2Net
Sarcopterygii subset
American alligatorAlligator mississippiensisAug 2012allMis0.2/allMis1Net
Chinese softshell turtlePelodiscus sinensisOct 2011PelSin_1.0/pelSin1Net
CoelacanthLatimeria chalumnaeAug 2011Broad/latCha1Net
Green seaturtleChelonia mydasMar 2013CheMyd_1.0/cheMyd1Net
LizardAnolis carolinensisMay 2010Broad AnoCar2.0/anoCar2Net
Painted turtleChrysemys picta belliiMar 2014v3.0.3/chrPic2Net
Spiny softshell turtleApalone spiniferaMay 2013ASM38561v1/apaSpi1Net
X. tropicalisXenopus tropicalisSep 2012JGI 7.0/xenTro7Net
Fish subset
Atlantic codGadus morhuaMay 2010Genofisk GadMor_May2010/gadMor1Net
Burton's mouthbreederHaplochromis burtoniOct 2011AstBur1.0/hapBur1Net
FuguTakifugu rubripesOct 2011FUGU5/fr3Net
LampreyPetromyzon marinusSep 2010WUGSC 7.0/petMar2Net
MedakaOryzias latipesOct 2005NIG/UT MEDAKA1/oryLat2Net
Mexican tetra (cavefish)Astyanax mexicanusApr 2013Astyanax_mexicanus-1.0.2/astMex1Net
Nile tilapiaOreochromis niloticusJan 2011Broad oreNil1.1/oreNil2Net
Princess of BurundiNeolamprologus brichardiMay 2011NeoBri1.0/neoBri1Net
Pundamilia nyerereiPundamilia nyerereiOct 2011PunNye1.0/punNye1Net
Southern platyfishXiphophorus maculatusJan 2012Xiphophorus_maculatus-4.4.2/xipMac1Net
Spotted garLepisosteus oculatusDec 2011LepOcu1/lepOcu1Net
SticklebackGasterosteus aculeatusFeb 2006Broad/gasAcu1Net
TetraodonTetraodon nigroviridisMar 2007Genoscope 8.0/tetNig2Net
Yellowbelly pufferfishTakifugu flavidusMay 2013version 1 of Takifugu flavidus genome/takFla1Net
Zebra mbunaMaylandia zebraMar 2012MetZeb1.1/mayZeb1Net
ZebrafishDanio rerioSep 2014GRCz10/danRer10Net

\ Table 1. Genome assemblies included in the 100-way Conservation track.
\

\ \

Display Conventions and Configuration

\

\ In full and pack display modes, conservation scores are displayed as a\ wiggle track (histogram) in which the height reflects the\ size of the score.\ The conservation wiggles can be configured in a variety of ways to\ highlight different aspects of the displayed information.\ Click the Graph configuration help link for an explanation\ of the configuration options.

\

\ Pairwise alignments of each species to the human genome are\ displayed below the conservation histogram as a grayscale density plot (in\ pack mode) or as a wiggle (in full mode) that indicates alignment quality.\ In dense display mode, conservation is shown in grayscale using\ darker values to indicate higher levels of overall conservation\ as scored by phastCons.

\

\ Checkboxes on the track configuration page allow selection of the\ species to include in the pairwise display.\ Note that excluding species from the pairwise display does not alter the\ the conservation score display.

\

\ To view detailed information about the alignments at a specific\ position, zoom the display in to 30,000 or fewer bases, then click on\ the alignment.

\ \

Gap Annotation

\

\ The Display chains between alignments configuration option\ enables display of gaps between alignment blocks in the pairwise alignments in\ a manner similar to the Chain track display. The following\ conventions are used:\

\ \

Genomic Breaks

\

\ Discontinuities in the genomic context (chromosome, scaffold or region) of the\ aligned DNA in the aligning species are shown as follows:\

\ \

Base Level

\

\ When zoomed-in to the base-level display, the track shows the base\ composition of each alignment. The numbers and symbols on the Gaps\ line indicate the lengths of gaps in the human sequence at those\ alignment positions relative to the longest non-human sequence.\ If there is sufficient space in the display, the size of the gap is shown.\ If the space is insufficient and the gap size is a multiple of 3, a\ "*" is displayed; other gap sizes are indicated by "+".

\

\ Codon translation is available in base-level display mode if the\ displayed region is identified as a coding segment. To display this annotation,\ select the species for translation from the pull-down menu in the Codon\ Translation configuration section at the top of the page. Then, select one of\ the following modes:\

\

\ Codon translation uses the following gene tracks as the basis for translation:\ \

\ \ \ \ \ \
Gene TrackSpecies
UCSC GenesHuman, Mouse
RefSeq GenesCow, Frog (X. tropicalis)
Ensembl Genes v73Atlantic cod, Bushbaby, Cat, Chicken, Chimp, Coelacanth, Dog, Elephant, Ferret, Fugu, Gorilla, Horse, Lamprey, Little brown bat, Lizard, Mallard duck, Marmoset, Medaka, Megabat, Orangutan, Panda, Pig, Platypus, Rat, Soft-shell Turtle, Southern platyfish, Squirrel, Tasmanian devil, Tetraodon, Zebrafish
no annotationAardvark, Alpaca, American alligator, Armadillo, Baboon, Bactrian camel, Big brown bat, Black flying-fox, Brush-tailed rat, Budgerigar, Burton's mouthbreeder, Cape elephant shrew, Cape golden mole, Chinchilla, Chinese hamster, Chinese tree shrew, Collared flycatcher, Crab-eating macaque, David's myotis (bat), Dolphin, Domestic goat, Gibbon, Golden hamster, Green monkey, Green seaturtle, Hedgehog, Killer whale, Lesser Egyptian jerboa, Manatee, Medium ground finch, Mexican tetra (cavefish), Naked mole-rat, Nile tilapia, Pacific walrus, Painted turtle, Parrot, Peregrine falcon, Pika, Prairie vole, Princess of Burundi, Pundamilia nyererei, Rhesus, Rock pigeon, Saker falcon, Scarlet Macaw, Sheep, Shrew, Spiny softshell turtle, Spotted gar, Squirrel monkey, Star-nosed mole, Tawny puffer fish, Tenrec, Tibetan antelope, Tibetan ground jay, Wallaby, Weddell seal, White rhinoceros, White-throated sparrow, Zebra Mbuna, Zebra finch
\ Table 2. Gene tracks used for codon translation.\

\ \

Methods

\

\ Pairwise alignments with the human genome were generated for\ each species using lastz from repeat-masked genomic sequence.\ Pairwise alignments were then linked into chains using a dynamic programming\ algorithm that finds maximally scoring chains of gapless subsections\ of the alignments organized in a kd-tree.\ The scoring matrix and parameters for pairwise alignment and chaining\ were tuned for each species based on phylogenetic distance from the reference.\ High-scoring chains were then placed along the genome, with\ gaps filled by lower-scoring chains, to produce an alignment net.\ For more information about the chaining and netting process and\ parameters for each species, see the description pages for the Chain and Net\ tracks.

\

\ An additional filtering step was introduced in the generation of the 100-way\ conservation track to reduce the number of paralogs and pseudogenes from the\ high-quality assemblies and the suspect alignments from the low-quality\ assemblies:\ the pairwise alignments of high-quality mammalian\ sequences (placental and marsupial) were filtered based on synteny;\ those for 2X mammalian genomes were filtered to retain only\ alignments of best quality in both the target and query ("reciprocal\ best").

\

\ The resulting best-in-genome pairwise alignments\ were progressively aligned using multiz/autoMZ,\ following the tree topology diagrammed above, to produce multiple alignments.\ The multiple alignments were post-processed to\ add annotations indicating alignment gaps, genomic breaks,\ and base quality of the component sequences.\ The annotated multiple alignments, in MAF format, are available for\ bulk download.\ An alignment summary table containing an entry for each\ alignment block in each species was generated to improve\ track display performance at large scales.\ Framing tables were constructed to enable\ visualization of codons in the multiple alignment display.

\ \

Phylogenetic Tree Model

\

\ Both phastCons and phyloP are phylogenetic methods that rely\ on a tree model containing the tree topology, branch lengths representing\ evolutionary distance at neutrally evolving sites, the background distribution\ of nucleotides, and a substitution rate matrix.\ The\ all-species tree model for this track was\ generated using the phyloFit program from the PHAST package\ (REV model, EM algorithm, medium precision) using multiple alignments of\ 4-fold degenerate sites extracted from the 100-way alignment\ (msa_view). The 4d sites were derived from the RefSeq (Reviewed+Coding) gene\ set, filtered to select single-coverage long transcripts.\

\

\ This same tree model was used in the phyloP calculations; however, the\ background frequencies were modified to maintain reversibility.\ The resulting tree model:\ all species.\

\

PhastCons Conservation

\

\ The phastCons program computes conservation scores based on a phylo-HMM, a\ type of probabilistic model that describes both the process of DNA\ substitution at each site in a genome and the way this process changes from\ one site to the next (Felsenstein and Churchill 1996, Yang 1995, Siepel and\ Haussler 2005). PhastCons uses a two-state phylo-HMM, with a state for\ conserved regions and a state for non-conserved regions. The value plotted\ at each site is the posterior probability that the corresponding alignment\ column was "generated" by the conserved state of the phylo-HMM. These\ scores reflect the phylogeny (including branch lengths) of the species in\ question, a continuous-time Markov model of the nucleotide substitution\ process, and a tendency for conservation levels to be autocorrelated along\ the genome (i.e., to be similar at adjacent sites). The general reversible\ (REV) substitution model was used. Unlike many conservation-scoring programs,\ phastCons does not rely on a sliding window\ of fixed size; therefore, short highly-conserved regions and long moderately\ conserved regions can both obtain high scores.\ More information about\ phastCons can be found in Siepel et al. 2005.

\

\ The phastCons parameters used were: expected-length=45,\ target-coverage=0.3, rho=0.3.

\ \

PhyloP Conservation

\

\ The phyloP program supports several different methods for computing\ p-values of conservation or acceleration, for individual nucleotides or\ larger elements (\ http://compgen.cshl.edu/phast/). Here it was used\ to produce separate scores at each base (--wig-scores option), considering\ all branches of the phylogeny rather than a particular subtree or lineage\ (i.e., the --subtree option was not used). The scores were computed by\ performing a likelihood ratio test at each alignment column (--method LRT),\ and scores for both conservation and acceleration were produced (--mode\ CONACC).\

\

Conserved Elements

\

\ The conserved elements were predicted by running phastCons with the\ --viterbi option. The predicted elements are segments of the alignment\ that are likely to have been "generated" by the conserved state of the\ phylo-HMM. Each element is assigned a log-odds score equal to its log\ probability under the conserved model minus its log probability under the\ non-conserved model. The "score" field associated with this track contains\ transformed log-odds scores, taking values between 0 and 1000. (The scores\ are transformed using a monotonic function of the form a * log(x) + b.) The\ raw log odds scores are retained in the "name" field and can be seen on the\ details page or in the browser when the track's display mode is set to\ "pack" or "full".\

\ \

Credits

\

This track was created using the following programs:\

\

\

The phylogenetic tree is based on Murphy et al. (2001) and general\ consensus in the vertebrate phylogeny community. Thanks to Giacomo Bernardi for\ help with the fish relationships.\

\ \

References

\ \

Phylo-HMMs, phastCons, and phyloP:

\

\ Felsenstein J, Churchill GA.\ A Hidden Markov Model approach to variation among sites in rate of\ evolution. Mol Biol Evol. 1996 Jan;13(1):93-104.\ PMID: 8583911\

\ \

\ Pollard KS, Hubisz MJ, Rosenbloom KR, Siepel A.\ \ Detection of nonneutral substitution rates on mammalian phylogenies.\ Genome Res. 2010 Jan;20(1):110-21.\ PMID: 19858363; PMC: PMC2798823\

\ \

\ Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K,\ Clawson H, Spieth J, Hillier LW, Richards S, et al.\ Evolutionarily conserved elements in vertebrate, insect, worm,\ and yeast genomes.\ Genome Res. 2005 Aug;15(8):1034-50.\ PMID: 16024819; PMC: PMC1182216\

\ \

\ Siepel A, Haussler D.\ Phylogenetic Hidden Markov Models.\ In: Nielsen R, editor. Statistical Methods in Molecular Evolution.\ New York: Springer; 2005. pp. 325-351.\ DOI: 10.1007/0-387-27733-1_12\

\ \

\ Yang Z.\ A space-time process model for the evolution of DNA\ sequences.\ Genetics. 1995 Feb;139(2):993-1005.\ PMID: 7713447; PMC: PMC1206396\

\ \

Chain/Net:

\

\ Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\ Evolution's cauldron:\ duplication, deletion, and rearrangement in the mouse and human genomes.\ Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9.\ PMID: 14500911; PMC: PMC208784\

\ \

Multiz:

\

\ Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, Roskin KM,\ Baertsch R, Rosenbloom K, Clawson H, Green ED, et al.\ Aligning multiple genomic sequences with the threaded blockset aligner.\ Genome Res. 2004 Apr;14(4):708-15.\ PMID: 15060014; PMC: PMC383317\

\ \

Lastz (formerly Blastz):

\

\ Chiaromonte F, Yap VB, Miller W.\ Scoring pairwise genomic sequence alignments.\ Pac Symp Biocomput. 2002:115-26.\ PMID: 11928468\

\ \

\ Harris RS.\ Improved pairwise alignment of genomic DNA.\ Ph.D. Thesis. Pennsylvania State University, USA. 2007.\

\ \

\ Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC,\ Haussler D, Miller W.\ Human-mouse alignments with BLASTZ.\ Genome Res. 2003 Jan;13(1):103-7.\ PMID: 12529312; PMC: PMC430961\

\ \ \

Phylogenetic Tree:

\

\ Murphy WJ, Eizirik E, O'Brien SJ, Madsen O, Scally M, Douady CJ, Teeling E,\ Ryder OA, Stanhope MJ, de Jong WW, Springer MS.\ Resolution of the early placental mammal radiation using Bayesian phylogenetics.\ Science. 2001 Dec 14;294(5550):2348-51.\ PMID: 11743200\

\ compGeno 1 compositeTrack on\ dragAndDrop subTracks\ group compGeno\ longLabel Vertebrate Multiz Alignment & Conservation (100 Species)\ priority 1\ shortLabel Conservation\ subGroup1 view Views align=Multiz_Alignments phyloP=Basewise_Conservation_(phyloP) phastcons=Element_Conservation_(phastCons) elements=Conserved_Elements\ track cons100way\ type bed 4\ visibility full\ cons100wayViewelements Conserved Elements bed 4 Vertebrate Multiz Alignment & Conservation (100 Species) 0 1 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Vertebrate Multiz Alignment & Conservation (100 Species)\ parent cons100way\ shortLabel Conserved Elements\ track cons100wayViewelements\ view elements\ visibility hide\ covidHgiGwasC2 COVID GWAS bigLolly 9 + COVID GWAS from the COVID-19 Host Genetics Initiative (6696 cases, 18 studies) 0 1 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22, varRep 1 bigDataUrl /gbdb/hg38/covidHgiGwas/covidHgiGwasC2.hg38.bb\ longLabel COVID GWAS from the COVID-19 Host Genetics Initiative (6696 cases, 18 studies)\ parent covidHgiGwas on\ shortLabel COVID GWAS\ track covidHgiGwasC2\ cpgIslandExt CpG Islands bed 4 + CpG Islands (Islands < 300 Bases are Light Green) 3 1 0 100 0 128 228 128 0 0 0

Description

\ \

CpG islands are associated with genes, particularly housekeeping\ genes, in vertebrates. CpG islands are typically common near\ transcription start sites and may be associated with promoter\ regions. Normally a C (cytosine) base followed immediately by a \ G (guanine) base (a CpG) is rare in\ vertebrate DNA because the Cs in such an arrangement tend to be\ methylated. This methylation helps distinguish the newly synthesized\ DNA strand from the parent strand, which aids in the final stages of\ DNA proofreading after duplication. However, over evolutionary time,\ methylated Cs tend to turn into Ts because of spontaneous\ deamination. The result is that CpGs are relatively rare unless\ there is selective pressure to keep them or a region is not methylated\ for some other reason, perhaps having to do with the regulation of gene\ expression. CpG islands are regions where CpGs are present at\ significantly higher levels than is typical for the genome as a whole.

\ \

\ The unmasked version of the track displays potential CpG islands\ that exist in repeat regions and would otherwise not be visible\ in the repeat masked version.\

\ \

\ By default, only the masked version of the track is displayed. To view the\ unmasked version, change the visibility settings in the track controls at\ the top of this page.\

\ \

Methods

\ \

CpG islands were predicted by searching the sequence one base at a\ time, scoring each dinucleotide (+17 for CG and -1 for others) and\ identifying maximally scoring segments. Each segment was then\ evaluated for the following criteria:\ \

\

\

\ The entire genome sequence, masking areas included, was\ used for the construction of the track Unmasked CpG.\ The track CpG Islands is constructed on the sequence after\ all masked sequence is removed.\

\ \

The CpG count is the number of CG dinucleotides in the island. \ The Percentage CpG is the ratio of CpG nucleotide bases\ (twice the CpG count) to the length. The ratio of observed to expected \ CpG is calculated according to the formula (cited in \ Gardiner-Garden et al. (1987)):\ \ 

    Obs/Exp CpG = Number of CpG * N / (Number of C * Number of G)
\ \ where N = length of sequence.

\

\ The calculation of the track data is performed by the following command sequence:\ 

\
twoBitToFa assembly.2bit stdout | maskOutFa stdin hard stdout \\\
  | cpg_lh /dev/stdin 2> cpg_lh.err \\\
    |  awk '{$2 = $2 - 1; width = $3 - $2;  printf("%s\\t%d\\t%s\\t%s %s\\t%s\\t%s\\t%0.0f\\t%0.1f\\t%s\\t%s\\n", $1, $2, $3, $5, $6, width, $6, width*$7*0.01, 100.0*2*$6/width, $7, $9);}' \\\
     | sort -k1,1 -k2,2n > cpgIsland.bed\
\ The unmasked track data is constructed from\ twoBitToFa -noMask output for the twoBitToFa command.\

\ \

Data access

\

\ CpG islands and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator.\ All the tables can also be queried directly from our public MySQL\ servers, with more information available on our\ help page as well as on\ our blog.

\

\ The source for the cpg_lh program can be obtained from\ src/utils/cpgIslandExt/.\ The cpg_lh program binary can be obtained from: http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/cpg_lh (choose "save file")\

\ \

Credits

\ \

This track was generated using a modification of a program developed by G. Miklem and L. Hillier \ (unpublished).

\ \

References

\ \

\ Gardiner-Garden M, Frommer M.\ \ CpG islands in vertebrate genomes.\ J Mol Biol. 1987 Jul 20;196(2):261-82.\ PMID: 3656447\

\ regulation 1 html cpgIslandSuper\ longLabel CpG Islands (Islands < 300 Bases are Light Green)\ parent cpgIslandSuper pack\ priority 1\ shortLabel CpG Islands\ track cpgIslandExt\ cq56Vcf CQ-56 Variants vcfTabix CQ-56 Variants 0 1 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/problematic/highRepro/CQ-56.sort.vcf.gz\ longLabel CQ-56 Variants\ parent highReproVcfs\ shortLabel CQ-56 Variants\ subGroups view=vcfs\ track cq56Vcf\ type vcfTabix\ crossTissueMapsTissueCellType Cross Tissue Nuclei bigBarChart Cross tissue nuclei RNA by tissue and cell type 3 1 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=tabula-sapiens+all&gene=$

\ Description

\

\ This track collection shows data from \ Single-nucleus cross-tissue molecular reference maps toward\ understanding disease gene function. The dataset covers ~200,000 single nuclei\ from a total of 16 human donors across 25 samples, using 4 different sample preparation\ protocols followed by droplet based single-cell RNA-seq. The samples were obtained from\ frozen tissue as part of the Genotype-Tissue Expression (GTEx) project.\ Samples were taken from the esophagus, skeletal muscle, heart, lung, prostate, breast,\ and skin. The dataset includes 43 broad cell classes, some specific to certain tissues\ and some shared across all tissue types.\

\ \

\ This track collection contains three bar chart tracks of RNA expression. The first track,\ Cross Tissue Nuclei, allows\ cells to be grouped together and faceted on up to 4 categories: tissue, cell class, cell subclass,\ and cell type. The second track,\ Cross Tissue Details, allows\ cells to be grouped together and faceted on up to 7 categories: tissue, cell class, cell subclass,\ cell type, granular cell type, sex, and donor. The third track,\ GTEx Immune Atlas,\ allows cells to be grouped together and faceted on up to 5 categories: tissue, cell type, cell\ class, sex, and donor.\

\ \

\ Please see the\ GTEx portal\ for further interactive displays and additional data.

\ \

Display Conventions and Configuration

\

\ Tissue-cell type combinations in the Full and Combined tracks are\ colored by which cell type they belong to in the below table:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \
ColorCell Type
Endothelial
Epithelial
Glia
Immune
Neuron
Stromal
Other
\

\ \

\ Tissue-cell type combinations in the Immune Atlas track are shaded according\ to the below table:\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
ColorCell Type
Inflammatory Macrophage
Lung Macrophage
Monocyte/Macrophage FCGR3A High
Monocyte/Macrophage FCGR3A Low
Macrophage HLAII High
Macrophage LYVE1 High
Proliferating Macrophage
Dendritic Cell 1
Dendritic Cell 2
Mature Dendritic Cell
Langerhans
CD14+ Monocyte
CD16+ Monocyte
LAM-like
Other
\

\ \

Methods

\

\ Using the previously collected tissue samples from the Genotype-Tissue Expression\ project, nuclei were isolated using four different protocols and sequenced\ using droplet based single cell RNA-seq. CellBender v2.1 and other standard quality\ control techniques were applied, resulting in 209,126 nuclei profiles across eight\ tissues, with a mean of 918 genes and 1519 transcripts per profile.\

\ \

\ Data from all samples was integrated with a conditional variation autoencoder\ in order to correct for multiple sources of variation like sex, and protocol\ while preserving tissue and cell type specific effects.\

\ \

\ For detailed methods, please refer to Eraslan et al, or the\ \ GTEx portal website.\

\ \

UCSC Methods

\

\ The gene expression files were downloaded from the\ \ GTEx portal. The UCSC command line utilities matrixClusterColumns,\ matrixToBarChartBed, and bedToBigBed were used to transform\ these into a bar chart format bigBed file that can be visualized.\ The UCSC utilities can be found on\ our download server.\

\ \

Data Access

\

\ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions or our Data Access FAQ for more\ information.

\ \

Credits

\

Thanks to the GTEx Consortium for creating and analyzing these data.

\ \

References

\

\ Eraslan G, Drokhlyansky E, Anand S, Fiskin E, Subramanian A, Slyper M, Wang J, Van Wittenberghe N,\ Rouhana JM, Waldman J et al.\ \ Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function.\ Science. 2022 May 13;376(6594):eabl4290.\ PMID: 35549429; PMC: PMC9383269\

\ singleCell 1 barChartCategoryUrl /gbdb/hg38/bbi/crossTissueMaps/tissue_cell_type.categories\ barChartFacets tissue,cell_class,cell_subclass,cell_type\ barChartMerge on\ barChartMetric gene/genome\ barChartStatsUrl /gbdb/hg38/bbi/crossTissueMaps/tissue_cell_type.facets\ barChartStretchToItem on\ barChartUnit parts per million\ bigDataUrl /gbdb/hg38/bbi/crossTissueMaps/tissue_cell_type.bb\ defaultLabelFields name\ html crossTissueMaps\ labelFields name,name2\ longLabel Cross tissue nuclei RNA by tissue and cell type\ parent crossTissueMaps\ priority 1\ shortLabel Cross Tissue Nuclei\ track crossTissueMapsTissueCellType\ type bigBarChart\ url https://cells.ucsc.edu/?ds=tabula-sapiens+all&gene=$\ urlLabel View on the UCSC Cell Browser: $\ visibility pack\ iscaCuratedBenign Curated Ben gvf ClinGen CNVs: Curated Benign 3 1 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/?term=$$ phenDis 1 longLabel ClinGen CNVs: Curated Benign\ parent iscaViewDetail off\ shortLabel Curated Ben\ subGroups view=cnv class=ben level=cur\ track iscaCuratedBenign\ dbVar_common_1000g dbVar Curated 1000 Genomes SVs bigBed 9 + . NCBI dbVar Curated Common SVs: all populations from 1000 Genomes 3 1 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg38/bbi/dbVar/common_1000g.bb\ longLabel NCBI dbVar Curated Common SVs: all populations from 1000 Genomes\ parent dbVar_common on\ shortLabel dbVar Curated 1000 Genomes SVs\ track dbVar_common_1000g\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ dbVar_conflict_pathogenic dbVar Curated Conflict SVs bigBed 9 + . NCBI dbVar Curated Common SVs: Conflicts with Pathogenic 3 1 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg38/bbi/dbVar/conflict_pathogenic.bb\ longLabel NCBI dbVar Curated Common SVs: Conflicts with Pathogenic\ parent dbVar_conflict on\ shortLabel dbVar Curated Conflict SVs\ track dbVar_conflict_pathogenic\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ dgvMerged DGV Struct Var bigBed 9 + Database of Genomic Variants: Structural Var Regions (CNV, Inversion, In/del) 0 1 0 0 0 127 127 127 0 0 0 http://dgv.tcag.ca/dgv/app/variant?id=$$&ref=$D varRep 1 bigDataUrl /gbdb/hg38/dgv/dgvMerged.bb\ dataVersion 2020-02-25\ filter._size 1:9734324\ filterByRange._size on\ filterLabel._size Genomic size of variant\ filterValues.varType complex,deletion,duplication,gain,gain+loss,insertion,inversion,loss,mobile element insertion,novel sequence insertion,sequence alteration,tandem duplication\ longLabel Database of Genomic Variants: Structural Var Regions (CNV, Inversion, In/del)\ mouseOver ID:$name; Position; $chrom:${chromStart}-${chromEnd}; Size:$_size; Type:$varType; Affected genes:$genes\ parent dgvPlus on\ priority 1\ searchIndex name\ shortLabel DGV Struct Var\ track dgvMerged\ type bigBed 9 +\ cons100wayViewphastcons Element Conservation (phastCons) bed 4 Vertebrate Multiz Alignment & Conservation (100 Species) 0 1 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Vertebrate Multiz Alignment & Conservation (100 Species)\ parent cons100way\ shortLabel Element Conservation (phastCons)\ track cons100wayViewphastcons\ view phastcons\ visibility hide\ encodeCcreCombined ENCODE cCREs bigBed 9 + ENCODE Candidate Cis-Regulatory Elements (cCREs) combined from all cell types 1 1 0 0 0 127 127 127 0 0 0 https://screen-v2.wenglab.org/search/?q=$$&assembly=GRCh38

Description

\

\ This track displays the ENCODE Registry of candidate cis-Regulatory Elements (cCREs) \ in the human genome, a total of 926,535 elements identified and classified by the ENCODE Data \ Analysis Center according to biochemical signatures.\ cCREs are the subset of representative DNase hypersensitive sites across ENCODE and\ Roadmap Epigenomics samples that are supported \ by either histone modifications (H3K4me3 and H3K27ac) or CTCF-binding data.\ The Registry of cCREs is one of the core components of the integrative level of the\ ENCODE Encyclopedia of DNA Elements.

\ \

\ Additional exploration of the cCRE's and underlying raw ENCODE data is provided by the\ \ SCREEN\ (Search Candidate cis-Regulatory Elements) web tool,\ designed specifically for the Registry, accessible by linkouts from the track details page.\ The cCREs identified in the mouse genome are available in a companion track, \ here.

\ \ \ \

Display Conventions and Configuration

\

\ CCREs are colored and labeled according to classification by regulatory signature:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
ColorUCSC labelENCODE classificationENCODE label
redprompromoter-like signaturePLS
orangeenhPproximal enhancer-like signaturepELS
yellowenhDdistal enhancer-like signaturedELS
pinkK4m3DNase-H3K4me3DNase-H3K4me3
blueCTCFCTCF-onlyCTCF-only
\

\

\ The DNase-H3K4me3 elements are those with promoter-like biochemical signature that\ are not within 200bp of an annotated TSS.\

\ \

Methods

\

\ All individual DNase hypsersensitive sites (DHSs) identified from 706 DNase-seq experiments\ in humans (a total of 93 million sites from 706 experiments) were iteratively clustered\ and filtered for the highest signal across all experiments, producing \ representative DHSs (rDHSs), with a total of 2.2 million such sites in human.\ The highest signal elements from this set that were also supported by high H3K4me3, H3K27ac \ and/or CTCF ChIP-seq signals were designated cCRE's (a total of 926,535 in human).\

\

\ Classification of cCRE's was performed based on the following criteria:\

    \
  1. cCREs with promoter-like signatures (cCRE-PLS) fall within 200 bp of an annotated GENCODE TSS\ and have high DNase and H3K4me3 signals.
    2. \
  2. cCREs with enhancer-like signatures (cCRE-ELS) have high DNase and H3K27ac with low H3K4me3\ max-Z score if they are within 200 bp of an annotated TSS. The subset of cCREs-ELS within 2 kb\ of a TSS is denoted proximal (cCRE-pELS), while the remaining subset is denoted distal\ (cCRE-dELS).
    3. \
  3. DNase-H3K4me3 cCREs have high H3K4me3 max-Z scores but low H3K27ac max-Z scores and do not\ fall within 200 bp of a TSS.
    4. \
  4. CTCF-only cCREs have high DNase and CTCF and low H3K4me3 and H3K27ac.
    5. \
\ \ \ \

\ The GENCODE V24 (Ensembl 33) basic gene annotation set was used in this analysis.\ For further detail about the identification and classification of ENCODE cCREs see \ the About page of the\ SCREEN web tool.\

\ \

Data Access

\

\ The ENCODE accession numbers of the constituent datasets at the\ ENCODE Portal\ are available from the cCRE details page.\

\

\ The data in this track can be interactively explored with the \ Table Browser or the \ Data Integrator. \ The data can be accessed from scripts through our \ API, the track name is "encodeCcreCombined".\ \

\ For automated download and analysis, this annotation is stored in a bigBed file that\ can be downloaded from\ our download server.\ The file for this track is called encodeCcreCombined.bb. \ Individual regions or the whole genome annotation can be obtained using our tool \ bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. \ Instructions for downloading source code and binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, e.g.

\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/encode3/ccre/encodeCcreCombined.bb -chrom=chr21 -start=0 -end=100000000 stdout

\ \

Release Notes

\

\ This annotation is based on ENCODE data released on or before September 14, 2018.

\

\ Data from the Common fund supported\ Roadmap Epigenomics Mapping Consortium\ (REMC) were included for building the ENCODE cCREs. Please see the 2015 paper on their analysis\ of reference human genomes for more information.

\ \

Credits

\

\ This dataset was produced by the\ ENCODE Data Analysis Center\ (ZLab at UMass Medical Center). Please check the\ ZLab ENCODE Public Hubs\ for the most updated data.\ Thanks to Henry Pratt, Jill Moore, Michael Purcaro, and Zhiping Weng, PI for providing\ this data.\ Thanks also to the ENCODE Consortium, the ENCODE production laboratories, \ and the ENCODE Data Coordination Center for generating and processing the datasets used here.\

\ \

References

\

\ ENCODE Project Consortium.\ \ Expanded Encyclopedias of DNA Elements in the Human and Mouse Genomes.\ Nature. 2020 July 30;583(7818):699-710

\ \

\ ENCODE Project Consortium.\ \ An integrated encyclopedia of DNA elements in the human genome.\ Nature. 2012 Sep 6;489(7414):57-74.\ PMID: 22955616; PMC: PMC3439153\

\ \ ENCODE Project Consortium.\ \ A user's guide to the encyclopedia of DNA elements (ENCODE).\ PLoS Biol. 2011 Apr;9(4):e1001046.\ PMID: 21526222; PMC: PMC3079585\

\ \ regulation 1 bedNameLabel ENCODE Accession\ bigDataUrl /gbdb/hg38/encode3/ccre/encodeCcreCombined.bb\ darkerLabels on\ defaultLabelFields accessionLabel,ucscLabel\ filterLabel.ucscLabel cCRE classification\ filterValues.ucscLabel prom|promoter-like signature (PLS/prom),enhP|proximal enhancer-like signature (pELS/enhP),enhD|distal enhancer-like signature (dELS/enhD),CTCF|CTCF only (CTCF/CTCF-only),K4m3|DNase-H3K4me3 (DNase-H3K4me3/k4m3)\ group regulation\ itemRgb On\ labelFields accessionLabel,ucscLabel,encodeLabel\ longLabel ENCODE Candidate Cis-Regulatory Elements (cCREs) combined from all cell types\ mouseOverField description\ priority 1\ shortLabel ENCODE cCREs\ skipFields encodeLabel,ucscLabel,accessionLabel,description\ track encodeCcreCombined\ type bigBed 9 +\ url https://screen-v2.wenglab.org/search/?q=$$&assembly=GRCh38\ urlLabel cCRE details at ENCODE SCREEN:\ visibility dense\ wgEncodeReg ENCODE Regulation Integrated Regulation from ENCODE 0 1 0 0 0 127 127 127 0 0 0

Description

\

\ These tracks contain information relevant to the regulation of transcription from the\ ENCODE Project.\ \

    \
  • The Transcription track shows transcription\ levels assayed by sequencing of polyadenylated RNA from a variety of cell types.
    • \
  • The Layered H3K4Me1 and Layered H3K27Ac tracks show where modification of histone proteins\ is suggestive of enhancer and, to a lesser extent, other regulatory activity. These histone \ modifications, particularly H3K4Me1, are quite broad. The actual enhancers are typically just a \ small portion of the area marked by these histone modifications.
    • \
  • The Layered H3K4Me3 \ track shows a histone mark associated with promoters.
    • \
  • The DNase I Hypersensitivity tracks indicate\ where chromatin is hypersensitive to cutting by the DNase enzyme, which has \ been assayed in a large number of cell types. Regulatory regions, in general, tend to be \ DNase-sensitive, and promoters are particularly DNase-sensitive.
    • \
  • The Txn Factor ChIP\ tracks show DNA regions where transcription factors, proteins responsible for \ modulating gene transcription, bind as assayed by chromatin immunoprecipitation with antibodies \ specific to the transcription factor followed by sequencing of the precipitated DNA (ChIP-seq).
    • \
\

\ \

\ These tracks complement each other and together can shed much light on regulatory DNA. The histone\ marks are informative at a high level, but they have a resolution of just ~200 bases and do not\ provide much in the way of functional detail. The DNase hypersensitivity assay is higher in\ resolution at the DNA level and can be done on a large number of cell types since it's just \ a single assay. At the functional level, DNase hypersensitivity suggests that a \ region is very likely to be regulatory in nature, but provides little information beyond that.\ The transcription factor ChIP assay has a high resolution at the DNA level and, due to the very\ specific nature of the transcription factors, is often informative with respect to functional\ detail. However, since each transcription factor must be assayed separately, the information is\ only available for a limited number of transcription factors on a limited number of cell lines. \ Though each assay has its strengths and weaknesses, the fact that all of these assays are \ relatively independent of each other gives increased confidence when multiple tracks are \ suggesting a regulatory function for a region.\

\ \

\ For additional information, please click on the hyperlinks for the individual tracks above.\ Also note that additional histone marks and transcription information is available in other\ ENCODE tracks. This integrative supertrack just shows a selection of the most informative data of\ most general interest.\

\ \

Display Conventions

\

\ By default, the transcription and histone mark displays use a transparent overlay method of \ displaying data from a number of cell lines in a single track. Each of the cell lines in this track\ is associated with a particular color, and these colors are relatively light and saturated so\ as to work best with the transparent overlay. The color of the transcription and histone mark tracks\ match their versions from their lifted source on the hg19 assembly.

\

\ The DNase tracks, which were not lifted from hg19, are colored differently \ to reflect similarity of cell types. There are three DNase tracks starting with a transparent\ overlay DNase Signal Track to allow viewing signals from all 95 cell types in one track.\ The individual signals and the same coloring scheme can also be found in the DNase HS Track\ where processed peaks and hotspots are also called out as gray boxes with the darkness of\ each box reflecting the underlying signal value. Lastly, in the DNase Clusters track all observed\ hypersensitive regions in the different cell lines at the same location were clustered into a single box\ where a number to the left of the box indicates how many cell types showed a hypersensitivity \ region and the darkness of the grey box is proportional to the the maximum value seen from one of\ the underlying cell lines. Clicking on these item takes you to a details page where\ additional information displays, such as the list of cell types that combined to form\ the cluster in the DNase Clusters track.\

\ \

Data Access

\

\ The raw data for ENCODE 3 Regulation tracks can be accessed from \ \ Table Browser or combined with other data-sets through \ Data Integrator. For automated analysis and downloads, the track data files can be downloaded \ from our downloads server or queried\ using the JSON API or the \ Public SQL Individual regions or the whole genome \ annotation can be accessed as text using our utility bigBedToBed. Instructions for downloading \ the utility can be found \ here. That \ utility can also be used to obtain features within a given range, e.g. \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/wgEncodeRegDnase/wgEncodeRegDnaseUwA549Hotspot.broadPeak.bb -chrom=chr21 -start=0 -end=100000000 stdout

\

\ For sorting transcription factor binding sites by cell type, we recommend you use the following\ download \ file for hg38.\

\ \ \

Credits

\

\ Specific labs and contributors for these datasets are listed in the Credits section \ of the individual tracks in this super-track. The integrative view presented here was developed by Jim Kent at UCSC.

\ \

Data Use Policy

\

Users may freely download, analyze and publish results based on any ENCODE data without \ restrictions.\ Researchers using unpublished ENCODE data are encouraged to contact the data producers to discuss possible coordinated publications; however, this is optional.

\ Users of ENCODE datasets are requested to cite the ENCODE Consortium and ENCODE\ production laboratory(s) that generated the datasets used, as described in\ Citing ENCODE.

\ regulation 1 canPack On\ group regulation\ longLabel Integrated Regulation from ENCODE\ priority 1\ shortLabel ENCODE Regulation\ superTrack on show\ track wgEncodeReg\ epdNewPromoter EPDnew v6 bigBed 8 Promoters from EPDnew human version 006 0 1 50 50 200 152 152 227 0 0 0 https://epd.epfl.ch/cgi-bin/get_doc?db=hgEpdNew&format=genome&entry=$$

Description

\ \

\ These tracks represent the experimentally validated promoters generated by \ the Eukaryotic Promoter Database.\

\ \

Display Conventions and Configuration

\ \

\ Each item in the track is a representation of the promoter sequence identified by EPD. The\ "thin" part of the element represents the 49 bp upstream of the annotated transcription\ start site (TSS) whereas the "thick" part represents the TSS plus 10 bp downstream. The\ relative position of the thick and thin parts define the orientation of the promoter.

\

\ Note that the EPD team has created a public track hub containing\ promoter and supporting annotations for human, mouse, and other vertebrate and model organism\ genomes.

\ \

Methods

\

\ Briefly, gene transcript coordinates were obtained from multiple sources (HGNC, GENCODE, Ensembl,\ RefSeq) and validated using data from CAGE and RAMPAGE experimental studies obtained from FANTOM 5,\ UCSC, and ENCODE. Peak calling, clustering and filtering based on relative expression were applied\ to identify the most expressed promoters and those present in the largest number of samples.

\

\ For the methodology and principles used by EPD to predict TSSs, refer to Dreos et al.\ (2013) in the References section below. A more detailed description of how this data was\ generated can be found at the following links:\ \

\

\ \

Credits

\ \

\ Data was generated by the EPD team at the \ Swiss Institute of Bioinformatics. \ For inquiries, contact the EPD team using this on-line form \ or email \ \ philipp.\ bucher@epfl.\ ch\ \ .\

\ \

References

\ \

\ Dreos R, Ambrosini G, Perier RC, Bucher P.\ \ EPD and EPDnew, high-quality promoter resources in the\ next-generation sequencing era. Nucleic Acids\ Res. 2013 Jan 1;41(D1):D157-64. PMID: 23193273.\

\ \ expression 1 bigDataUrl /gbdb/hg38/bbi/epdNewHuman006.hg38.bb\ color 50,50,200\ dataVersion EPDNew Human Version 006 (May 2018)\ longLabel Promoters from EPDnew human version 006\ parent epdNew on\ priority 1\ shortLabel EPDnew v6\ track epdNewPromoter\ url https://epd.epfl.ch/cgi-bin/get_doc?db=hgEpdNew&format=genome&entry=$$\ fixSeqLiftOverPsl Fix Patches psl Reference Assembly Fix Patch Sequence Alignments 3 1 231 203 21 243 229 138 0 0 0

Description

\ \

\ This track shows alignments of fix patch sequences to\ main chromosome sequences in the reference genome assembly.\ When errors are corrected in the reference genome assembly, the\ Genome Reference Consortium\ (GRC) adds fix patch sequences containing the corrected regions.\ This strikes a balance between providing the most complete and correct genome\ sequence, while maintaining stable chromosome coordinates for the original assembly\ sequences.\

\

\ Fix patches are often associated with incident reports displayed in the GRC Incidents\ track.\

\ \

Display Conventions and Configuration

\ \

\ This track follows the display conventions for\ \ PSL alignment tracks.\ Mismatching bases are highlighted in red.\ Several types of alignment gap may also be colored;\ for more information, see\ \ Alignment Insertion/Deletion Display Options.\

\ \

Credits

\

\ The alignments were provided by NCBI as GFF files and translated into the PSL\ representation for browser display by UCSC.\

\ map 1 baseColorDefault diffBases\ baseColorUseSequence db\ color 231,203,21\ darkerLabels on\ group map\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Reference Assembly Fix Patch Sequence Alignments\ pennantIcon p14 black https://genome-blog.gi.ucsc.edu/blog/patches/ "Includes annotations on GRCh38.p14 patch sequences"\ priority 1\ shortLabel Fix Patches\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ track fixSeqLiftOverPsl\ type psl\ visibility pack\ knownGene GENCODE V46 bigGenePred knownGenePep knownGeneMrna GENCODE V46 3 1 0 0 0 127 127 127 0 0 0

Description

\

\ The GENCODE Genes track (version 46, May 2024) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ By default, only the basic gene set is\ displayed, which is a subset of the comprehensive gene set. The basic set represents transcripts\ that GENCODE believes will be useful to the majority of users.

\ \

\ The track includes protein-coding genes, non-coding RNA genes, and pseudo-genes, though pseudo-genes\ are not displayed by default. It contains annotations on the reference chromosomes as well as\ assembly patches and alternative loci (haplotypes).

\ \

\ The v46 release was derived from the GTF file that contains annotations only on the main\ chromosomes. Statistics for this build and information on how they were generated can be found on\ the GENCODE site.

\ \

\ For more information on the different gene tracks, see our Genes FAQ.

\ \

Display Conventions and Configuration

\

\ By default, this track displays only the basic GENCODE set, splice variants, and non-coding genes.\ It includes options to display the entire GENCODE set and pseudogenes. To customize these\ options, the respective boxes can be checked or unchecked at the top of this description page. \ \

\ This track also includes a variety of labels which identify the transcripts when visibility is set\ to "full" or "pack". Gene symbols (e.g. NIPA1) are displayed by default, but\ additional options include GENCODE Transcript ID (ENST00000561183.5), UCSC Known Gene ID\ (uc001yve.4), UniProt Display ID (Q7RTP0). Additional information about gene\ and transcript names can be found in our\ FAQ.

\ \

\ This track, in general, follows the display conventions for gene prediction tracks. The exons for\ putative non-coding genes and untranslated regions are represented by relatively thin blocks, while\ those for coding open reading frames are thicker. \

Coloring for the gene annotations is based on the annotation type:

\
    \
  • coding: protein coding transcripts, including polymorphic\ pseudogenes\
  • non-coding: non-protein coding transcripts\
  • pseudogene: pseudogene transcript annotations\
  • problem: problem transcripts (Biotypes of\ retained_intron, TEC, or disrupted_domain)
    • \
\ \

\ This track contains an optional codon coloring feature that allows users to\ quickly validate and compare gene predictions. There is also an option to display the data as\ a density graph, which\ can be helpful for visualizing the distribution of items over a region.

\ \ \

Squishy-pack Display

\

\ Within a gene using the pack display mode, transcripts below a specified rank will be\ condensed into a view similar to squish mode. The transcript ranking approach is\ preliminary and will change in future releases. The transcripts rankings are defined by the\ following criteria for protein-coding and non-coding genes:

\ Protein_coding genes\
    \
  1. MANE or Ensembl canonical\
      \
    • 1st: MANE Select / Ensembl canonical
      • \
    • 2nd: MANE Plus Clinical
      • \
    \
    2. \
  2. Coding biotypes\
      \
    • 1st: protein_coding and protein_coding_LoF
      • \
    • 2nd: NMDs and NSDs
      • \
    • 3rd: retained intron and protein_coding_CDS_not_defined
      • \
    \
    3. \
  3. Completeness\
      \
    • 1st: full length
      • \
    • 2nd: CDS start/end not found
      • \
    \
    4. \
  4. CARS score (only for coding transcripts)
    5. \
  5. Transcript genomic span and length (only for non-coding transcripts)
    6. \
\ Non-coding genes\
    \
  1. Transcript biotype\
      \
    • 1st: transcript biotype identical to gene biotype
      • \
    \
    2. \
  2. Ensembl canonical
    3. \
  3. GENCODE basic
    4. \
  4. Transcript genomic span
    5. \
  5. Transcript length
    6. \
\ \ \

Methods

\

\ The GENCODE v46 track was built from the GENCODE downloads file \ gencode.v46.chr_patch_hapl_scaff.annotation.gff3.gz. Data from other sources\ were correlated with the GENCODE data to build association tables.

\ \

Related Data

\

\ The GENCODE Genes transcripts are annotated in numerous tables, each of which is also available as a\ downloadable\ file.\ \

\ One can see a full list of the associated tables in the Table Browser by selecting GENCODE Genes from the track menu; this list\ is then available on the table menu.\ \ \

Data access

\

\ GENCODE Genes and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator. \ The genePred format files for hg38 are available from our \ \ downloads directory or in our\ \ GTF download directory. \ All the tables can also be queried directly from our public MySQL\ servers, with more information available on our\ help page as well as on\ our blog.

\ \

Credits

\

\ The GENCODE Genes track was produced at UCSC from the GENCODE comprehensive gene set using a\ computational pipeline developed by Jim Kent and Brian Raney. This version of the track was\ generated by Jonathan Casper.

\ \

References

\ \

\ Frankish A, Carbonell-Sala S, Diekhans M, Jungreis I, Loveland JE, Mudge JM, Sisu C, Wright JC,\ Arnan C, Barnes I et al.\ \ GENCODE: reference annotation for the human and mouse genomes in 2023.\ Nucleic Acids Res. 2023 Jan 6;51(D1):D942-D949.\ PMID: 36420896; PMC: PMC9825462\

\ \

A full list of GENCODE publications is available\ at The GENCODE\ Project web site.\

\ \

Data Release Policy

\

GENCODE data are available for use without restrictions.

\ genes 1 baseColorDefault genomicCodons\ bigDataUrl /gbdb/hg38/gencode/gencodeV46.bb\ defaultLabelFields geneName\ defaultLinkedTables kgXref\ directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s\ downloadUrl.1 "GFF Format" https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/genes/hg38.knownGene.gtf.gz\ group genes\ html knownGeneV46\ idXref kgAlias kgID alias\ intronGap 12\ isGencode3 on\ itemRgb on\ labelFields geneName,name,geneName2,name2\ longLabel GENCODE V46\ maxItems 50000\ pennantIcon Updated red ../goldenPath/newsarch.html#052224 "Updated May. 22, 2024"\ priority 1\ searchIndex name\ shortLabel GENCODE V46\ squishyPackField rank\ squishyPackLabel Number of transcripts shown at full height (ranked by GENCODE transcript ranking)\ squishyPackPoint 1\ table knownGene\ track knownGene\ type bigGenePred knownGenePep knownGeneMrna\ visibility pack\ pliByGene Gene LoF bigBed 12 + gnomAD Predicted Loss of Function Constraint Metrics By Gene (pLI) v2.1.1 3 1 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/gene/$$?dataset=gnomad_r2_1 varRep 1 bigDataUrl /gbdb/hg38/gnomAD/pLI/pliByGene.bb\ defaultLabelFields geneName\ filter._pli 0:1\ filterByRange._pli on\ filterLabel._pli Show only items between this pLI range\ itemRgb on\ labelFields name,geneName\ longLabel gnomAD Predicted Loss of Function Constraint Metrics By Gene (pLI) v2.1.1\ mouseOverField _mouseOver\ parent constraintV2 on\ priority 1\ searchIndex name,geneName\ shortLabel Gene LoF\ subGroups view=v2\ track pliByGene\ type bigBed 12 +\ url https://gnomad.broadinstitute.org/gene/$$?dataset=gnomad_r2_1\ urlLabel View this Gene on the gnomAD browser\ geneHancerRegElementsDoubleElite GH Reg Elems (DE) bigBed 9 + Enhancers and promoters from GeneHancer (Double Elite) 1 1 0 0 0 127 127 127 0 0 0 http://www.genecards.org/Search/Keyword?queryString=$$ regulation 1 bigDataUrl /gbdb/hg38/geneHancer/geneHancerRegElementsDoubleElite.hg38.bb\ longLabel Enhancers and promoters from GeneHancer (Double Elite)\ parent ghGeneHancer on\ shortLabel GH Reg Elems (DE)\ subGroups set=a_ELITE view=a_GH\ track geneHancerRegElementsDoubleElite\ wgEncodeBroadHistoneGm12878H3k4me1StdSig GM12878 bigWig 0 5199 H3K4Me1 Mark (Often Found Near Regulatory Elements) on GM12878 Cells from ENCODE 0 1 255 128 128 255 191 191 0 0 0 regulation 1 color 255,128,128\ longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on GM12878 Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k4me1\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel GM12878\ track wgEncodeBroadHistoneGm12878H3k4me1StdSig\ type bigWig 0 5199\ wgEncodeBroadHistoneGm12878H3k4me3StdSig GM12878 bigWig 0 5199 H3K4Me3 Mark (Often Found Near Regulatory Elements) on GM12878 Cells from ENCODE 0 1 255 128 128 255 191 191 0 0 0 regulation 1 color 255,128,128\ longLabel H3K4Me3 Mark (Often Found Near Regulatory Elements) on GM12878 Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k4me3\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel GM12878\ track wgEncodeBroadHistoneGm12878H3k4me3StdSig\ type bigWig 0 5199\ wgEncodeRegTxnCaltechRnaSeqGm12878R2x75Il200SigPooled GM12878 bigWig 0 65535 Transcription of GM12878 cells from ENCODE 0 1 255 128 128 255 191 191 0 0 0 regulation 1 color 255,128,128\ longLabel Transcription of GM12878 cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegTxn\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 1\ shortLabel GM12878\ track wgEncodeRegTxnCaltechRnaSeqGm12878R2x75Il200SigPooled\ type bigWig 0 65535\ wgEncodeRegMarkH3k27acGm12878 GM12878 bigWig 0 223899 H3K27Ac Mark (Often Found Near Regulatory Elements) on GM12878 Cells from ENCODE 2 1 255 128 128 255 191 191 0 0 0 regulation 1 color 255,128,128\ longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on GM12878 Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k27ac\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel GM12878\ table wgEncodeBroadHistoneGm12878H3k27acStdSig\ track wgEncodeRegMarkH3k27acGm12878\ type bigWig 0 223899\ gnomadGenomesVariantsV2 gnomAD Genome v2 vcfTabix Genome Aggregation Database (gnomAD) Genome Variants v2.1 0 1 0 0 0 127 127 127 0 0 0 varRep 1 bigDataUrl /gbdb/hg38/gnomAD/vcf/gnomad.genomes.r2.1.1.sites.liftover_grch38.vcf.gz\ longLabel Genome Aggregation Database (gnomAD) Genome Variants v2.1\ parent gnomadVariantsV2 on\ priority 1\ shortLabel gnomAD Genome v2\ track gnomadGenomesVariantsV2\ gnomadVariantsV4 gnomAD v4 Pre-Release vcfTabix Genome Aggregation Database (gnomAD) Genome Variants v4.0.0 Pre-Release 1 1 0 0 0 127 127 127 0 0 0 http://gnomad.broadinstitute.org/variant/$s-$-$-$?dataset=gnomad_r4&ignore=$$

Description

\

\ The gnomAD v4 track shows variants from 807,162 individuals, including 730,947 exomes and 76,215 genomes. This release includes the 76,156 genomes from the gnomAD v3.1.2 release as well as new exome data from 416,555 UK Biobank individuals. For more detailed information on gnomAD v4, see the related blog post. For now, the track is just the raw VCFs as provided by gnomAD, although a version of the track similar to v3.1.1 may be created in the future.

\

\ The gnomAD v3.1 track shows variants from 76,156 whole genomes (and no exomes), all mapped to the\ GRCh38/hg38 reference sequence. 4,454 genomes were added to the number of genomes in the previous\ v3 release. For more detailed information on gnomAD v3.1, see the related blog post.

\ \

\ The gnomAD v3.1.1 track contains the same underlying data as v3.1, but\ with minor corrections to the VEP annotations and dbSNP rsIDs. On the UCSC side, we have now\ included the mitochondrial chromosome data that was released as part of gnomAD v3.1 (but after\ the UCSC version of the track was released). For more information about gnomAD v3.1.1, please\ see the related\ changelog.

\ \

GnomAD Genome Mutational Constraint is based on v3.1.2 and is available only on hg38. \ It shows the reduced variation caused by purifying\ natural selection. This is similar to negative selection on loss-of-function\ (LoF) for genes, but can be calculated for non-coding regions too. \ Positive values are red and reflect stronger mutation constraint (and less variation), indicating \ higher natural selection pressure in a region. Negative values are green and \ reflect lower mutation constraint \ (and more variation), indicating less selection pressure and less functional effect.\ Briefly, for any 1kbp window in\ the genome, a model based on trinucleotide sequence context, base-level\ methylation, and regional genomic features predicts expected number of mutations,\ and compares this number to the observed number of mutations using a Z-score (see preprint\ in the Reference section for details). The chrX scores were added as received from the authors,\ as there are no de novo mutation data available on chrX (for estimating the effects of regional \ genomic features on mutation rates), they are more speculative than the ones on the autosomes.

\ \

\ The gnomAD Predicted Constraint Metrics track contains metrics of pathogenicity per-gene as \ predicted for gnomAD v2.1.1 and identifies genes subject to strong selection against various \ classes of mutation. This includes data on both the gene and transcript level.

\ \

\ The gnomAD v2 tracks show variants from 125,748 exomes and 15,708 whole genomes, all mapped to\ the GRCh37/hg19 reference sequence and lifted to the GRCh38/hg38 assembly. The data originate\ from 141,456 unrelated individuals sequenced as part of various population-genetic and\ disease-specific studies\ collected by the Genome Aggregation Database (gnomAD), release 2.1.1.\ Raw data from all studies have been reprocessed through a unified pipeline and jointly\ variant-called to increase consistency across projects. For more information on the processing\ pipeline and population annotations, see the following blog post\ and the 2.1.1 README.

\

\ gnomAD v2 data are based on the GRCh37/hg19 assembly. These tracks display the\ GRCh38/hg38 lift-over provided by gnomAD on their downloads site.\

\ \

On hg38 only, a subtrack "Gnomad mutational constraint" aka "Genome\ non-coding constraint of haploinsufficient variation (Gnocchi)" captures the\ depletion of variation caused by purifying natural selection.\ This is similar to negative selection on loss-of-function (LoF) for genes, but\ can be calculated for non-coding regions, too. Briefly, for any 1kbp window in\ the genome, a model based on trinucleotide sequence context, base-level\ methylation, and regional genomic features predicts expected number of mutations,\ and compares this number to the observed number of mutations using a Z-score (see Chen et al 2024 \ in the Reference section for details). The chrX scores were added as received from the authors, \ as there are no mutations available for chrX, they are more speculative than the ones on the autosomes.

\ \

\ For questions on the gnomAD data, also see the gnomAD FAQ.

\

\ More details on the Variant type(s) can be found on the Sequence Ontology page.

\ \

Display Conventions and Configuration

\

gnomAD v4

\

\ The gnomAD v4 track follows the standard display and configuration options available for\ VCF tracks, briefly explained below.\

\
    \
  • In mode, a vertical line is drawn at the position of\ each variant.
    • \
  • In mode, "ref" and "alt" alleles are\ displayed to the left of a vertical line with colored portions corresponding to allele counts.\ Hovering the mouse pointer over a variant pops up a display of alleles and counts.
    • \
\

gnomAD v3.1.1

\

\ The gnomAD v3.1.1 track version follows the same conventions and configuration as the v3.1 track,\ except as noted below.

\ \
    \
  1. There is a Non-cancer filter used to exclude/include variants from samples of individuals who\ were not ascertained for having cancer in a cancer study.\
  2. There are additional FILTER field filters: AS_VQSR, indel_stack (chrM only), and npg (chrM only).\
  3. Where possible, variants overlapping multiple transcripts/genes have been collapsed into one\ variant, with additional information available on the details page, which has roughly halved the\ number of items in the bigBed.\
  4. The bigBed has been split into two files, one with the information necessary for the track\ display, and one with the information necessary for the details page. For more information on\ this data format, please see the Data Access section below.\
  5. The VEP annotation is shown as a table instead of spread across multiple fields.\
  6. Intergenic variants have not been pre-filtered.\
\ \

gnomAD v3.1

\

\ By default, a maximum of 50,000 variants can be displayed at a time (before applying the filters\ described below), before the track switches to dense display mode.\

\ \

\ Mouse hover on an item will display many details about each variant, including the affected gene(s),\ the variant type, and annotation (missense, synonymous, etc).\

\ \

\ Clicking on an item will display additional details on the variant, including a population frequency\ table showing allele count in each sub-population.\

\ \

\ Following the conventions on the gnomAD browser, items are shaded according to their Annotation\ type:\ \ \ \ \ \
pLoF
Missense
Synonymous
Other
\

\ \

Label Options

\

\ To maintain consistency with the gnomAD website, variants are by default labeled according\ to their chromosomal start position followed by the reference and alternate alleles,\ for example "chr1-1234-T-CAG". dbSNP rsID's are also available as an additional\ label, if the variant is present in dbSnp.\

\ \

Filtering Options

\

\ Three filters are available for these tracks:\

\
    \
  • FILTER: Used to exclude/include variants that failed Random Forest\ (RF), Inbreeding Coefficient (Inbreeding Coeff), or Allele Count (AC0) filters. The\ PASS option is used to include/exclude variants that pass all of the RF,\ InbreedingCoeff, and AC0 filters, as denoted in the original VCF.\
  • Annotation type: Used to exclude/include variants that are annotated as\ Probability Loss of Function (pLoF), Missense, Synonymous, or Other, as\ annotated by VEP version 85 (GENCODE v19).\
  • Variant Type: Used to exclude/include variants according to the type of\ variation, as annotated by VEP v85.\
\ There is one additional configurable filter on the minimum minor allele frequency.\ \

gnomAD v2.1.1

\

\ The gnomAD v2.1.1 track follows the standard display and configuration options available for\ VCF tracks, briefly explained below.\

\
    \
  • In mode, a vertical line is drawn at the position of\ each variant.
    • \
  • In mode, "ref" and "alt" alleles are\ displayed to the left of a vertical line with colored portions corresponding to allele counts.\ Hovering the mouse pointer over a variant pops up a display of alleles and counts.
    • \
\ \

Filtering Options

\

\ Four filters are available for these tracks, the same as the underlying VCF:\

    \
  • AC0: Allele Count 0 after filtering out low confidence genotypes (GQ < 20; DP < 10; and AB < 0.2 for het calls))\
  • InbreedingCoeff: Inbreeding Coefficient < -0.3\
  • RF: Used to exclude/include variants that failed Random Forest filtering thresholds of 0.055272738028512555, 0.20641025579497013 (probabilities of being a true positive variant) for SNPs, indels)\
  • Pass: Variant passes all 3 filters\
\

\ \

\ There are two additional filters available, one for the minimum minor allele frequency, and a configurable filter on the QUAL score.\

\ \ \

UCSC Methods

\

\ The gnomAD v3.1.1 data is unfiltered.

\

\ For the v3.1 update only, in order to cut \ down on the amount of displayed data, the following variant\ types have been filtered out, but are still viewable in the gnomAD browser:\

    \
  • Regulatory Region Variants\
  • Downstream/Upstream Gene Variants\
  • Transcription Factor Binding Site Variants\
\

\ \

\ For the full steps used to create the track at UCSC, please see the section\ denoted "gnomAD v3.1 update" in the hg38 makedoc.\

\ \ \

Data Access

\ \

\ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that\ can be downloaded from our download server, subject\ to the conditions set forth by the gnomAD consortium (see below). Variant VCFs can be found in the\ vcf/ subdirectory. The\ v3.1 and\ v3.1.1 variants can\ be found in a special directory as they have been transformed from the underlying VCF.

\ \

\ For the v3.1.1 variants in particular, the underlying bigBed only contains enough information\ necessary to use the track in the browser. The extra data like VEP annotations and CADD scores are\ available in the same directory\ as the bigBed but in the files gnomad.v3.1.1.details.tab.gz and\ gnomad.v3.1.1.details.tab.gz.gzi. The gnomad.v3.1.1.details.tab.gz contains the gzip\ compressed extra data in JSON format, and the .gzi file is available to speed searching of\ this data. Each variant has an associated md5sum in the name field of the bigBed which can be\ used along with the _dataOffset and _dataLen fields to get the associated external data, as show\ below:\ 

\
# find item of interest:\
bigBedToBed genomes.bb stdout | head -4 | tail -1\
chr1    12416    12417    854246d79dc5d02dcdbd5f5438542b6e    [..omitted for brevity..]    chr1-12417-G-A    67293    902\
\
# use the final two fields, _dataOffset and _dataLen (add one to _dataLen to include a newline), to get the extra data:\
bgzip -b 67293 -s 903 gnomad.v3.1.1.details.tab.gz\
854246d79dc5d02dcdbd5f5438542b6e    {"DDX11L1": {"cons": ["non_coding_transcript_variant",  [..omitted for brevity..]\
\ \

\ The data can also be found directly from the gnomAD downloads page. Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.

\ \

The mutational constraints score was updated in October 2022 from a previous,\ now deprecated, pre-publication version. The old version can be found in our\ archive\ directory on the download server. It can be loaded by copying the URL into\ our "Custom tracks" input box.

\ \

Credits

\

\ Thanks to the Genome Aggregation\ Database Consortium for making these data available. The data are released under the Creative Commons Zero Public Domain Dedication as described here.\

\ \

\ Please note that some annotations within the provided files may have restrictions on usage. See here for more information. \

\ \

References

\ \

\ Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alfoldi J, Wang Q, Collins RL, Laricchia KM,\ Ganna A, Birnbaum DP et al.\ Variation across\ 141,456 human exomes and genomes reveals the spectrum of loss-of-function intolerance across human\ protein-coding genes. doi: https://doi.org/10.1101/531210.\

\

\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ Analysis of protein-coding\ genetic variation in 60,706 humans. Nature. 2016 Aug 17;536(7616):285-91.\ PMID: 27535533;\ PMC: PMC5018207\

\

\ Chen S, Francioli LC, Goodrich JK, Collins RL, Kanai M, Wang Q, Alföldi J, Watts NA, Vittal C,\ Gauthier LD et al.\ \ A genomic mutational constraint map using variation in 76,156 human genomes.\ Nature. 2024 Jan;625(7993):92-100.\ PMID: 38057664
\ (We added the data in 2021, then later referenced the 2022 Biorxiv preprint, in which the track was not called "Gnocchi" yet)\

\ varRep 1 compositeTrack on\ configureByPopup off\ dataVersion Release 4.0.0 (November 1, 2023, (chrY Fix November 16, 2023))\ html gnomadV4.html\ longLabel Genome Aggregation Database (gnomAD) Genome Variants v4.0.0 Pre-Release\ parent gnomadVariants\ priority 1\ shortLabel gnomAD v4 Pre-Release\ showHardyWeinberg on\ track gnomadVariantsV4\ type vcfTabix\ url http://gnomad.broadinstitute.org/variant/$s-$-$-$?dataset=gnomad_r4&ignore=$$\ urlLabel gnomAD:\ visibility dense\ gnomadExomesV4 gnomAD4 Exome Vars vcfTabix Genome Aggregation Database (gnomAD) Exomes Variants v4.0.0 Pre-Release 3 1 0 0 0 127 127 127 0 0 24 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX,chrY, http://gnomad.broadinstitute.org/variant/$s-$-$-$?dataset=gnomad_r4&ignore=$$ varRep 1 chromosomes chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX,chrY\ longLabel Genome Aggregation Database (gnomAD) Exomes Variants v4.0.0 Pre-Release\ maxWindowCoverage 1000\ maxWindowToDraw 10000\ parent gnomadVariantsV4\ shortLabel gnomAD4 Exome Vars\ track gnomadExomesV4\ visibility pack\ gtexEqtlCaviar GTEx CAVIAR eQTLs bigBed 12 + GTEx High-Confidence cis-eQTLs from CAVIAR (no chrX) 3 1 0 0 0 127 127 127 0 0 0 regulation 1 bigDataUrl /gbdb/hg38/gtex/eQtl/gtexCaviar.bb\ filter.cpp 0\ filterLabel.cpp CPP (Causal Posterior Probability)\ filterLabel.geneName Gene Symbol\ filterLabel.tissue Tissue\ filterText.geneName *\ filterValues.tissue Adipose_Subcutaneous,Adipose_Visceral_Omentum,Adrenal_Gland,Artery_Aorta,Artery_Coronary,Artery_Tibial,Brain_Amygdala,Brain_Anterior_cingulate_cortex_BA24,Brain_Caudate_basal_ganglia,Brain_Cerebellar_Hemisphere,Brain_Cerebellum,Brain_Cortex,Brain_Frontal_Cortex_BA9,Brain_Hippocampus,Brain_Hypothalamus,Brain_Nucleus_accumbens_basal_ganglia,Brain_Putamen_basal_ganglia,Brain_Spinal_cord_cervical_c-1,Brain_Substantia_nigra,Breast_Mammary_Tissue,Cells_Cultured_fibroblasts,Cells_EBV-transformed_lymphocytes,Colon_Sigmoid,Colon_Transverse,Esophagus_Gastroesophageal_Junction,Esophagus_Mucosa,Esophagus_Muscularis,Heart_Atrial_Appendage,Heart_Left_Ventricle,Kidney_Cortex,Liver,Lung,Minor_Salivary_Gland,Muscle_Skeletal,Nerve_Tibial,Ovary,Pancreas,Pituitary,Prostate,Skin_Not_Sun_Exposed_Suprapubic,Skin_Sun_Exposed_Lower_leg,Small_Intestine_Terminal_Ileum,Spleen,Stomach,Testis,Thyroid,Uterus,Vagina,Whole_Blood\ itemRgb on\ longLabel GTEx High-Confidence cis-eQTLs from CAVIAR (no chrX)\ maxItems 100000\ mergeSpannedItems on\ mouseOver $name; CPP: $cpp\ noParentConfig on\ parent gtexEqtlHighConf\ shortLabel GTEx CAVIAR eQTLs\ showCfg on\ track gtexEqtlCaviar\ type bigBed 12 +\ urls eqtlName="https://gtexportal.org/home/snp/$$" geneName="https://gtexportal.org/home/locusBrowserPage/$$" eqtlPos="hgTracks?db=$D&position=$$" genePos="hgTracks?db=$D&position=$$" geneId="https://www.ensembl.org/Homo_sapiens/Gene/Summary?g=$$"\ visibility pack\ gtexGeneV8 GTEx Gene V8 bed 6 + Gene Expression in 54 tissues from GTEx RNA-seq of 17382 samples, 948 donors (V8, Aug 2019) 3 1 0 0 0 127 127 127 1 0 0

Description

\

\ The\ \ NIH Genotype-Tissue Expression (GTEx) project\ was created to establish a sample and data resource for studies on the relationship between \ genetic variation and gene expression in multiple human tissues. \ This track shows median gene expression levels in 52 tissues and 2 cell lines, \ based on RNA-seq data from the GTEx final data release (V8, August 2019).\ This release is based on data from 17,382 tissue samples obtained from 948 adult \ post-mortem individuals.

\ \

Display Conventions

\

\ In Full and Pack display modes, expression for each gene is represented by a colored bargraph,\ where the height of each bar represents the median expression level across all samples for a \ tissue, and the bar color indicates the tissue.\ Tissue colors were assigned to conform to the GTEx Consortium publication conventions.\
     
\ The bargraph display has the same width and tissue order for all genes.\ Mouse hover over a bar will show the tissue and median expression level.\ The Squish display mode draws a rectangle for each gene, colored to indicate the tissue\ with highest expression level if it contributes more than 10% to the overall expression\ (and colored black if no tissue predominates).\ In Dense mode, the darkness of the grayscale rectangle displayed for the gene reflects the total\ median expression level across all tissues.

\

\ The GTEx transcript model used to quantify expression level is displayed below the graph,\ colored to indicate the transcript class \ (coding, \ noncoding, \ pseudogene, \ problem), \ following GENCODE conventions.\

\

\ Click-through on a graph displays a boxplot of expression level quartiles with outliers, \ per tissue, along with a link to the corresponding gene page on the GTEx Portal.

\ The track configuration page provides controls to limit the genes and tissues displayed,\ and to select raw or log transformed expression level display.

\ \

Methods

\ Tissue samples were obtained using the GTEx standard operating procedures for informed consent\ and tissue collection, in conjunction with the \ \ National Cancer Institute Biorepositories and Biospecimen.\ All tissue specimens were reviewed by pathologists to characterize and\ verify organ source.\ Images from stained tissue samples can be viewed via the \ \ NCI histopathology viewer.\ The Qiagen PAXgene non-formalin tissue preservation product was used to stabilize \ tissue specimens without cross-linking biomolecules.

\

\ RNA-seq was performed by the GTEx Laboratory, Data Analysis and Coordinating Center \ (LDACC) at the Broad Institute.\ The Illumina TruSeq protocol was used to create an unstranded polyA+ library sequenced\ on the Illumina HiSeq 2000 and HiSeq 2500 platforms to produce 76-bp paired end reads with a coverage\ goal of 50M (median achieved was ~82M total reads).\

\ Sequence reads were aligned to the hg38/GRCh38 human genome using STAR v2.5.3a\ assisted by the GENCODE 26 transcriptome definition. \ The alignment pipeline is available\ here.\

\

\ Gene annotations were produced using a custom isoform collapsing procedure that excluded\ retained intron and read through transcripts, merged overlapping exon intervals and then excluded\ exon intervals overlapping between genes.\ Gene expression levels in TPM were called via the RNA-SeQC tool (v1.1.9), after filtering for \ unique mapping, proper pairing, and exon overlap.\ For further method details, see the \ \ GTEx Portal Documentation page.

\

\ UCSC obtained the gene-level expression files, gene annotations and sample metadata from the \ GTEx Portal Download page.\ Median expression level in TPM was computed per gene/per tissue.

\ \

Subject and Sample Characteristics

\

\ The scientific goal of the GTEx project required that the donors and their biospecimen \ present with no evidence of disease. \ The tissue types collected were chosen based on their clinical significance, logistical \ feasibility and their relevance to the scientific goal of the project and the \ research community. \ Summary plots of GTEx sample characteristics are available at the \ \ GTEx Portal Tissue Summary page.

\ \ \

Data Access

\

\ The raw data for the GTEx Gene expression track can be accessed interactively through the \ \ Table Browser or Data Integrator. Metadata can be \ found in the connected tables below.\

    \
  • \ gtexGeneModelV8 describes the gene names and coordinates in genePred format.
    • \
  • \ hgFixed.gtexTissueV8 lists each of the 53 tissues in alphabetical order,\ corresponding to the comma separated expression values in gtexGeneV8.
    • \
  • \ hgFixed.gtexSampleDataV8 has TPM expression scores for each individual gene-sample \ data point, connected to gtexSampleV8.
    • \
  • \ hgFixed.gtexSampleV8 contains metadata about sample time, collection site,\ and tissue, connected to the donor field in the gtexDonorV8 table.
    • \
  • \ hgFixed.gtexDonorV8 has anonymized information on the tissue donor.

\

\ For automated analysis and downloads, the track data files can be downloaded from \ our downloads server\ or the JSON API.\ Individual regions or the whole genome annotation can be accessed as text using our utility\ bigBedToBed. Instructions for downloading the utility can be found \ here. \ That utility can also be used to obtain features within a given range, e.g. \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/gtex/gtexGeneV8.bb -chrom=chr21\ -start=0 -end=100000000 stdout

\

\ Data can also be obtained directly from GTEx at the following link:\ \ https://gtexportal.org/home/datasets

\ \

Credits

\

\ Statistical analysis and data interpretation was performed by The GTEx Consortium Analysis \ Working Group. \ Data was provided by the GTEx LDACC at The Broad Institute of MIT and Harvard.

\ \

References

\

\ GTEx Consortium. \ \ The GTEx Consortium atlas of genetic regulatory effects across human tissues.\ Science. 2020 Sep 11;369(6509):1318-1330.\ PMID: 32913098; \ PMC: PMC7737656

\

\ \

\ GTEx Consortium.\ \ The Genotype-Tissue Expression (GTEx) project.\ Nat Genet. 2013 Jun;45(6):580-5.\ PMID: 23715323; \ PMC: PMC4010069

\ \

\ Carithers LJ, Ardlie K, Barcus M, Branton PA, Britton A, Buia SA, Compton CC, DeLuca DS, \ Peter-Demchok J, Gelfand ET et al.\ \ A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project.\ Biopreserv Biobank. 2015 Oct;13(5):311-9.\ PMID: 26484571; \ PMC: PMC4675181

\ \ Melé M, Ferreira PG, Reverter F, DeLuca DS, Monlong J, Sammeth M, Young TR, Goldmann JM,\ Pervouchine DD, Sullivan TJ et al.\ \ Human genomics. The human transcriptome across tissues and individuals.\ Science. 2015 May 8;348(6235):660-5.\ PMID: 25954002; PMC: PMC4547472

\ \

\ DeLuca DS, Levin JZ, Sivachenko A, Fennell T, Nazaire MD, Williams C, Reich M, Winckler W, Getz G.\ \ RNA-SeQC: RNA-seq metrics for quality control and process optimization.\ Bioinformatics. 2012 Jun 1;28(11):1530-2.\ PMID: 22539670; PMC: PMC3356847

\ \ expression 1 group expression\ longLabel Gene Expression in 54 tissues from GTEx RNA-seq of 17382 samples, 948 donors (V8, Aug 2019)\ maxItems 200\ priority 1\ shortLabel GTEx Gene V8\ spectrum on\ track gtexGeneV8\ type bed 6 +\ visibility pack\ h1hescInsitu H1-hESC In situ hic In situ Hi-C Chromatin Structure on H1-hESC 0 1 0 0 0 127 127 127 0 0 0 regulation 1 bigDataUrl /gbdb/hg38/bbi/hic/4DNFIQYQWPF5.hic\ longLabel In situ Hi-C Chromatin Structure on H1-hESC\ parent hicAndMicroC off\ shortLabel H1-hESC In situ\ track h1hescInsitu\ type hic\ chainHprcGCA_018466845v1 HG02257.mat chain GCA_018466845.1 HG02257.mat HG02257.pri.mat.f1_v2 (May 2021 GCA_018466845.1_HG02257.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 1 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02257.mat HG02257.pri.mat.f1_v2 (May 2021 GCA_018466845.1_HG02257.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018466845.1\ parent hprcChainNetViewchain off\ priority 18\ shortLabel HG02257.mat\ subGroups view=chain sample=s018 population=afr subpop=acb hap=mat\ track chainHprcGCA_018466845v1\ type chain GCA_018466845.1\ platinumHybrid hybrid vcfTabix Platinum genome hybrid 3 1 0 0 0 127 127 127 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 1 bigDataUrl /gbdb/hg38/platinumGenomes/hg38.hybrid.vcf.gz\ chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX\ configureByPopup off\ group varRep\ longLabel Platinum genome hybrid\ maxWindowToDraw 200000\ parent platinumGenomes\ shortLabel hybrid\ showHardyWeinberg on\ track platinumHybrid\ type vcfTabix\ vcfDoFilter off\ vcfDoMaf off\ visibility pack\ xGen_Research_Probes_V1 IDT xGen V1 P bigBed IDT - xGen Exome Research Panel V1 Probes 0 1 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/xgen-exome-research-panel-probes-hg38.bb\ color 100,143,255\ longLabel IDT - xGen Exome Research Panel V1 Probes\ parent exomeProbesets off\ shortLabel IDT xGen V1 P\ track xGen_Research_Probes_V1\ type bigBed\ jarvis JARVIS bigWig JARVIS: score to prioritize non-coding regions for disease relevance 1 1 150 130 160 202 192 207 0 0 0

Description

\ \

\ The "Constraint scores" container track includes several subtracks showing the results of\ constraint prediction algorithms. These try to find regions of negative\ selection, where variations likely have functional impact. The algorithms do\ not use multi-species alignments to derive evolutionary constraint, but use\ primarily human variation, usually from variants collected by gnomAD (see the\ gnomAD V2 or V3 tracks on hg19 and hg38) or TOPMED (contained in our dbSNP\ tracks and available as a filter). One of the subtracks is based on UK Biobank\ variants, which are not available publicly, so we have no track with the raw data.\ The number of human genomes that are used as the input for these scores are\ 76k, 53k and 110k for gnomAD, TOPMED and UK Biobank, respectively.\

\ \

Note that another important constraint score, gnomAD\ constraint, is not part of this container track but can be found in the hg38 gnomAD\ track.\

\ \ The algorithms included in this track are:\
    \
  1. \ JARVIS - "Junk" Annotation genome-wide Residual Variation Intolerance Score: \ JARVIS scores were created by first scanning the entire genome with a\ sliding-window approach (using a 1-nucleotide step), recording the number of\ all TOPMED variants and common variants, irrespective of their predicted effect,\ within each window, to eventually calculate a single-nucleotide resolution\ genome-wide residual variation intolerance score (gwRVIS). That score, gwRVIS\ was then combined with primary genomic sequence context, and additional genomic\ annotations with a multi-module deep learning framework to infer\ pathogenicity of noncoding regions that still remains naive to existing\ phylogenetic conservation metrics. The higher the score, the more deleterious\ the prediction. This score covers the entire genome, except the gaps.\ \
  2. \ HMC - Homologous Missense Constraint:\ Homologous Missense Constraint (HMC) is a amino acid level measure\ of genetic intolerance of missense variants within human populations.\ For all assessable amino-acid positions in Pfam domains, the number of\ missense substitutions directly observed in gnomAD (Observed) was counted\ and compared to the expected value under a neutral evolution\ model (Expected). The upper limit of a 95% confidence interval for the\ Observed/Expected ratio is defined as the HMC score. Missense variants\ disrupting the amino-acid positions with HMC<0.8 are predicted to be\ likely deleterious. This score only covers PFAM domains within coding regions.\ \
  3. \ MetaDome - Tolerance Landscape Score (hg19 only):\ MetaDome Tolerance Landscape scores are computed as a missense over synonymous \ variant count ratio, which is calculated in a sliding window (with a size of 21 \ codons/residues) to provide \ a per-position indication of regional tolerance to missense variation. The \ variant database was gnomAD and the score corrected for codon composition. Scores \ <0.7 are considered intolerant. This score covers only coding regions.\ \
  4. \ MTR - Missense Tolerance Ratio (hg19 only):\ Missense Tolerance Ratio (MTR) scores aim to quantify the amount of purifying \ selection acting specifically on missense variants in a given window of \ protein-coding sequence. It is estimated across sliding windows of 31 codons \ (default) and uses observed standing variation data from the WES component of \ gnomAD / the Exome Aggregation Consortium Database (ExAC), version 2.0. Scores\ were computed using Ensembl v95 release. The number of gnomAD 2 exomes used here\ is higher than the number of gnomAD 3 samples (125 exoms versus 76k full genomes), \ but this score only covers coding regions.\ \
  5. \ UK Biobank depletion rank score (hg38 only):\ Halldorsson et al. tabulated the number of UK Biobank variants in each\ 500bp window of the genome and compared this number to an expected number\ given the heptamer nucleotide composition of the window and the fraction of\ heptamers with a sequence variant across the genome and their mutational\ classes. A variant depletion score was computed for every overlapping set\ of 500-bp windows in the genome with a 50-bp step size. They then assigned\ a rank (depletion rank (DR)) from 0 (most depletion) to 100 (least\ depletion) for each 500-bp window. Since the windows are overlapping, we\ plot the value only in the central 50bp of the 500bp window, following\ advice from the author of the score,\ Hakon Jonsson, deCODE Genetics. He suggested that the value of the central\ window, rather than the worst possible score of all overlapping windows, is\ the most informative for a position. This score covers almost the entire genome,\ only very few regions were excluded, where the genome sequence had too many gap characters.
\ \

Display Conventions and Configuration

\ \

JARVIS

\

\ JARVIS scores are shown as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The scores were downloaded and converted to a single bigWig file.\ Move the mouse over the bars to display the exact values. A horizontal line is shown at the 0.733\ value which signifies the 90th percentile.

\ See hg19 makeDoc and\ hg38 makeDoc.

\

\ Interpretation: The authors offer a suggested guideline of > 0.9998 for identifying\ higher confidence calls and minimizing false positives. In addition to that strict threshold, the \ following two more relaxed cutoffs can be used to explore additional hits. Note that these\ thresholds are offered as guidelines and are not necessarily representative of pathogenicity.

\ \

\ \ \ \ \ \ \ \ \ \
PercentileJARVIS score threshold
99th0.9998
95th0.9826
90th0.7338
\

\ \

HMC

\

\ HMC scores are displayed as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The highly-constrained cutoff\ of 0.8 is indicated with a line.

\

\ Interpretation: \ A protein residue with HMC score <1 indicates that missense variants affecting\ the homologous residues are significantly under negative selection (P-value <\ 0.05) and likely to be deleterious. A more stringent score threshold of HMC<0.8\ is recommended to prioritize predicted disease-associated variants.\

\ \

MetaDome

\

\ MetaDome data can be found on two tracks, MetaDome and MetaDome All Data.\ The MetaDome track should be used by default for data exploration. In this track\ the raw data containing the MetaDome tolerance scores were converted into a signal ("wiggle")\ track. Since this data was computed on the proteome, there was a small amount of coordinate\ overlap, roughly 0.42%. In these regions the lowest possible score was chosen for display\ in the track to maintain sensitivity. For this reason, if a protein variant is being evaluated,\ the MetaDome All Data track can be used to validate the score. More information\ on this data can be found in the MetaDome FAQ.

\

\ Interpretation: The authors suggest the following guidelines for evaluating\ intolerance. By default, the MetaDome track displays a horizontal line at 0.7 which \ signifies the first intolerant bin. For more information see the MetaDome publication.

\ \

\ \ \ \ \ \ \ \ \ \
ClassificationMetaDome Tolerance Score
Highly intolerant≤ 0.175
Intolerant≤ 0.525
Slightly intolerant≤ 0.7
\

\ \

MTR

\

\ MTR data can be found on two tracks, MTR All data and MTR Scores. In the\ MTR Scores track the data has been converted into 4 separate signal tracks\ representing each base pair mutation, with the lowest possible score shown when\ multiple transcripts overlap at a position. Overlaps can happen since this score\ is derived from transcripts and multiple transcripts can overlap. \ A horizontal line is drawn on the 0.8 score line\ to roughly represent the 25th percentile, meaning the items below may be of particular\ interest. It is recommended that the data be explored using\ this version of the track, as it condenses the information substantially while\ retaining the magnitude of the data.

\ \

Any specific point mutations of interest can then be researched in the \ MTR All data track. This track contains all of the information from\ \ MTRV2 including more than 3 possible scores per base when transcripts overlap.\ A mouse-over on this track shows the ref and alt allele, as well as the MTR score\ and the MTR score percentile. Filters are available for MTR score, False Discovery Rate\ (FDR), MTR percentile, and variant consequence. By default, only items in the bottom\ 25 percentile are shown. Items in the track are colored according\ to their MTR percentile:

\
    \
  • Green items MTR percentiles over 75\
  • Black items MTR percentiles between 25 and 75\
  • Red items MTR percentiles below 25\
  • Blue items No MTR score\
\

\ Interpretation: Regions with low MTR scores were seen to be enriched with\ pathogenic variants. For example, ClinVar pathogenic variants were seen to\ have an average score of 0.77 whereas ClinVar benign variants had an average score\ of 0.92. Further validation using the FATHMM cancer-associated training dataset saw\ that scores less than 0.5 contained 8.6% of the pathogenic variants while only containing\ 0.9% of neutral variants. In summary, lower scores are more likely to represent\ pathogenic variants whereas higher scores could be pathogenic, but have a higher chance\ to be a false positive. For more information see the MTR-Viewer publication.

\ \

Methods

\ \

JARVIS

\

\ Scores were downloaded and converted to a single bigWig file. See the\ hg19 makeDoc and the\ hg38 makeDoc for more info.\

\ \

HMC

\

\ Scores were downloaded and converted to .bedGraph files with a custom Python \ script. The bedGraph files were then converted to bigWig files, as documented in our \ makeDoc hg19 build log.

\ \

MetaDome

\

\ The authors provided a bed file containing codon coordinates along with the scores. \ This file was parsed with a python script to create the two tracks. For the first track\ the scores were aggregated for each coordinate, then the lowest score chosen for any\ overlaps and the result written out to bedGraph format. The file was then converted\ to bigWig with the bedGraphToBigWig utility. For the second track the file\ was reorganized into a bed 4+3 and conveted to bigBed with the bedToBigBed\ utility.

\

\ See the hg19 makeDoc for details including the build script.

\

\ The raw MetaDome data can also be accessed via their Zenodo handle.

\ \

MTR

\

\ V2\ file was downloaded and columns were reshuffled as well as itemRgb added for the\ MTR All data track. For the MTR Scores track the file was parsed with a python\ script to pull out the highest possible MTR score for each of the 3 possible mutations\ at each base pair and 4 tracks built out of these values representing each mutation.

\

\ See the hg19 makeDoc entry on MTR for more info.

\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\

\ \

\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

\ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/hmc/hmc.bw stdout\
\

\ \

\ Please refer to our\ Data Access FAQ\ for more information.\

\ \ \

Credits

\ \

\ Thanks to Jean-Madeleine Desainteagathe (APHP Paris, France) for suggesting the JARVIS, MTR, HMC tracks. Thanks to Xialei Zhang for providing the HMC data file and to Dimitrios Vitsios and Slave Petrovski for helping clean up the hg38 JARVIS files for providing guidance on interpretation. Additional\ thanks to Laurens van de Wiel for providing the MetaDome data as well as guidance on the track development and interpretation. \

\ \

References

\ \

\ Vitsios D, Dhindsa RS, Middleton L, Gussow AB, Petrovski S.\ \ Prioritizing non-coding regions based on human genomic constraint and sequence context with deep\ learning.\ Nat Commun. 2021 Mar 8;12(1):1504.\ PMID: 33686085; PMC: PMC7940646\

\ \

\ Xiaolei Zhang, Pantazis I. Theotokis, Nicholas Li, the SHaRe Investigators, Caroline F. Wright, Kaitlin E. Samocha, Nicola Whiffin, James S. Ware\ \ Genetic constraint at single amino acid resolution improves missense variant prioritisation and gene discovery.\ Medrxiv 2022.02.16.22271023\

\ \

\ Wiel L, Baakman C, Gilissen D, Veltman JA, Vriend G, Gilissen C.\ \ MetaDome: Pathogenicity analysis of genetic variants through aggregation of homologous human protein\ domains.\ Hum Mutat. 2019 Aug;40(8):1030-1038.\ PMID: 31116477; PMC: PMC6772141\

\ \

\ Silk M, Petrovski S, Ascher DB.\ \ MTR-Viewer: identifying regions within genes under purifying selection.\ Nucleic Acids Res. 2019 Jul 2;47(W1):W121-W126.\ PMID: 31170280; PMC: PMC6602522\

\ \

\ Halldorsson BV, Eggertsson HP, Moore KHS, Hauswedell H, Eiriksson O, Ulfarsson MO, Palsson G,\ Hardarson MT, Oddsson A, Jensson BO et al.\ \ The sequences of 150,119 genomes in the UK Biobank.\ Nature. 2022 Jul;607(7920):732-740.\ PMID: 35859178; PMC: PMC9329122\

\ \ phenDis 0 bigDataUrl /gbdb/hg38/jarvis/jarvis.bw\ color 150,130,160\ group phenDis\ html constraintSuper\ longLabel JARVIS: score to prioritize non-coding regions for disease relevance\ maxHeightPixels 8:40:128\ maxWindowToDraw 10000000\ mouseOverFunction noAverage\ parent constraintSuper\ priority 1\ shortLabel JARVIS\ track jarvis\ type bigWig\ viewLimits 0.0:1.0\ visibility dense\ yLineMark 0.73\ yLineOnOff on\ jaspar2024 JASPAR 2024 TFBS bigBed 6 + JASPAR CORE 2024 - Predicted Transcription Factor Binding Sites 3 1 0 0 0 127 127 127 1 0 0 http://jaspar.genereg.net/search?q=$$&collection=all&tax_group=all&tax_id=all&type=all&class=all&family=all&version=all regulation 1 bigDataUrl /gbdb/hg38/jaspar/JASPAR2024.bb\ filter.score 400\ filterByRange.score 0:1000\ filterValues.TFName 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IC4,ZIC5,ZIM3,ZKSCAN1,ZKSCAN3,ZKSCAN5,ZNF135,ZNF136,ZNF140,ZNF143,ZNF148,ZNF157,ZNF16,ZNF175,ZNF184,ZNF189,ZNF211,ZNF213,ZNF214,ZNF24,ZNF257,ZNF263,ZNF274,ZNF281,ZNF282,ZNF317,ZNF320,ZNF324,ZNF331,ZNF341,ZNF343,ZNF35,ZNF354A,ZNF354C,ZNF382,ZNF384,ZNF410,ZNF416,ZNF417,ZNF418,Znf423,ZNF449,ZNF454,ZNF460,ZNF524,ZNF528,ZNF530,ZNF547,ZNF549,ZNF558,ZNF574,ZNF582,ZNF610,ZNF652,ZNF667,ZNF669,ZNF675,ZNF677,ZNF680,ZNF682,ZNF684,ZNF692,ZNF701,ZNF707,ZNF708,ZNF740,ZNF75A,ZNF75D,ZNF76,ZNF766,ZNF768,ZNF770,ZNF784,ZNF8,ZNF816,ZNF85,ZNF93,ZSCAN16,ZSCAN21,ZSCAN29,ZSCAN31,ZSCAN4\ labelFields TFName\ longLabel JASPAR CORE 2024 - Predicted Transcription Factor Binding Sites\ maxItems 100000\ motifPwmTable hgFixed.jasparCore2024\ parent jaspar on\ pennantIcon New red ../goldenPath/newsarch.html#030524 "New Mar. 5, 2024"\ priority 1\ shortLabel JASPAR 2024 TFBS\ track jaspar2024\ type bigBed 6 +\ visibility pack\ wgEncodeRegDnaseUwK562Peak K562 Pk narrowPeak K562 lymphoblast chronic myeloid leukemia cell line DNaseI Peaks from ENCODE 1 1 255 85 85 255 170 170 1 0 0 regulation 1 color 255,85,85\ longLabel K562 lymphoblast chronic myeloid leukemia cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak on\ shortLabel K562 Pk\ subGroups view=a_Peaks cellType=K562 treatment=n_a tissue=bone_marrow cancer=cancer\ track wgEncodeRegDnaseUwK562Peak\ wgEncodeRegDnaseUwK562Wig K562 Sg bigWig 0 38914.2 K562 lymphoblast chronic myeloid leukemia cell line DNaseI Signal from ENCODE 0 1 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel K562 lymphoblast chronic myeloid leukemia cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig on\ priority 1\ shortLabel K562 Sg\ subGroups cellType=K562 treatment=n_a tissue=bone_marrow cancer=cancer\ table wgEncodeRegDnaseUwK562Signal\ track wgEncodeRegDnaseUwK562Wig\ type bigWig 0 38914.2\ lovdShort LOVD Variants < 50 bp + ins bigBed 4 + Leiden Open Variation Database, short < 50 bp variants and insertions of any length 0 1 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg38/lovd/lovd.hg38.short.bb\ group phenDis\ longLabel Leiden Open Variation Database, short < 50 bp variants and insertions of any length\ noScoreFilter on\ parent lovdComp\ shortLabel LOVD Variants < 50 bp + ins\ track lovdShort\ urls id="https://varcache.lovd.nl/redirect/$$"\ visibility hide\ MaxCounts_Fwd Max counts of CAGE reads (fwd) bigWig Max counts of CAGE reads forward 2 1 255 0 0 255 127 127 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ctssMaxCounts.fwd.bw\ color 255,0,0\ dataVersion FANTOM5 reprocessed7\ longLabel Max counts of CAGE reads forward\ parent Max_counts_multiwig\ shortLabel Max counts of CAGE reads (fwd)\ subGroups category=max strand=forward\ track MaxCounts_Fwd\ type bigWig\ hprc90way Multiple Alignment wigMaf 0.0 1.0 Multiple Alignment on 90 human genome assemblies 3 1 0 10 100 0 90 10 0 0 0

Description

\

\ This track shows multiple alignments of 90 human genomes generated by the Minigraph-Cactus\ pangenome pipeline, which creates pangenomes directly from whole-genome alignments. This method\ builds graphs containing all forms of genetic variation while allowing use of current mapping and\ genotyping tools.\

\ \

Display Conventions and Configuration

\

\ In full and pack display modes, conservation scores are displayed as a\ wiggle track (histogram) in which the height reflects the\ size of the score.\ The conservation wiggles can be configured in a variety of ways to\ highlight different aspects of the displayed information.\ Click the Graph configuration help link for an explanation\ of the configuration options.

\

\ Pairwise alignments of each species to the human genome are\ displayed below the conservation histogram as a grayscale density plot (in\ pack mode) or as a wiggle (in full mode) that indicates alignment quality.\ In dense display mode, conservation is shown in grayscale using\ darker values to indicate higher levels of overall conservation\ as scored by phastCons.

\

\ Checkboxes on the track configuration page allow selection of the\ species to include in the pairwise display.\ Note that excluding species from the pairwise display does not alter the\ the conservation score display.

\

\ To view detailed information about the alignments at a specific\ position, zoom the display in to 30,000 or fewer bases, then click on\ the alignment.

\ \

Gap Annotation

\

\ The Display chains between alignments configuration option\ enables display of gaps between alignment blocks in the pairwise alignments in\ a manner similar to the Chain track display. The following\ conventions are used:\

    \
  • Single line: No bases in the aligned species. Possibly due to a\ lineage-specific insertion between the aligned blocks in the human genome\ or a lineage-specific deletion between the aligned blocks in the aligning\ species.\
  • Double line: Aligning species has one or more unalignable bases in\ the gap region. Possibly due to excessive evolutionary distance between\ species or independent indels in the region between the aligned blocks in both\ species.\
  • Pale yellow coloring: Aligning species has Ns in the gap region.\ Reflects uncertainty in the relationship between the DNA of both species, due\ to lack of sequence in relevant portions of the aligning species.\

\ \

Genomic Breaks

\

\ Discontinuities in the genomic context (chromosome, scaffold or region) of the\ aligned DNA in the aligning species are shown as follows:\

    \
  • \ Vertical blue bar: Represents a discontinuity that persists indefinitely\ on either side, e.g. a large region of DNA on either side of the bar\ comes from a different chromosome in the aligned species due to a large scale\ rearrangement.\
  • \ Green square brackets: Enclose shorter alignments consisting of DNA from\ one genomic context in the aligned species nested inside a larger chain of\ alignments from a different genomic context. The alignment within the\ brackets may represent a short misalignment, a lineage-specific insertion of a\ transposon in the human genome that aligns to a paralogous copy somewhere\ else in the aligned species, or other similar occurrence.\

\ \

Base Level

\

\ When zoomed-in to the base-level display, the track shows the base\ composition of each alignment. The numbers and symbols on the Gaps\ line indicate the lengths of gaps in the human sequence at those\ alignment positions relative to the longest non-human sequence.\ If there is sufficient space in the display, the size of the gap is shown.\ If the space is insufficient and the gap size is a multiple of 3, a\ "*" is displayed; other gap sizes are indicated by "+".

\ \

Methods

\

\ The MAF was obtained from the HPRC v1.0 minigraph-cactus HAL file (renamed\ to replace all "." characters in sample names with "#" using\ halRenameGenomes) using cactus v2.6.4 as follows.\ 

\
cactus-hal2maf ./js ./hprc-v1.0-mc-grch38.h\
al hprc-v1.0-mc-grch38.maf.gz --noAncestors --refGenome GRCh38\
--filterGapCausingDupes --chunkSize 100000 --batchCores 96 --batchCount 1\
0 --noAncestors --batchParallelTaf 32 --batchSystem slurm --logFile\
hprc-v1.0-mc-grch38.maf.gz.log\
\
zcat hprc-v1.0-mc-grch38.maf.gz | mafDuplicateFilter -m - -k | bgzip >\
hprc-v1.0-mc-grch38-single-copy.maf.gz
\

\ \

Credits

\

\ Thank you to Glenn Hickey for providing the HAL file from the HPRC project.\

\ \

References

\

\ Liao WW, Asri M, Ebler J, Doerr D, Haukness M, Hickey G, Lu S, Lucas JK, Monlong J, Abel HJ et\ al.\ \ A draft human pangenome reference.\ Nature. 2023 May;617(7960):312-324.\ DOI: 10.1038/s41586-023-05896-x; PMID: 37165242; PMC: PMC10172123\

\ \

\ Hickey G, Monlong J, Ebler J, Novak AM, Eizenga JM, Gao Y, Human Pangenome Reference Consortium,\ Marschall T, Li H, Paten B.\ \ Pangenome graph construction from genome alignments with Minigraph-Cactus.\ Nat Biotechnol. 2023 May 10;.\ DOI: 10.1038/s41587-023-01793-w; PMID: 37165083; PMC: PMC10638906\

\ \

\ Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q, Xie D, Feng S, Stiller J\ et al.\ \ Progressive Cactus is a multiple-genome aligner for the thousand-genome era.\ Nature. 2020 Nov;587(7833):246-251.\ DOI: 10.1038/s41586-020-2871-y; PMID: 33177663; PMC: PMC7673649\

\ \

\ Paten B, Earl D, Nguyen N, Diekhans M, Zerbino D, Haussler D.\ \ Cactus: Algorithms for genome multiple sequence alignment.\ Genome Res. 2011 Sep;21(9):1512-28.\ DOI: 10.1101/gr.123356.111;\ PMID: 21665927; PMC: PMC3166836\

\ hprc 1 altColor 0,90,10\ color 0, 10, 100\ irows on\ itemFirstCharCase noChange\ longLabel Multiple Alignment on 90 human genome assemblies\ mafDot on\ noInherit on\ parent consHprc90wayViewalign\ sGroup_Afr_Carib_Barabdos GCA_018466835.1 GCA_018466845.1 GCA_018466855.1 GCA_018466985.1 GCA_018467005.1 GCA_018467015.1 GCA_018467155.1 GCA_018467165.1 GCA_018505825.1 GCA_018505855.1 GCA_018505865.1 GCA_018506125.1 GCA_018852585.1 GCA_018852595.1\ sGroup_African_SW_USA GCA_018504625.1 GCA_018504635.1\ sGroup_Columbia_Medellin GCA_018469405.1 GCA_018469665.1 GCA_018469675.1 GCA_018469685.1 GCA_018469695.1 GCA_018469705.1 GCA_018469865.1 GCA_018469965.1\ sGroup_Esan_Nigeria GCA_018469415.1 GCA_018469425.1\ sGroup_Gambian GCA_018469875.1 GCA_018469925.1 GCA_018469935.1 GCA_018469945.1 GCA_018469955.1 GCA_018470425.1 GCA_018470435.1 GCA_018470445.1 GCA_018470455.1 GCA_018470465.1 GCA_018473295.1 GCA_018473315.1 GCA_018503575.1 GCA_018503585.1 GCA_018504065.1 GCA_018504075.1\ sGroup_HAPMAP GCA_018504655.1 GCA_018504665.1\ sGroup_Han_SoChina GCA_018471515.1 GCA_018472565.1 GCA_018472575.1 GCA_018472585.1 GCA_018472595.1 GCA_018472605.1\ sGroup_Mende_Sierra_Leone GCA_018472825.1 GCA_018472835.1 GCA_018472855.1 GCA_018473305.1 GCA_018503245.1 GCA_018503525.1 GCA_018506155.1 GCA_018506165.1\ sGroup_Peru_Lima GCA_018471525.1 GCA_018471535.1 GCA_018471545.1 GCA_018471555.1 GCA_018472695.1 GCA_018472705.1 GCA_018472845.1 GCA_018472865.1\ sGroup_Puerto_Rico GCA_018471065.1 GCA_018471075.1 GCA_018471085.1 GCA_018471095.1 GCA_018471105.1 GCA_018471345.1 GCA_018472685.1 GCA_018472715.1 GCA_018472725.1 GCA_018472765.1 GCA_018504045.1 GCA_018504365.1 GCA_018504375.1 GCA_018504645.1 GCA_018506955.1 GCA_018506975.1\ sGroup_Punjabo_Pakis GCA_018505835.1 GCA_018505845.1\ sGroup_T2T hs1\ sGroup_Vietnam_Kinh GCA_018504055.1 GCA_018504085.1\ sGroup_Yoruba_Nigeria GCA_018503255.1 GCA_018503285.1\ shortLabel Multiple Alignment\ speciesCodonDefault hg38\ speciesGroups T2T HAPMAP Yoruba_Nigeria Esan_Nigeria Gambian Mende_Sierra_Leone Afr_Carib_Barabdos African_SW_USA Puerto_Rico Peru_Lima Columbia_Medellin Han_SoChina Vietnam_Kinh Punjabo_Pakis\ speciesLabels GCA_018466835.1="HG02257.pat" GCA_018466845.1="HG02257.mat" GCA_018466855.1="HG02559.pat" GCA_018466985.1="HG02559.mat" GCA_018467005.1="HG02486.pat" GCA_018467015.1="HG02486.mat" GCA_018467155.1="HG01891.mat" GCA_018467165.1="HG01891.pat" GCA_018469405.1="HG01258.mat" GCA_018469415.1="HG03516.pat" GCA_018469425.1="HG03516.mat" GCA_018469665.1="HG01123.mat" GCA_018469675.1="HG01258.pat" GCA_018469685.1="HG01361.mat" GCA_018469695.1="HG01123.pat" GCA_018469705.1="HG01361.pat" GCA_018469865.1="HG01358.mat" GCA_018469875.1="HG02622.mat" GCA_018469925.1="HG02622.pat" GCA_018469935.1="HG02717.mat" GCA_018469945.1="HG02630.pat" GCA_018469955.1="HG02630.mat" GCA_018469965.1="HG01358.pat" GCA_018470425.1="HG02717.pat" GCA_018470435.1="HG02572.pat" GCA_018470445.1="HG02572.mat" GCA_018470455.1="HG02886.mat" GCA_018470465.1="HG02886.pat" GCA_018471065.1="HG01175.pat" GCA_018471075.1="HG01106.pat" GCA_018471085.1="HG01175.mat" GCA_018471095.1="HG00741.mat" GCA_018471105.1="HG00741.pat" GCA_018471345.1="HG01106.mat" GCA_018471515.1="HG00438.mat" GCA_018471525.1="HG02148.pat" GCA_018471535.1="HG02148.mat" GCA_018471545.1="HG01952.mat" GCA_018471555.1="HG01952.pat" GCA_018472565.1="HG00673.mat" GCA_018472575.1="HG00621.pat" GCA_018472585.1="HG00673.pat" GCA_018472595.1="HG00438.pat" GCA_018472605.1="HG00621.mat" GCA_018472685.1="HG01071.mat" GCA_018472695.1="HG01928.mat" GCA_018472705.1="HG01928.pat" GCA_018472715.1="HG00735.pat" GCA_018472725.1="HG01071.pat" GCA_018472765.1="HG00735.mat" GCA_018472825.1="HG03579.mat" GCA_018472835.1="HG03579.pat" GCA_018472845.1="HG01978.pat" GCA_018472855.1="HG03453.mat" GCA_018472865.1="HG01978.mat" GCA_018473295.1="HG03540.mat" GCA_018473305.1="HG03453.pat" GCA_018473315.1="HG03540.pat" GCA_018503245.1="HG03486.pat" GCA_018503255.1="NA18906.mat" GCA_018503285.1="NA18906.pat" GCA_018503525.1="HG03486.mat" GCA_018503575.1="HG02818.pat" GCA_018503585.1="HG02818.mat" GCA_018504045.1="HG01243.pat" GCA_018504055.1="HG02080.pat" GCA_018504065.1="HG02723.mat" GCA_018504075.1="HG02723.pat" GCA_018504085.1="HG02080.mat" GCA_018504365.1="HG01109.mat" GCA_018504375.1="HG01243.mat" GCA_018504625.1="NA20129.pat" GCA_018504635.1="NA20129.mat" GCA_018504645.1="HG01109.pat" GCA_018504655.1="NA21309.mat" GCA_018504665.1="NA21309.pat" GCA_018505825.1="HG02109.mat" GCA_018505835.1="HG03492.pat" GCA_018505845.1="HG03492.mat" GCA_018505855.1="HG02055.pat" GCA_018505865.1="HG02109.pat" GCA_018506125.1="HG02055.mat" GCA_018506155.1="HG03098.pat" GCA_018506165.1="HG03098.mat" GCA_018506955.1="HG00733.pat" GCA_018506975.1="HG00733.mat" GCA_018852585.1="HG02145.mat" GCA_018852595.1="HG02145.pat" hs1="T2T-CHM13v2.0"\ subGroups view=align\ summary hprc90waySummary\ track hprc90way\ treeImage phylo/hprc_90way.png\ type wigMaf 0.0 1.0\ viewUi on\ cons100wayViewalign Multiz Alignments bed 4 Vertebrate Multiz Alignment & Conservation (100 Species) 3 1 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Vertebrate Multiz Alignment & Conservation (100 Species)\ parent cons100way\ shortLabel Multiz Alignments\ track cons100wayViewalign\ view align\ viewUi on\ visibility pack\ revelA Mutation: A bigWig REVEL: Mutation is A 1 1 150 80 200 202 167 227 0 0 0 phenDis 0 bigDataUrl /gbdb/hg38/revel/a.bw\ longLabel REVEL: Mutation is A\ maxHeightPixels 128:20:8\ maxWindowToDraw 10000000\ maxWindowToQuery 500000\ mouseOverFunction noAverage\ parent revel on\ shortLabel Mutation: A\ track revelA\ type bigWig\ viewLimits 0:1.0\ viewLimitsMax 0:1.0\ visibility dense\ caddA Mutation: A bigWig CADD 1.6 Score: Mutation is A 1 1 100 130 160 177 192 207 0 0 0 phenDis 0 bigDataUrl /gbdb/hg38/cadd/a.bw\ longLabel CADD 1.6 Score: Mutation is A\ maxHeightPixels 128:20:8\ parent cadd on\ shortLabel Mutation: A\ track caddA\ type bigWig\ viewLimits 10:50\ viewLimitsMax 0:100\ visibility dense\ omimAvSnp OMIM Alleles bed 4 OMIM Allelic Variant Phenotypes 1 1 0 80 0 127 167 127 0 0 0 http://www.omim.org/entry/

Description

\ \
\

NOTE:
\ OMIM is intended for use primarily by physicians and other\ professionals concerned with genetic disorders, by genetics researchers, and\ by advanced students in science and medicine. While the OMIM database is\ open to the public, users seeking information about a personal medical or\ genetic condition are urged to consult with a qualified physician for\ diagnosis and for answers to personal questions. Further, please be\ sure to click through to omim.org for the very latest, as they are continually \ updating data.

\ \

NOTE ABOUT DOWNLOADS:
\ OMIM is the property \ of Johns Hopkins University and is not available for download or mirroring \ by any third party without their permission. Please see \ OMIM\ for downloads.

\
\ \ \

OMIM is a compendium of human genes and genetic phenotypes. The full-text,\ referenced overviews in OMIM contain information on all known Mendelian\ disorders and over 12,000 genes. OMIM is authored and edited at the\ McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University\ School of Medicine, under the direction of Dr. Ada Hamosh. This database\ was initiated in the early 1960s by Dr. Victor A. McKusick as a catalog\ of Mendelian traits and disorders, entitled Mendelian Inheritance\ in Man (MIM).\

\ \

\ The OMIM data are separated into three separate tracks:\

\ \

OMIM Alellic Variant Phenotypes (OMIM Alleles)\
    Variants in the OMIM database that have associated \ dbSNP identifiers.\ \

OMIM Gene Phenotypes (OMIM Genes)\
    The genomic positions of gene entries in the OMIM \ database. The coloring indicates the associated OMIM phenotype map key.\

\ \

OMIM Cytogenetic Loci Phenotypes - Gene Unknown (OMIM Cyto Loci)\
    Regions known to be associated with a phenotype, \ but for which no specific gene is known to be causative. This track \ also includes known multi-gene syndromes.\

\ \
\ \ \

\ This track shows the allelic variants in the Online Mendelian Inheritance in Man\ (OMIM) database that have associated\ dbSNP identifiers.\

\ \

Display Conventions and Configuration

\ \

Genomic positions of OMIM allelic variants are marked by solid blocks, which appear\ as tick marks when zoomed out. \

The details page for each variant displays the allelic variant description, the amino\ acid replacement, and the associated\ dbSNP and/or\ ClinVar identifiers with links to the\ variant's details at those resources.\

\

The descriptions of OMIM entries are shown on the main browser display when Full display\ mode is chosen. In Pack mode, the descriptions are shown when mousing over each entry.\

\ \

Methods

\

\ This track was constructed as follows: \

    \
  • The OMIM allelic variant data file mimAV.txt was obtained from OMIM and\ loaded into the MySQL table omimAv.\
  • The genomic position for each allelic variant in omimAv with an associated\ dbSnp identifier was obtained from the snp151 table. The OMIM AV identifiers and\ their corresponding genomic positions from dbSNP were then loaded into the omimAvSnp\ table.\
\ \

Data Updates

\ This track is automatically updated once a week from OMIM data. The most recent update time is shown\ at the top of the track documentation page.\ \

Data Access

\

\ Because OMIM has only allowed Data queries within individual chromosomes, no download files are\ available from the Genome Browser. Full genome datasets can be downloaded directly from the\ OMIM Downloads page.\ All genome-wide downloads are freely available from OMIM after registration.

\

\ If you need the OMIM data in exactly the format of the UCSC Genome Browser,\ for example if you are running a UCSC Genome Browser local installation (a partial "mirror"),\ please create a user account on omim.org and contact OMIM via\ https://omim.org/contact. Send them your OMIM\ account name and request access to the UCSC Genome Browser 'entitlement'. They will\ then grant you access to a MySQL/MariaDB data dump that contains all UCSC\ Genome Browser OMIM tables.

\

\ UCSC offers queries within chromosomes from\ Table Browser that include a variety\ of filtering options and cross-referencing other datasets using our\ Data Integrator tool.\ UCSC also has an API\ that can be used to retrieve data in JSON format from a particular chromosome range.

\

\ Please refer to our searchable\ mailing list archives\ for more questions and example queries, or our\ Data Access FAQ\ for more information.

\ \

Credits

\

\ Thanks to OMIM and NCBI for the use of their data. This track was constructed by Fan Hsu,\ Robert Kuhn, and Brooke Rhead of the UCSC Genome Bioinformatics Group.

\ \

References

\

\ Amberger J, Bocchini CA, Scott AF, Hamosh A.\ McKusick's Online Mendelian Inheritance in Man (OMIM).\ Nucleic Acids Res. 2009 Jan;37(Database issue):D793-6.\ PMID: 18842627; PMC: PMC2686440\

\ \

\ Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA.\ \ Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic\ disorders.\ Nucleic Acids Res. 2005 Jan 1;33(Database issue):D514-7.\ PMID: 15608251; PMC: PMC539987\

\ phenDis 1 color 0, 80, 0\ group phenDis\ hgsid on\ longLabel OMIM Allelic Variant Phenotypes\ noGenomeReason Distribution restrictions by OMIM. See the track documentation for details. You can download the complete OMIM dataset for free from omim.org\ priority 1\ shortLabel OMIM Alleles\ tableBrowser noGenome omimAv omimAvRepl\ track omimAvSnp\ type bed 4\ url http://www.omim.org/entry/\ visibility dense\ panelAppCNVs PanelApp CNVs bigBed 9 + Genomics England PanelApp CNV Regions 3 1 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg38/panelApp/cnv.bb\ filterValues.confidenceLevel 3,2,1,0\ itemRgb on\ labelFields entityName\ longLabel Genomics England PanelApp CNV Regions\ parent panelApp on\ shortLabel PanelApp CNVs\ skipEmptyFields on\ skipFields chrom,chromStart,blockStarts,blockSizes\ track panelAppCNVs\ type bigBed 9 +\ urls omimGene="https://www.omim.org/entry/$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" entityName="https://panelapp.genomicsengland.co.uk/panels/entities/$$"\ visibility pack\ pHaplo pHaploinsufficiency bigBed 9 + 2 Probability of haploinsufficiency 3 1 0 0 0 127 127 127 0 0 0 https://www.deciphergenomics.org/search?q=$$ phenDis 1 bigDataUrl /gbdb/hg38/bbi/dosageSensitivityCollins2022/pHaploDosageSensitivity.bb\ filter.pHaplo 0\ filterByRange.pHaplo on\ filterLimits.pHaplo 0:1\ itemRgb on\ longLabel Probability of haploinsufficiency\ mouseOver $name, $ensGene, pHaplo:$pHaplo\ parent dosageSensitivity on\ shortLabel pHaploinsufficiency\ showCfg on\ track pHaplo\ type bigBed 9 + 2\ url https://www.deciphergenomics.org/search?q=$$\ urlLabel Link to DECIPHER\ visibility pack\ recombAvg Recomb. deCODE Avg bigWig Recombination rate: deCODE Genetics, average from paternal and maternal (mat for chrX) 2 1 0 130 0 127 192 127 0 0 0

Description

\

\ The recombination rate track represents calculated rates of recombination based\ on the genetic maps from deCODE (Halldorsson et al., 2019) and 1000 Genomes\ (2013 Phase 3 release, lifted from hg19). The deCODE map is more recent, has a higher \ resolution and was natively created on hg38 and therefore recommended. \ For the Recomb. deCODE average track, the recombination rates for chrX represent the female rate.\

\ \

This track also includes a subtrack with all the\ individual deCODE recombination events and another subtrack with several thousand\ de-novo mutations found in the deCODE sequencing data. These two tracks are hidden by\ default and have to be switched on explicitly on the configuration page.\

\ \

Display Conventions and Configuration

\

\ This is a super track that contains different subtracks, three with the deCODE\ recombination rates (paternal, maternal and average) and one with the 1000\ Genomes recombination rate (average). These tracks are in \ signal graph\ (wiggle) format. By default, to show most recombination hotspots, their maximum\ value is set to 100 cM, even though many regions have values higher than 100.\ The maximum value can be changed on the configuration pages of the tracks.\

\ \

\ There are two more tracks that show additional details provided by deCODE: one\ subtrack with the raw data of all cross-overs tagged with their proband ID and\ another one with around 8000 human de-novo mutation variants that are linked to\ cross-over changes.\

\ \

Methods

\

\ The deCODE genetic map was created at \ deCODE Genetics. It is based \ on microarrays assaying 626,828 SNP markers that allowed to identify 1,476,140 crossovers in\ 56,321 paternal meioses and 3,055,395 crossovers in 70,086 maternal meioses.\ In total, the data is based on 4,531,535 crossovers in 126,427 meioses. By\ using WGS data with 9,305,070 SNPs, the boundaries for 761,981 crossovers were\ refined: 247,942 crossovers in 9423 paternal meioses and 514,039 crossovers in\ 11,750 maternal meioses. The average resolution of the genetic map is 682 base\ pairs (bp): 655 and 708 bp for the paternal and maternal maps, respectively.\

\ \

The 1000 Genomes genetic map is based on the IMPUTE genetic map based on 1000 Genomes Phase 3, on hg19 coordinates. It\ was converted to hg38 by Po-Ru Loh at the Broad Institute. After a run of \ liftOver, he post-processed the data to deal with situations in which\ consecutive map locations became much closer/farther after lifting. The\ heuristic used is sufficient for statistical phasing but may not be optimal for\ other analyses. For this reason, and because of its higher resolution, the DeCODE\ map is therefore recommended for hg38.\

\ \

As with all other tracks, the data conversion commands and pointers to the\ original data files are documented in the \ makeDoc file of this track.

\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\

\ \

\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

\ bigWigToBedGraph -chrom=chr17 -start=45941345 -end=45942345 http://hgdownload.soe.ucsc.edu/gbdb/hg38/recombRate/recombAvg.bw stdout\
\

\ \

\ Please refer to our\ Data Access FAQ\ for more information.\

\ \

Credits

\

\ This track was produced at UCSC using data that are freely available for\ the deCODE\ and 1000 Genomes genetic maps. Thanks to Po-Ru Loh at the\ Broad Institute for providing the code to lift the hg19 1000 Genomes map data to hg38.\

\ \

References

\

\ 1000 Genomes Project Consortium., Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA,\ Hurles ME, McVean GA.\ \ A map of human genome variation from population-scale sequencing.\ Nature. 2010 Oct 28;467(7319):1061-73.\ PMID: 20981092; PMC: PMC3042601\

\ \

\ Halldorsson BV, Palsson G, Stefansson OA, Jonsson H, Hardarson MT, Eggertsson HP, Gunnarsson B,\ Oddsson A, Halldorsson GH, Zink F et al.\ \ Characterizing mutagenic effects of recombination through a sequence-level genetic map.\ Science. 2019 Jan 25;363(6425).\ PMID: 30679340\

\ map 0 bigDataUrl /gbdb/hg38/recombRate/recombAvg.bw\ html recombRate2.html\ longLabel Recombination rate: deCODE Genetics, average from paternal and maternal (mat for chrX)\ maxHeightPixels 128:60:8\ parent recombRate2\ priority 1\ shortLabel Recomb. deCODE Avg\ track recombAvg\ type bigWig\ viewLimits 0.0:100\ viewLimitsMax 0:150000\ visibility full\ ncbiRefSeq RefSeq All genePred NCBI RefSeq genes, curated and predicted (NM_*, XM_*, NR_*, XR_*, NP_*, YP_*) 1 1 12 12 120 133 133 187 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 12,12,120\ idXref ncbiRefSeqLink mrnaAcc name\ longLabel NCBI RefSeq genes, curated and predicted (NM_*, XM_*, NR_*, XR_*, NP_*, YP_*)\ parent refSeqComposite off\ priority 1\ shortLabel RefSeq All\ track ncbiRefSeq\ ReMapDensity ReMap density bigWig ReMap density 0 1 0 0 0 127 127 127 0 0 0

Description

\

\ This track represents the ReMap Atlas of regulatory regions, which consists of a\ large-scale integrative analysis of all Public ChIP-seq data for transcriptional\ regulators from GEO, ArrayExpress, and ENCODE. \

\ \

\ Below is a schematic diagram of the types of regulatory regions: \

    \
  • ReMap 2022 Atlas (all peaks for each analyzed data set)
    • \
  • ReMap 2022 Non-redundant peaks (merged similar target)
    • \
  • ReMap 2022 Cis Regulatory Modules
    • \
\

\ \ \ \

Display Conventions and Configuration

\
    \
  • \ Each transcription factor follows a specific RGB color.\
    • \
  • \ ChIP-seq peak summits are represented by vertical bars.\
    • \
  • \ Hsap: A data set is defined as a ChIP/Exo-seq experiment in a given\ GEO/ArrayExpress/ENCODE series (e.g. GSE41561), for a given TF (e.g. ESR1), in\ a particular biological condition (e.g. MCF-7).\
    Data sets are labeled with the concatenation of these three pieces of\ information (e.g. GSE41561.ESR1.MCF-7).\
    • \
  • \ Atha: The data set is defined as a ChIP-seq experiment in a given series\ (e.g. GSE94486), for a given target (e.g. ARR1), in a particular biological\ condition (i.e. ecotype, tissue type, experimental conditions; e.g.\ Col-0_seedling_3d-6BA-4h).\
    Data sets are labeled with the concatenation of these three pieces of\ information (e.g. GSE94486.ARR1.Col-0_seedling_3d-6BA-4h).\
    • \
\ \

Methods

\

\ This 4th release of ReMap (2022) presents the analysis of a total of 8,103 \ quality controlled ChIP-seq (n=7,895) and ChIP-exo (n=208) data sets from public\ sources (GEO, ArrayExpress, ENCODE). The ChIP-seq/exo data sets have been mapped\ to the GRCh38/hg38 human assembly. The data set is defined as a ChIP-seq \ experiment in a given series (e.g. GSE46237), for a given TF (e.g. NR2C2), in a\ particular biological condition (i.e. cell line, tissue type, disease state, or\ experimental conditions; e.g. HELA). Data sets were labeled by concatenating\ these three pieces of information, such as GSE46237.NR2C2.HELA. \ \

\

Those merged analyses cover a total of 1,211 DNA-binding proteins\ (transcriptional regulators) such as a variety of transcription factors (TFs),\ transcription co-activators (TCFs), and chromatin-remodeling factors (CRFs) for\ 182 million peaks. \

\ \ \ \

GEO & ArrayExpress

\

\ Public ChIP-seq data sets were extracted from Gene Expression Omnibus (GEO) and\ ArrayExpress (AE) databases. For GEO, the query\ \ '('chip seq' OR 'chipseq' OR\ 'chip sequencing') AND 'Genome binding/occupancy profiling by high throughput\ sequencing' AND 'homo sapiens'[organism] AND NOT 'ENCODE'[project]'\ \ was used to return a list of all potential data sets to analyze, which were then manually \ assessed for further analyses. Data sets involving polymerases (i.e. Pol2 and\ Pol3), and some mutated or fused TFs (e.g. KAP1 N/C terminal mutation, GSE27929)\ were excluded.\

\ \

ENCODE

\

\ Available ENCODE ChIP-seq data sets for transcriptional regulators from the\ ENCODE portal were processed with the\ standardized ReMap pipeline. The list of ENCODE data was retrieved as FASTQ files from the\ ENCODE portal\ using the following filters:\

    \
  • Assay: "ChIP-seq"
    • \
  • Organism: "Homo sapiens"
    • \
  • Target of assay: "transcription factor"
    • \
  • Available data: "fastq" on 2016 June 21st
    • \
\ Metadata information in JSON format and FASTQ files\ were retrieved using the Python requests module.\

\ \

ChIP-seq processing

\

\ Both Public and ENCODE data were processed similarly. Bowtie 2 (PMC3322381) (version 2.2.9) with options -end-to-end -sensitive was used to align all\ reads on the genome. Biological and technical\ replicates for each unique combination of GSE/TF/Cell type or Biological condition\ were used for peak calling. TFBS were identified using MACS2 peak-calling tool\ (PMC3120977) (version 2.1.1.2) in order to follow ENCODE ChIP-seq guidelines,\ with stringent thresholds (MACS2 default thresholds, p-value: 1e-5). An input data\ set was used when available.\

\ \ \

Quality assessment

\

\ To assess the quality of public data sets, a score was computed based on the\ cross-correlation and the FRiP (fraction of reads in peaks) metrics developed by\ the ENCODE Consortium (https://genome.ucsc.edu/ENCODE/qualityMetrics.html). Two\ thresholds were defined for each of the two cross-correlation ratios (NSC,\ normalized strand coefficient: 1.05 and 1.10; RSC, relative strand coefficient:\ 0.8 and 1.0). Detailed descriptions of the ENCODE quality coefficients can be\ found at https://genome.ucsc.edu/ENCODE/qualityMetrics.html. The\ phantompeak tools suite was used\ (https://code.google.com/p/phantompeakqualtools/) to compute\ RSC and NSC.\

\

\ Please refer to the ReMap 2022, 2020, and 2018 publications for more details\ (citation below).\

\ \ \ \

Data Access

\

\ ReMap Atlas of regulatory regions data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\ \

\ Individual BED files for specific TFs, cells/biotypes, or data sets can be\ found and downloaded on the ReMap website.\

\ \

References

\ \

\ Chèneby J, Gheorghe M, Artufel M, Mathelier A, Ballester B.\ \ ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-\ seq experiments.\ Nucleic Acids Res. 2018 Jan 4;46(D1):D267-D275.\ PMID: 29126285; PMC: PMC5753247\

\

\ Chèneby J, Ménétrier Z, Mestdagh M, Rosnet T, Douida A, Rhalloussi W, Bergon A, Lopez\ F, Ballester B.\ \ ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis\ DNA-binding sequencing experiments.\ Nucleic Acids Res. 2020 Jan 8;48(D1):D180-D188.\ PMID: 31665499; PMC: PMC7145625\

\

\ Griffon A, Barbier Q, Dalino J, van Helden J, Spicuglia S, Ballester B.\ \ Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory\ landscape.\ Nucleic Acids Res. 2015 Feb 27;43(4):e27.\ PMID: 25477382; PMC: PMC4344487\

\

\ Hammal F, de Langen P, Bergon A, Lopez F, Ballester B.\ \ ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an\ integrative analysis of DNA-binding sequencing experiments.\ Nucleic Acids Res. 2022 Jan 7;50(D1):D316-D325.\ PMID: 34751401; PMC: PMC8728178\

\ \ regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/reMap/reMapDensity2022.bw\ html ../reMap\ longLabel ReMap density\ parent ReMap on\ priority 1\ shortLabel ReMap density\ track ReMapDensity\ type bigWig\ visibility hide\ rmsk RepeatMasker rmsk Repeating Elements by RepeatMasker 1 1 0 0 0 127 127 127 1 0 0

Description

\ \

\ This track was created by using Arian Smit's\ RepeatMasker\ program, which screens DNA sequences\ for interspersed repeats and low complexity DNA sequences. The program\ outputs a detailed annotation of the repeats that are present in the\ query sequence (represented by this track), as well as a modified version\ of the query sequence in which all the annotated repeats have been masked\ (generally available on the\ Downloads page). RepeatMasker uses the\ Repbase Update library of repeats from the\ Genetic \ Information Research Institute (GIRI).\ Repbase Update is described in Jurka (2000) in the References section below.

\ \

This track and the masking information in our \ hg38 genome download FASTA files was created in 2010 with the original RepBase library from 2010-03-02 and RepeatMasker 3.0.1.\ Since April 2019, RepBase is under a commercial license, we cannot distribute\ it or update the track using the RepBase library without a license. Therefore, and for\ compatibility with past results, given how central the masking is for many other\ annotations, we decided to not update the repeatmasking of hg38. However, you can show the\ small differences between the RepeatMasker 3/RepBase from 2010 and RepeatMasker 4/DFAM\ from 2020 using the track "RepeatMasker Viz" in the same track group. It\ contains two subtracks, one with the old and one with the new data. Also, these\ tracks have many more visusalisation options than the original RepeatMasker\ track.\

\ \

However, the last track update time of this track at UCSC is not 2010, because we had to add\ repeatmasking annotations to the rarely used _alt and _fix "patch" sequences of\ the hg38 genome. The repeatmasking annotations of the main chromosomes were unaffected\ and have not changed since 2010.\ For more information on genome patches, see our blog post.\

\ \

Display Conventions and Configuration

\ \

\ In full display mode, this track displays up to ten different classes of repeats:\

    \
  • Short interspersed nuclear elements (SINE), which include ALUs
    • \
  • Long interspersed nuclear elements (LINE)
    • \
  • Long terminal repeat elements (LTR), which include retroposons
    • \
  • DNA repeat elements (DNA)
    • \
  • Simple repeats (micro-satellites)
    • \
  • Low complexity repeats
    • \
  • Satellite repeats
    • \
  • RNA repeats (including RNA, tRNA, rRNA, snRNA, scRNA, srpRNA)
    • \
  • Other repeats, which includes class RC (Rolling Circle)
    • \
  • Unknown
    • \
\

\ \

\ The level of color shading in the graphical display reflects the amount of\ base mismatch, base deletion, and base insertion associated with a repeat\ element. The higher the combined number of these, the lighter the shading.\

\ \

\ A "?" at the end of the "Family" or "Class" (for example, DNA?) signifies that\ the curator was unsure of the classification. At some point in the future,\ either the "?" will be removed or the classification will be changed.

\ \

Methods

\ \

\ Data are generated using the RepeatMasker -s flag. Additional flags\ may be used for certain organisms. Repeats are soft-masked. Alignments may\ extend through repeats, but are not permitted to initiate in them.\ See the FAQ for more information.\

\ \

Credits

\ \

\ Thanks to Arian Smit, Robert Hubley and GIRI for providing the tools and\ repeat libraries used to generate this track.\

\ \

References

\ \

\ Smit AFA, Hubley R, Green P. RepeatMasker Open-3.0.\ \ http://www.repeatmasker.org. 1996-2010.\

\ \

\ Repbase Update is described in:\

\ \

\ Jurka J.\ \ Repbase Update: a database and an electronic journal of repetitive elements.\ Trends Genet. 2000 Sep;16(9):418-420.\ PMID: 10973072\

\ \

\ For a discussion of repeats in mammalian genomes, see:\

\ \

\ Smit AF.\ \ Interspersed repeats and other mementos of transposable elements in mammalian genomes.\ Curr Opin Genet Dev. 1999 Dec;9(6):657-63.\ PMID: 10607616\

\ \

\ Smit AF.\ \ The origin of interspersed repeats in the human genome.\ Curr Opin Genet Dev. 1996 Dec;6(6):743-8.\ PMID: 8994846\

\ rep 0 canPack off\ group rep\ html rmsk\ longLabel Repeating Elements by RepeatMasker\ maxWindowToDraw 10000000\ priority 1\ shortLabel RepeatMasker\ spectrum on\ track rmsk\ type rmsk\ visibility dense\ miRnaAtlasSample1BarChart Sample 1 bigBarChart miRNA Tissue Atlas microRna Expression 2 1 0 0 0 127 127 127 0 0 0

Description

\

\ The Human miRNA Tissue Atlas is a\ catalog of tissue-specific microRNA (miRNA) expression across 62 tissues. This track contains\ quantile normalized miRNA expression data sampled from two individuals and mapped to\ miRBase v21 coordinates. The track contains two subtracks, one\ for each individual sampled.

\ \

\ The Tissue Specificity Index (TSI) is analogous to the "tau" value for mRNA expression,\ and is calculated as described in the\ \ associated publication. Values closer to 0 indicate miRNAs expressed in many or all tissues,\ while values closer to 1 indicate miRNAs expressed only in a specific tissue or tissues. To\ browse miRNAs by TSI value, please see the\ miRNA Tissue Atlas.

\ \

Display Conventions and Configuration

\

\ This track is formatted as a barChart track,\ similar to the GTEx or the\ TCGA Cancer Expression tracks, where the\ heights of each bar indicate the expression value for the miRNA in a specific tissue. The tissues\ sampled are described in the table below:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
Bar ColorSample 1Sample 2
AdipocyteAdipocyte
ArteryArtery
ColonColon
Dura materDura mater
KidneyKidney
LiverLiver
LungLung
MuscleMuscle
MyocardiumMyocardium
SkinSkin
SpleenSpleen
StomachStomach
TestisTestis
ThyroidThyroid
Small intestine
Bone
Gallbladder
Fascia
Bladder
Epididymis
Tunica albuginea
Nervus intercostalis
Arachnoid mater
Brain
Small intestine duodenum
Small intestine jejunum
Pancreas
Kidney glandula suprarenalis
Kidney cortex renalis
Esophagus
Prostate
Bone marrow
Vein
Lymph node
Nerve not specified
Pleura
Pituitary gland
Spinal cord
Thalamus
Brain white matter
Nucleus caudatus
Kidney medulla renalis
Brain gray_matter
Cerebral cortex temporal
Cerebral cortex frontal
Cerebral cortex occipital
Cerebellum
\

\ The 14 shared tissues sampled across both individuals are presented in the same order for easier comparison.\

\ \

Data Access

\

\ The underlying expression matrix and TSI values can be obtained from the\ miRNA tissue atlas website, in the\ data_matrix_quantile.txt and tsi_quantile.csv files.\

\ \

References

\

\ Ludwig N, Leidinger P, Becker K, Backes C, Fehlmann T, Pallasch C, Rheinheimer S, Meder B,\ Stähler C, Meese E et al.\ \ Distribution of miRNA expression across human tissues.\ Nucleic Acids Res. 2016 May 5;44(8):3865-77.\ PMID: 26921406; PMC: PMC4856985\

\ expression 1 barChartBars adipocyte artery colon dura_mater kidney liver lung muscle myocardium skin spleen stomach testis thyroid small_intestine bone gallbladder fascia bladder epididymis tunica_albuginea nerve_nervus_intercostalis arachnoid_mater brain\ barChartColors #F7A028 #F73528 #DEBE98 #86BF80 #CDB79E #CDB79E #9ACD32 #7A67AE #9745AC #1E90FF \\#CDB79E #FFD39B #A6A6A6 #008B45 #CDB79E #BD34D7 #CDA7FE #4C7CD7 #CBD79E #A6F6A1 \\#A6CEA4 #FFD700 #86BF10 #EEEE00\ barChartLabel Tissue\ barChartMatrixUrl /gbdb/hgFixed/human/expMatrix/miRnaAtlasSample1Matrix.txt\ barChartSampleUrl /gbdb/hgFixed/human/expMatrix/miRnaAtlasSample1.txt\ barChartUnit Quantile_Normalized_Expression\ bigDataUrl /gbdb/hg38/bbi/miRnaAtlasSample1.bb\ configurable on\ group expression\ html miRnaAtlas\ longLabel miRNA Tissue Atlas microRna Expression\ maxLimit 52000\ parent miRnaAtlasSample1\ searchIndex name\ shortLabel Sample 1\ subGroups view=a_A\ track miRnaAtlasSample1BarChart\ url2 http://www.mirbase.org/cgi-bin/query.pl?terms=$$\ url2Label miRBase v21 Precursor Accession:\ visibility full\ covidHgiGwasR4PvalA2 Severe COVID vars bigLolly 9 + Severe respiratory COVID risk variants from the COVID-19 HGI GWAS Analysis A2 (4336 cases, 12 studies, Rel 4: Oct 2020) 0 1 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22, varRep 1 bigDataUrl /gbdb/hg38/covidHgiGwas/covidHgiGwasR4.A2.hg38.bb\ longLabel Severe respiratory COVID risk variants from the COVID-19 HGI GWAS Analysis A2 (4336 cases, 12 studies, Rel 4: Oct 2020)\ parent covidHgiGwasR4Pval on\ priority 1\ shortLabel Severe COVID vars\ track covidHgiGwasR4PvalA2\ snpediaAll SNPedia all bigBed 9 + SNPedia all SNPs (including empty pages) 0 1 50 0 100 152 127 177 0 0 0 https://www.snpedia.com/index.php/$$ phenDis 1 bigDataUrl /gbdb/hg38/bbi/snpediaAll.bb\ color 50,0,100\ exonNumbers off\ itemRgb on\ longLabel SNPedia all SNPs (including empty pages)\ mouseOverField note\ parent snpedia\ searchIndex name\ shortLabel SNPedia all\ track snpediaAll\ type bigBed 9 +\ url https://www.snpedia.com/index.php/$$\ urlLabel Link to SNPedia page:\ unipAliSwissprot SwissProt Aln. bigPsl UCSC alignment of SwissProt proteins to genome (dark blue: main isoform, light blue: alternative isoforms) 3 1 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorTickColor contrastingColor\ baseColorUseCds given\ bigDataUrl /gbdb/hg38/uniprot/unipAliSwissprot.bb\ indelDoubleInsert on\ indelQueryInsert on\ itemRgb on\ labelFields name,acc,uniprotName,geneName,hgncSym,refSeq,refSeqProt,ensProt\ longLabel UCSC alignment of SwissProt proteins to genome (dark blue: main isoform, light blue: alternative isoforms)\ mouseOverField protFullNames\ parent uniprot\ priority 1\ searchIndex name,acc\ shortLabel SwissProt Aln.\ showDiffBasesAllScales on\ skipFields isMain\ track unipAliSwissprot\ type bigPsl\ urls acc="https://www.uniprot.org/uniprot/$$" hgncId="https://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" refSeq="https://www.ncbi.nlm.nih.gov/nuccore/$$" refSeqProt="https://www.ncbi.nlm.nih.gov/protein/$$" ncbiGene="https://www.ncbi.nlm.nih.gov/gene/$$" entrezGene="https://www.ncbi.nlm.nih.gov/gene/$$" ensGene="https://www.ensembl.org/Gene/Summary?g=$$"\ visibility pack\ TotalCounts_Fwd Total counts of CAGE reads (fwd) bigWig Total counts of CAGE reads forward 2 1 255 0 0 255 127 127 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ctssTotalCounts.fwd.bw\ color 255,0,0\ dataVersion FANTOM5 reprocessed7\ longLabel Total counts of CAGE reads forward\ parent Total_counts_multiwig\ shortLabel Total counts of CAGE reads (fwd)\ subGroups category=total strand=forward\ track TotalCounts_Fwd\ type bigWig\ liftOverHg19 UCSC liftOver to hg19 chain hg19 UCSC liftOver alignments to hg19 0 1 0 0 0 127 127 127 0 0 0 map 1 chainLinearGap medium\ chainMinScore 3000\ longLabel UCSC liftOver alignments to hg19\ matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91\ matrixHeader A, C, G, T\ otherDb hg19\ parent liftHg19\ priority 1\ shortLabel UCSC liftOver to hg19\ track liftOverHg19\ type chain hg19\ comments UCSC Unusual Regions bigBed 9 + UCSC unusual regions on assembly structure (manually annotated) 1 1 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/problematic/comments.bb\ longLabel UCSC unusual regions on assembly structure (manually annotated)\ mouseOverField note\ noScoreFilter on\ parent problematic\ priority 1\ searchIndex name\ searchTrix /gbdb/hg38/problematic/notes.ix\ shortLabel UCSC Unusual Regions\ track comments\ type bigBed 9 +\ visibility dense\ umap24 Umap S24 bigBed 6 Single-read mappability with 24-mers 4 1 80 20 240 167 137 247 0 0 0 map 1 bigDataUrl /gbdb/hg38/hoffmanMappability/k24.Unique.Mappability.bb\ color 80,20,240\ longLabel Single-read mappability with 24-mers\ parent umapBigBed on\ priority 1\ shortLabel Umap S24\ subGroups view=SR\ track umap24\ lincRNAsAllCellTypeTopView lincRNA RNA-Seq bed 5 + lincRNA RNA-Seq reads expression abundances 1 1.1 0 0 0 127 127 127 0 0 0

Description

\ \

This track displays the Human Body Map lincRNAs (large intergenic non\ coding RNAs) and TUCPs (transcripts of uncertain coding potential), as well as their\ expression levels across 22 human tissues and cell lines. The Human Body Map catalog was generated\ by integrating previously existing annotation sources with transcripts that were de-novo assembled\ from RNA-Seq data. These transcripts were collected from ~4 billion RNA-Seq reads across 24 tissues \ and cell types.

\ \

Expression abundance was estimated by Cufflinks (Trapnell et al., 2010) based on RNA-Seq. \ Expression abundances were estimated on the gene locus level, rather than for each transcript \ separately and are given as raw FPKM. The prefixes tcons_ and tcons_l2_ are used to describe \ lincRNAs and TUCP transcripts, respectively. Specific details about the catalog generation and data \ sets used for this study can be found in Cabili et al (2011). Extended \ characterization of each transcript in the human body map catalog can be found at the Human lincRNA\ Catalog website.

\ \

Expression abundance scores range from 0 to 1000, and are displayed from light blue to dark blue\ respectively:

\ \ \

01000

\ \

Credits

\ \

The body map RNA-Seq data was kindly provided by the Gene Expression\ Applications research group at Illumina.

\ \

References

\ \

\ Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL.\ \ Integrative annotation of human large intergenic noncoding RNAs reveals global properties and\ specific subclasses.\ Genes Dev. 2011 Sep 15;25(18):1915-27.\ PMID: 21890647; PMC: PMC3185964\

\ \

\ Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter\ L.\ \ Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform\ switching during cell differentiation.\ Nat Biotechnol. 2010 May;28(5):511-5.\ PMID: 20436464; PMC: PMC3146043\

\ genes 1 compositeTrack on\ configurable on\ dimensions dimensionY=tissueType\ dragAndDrop subTracks\ html lincRNAs\ longLabel lincRNA RNA-Seq reads expression abundances\ noInherit on\ onlyVisibility dense\ origAssembly hg19\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 1.1\ shortLabel lincRNA RNA-Seq\ sortOrder view=+ tissueType=+\ subGroup1 view Views lincRNAsRefseqExp=RefSeq_Expression_Ratio\ subGroup2 tissueType Tissue_Type adipose=Adipose adrenal=Adrenal brain=Brain brain_r=Brain_R breast=Breast colon=Colon foreskin_r=Foreskin_R heart=Heart hlf_r1=hLF_r1 hlf_r2=hLF_r2 kidney=Kidney liver=Liver lung=Lung lymphnode=LymphNode ovary=Ovary placenta_r=Placenta_R prostate=Prostate skeletalmuscle=SkeletalMuscle testes=Testes testes_r=Testes_R thyroid=Thyroid whitebloodcell=WhiteBloodCell\ superTrack nonCodingRNAs dense\ track lincRNAsAllCellTypeTopView\ type bed 5 +\ lincRNAsAllCellType lincRNAsCellType bed 5 + lincRNA RNA-Seq reads expression abundances 1 1.1 0 60 120 127 157 187 1 0 0 genes 1 color 0, 60, 120\ longLabel lincRNA RNA-Seq reads expression abundances\ origAssembly hg19\ parent lincRNAsAllCellTypeTopView\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel lincRNAsCellType\ track lincRNAsAllCellType\ useScore 1\ view lincRNAsRefseqExp\ visibility dense\ wgEncodeRegTxn Transcription bigWig 0 65500 Transcription Levels Assayed by RNA-seq on 9 Cell Lines from ENCODE 0 1.1 0 0 0 127 127 127 0 0 0

Description

\

\ This track shows transcription levels for several cell types as assayed by high-throughput\ sequencing of polyadenylated RNA (RNA-seq).\ Additional views of this dataset and additional documentation on the methods used\ for this track are available at the\ ENCODE Caltech RNA-seq\ page. The data shown here are derived from the Raw Signal view from the paired \ 75-mer 200 bp insert size reads. The two replicates of the signal were pooled and normalized\ so that the total genome-wide signal sums to 10 billion.\

\ \

Display Conventions and Configuration

\

\ By default, this track uses a transparent overlay method of displaying data from a number of cell\ lines in the same vertical space. Each of the cell lines in this track\ is associated with a particular color, and these colors are relatively light and saturated so\ as to work best with the transparent overlay. The color of these tracks\ match their versions from their lifted source on the hg19 assembly. The colors are consistent with the\ other hg19 lifted tracks located in the ENCODE Regulation\ supertrack, with the exception being the DNase tracks, as they were not lifted from hg19 and are\ colored to reflect similarity of cell types.\

\ \

Credits

\

\ This track shows data from the\ Wold Lab at Caltech,\ as part of the ENCODE Consortium. \

\ \

Release Notes

\

\ This is release 2 (July 2012) of this track which includes two new subtracks for HeLa-S3 and HepG2.\

\ \

Data Release Policy

\

\ Primary ENCODE data produced during the 2007-2012 production phase were subject to a restriction\ period. However, the data here are past those restrictions and are freely available.\ The full data release policy for ENCODE is available\ here.\

\ regulation 1 aggregate transparentOverlay\ allButtonPair on\ container multiWig\ dragAndDrop subTracks\ longLabel Transcription Levels Assayed by RNA-seq on 9 Cell Lines from ENCODE\ maxHeightPixels 100:30:11\ noInherit on\ origAssembly hg19\ parent wgEncodeReg\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 1.1\ shortLabel Transcription\ showSubtrackColorOnUi on\ track wgEncodeRegTxn\ transformFunc LOG\ type bigWig 0 65500\ viewLimits 0:8\ visibility hide\ wgEncodeRegMarkH3k4me1 Layered H3K4Me1 bigWig 0 10000 H3K4Me1 Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE 0 1.2 0 0 0 127 127 127 0 0 0

Description

\

\ Chemical modifications (e.g., methylation and acetylation) to the histone proteins\ present in chromatin influence gene expression by changing how\ accessible the chromatin is to transcription. A specific modification of\ a specific histone protein is called a histone mark.\ This track shows the levels of enrichment of the H3K4Me1 histone mark across the genome as\ determined by a ChIP-seq assay. The H3K4me1 histone mark is the mono-methylation of lysine 4\ of the H3 histone protein, and it is associated with enhancers and with DNA regions downstream of\ transcription starts. Additional histone marks and other chromatin associated ChIP-seq data is\ available at the\ Broad Histone page.\

\ \

Display Conventions and Configuration

\

\ By default, this track uses a transparent overlay method of displaying data from a number of cell\ lines in the same vertical space. Each of the cell lines in this track\ is associated with a particular color, and these colors are relatively light and saturated so\ as to work best with the transparent overlay. The color of these tracks\ match their versions from their lifted source on the hg19 assembly. The colors are consistent with the\ other hg19 lifted tracks located in the ENCODE Regulation\ supertrack, with the exception being the DNase tracks, as they were not lifted from hg19 and are\ colored to reflect similarity of cell types.\

\ \

Credits

\

\ This track shows data from the Bernstein Lab at the Broad Institute, as part of\ the ENCODE Consortium.\

\ \

Data Release Policy

\

\ Primary ENCODE data produced during the 2007-2012 production phase were subject to a restriction\ period. However, the data here are past those restrictions and are freely available.\ The full data release policy for ENCODE is available\ here.\

\ regulation 1 aggregate transparentOverlay\ allButtonPair on\ container multiWig\ dragAndDrop subtracks\ longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE\ maxHeightPixels 100:30:11\ noInherit on\ origAssembly hg19\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 1.2\ shortLabel Layered H3K4Me1\ showSubtrackColorOnUi on\ superTrack wgEncodeReg hide\ track wgEncodeRegMarkH3k4me1\ type bigWig 0 10000\ viewLimits 0:50\ visibility hide\ robustPeaks TSS peaks bigBed 8 + FANTOM5: DPI peak, robust set 1 1.2 0 0 0 127 127 127 0 0 0

Description

\

\ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\

\ \

Display Conventions and Configuration

\ \

Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

\ \

Methods

\

Protocol

\

Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE (Kanamori-Katyama\ et al. 2011).\

    \
  • hCAGE
    • \
  • LQhCAGE
    • \
\

\

Samples

\

Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\

    \
  • Primary cell
    • \
  • Tissue
    • \
  • Cell Line
    • \
  • Time course
    • \
  • Fractionation
    • \
\

\

TSS peaks

\

TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as a\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They are\ named "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or "p@CHROM:START..END,STRAND"\ otherwise. The summary tracks consist of the TSS (CAGE) peaks and summary profiles of TSS\ activities (total and maximum values). The summary track consists of the following tracks.\

    \
  • TSS (CAGE) peaks\
      \
    • the robust peaks
      • \
    \
    • \
  • TSS summary profiles\
      \
    • Total counts and TPM (tags per million) in all the samples
      • \
    • Maximum counts and TPM among the samples
      • \
    \
    • \
\ \

TSS activity

\

\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as TPM (tags per million).\

\ \
\
Categories of individual samples
\
- Cell Line hCAGE
\
- Cell Line LQhCAGE
\
- fractionation hCAGE
\
- Primary cell hCAGE
\
- Primary cell LQhCAGE
\
- Time course hCAGE
\
- Tissue hCAGE
\
\ \

Data Access

\

\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\ \

\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.

\ \

Credits

\ \

\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, the Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.

\ \

References

\

\ FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\ Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\ \ A promoter-level mammalian expression atlas.\ Nature. 2014 Mar 27;507(7493):462-70.\ PMID: 24670764; PMC: PMC4529748\

\ \

\ Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\ N, Daub CO et al.\ \ Unamplified cap analysis of gene expression on a single-molecule sequencer.\ Genome Res. 2011 Jul;21(7):1150-9.\ PMID: 21596820; PMC: PMC3129257\

\ \

\ Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\ Ishikawa-Kato S et al.\ \ Gateways to the FANTOM5 promoter level mammalian expression atlas.\ Genome Biol. 2015 Jan 5;16(1):22.\ PMID: 25723102; PMC: PMC4310165\

\ regulation 1 bigDataUrl /gbdb/hg38/fantom5/hg38.cage_peak.bb\ boxedCfg on\ colorByStrand 255,0,0 0,0,255\ dataVersion FANTOM5 reprocessed7\ exonArrows on\ html fantom5.html\ itemRgb on\ longLabel FANTOM5: DPI peak, robust set\ priority 1.2\ searchIndex name\ searchTrix hg38.cage_peak.bb.ix\ shortLabel TSS peaks\ showSubtrackColorOnUi on\ subGroups group=peaks\ superTrack fantom5 dense\ track robustPeaks\ type bigBed 8 +\ visibility dense\ wgEncodeRegMarkH3k4me3 Layered H3K4Me3 bigWig 0 10000 H3K4Me3 Mark (Often Found Near Promoters) on 7 cell lines from ENCODE 0 1.3 0 0 0 127 127 127 0 0 0

Description

\

\ Chemical modifications (e.g., methylation and acetylation) to the histone proteins\ present in chromatin influence gene expression by changing how\ accessible the chromatin is to transcription. A specific modification of\ a specific histone protein is called a histone mark.\ This track shows the levels of enrichment of the H3K4Me3 histone mark across the genome as\ determined by a ChIP-seq assay. The H3K4Me3 histone mark is the tri-methylation of lysine 4 of the\ H3 histone protein, and it is associated with promoters that are active or poised to be\ activated. Additional histone marks and other chromatin associated ChIP-seq data is available at \ the Broad Histone\ page.\

\ \

Display Conventions and Configuration

\

\ By default, this track uses a transparent overlay method of displaying data from a number of cell\ lines in the same vertical space. Each of the cell lines in this track\ is associated with a particular color, and these colors are relatively light and saturated so\ as to work best with the transparent overlay. The color of these tracks\ match their versions from their lifted source on the hg19 assembly. The colors are consistent with the\ other hg19 lifted tracks located in the ENCODE Regulation\ supertrack, with the exception being the DNase tracks, as they were not lifted from hg19 and are\ colored to reflect similarity of cell types.\

\ \

Credits

\

\ This track shows data from the Bernstein Lab at the Broad Institute, as part of\ the ENCODE Consortium.\

\ \

Data Release Policy

\

\ Primary ENCODE data produced during the 2007-2012 production phase were subject to a restriction\ period. However, the data here are past those restrictions and are freely available.\ The full data release policy for ENCODE is available\ here.\

\ regulation 1 aggregate transparentOverlay\ allButtonPair on\ container multiWig\ dragAndDrop subtracks\ longLabel H3K4Me3 Mark (Often Found Near Promoters) on 7 cell lines from ENCODE\ maxHeightPixels 100:30:11\ noInherit on\ origAssembly hg19\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 1.3\ shortLabel Layered H3K4Me3\ showSubtrackColorOnUi on\ superTrack wgEncodeReg hide\ track wgEncodeRegMarkH3k4me3\ type bigWig 0 10000\ viewLimits 0:150\ visibility hide\ Total_counts_multiwig Total counts of CAGE reads bigWig 0 100 FANTOM5: Total counts of CAGE reads 2 1.3 0 0 0 127 127 127 0 0 0

Description

\

\ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\

\ \

Display Conventions and Configuration

\ \

Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

\ \

Methods

\

Protocol

\

Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE (Kanamori-Katyama\ et al. 2011).\

    \
  • hCAGE
    • \
  • LQhCAGE
    • \
\

\

Samples

\

Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\

    \
  • Primary cell
    • \
  • Tissue
    • \
  • Cell Line
    • \
  • Time course
    • \
  • Fractionation
    • \
\

\

TSS peaks

\

TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as a\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They are\ named "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or "p@CHROM:START..END,STRAND"\ otherwise. The summary tracks consist of the TSS (CAGE) peaks and summary profiles of TSS\ activities (total and maximum values). The summary track consists of the following tracks.\

    \
  • TSS (CAGE) peaks\
      \
    • the robust peaks
      • \
    \
    • \
  • TSS summary profiles\
      \
    • Total counts and TPM (tags per million) in all the samples
      • \
    • Maximum counts and TPM among the samples
      • \
    \
    • \
\ \

TSS activity

\

\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as TPM (tags per million).\

\ \
\
Categories of individual samples
\
- Cell Line hCAGE
\
- Cell Line LQhCAGE
\
- fractionation hCAGE
\
- Primary cell hCAGE
\
- Primary cell LQhCAGE
\
- Time course hCAGE
\
- Tissue hCAGE
\
\ \

Data Access

\

\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\ \

\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.

\ \

Credits

\ \

\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, the Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.

\ \

References

\

\ FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\ Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\ \ A promoter-level mammalian expression atlas.\ Nature. 2014 Mar 27;507(7493):462-70.\ PMID: 24670764; PMC: PMC4529748\

\ \

\ Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\ N, Daub CO et al.\ \ Unamplified cap analysis of gene expression on a single-molecule sequencer.\ Genome Res. 2011 Jul;21(7):1150-9.\ PMID: 21596820; PMC: PMC3129257\

\ \

\ Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\ Ishikawa-Kato S et al.\ \ Gateways to the FANTOM5 promoter level mammalian expression atlas.\ Genome Biol. 2015 Jan 5;16(1):22.\ PMID: 25723102; PMC: PMC4310165\

\ regulation 0 aggregate transparentOverlay\ autoScale off\ configurable on\ container multiWig\ dataVersion FANTOM5 reprocessed7\ dragAndDrop subTracks\ html fantom5.html\ longLabel FANTOM5: Total counts of CAGE reads\ maxHeightPixels 64:64:11\ priority 1.3\ shortLabel Total counts of CAGE reads\ showSubtrackColorOnUi on\ subGroups group=counts\ superTrack fantom5 full\ track Total_counts_multiwig\ type bigWig 0 100\ viewLimits 0:100\ visibility full\ wgEncodeRegMarkH3k27ac Layered H3K27Ac bigWig 0 10000 H3K27Ac Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE 2 1.4 0 0 0 127 127 127 0 0 0

Description

\

\ Chemical modifications (e.g., methylation and acetylation) to the histone proteins\ present in chromatin influence gene expression by changing how\ accessible the chromatin is to transcription. A specific modification of\ a specific histone protein is called a histone mark.\ This track shows the levels of enrichment of the H3K27Ac histone mark across the genome as\ determined by a ChIP-seq assay. The H3K27Ac histone mark is the acetylation of lysine 27 of the H3\ histone protein, and it is thought to enhance transcription possibly by blocking the\ spread of the repressive histone mark H3K27Me3. Additional histone marks and other chromatin \ associated ChIP-seq data is available at the \ Broad Histone page.\

\ \

Display Conventions and Configuration

\

\ By default, this track uses a transparent overlay method of displaying data from a number of cell\ lines in the same vertical space. Each of the cell lines in this track\ is associated with a particular color, and these colors are relatively light and saturated so\ as to work best with the transparent overlay. The color of these tracks\ match their versions from their lifted source on the hg19 assembly. The colors are consistent with the \ other hg19 lifted tracks located in the ENCODE Regulation\ supertrack, with the exception being the DNase tracks, as they were not lifted from hg19 and are\ colored to reflect similarity of cell types. \

\ \

Credits

\

\ This track shows data from the Bernstein Lab at the Broad Institute, as part of\ the ENCODE Consortium.\

\ \

Data Release Policy

\

\ Primary ENCODE data produced during the 2007-2012 production phase were subject to a restriction\ period. However, the data here are past those restrictions and are freely available.\ The full data release policy for ENCODE is available\ here.\

\ regulation 1 aggregate transparentOverlay\ allButtonPair on\ container multiWig\ dragAndDrop subtracks\ longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE\ maxHeightPixels 100:30:11\ noInherit on\ origAssembly hg19\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 1.4\ shortLabel Layered H3K27Ac\ showSubtrackColorOnUi on\ superTrack wgEncodeReg full\ track wgEncodeRegMarkH3k27ac\ type bigWig 0 10000\ viewLimits 0:100\ visibility full\ Max_counts_multiwig Max counts of CAGE reads bigWig 0 100 FANTOM5: Max counts of CAGE reads 2 1.4 0 0 0 127 127 127 0 0 0

Description

\

\ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\

\ \

Display Conventions and Configuration

\ \

Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

\ \

Methods

\

Protocol

\

Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE (Kanamori-Katyama\ et al. 2011).\

    \
  • hCAGE
    • \
  • LQhCAGE
    • \
\

\

Samples

\

Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\

    \
  • Primary cell
    • \
  • Tissue
    • \
  • Cell Line
    • \
  • Time course
    • \
  • Fractionation
    • \
\

\

TSS peaks

\

TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as a\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They are\ named "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or "p@CHROM:START..END,STRAND"\ otherwise. The summary tracks consist of the TSS (CAGE) peaks and summary profiles of TSS\ activities (total and maximum values). The summary track consists of the following tracks.\

    \
  • TSS (CAGE) peaks\
      \
    • the robust peaks
      • \
    \
    • \
  • TSS summary profiles\
      \
    • Total counts and TPM (tags per million) in all the samples
      • \
    • Maximum counts and TPM among the samples
      • \
    \
    • \
\ \

TSS activity

\

\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as TPM (tags per million).\

\ \
\
Categories of individual samples
\
- Cell Line hCAGE
\
- Cell Line LQhCAGE
\
- fractionation hCAGE
\
- Primary cell hCAGE
\
- Primary cell LQhCAGE
\
- Time course hCAGE
\
- Tissue hCAGE
\
\ \

Data Access

\

\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\ \

\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.

\ \

Credits

\ \

\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, the Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.

\ \

References

\

\ FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\ Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\ \ A promoter-level mammalian expression atlas.\ Nature. 2014 Mar 27;507(7493):462-70.\ PMID: 24670764; PMC: PMC4529748\

\ \

\ Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\ N, Daub CO et al.\ \ Unamplified cap analysis of gene expression on a single-molecule sequencer.\ Genome Res. 2011 Jul;21(7):1150-9.\ PMID: 21596820; PMC: PMC3129257\

\ \

\ Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\ Ishikawa-Kato S et al.\ \ Gateways to the FANTOM5 promoter level mammalian expression atlas.\ Genome Biol. 2015 Jan 5;16(1):22.\ PMID: 25723102; PMC: PMC4310165\

\ regulation 0 aggregate transparentOverlay\ autoScale off\ configurable on\ container multiWig\ dataVersion FANTOM5 reprocessed7\ dragAndDrop subTracks\ html fantom5.html\ longLabel FANTOM5: Max counts of CAGE reads\ maxHeightPixels 64:64:11\ priority 1.4\ shortLabel Max counts of CAGE reads\ showSubtrackColorOnUi on\ subGroups group=counts\ superTrack fantom5 full\ track Max_counts_multiwig\ type bigWig 0 100\ viewLimits 0:100\ visibility full\ wgEncodeRegDnaseClustered DNase Clusters bed 5 . DNase I Hypersensitivity Peak Clusters from ENCODE (95 cell types) 0 1.6 0 0 0 127 127 127 1 0 0

Description

\

\ This track shows clusters of DNaseI hypersensitivity derived from assays in 95 cell types\ by the\ John Stamatoyannapoulos lab\ at the University of Washington from September 2007 to January 2011, as part of the\ ENCODE project first production phase.\ Regulatory regions in general, and promoters in particular, tend to be DNase-sensitive. \

\ \

\ Additional views of this data sites are displayed from the\ DNaseI HS track.\ The peaks in that track are the basis for the clusters shown here, \ which combine data from peaks from the different cell lines.\ Please note that track colors for the DNase tracks are based on similiarity of cell types,\ while there is different coloring for cell types on the ENCODE hg38\ Transcription track,\ Layered H3K4Me1 track,\ Layered H3K4Me3 track, and\ Layered H3K27Ac track,\ which match the coloring used in their previous versions lifted from the hg19 assembly.\

\

\ \

Display Conventions and Configuration

\

\ A gray box indicates the extent of the hypersensitive region. \ The darkness is proportional to the maximum signal strength observed in any cell line. \ The number to the left of the box shows how many cell lines are hypersensitive in the region. \ The track can be configured to restrict the display to elements above a specified score \ in the range 1-1000 (where score is based on signal strength).\

\ \

Methods

\

\ Raw sequence data files were processed by the UCSC ENCODE DNase analysis pipeline (July 2014\ specification), diagrammed here:\

\ \
\ ENCODE DNase Pipeline\ Credit: Qian Alvin Qin, X. Liu lab\
\ \

\ Briefly, sequence files were aligned to the hg38 (GRCh38) genome assembly augmented with 'sponge'\ sequence (ref). Multi-mapped reads were removed, as were reads that aligned to 'sponge' or\ mitochondiral sequence. Results from all replicates were pooled, and further processed by\ the Hotspot program to call peaks.\

\ \

\ Peaks of DNaseI hypersensitivity from the ENCODE DNase Analysis Pipeline at UCSC\ were assigned normalized scores (by UCSC regClusterMakeTableOfTables) in the range 0-1000 based\ on the \ narrowPeak\ signalValue and then clustered on score (by UCSC regCluster) to generate singly-linked clusters. \ Additional documentation on the methods used to identify hypersensitive sites are \ available from the\ DNaseI HS track.\

\ \

Credits

\

\ This track is based on sequence data from the University of Washington ENCODE group, \ with subsequent processing by UCSC.\ For additional credits and references, see the\ DNaseI HS track.\

\ regulation 1 controlledVocabulary cellType=wgEncodeCell treatment=wgEncodeTreatment\ group regulation\ html wgEncodeRegDnaseClustered\ inputTableFieldDisplay cellType treatment\ inputTrackTable wgEncodeRegDnaseClusteredInputs\ longLabel DNase I Hypersensitivity Peak Clusters from ENCODE (95 cell types)\ priority 1.6\ scoreFilter 200\ scoreFilterLimits 1:1000\ shortLabel DNase Clusters\ sourceTable wgEncodeRegDnaseClusteredSources\ spectrum on\ superTrack wgEncodeReg hide\ track wgEncodeRegDnaseClustered\ type bed 5 .\ wgEncodeRegDnaseWig DNase Signal bigWig 0 10000 DNase I Hypersensitivity Signal Colored by Similarity from ENCODE 0 1.8 0 0 0 127 127 127 0 0 0

Description

\

\ This track provides an integrated display of DNase hypersensitivity in multiple\ cell types using overlapping colored graphs of signal density with graph colors\ assigned to cell types based on similarity of signal. The track is based on\ results of experiments performed by the John Stamatoyannapoulos lab at the\ University of Washington from September 2007 to January 2011 as part of the\ ENCODE project first production phase.

\

\ The signal graphs displayed here are also included in the comprehensive\ DNaseI HS track,\ which also provides peak and region calls and uses the same coloring based on\ similiarity of cell types (please note there is different coloring on the ENCODE hg38\ Transcription track,\ Layered H3K4Me1 track,\ Layered H3K4Me3 track, and\ Layered H3K27Ac track,\ which match the coloring used in their previous versions lifted from the hg19 assembly). \

\ \

Methods

\

\ Raw sequence data files were processed by the UCSC ENCODE DNase analysis pipeline\ described in the \ DNaseI HS\ track description.\ Signal graphs were normalized so the average value genome-wide is 1.\ Colors for the signal graphs were assigned by the UCSC BigWigCluster tool.\ \

\ The cell types were clustered into a binary tree, a rainbow was cast to the leaf nodes providing coloring based on similarity. \

\
\ ENCODE cell clustering by similarity\ Credit: Chris Eisenhart, J. Kent lab \
\

\ \

Credits

\

\ The processed data for this track were generated at UCSC.\ Credits for the primary data underlying this track are included in the\ DNaseI HS\ track description.\

\ \

References

\

\ Miga KH, Eisenhart C, Kent WJ.\ \ Utilizing mapping targets of sequences underrepresented in the reference assembly to reduce false\ positive alignments.\ Nucleic Acids Res. 2015 Nov 16;43(20):e133.\ PMID: 26163063\

\

\ Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang\ H, Vernot B et al.\ \ The accessible chromatin landscape of the human genome.\ Nature. 2012 Sep 6;489(7414):75-82.\ PMID: 22955617; PMC: PMC3721348\

\ \

\ See also the references in the\ DNaseI HS\ track.\

\ regulation 1 aggregate transparentOverlay\ configurable on\ container multiWig\ controlledVocabulary cellType=wgEncodeCell\ dimensions dimA=tissue dimB=cancer\ filterComposite dimA dimB\ group regulation\ html wgEncodeRegDnaseSignal\ longLabel DNase I Hypersensitivity Signal Colored by Similarity from ENCODE\ maxHeightPixels 128:64:11\ priority 1.8\ shortLabel DNase Signal\ showSubtrackColorOnUi on\ sortOrder subtrackColor=+ cellType=+ tissue=+\ subGroup1 cellType Cell_Type A549=A549 AG04449=AG04449 AG04450=AG04450 AG09309=AG09309 AG09319=AG09319 AG10803=AG10803 AoAF=AoAF bone_marrow_MSC=bone_marrow_MSC BE2_C=BE2_C BJ=BJ CD20_RO01778=CD20+_RO01778 Caco-2=Caco-2 GM04503=GM04503 GM04504=GM04504 GM06990=GM06990 GM12865=GM12865 GM12878=GM12878 H7-hESC=H7-hESC HA-h=HA-h HA-sp=HA-sp HAEpiC=HAEpiC HAc=HAc HBMEC=HBMEC HBVSMC=HBVSMC HCF=HCF HCFaa=HCFaa HCM=HCM HCPEpiC=HCPEpiC HCT-116=HCT-116 HConF=HConF HEEpiC=HEEpiC HFF-Myc=HFF-Myc HFF=HFF HGF=HGF HIPEpiC=HIPEpiC HL-60=HL-60 HMEC=HMEC HMF=HMF HMVEC-LBl=HMVEC-LBl HMVEC-LLy=HMVEC-LLy HMVEC-dAd=HMVEC-dAd HMVEC-dBl-Ad=HMVEC-dBl-Ad HMVEC-dBl-Neo=HMVEC-dBl-Neo HMVEC-dLy-Ad=HMVEC-dLy-Ad HMVEC-dLy-Neo=HMVEC-dLy-Neo HMVEC-dNeo=HMVEC-dNeo HNPCEpiC=HNPCEpiC HPAF=HPAF HPF=HPF HPdLF=HPdLF HRCEpiC=HRCEpiC HRE=HRE HRGEC=HRGEC HRPEpiC=HRPEpiC HSMM=HSMM HSMMtube=HSMMtube HUVEC=HUVEC HVMF=HVMF HeLa-S3=HeLa-S3 HepG2=HepG2 Jurkat=Jurkat K562=K562 LHCN-M2=LHCN-M2 LNCaP=LNCaP M059J=M059J MCF-7=MCF-7 Monocytes_CD14_RO01746=Monocytes-CD14+_RO01746 NB4=NB4 NH-A=NH-A NHBE_RA=NHBE_RA NHDF-Ad=NHDF-Ad NHDF-neo=NHDF-neo NHEK=NHEK NHLF=NHLF NT2-D1=NT2-D1 PANC-1=PANC-1 PrEC=PrEC RPMI-7951=RPMI-7951 RPTEC=RPTEC SAEC=SAEC SK-N-MC=SK-N-MC SK-N-SH_RA=SK-N-SH_RA SKMC=SKMC T-47D=T-47D Th1=Th1 Th1_Wb54553204=Th1_Wb54553204 Th2=Th2 WERI-Rb-1=WERI-Rb-1 WI-38=WI-38\ subGroup2 treatment Treatment diffProtA_5d=diffProtA_5d diffProtA_14d=diffProtA_14d DIFF_4d=DIFF_4d n_a=n/a 4OHTAM_20nM_72hr=4OHTAM_20nM_72hr Estradiol_ctrl_0hr=Estradiol_ctrl_0hr Estradiol_100nM_1hr=Estradiol_100nM_1hr\ subGroup3 tissue Tissue blood=blood blood_vessel=blood_vessel bone_marrow=bone_marrow brain=brain breast=breast cervix=cervix colon=colon embryo=embryo esophagus=esophagus eye=eye heart=heart kidney=kidney liver=liver lung=lung muscle=muscle pancreas=pancreas periodontium=periodontium periodontium=periodontium placenta=placenta prostate=prostate skin=skin spinal_cord=spinal_cord testis=testis\ subGroup4 cancer Cancer cancer=cancer normal=normal unknown=unknown\ subGroup5 subtrackColor Similarity\ superTrack wgEncodeReg hide\ track wgEncodeRegDnaseWig\ type bigWig 0 10000\ viewLimits 0:200\ visibility hide\ wgEncodeRegDnase DNase HS bed 3 + DNase I Hypersensitivity in 95 cell types from ENCODE 0 1.9 0 0 0 127 127 127 0 0 0

Description

\

\ These tracks contain the results of DNase I hypersensitivity experiments performed by the\ John Stamatoyannapoulos lab\ at the University of Washington from September 2007 to January 2011, as part of the\ ENCODE project first production phase.\ Colors were assigned to cell types based on similarity of signal.\

\ \

\ Other views of this data (along with additional documentation) are available from the hg19\ ENCODE UW DNaseI HS track.\

\ \

Display Conventions and Configuration

\

\ This track is a composite annotation track containing multiple subtracks, one for each cell type.\ The display mode and filtering of each subtrack can be individually controlled. \ For more information about track configuration, see\ Configuring Multi-View Tracks.\

\ \

Methods

\

\ Raw sequence data files were processed by the UCSC ENCODE DNase analysis pipeline (July 2014 specification), diagrammed here:\

\ ENCODE DNase Pipeline\ Credit: Qian Alvin Qin, X. Liu lab\
\

\ Briefly, sequence files were aligned to the hg38 (GRCh38) genome assembly augmented with 'sponge'\ sequence (ref). Multi-mapped reads were removed, as were reads that aligned to 'sponge' or\ mitochondiral sequence. Results from all replicates were pooled, and further processed by\ the Hotspot program to call peaks as well as broader regions of activity ('hotspots'), and to\ create signal density graphs.\ Signal graphs were normalized so the average value genome-wide is 1.\

\

\ The cell types were clustered into a binary tree, a rainbow was cast to the leaf nodes providing coloring based on similarity.\

\
\ ENCODE cell clustering by similarity\ Credit: Chris Eisenhart, J. Kent lab \
\ (Please note there is different coloring on the ENCODE hg38\ Transcription track,\ Layered H3K4Me1 track,\ Layered H3K4Me3 track, and\ Layered H3K27Ac track,\ which match the coloring used in their previous versions lifted from the hg19 assembly).\

Credits

\

\ The processed data for this track were produced by UCSC. Credits for the primary data \ underlying this track are included in the\ ENCODE UW DNaseI HS track\ description.\

\ \

References

\

\ Miga KH, Eisenhart C, Kent WJ.\ \ Utilizing mapping targets of sequences underrepresented in the reference assembly to reduce false\ positive alignments.\ Nucleic Acids Res. 2015 Nov 16;43(20):e133.\ PMID: 26163063\

\

\ Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang\ H, Vernot B et al.\ \ The accessible chromatin landscape of the human genome.\ Nature. 2012 Sep 6;489(7414):75-82.\ PMID: 22955617; PMC: PMC3721348\

\ \

\ See also the references in the\ ENCODE UW DNaseI HS\ track.\

\ regulation 1 compositeTrack on\ controlledVocabulary cellType=wgEncodeCell\ dimensions dimA=cellType dimB=tissue dimC=cancer\ dragAndDrop subTracks\ filterComposite dimA dimB dimC\ group regulation\ html wgEncodeRegDnase\ longLabel DNase I Hypersensitivity in 95 cell types from ENCODE\ noInherit on\ priority 1.9\ shortLabel DNase HS\ showSubtrackColorOnUi on\ sortOrder view=+ subtrackColor=+ cellType=+ tissue=+\ subGroup1 view Views a_Peaks=Peaks b_Hot=Hotspots c_Signal=Signal\ subGroup2 cellType Cell_Type A549=A549 AG04449=AG04449 AG04450=AG04450 AG09309=AG09309 AG09319=AG09319 AG10803=AG10803 AoAF=AoAF bone_marrow_MSC=bone_marrow_MSC BE2_C=BE2_C BJ=BJ CD20_RO01778=CD20+_RO01778 Caco-2=Caco-2 GM04503=GM04503 GM04504=GM04504 GM06990=GM06990 GM12865=GM12865 GM12878=GM12878 H7-hESC=H7-hESC HA-h=HA-h HA-sp=HA-sp HAEpiC=HAEpiC HAc=HAc HBMEC=HBMEC HBVSMC=HBVSMC HCF=HCF HCFaa=HCFaa HCM=HCM HCPEpiC=HCPEpiC HCT-116=HCT-116 HConF=HConF HEEpiC=HEEpiC HFF-Myc=HFF-Myc HFF=HFF HGF=HGF HIPEpiC=HIPEpiC HL-60=HL-60 HMEC=HMEC HMF=HMF HMVEC-LBl=HMVEC-LBl HMVEC-LLy=HMVEC-LLy HMVEC-dAd=HMVEC-dAd HMVEC-dBl-Ad=HMVEC-dBl-Ad HMVEC-dBl-Neo=HMVEC-dBl-Neo HMVEC-dLy-Ad=HMVEC-dLy-Ad HMVEC-dLy-Neo=HMVEC-dLy-Neo HMVEC-dNeo=HMVEC-dNeo HNPCEpiC=HNPCEpiC HPAF=HPAF HPF=HPF HPdLF=HPdLF HRCEpiC=HRCEpiC HRE=HRE HRGEC=HRGEC HRPEpiC=HRPEpiC HSMM=HSMM HSMMtube=HSMMtube HUVEC=HUVEC HVMF=HVMF HeLa-S3=HeLa-S3 HepG2=HepG2 Jurkat=Jurkat K562=K562 LHCN-M2=LHCN-M2 LNCaP=LNCaP M059J=M059J MCF-7=MCF-7 Monocytes_CD14_RO01746=Monocytes-CD14+_RO01746 NB4=NB4 NH-A=NH-A NHBE_RA=NHBE_RA NHDF-Ad=NHDF-Ad NHDF-neo=NHDF-neo NHEK=NHEK NHLF=NHLF NT2-D1=NT2-D1 PANC-1=PANC-1 PrEC=PrEC RPMI-7951=RPMI-7951 RPTEC=RPTEC SAEC=SAEC SK-N-MC=SK-N-MC SK-N-SH_RA=SK-N-SH_RA SKMC=SKMC T-47D=T-47D Th1=Th1 Th1_Wb54553204=Th1_Wb54553204 Th2=Th2 WERI-Rb-1=WERI-Rb-1 WI-38=WI-38\ subGroup3 treatment Treatment diffProtA_5d=diffProtA_5d diffProtA_14d=diffProtA_14d DIFF_4d=DIFF_4d n_a=n/a OHTAM_20nM_72hr=4OHTAM_20nM_72hr Estradiol_ctrl_0hr=Estradiol_ctrl_0hr Estradiol_100nM_1hr=Estradiol_100nM_1hr\ subGroup4 tissue Tissue blood=blood blood_vessel=blood_vessel bone_marrow=bone_marrow brain=brain breast=breast cervix=cervix colon=colon embryo=embryo esophagus=esophagus eye=eye heart=heart kidney=kidney liver=liver lung=lung muscle=muscle pancreas=pancreas periodontium=periodontium periodontium=periodontium placenta=placenta prostate=prostate skin=skin spinal_cord=spinal_cord testis=testis\ subGroup5 cancer Cancer cancer=cancer normal=normal unknown=unknown\ subGroup6 subtrackColor Similarity\ superTrack wgEncodeReg hide\ track wgEncodeRegDnase\ type bed 3 +\ wgEncodeRegDnaseHotspot Hotspots bed 3 + Hotspot5 hotspot calls on BWA. Dupe, sponge and mitochondria filtered 0 1.9 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Hotspot5 hotspot calls on BWA. Dupe, sponge and mitochondria filtered\ minGrayLevel 2\ parent wgEncodeRegDnase\ scoreFilter 0\ scoreFilterLimits 0:1000\ shortLabel Hotspots\ spectrum on\ track wgEncodeRegDnaseHotspot\ view b_Hot\ visibility hide\ wgEncodeRegDnasePeak Peaks narrowPeak HotSpot5 peak calls on BWA. Dupe, sponge and mitochondria filtered 1 1.9 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HotSpot5 peak calls on BWA. Dupe, sponge and mitochondria filtered\ minGrayLevel 2\ parent wgEncodeRegDnase\ scoreFilter 0\ scoreFilterLimits 0:1000\ shortLabel Peaks\ spectrum on\ track wgEncodeRegDnasePeak\ type narrowPeak\ view a_Peaks\ visibility dense\ wgEncodeRegDnaseSignal Signal bed 3 + HotSpot5 signal on BWA. Dupe, sponge and mitochondria filtered 0 1.9 0 0 0 127 127 127 0 0 0

Description

\

\ This track provides an integrated display of DNase hypersensitivity in multiple\ cell types using overlapping colored graphs of signal density with graph colors\ assigned to cell types based on similarity of signal. The track is based on\ results of experiments performed by the John Stamatoyannapoulos lab at the\ University of Washington from September 2007 to January 2011 as part of the\ ENCODE project first production phase.

\

\ The signal graphs displayed here are also included in the comprehensive\ DNaseI HS track,\ which also provides peak and region calls and uses the same coloring based on\ similiarity of cell types (please note there is different coloring on the ENCODE hg38\ Transcription track,\ Layered H3K4Me1 track,\ Layered H3K4Me3 track, and\ Layered H3K27Ac track,\ which match the coloring used in their previous versions lifted from the hg19 assembly). \

\ \

Methods

\

\ Raw sequence data files were processed by the UCSC ENCODE DNase analysis pipeline\ described in the \ DNaseI HS\ track description.\ Signal graphs were normalized so the average value genome-wide is 1.\ Colors for the signal graphs were assigned by the UCSC BigWigCluster tool.\ \

\ The cell types were clustered into a binary tree, a rainbow was cast to the leaf nodes providing coloring based on similarity. \

\
\ ENCODE cell clustering by similarity\ Credit: Chris Eisenhart, J. Kent lab \
\

\ \

Credits

\

\ The processed data for this track were generated at UCSC.\ Credits for the primary data underlying this track are included in the\ DNaseI HS\ track description.\

\ \

References

\

\ Miga KH, Eisenhart C, Kent WJ.\ \ Utilizing mapping targets of sequences underrepresented in the reference assembly to reduce false\ positive alignments.\ Nucleic Acids Res. 2015 Nov 16;43(20):e133.\ PMID: 26163063\

\

\ Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang\ H, Vernot B et al.\ \ The accessible chromatin landscape of the human genome.\ Nature. 2012 Sep 6;489(7414):75-82.\ PMID: 22955617; PMC: PMC3721348\

\ \

\ See also the references in the\ DNaseI HS\ track.\

\ regulation 1 autoScale off\ longLabel HotSpot5 signal on BWA. Dupe, sponge and mitochondria filtered\ maxHeightPixels 100:32:16\ maxLimit 100000\ minLimit 0\ parent wgEncodeRegDnase\ shortLabel Signal\ track wgEncodeRegDnaseSignal\ view c_Signal\ viewLimits 0:100\ visibility hide\ windowingFunction mean+whiskers\ encRegTfbsClustered TF Clusters factorSource Transcription Factor ChIP-seq Clusters (340 factors, 129 cell types) from ENCODE 3 0 1.9 0 0 0 127 127 127 1 0 0 http://www.factorbook.org/mediawiki/index.php/$$

Description

\

\ This track shows regions of transcription factor binding derived from a large collection\ of ChIP-seq experiments performed by the ENCODE project between February 2011 and November 2018,\ spanning the first production phase of ENCODE ("ENCODE 2") through the second full production\ phase ("ENCODE 3").\

\

\ Transcription factors (TFs) are proteins that bind to DNA and interact with RNA polymerases to\ regulate gene expression. Some TFs contain a DNA binding domain and can bind directly to \ specific short DNA sequences ('motifs');\ others bind to DNA indirectly through interactions with TFs containing a DNA binding domain.\ High-throughput antibody capture and sequencing methods (e.g. chromatin immunoprecipitation\ followed by sequencing, or 'ChIP-seq') can be used to identify regions of\ TF binding genome-wide. These regions are commonly called ChIP-seq peaks.

\

\ ENCODE TF ChIP-seq data were processed using the \ ENCODE Transcription Factor ChIP-seq Processing Pipeline to generate peaks of TF binding.\ Peaks from 1264 experiments (1256 in hg38) representing 338 transcription factors \ (340 in hg38) in 130 cell types (129 in hg38) are combined here into clusters to produce a \ summary display showing occupancy regions for each factor.\ The underlying ChIP-seq peak data are available from the\ ENCODE 3 TF ChIP Peaks tracks (\ hg19,\ hg38)

\ \

Display Conventions

\

\ A gray box encloses each peak cluster of transcription factor occupancy, with the\ darkness of the box being proportional to the maximum signal strength observed in any cell type\ contributing to the cluster. The HGNC gene name for the transcription factor is shown \ to the left of each cluster.

\

\ To the right of the cluster a configurable label can optionally display information about the\ cell types contributing to the cluster and how many cell types were assayed for the factor\ (count where detected / count where assayed).\ For brevity in the display, each cell type is abbreviated to a single letter.\ The darkness of the letter is proportional to the signal strength observed in the cell line. \ Abbreviations starting with capital letters designate\ ENCODE cell types initially identified for intensive study, \ while those starting with lowercase letters designate cell lines added later in the project.

\

\ Click on a peak cluster to see more information about the TF/cell assays contributing to the\ cluster and the cell line abbreviation table.\

\ \

Methods

\

\ Peaks of transcription factor occupancy ("optimal peak set") from ENCODE ChIP-seq datasets\ were clustered using the UCSC hgBedsToBedExps tool. \ Scores were assigned to peaks by multiplying the input signal values by a normalization\ factor calculated as the ratio of the maximum score value (1000) to the signal value at one\ standard deviation from the mean, with values exceeding 1000 capped at 1000. This has the\ effect of distributing scores up to mean plus one 1 standard deviation across the score range,\ but assigning all above to the maximum score.\ The cluster score is the highest score for any peak contributing to the cluster.

\ \

Data Access

\

\ The raw data for the ENCODE3 TF Clusters track can be accessed from the\ \ Table Browser or combined with other datasets through the \ Data Integrator. This data is stored internally as a BED5+3 MySQL table with additional \ metadata tables. For automated analysis and download, the \ encRegTfbsClusteredWithCells.hg38.bed.gz track data file can be downloaded from \ our \ downloads server, which has 5 fields of BED data followed by a comma-separated list of cell types. \ The data can also be queried using the \ JSON API or the\ Public SQL server.

\ \

Credits

\

\ Thanks to the ENCODE Consortium, the ENCODE ChIP-seq production laboratories, and the\ ENCODE Data Coordination Center for generating and processing the TF ChIP-seq datasets used here.\ The ENCODE accession numbers of the constituent datasets are available from the peak details page.\ Special thanks to Henry Pratt, Jill Moore, Michael Purcaro, and Zhiping Weng, PI, at the \ ENCODE Data Analysis Center\ (ZLab at UMass Medical Center) for providing the peak datasets, metadata,\ and guidance developing this track. Please check the\ ZLab ENCODE Public Hubs\ for the most updated data.\

\

\ The integrative view presented here was developed by Jim Kent at UCSC.

\ \

References

\ \

ENCODE Project Consortium.\ \ A user's guide to the encyclopedia of DNA elements (ENCODE).\ PLoS Biol. 2011 Apr;9(4):e1001046. PMID: 21526222; PMCID: PMC3079585\

\ \

ENCODE Project Consortium.\ \ An integrated encyclopedia of DNA elements in the human genome.\ Nature. 2012 Sep 6;489(7414):57-74. PMID: 22955616; PMCID: PMC3439153\

\

\ Sloan CA, Chan ET, Davidson JM, Malladi VS, Strattan JS, Hitz BC, Gabdank I, Narayanan AK, Ho M, Lee\ BT et al.\ \ ENCODE data at the ENCODE portal.\ Nucleic Acids Res. 2016 Jan 4;44(D1):D726-32.\ PMID: 26527727; PMC: PMC4702836\

\

\ Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, Cheng C, Mu XJ, Khurana E, Rozowsky J,\ Alexander R et al.\ \ Architecture of the human regulatory network derived from ENCODE data.\ Nature. 2012 Sep 6;489(7414):91-100.\ PMID: 22955619\

\

\ Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, Greven MC, Pierce BG, Dong X, Kundaje A, Cheng Y\ et al.\ \ Sequence features and chromatin structure around the genomic regions bound by 119 human\ transcription factors.\ Genome Res. 2012 Sep;22(9):1798-812.\ PMID: 22955990; PMC: PMC3431495\

\

\ Wang J, Zhuang J, Iyer S, Lin XY, Greven MC, Kim BH, Moore J, Pierce BG, Dong X, Virgil D et\ al.\ \ Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE\ consortium.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D171-6.\ PMID: 23203885; PMC: PMC3531197\

\ \

Data Use Policy

\

Users may freely download, analyze and publish results based on any ENCODE data without \ restrictions.\ Researchers using unpublished ENCODE data are encouraged to contact the data producers to discuss possible coordinated publications; however, this is optional.

\ Users of ENCODE datasets are requested to cite the ENCODE Consortium and ENCODE\ production laboratory(s) that generated the datasets used, as described in\ Citing ENCODE.

\ regulation 1 dataVersion ENCODE 3 Nov 2018\ filterBy name:factor=AFF1,AGO1,AGO2,ARHGAP35,ARID1B,ARID2,ARID3A,ARNT,ASH1L,ASH2L,ATF2,ATF3,ATF4,ATF7,ATM,BACH1,BATF,BCL11A,BCL3,BCOR,BHLHE40,BMI1,BRCA1,BRD4,BRD9,C11orf30,CBFA2T2,CBFA2T3,CBFB,CBX1,CBX2,CBX3,CBX5,CBX8,CC2D1A,CCAR2,CDC5L,CEBPB,CHAMP1,CHD1,CHD4,CHD7,CLOCK,COPS2,CREB1,CREB3L1,CREBBP,CREM,CTBP1,CTCF,CUX1,DACH1,DEAF1,DNMT1,DPF2,E2F1,E2F4,E2F6,E2F7,E2F8,E4F1,EBF1,EED,EGR1,EHMT2,ELF1,ELF4,ELK1,EP300,EP400,ESR1,ESRRA,ETS1,ETV4,ETV6,EWSR1,EZH2,FIP1L1,FOS,FOSL1,FOSL2,FOXA1,FOXA2,FOXK2,FOXM1,FOXP1,FUS,GABPA,GABPB1,GATA1,GATA2,GATA3,GATA4,GATAD2A,GATAD2B,GMEB1,HCFC1,HDAC1,HDAC2,HDAC3,HDAC6,HES1,HMBOX1,HNF1A,HNF4A,HNF4G,HNRNPH1,HNRNPK,HNRNPL,HNRNPLL,HNRNPUL1,HSF1,IKZF1,IKZF2,IRF1,IRF2,IRF3,IRF4,IRF5,JUN,JUNB,JUND,KAT2A,KAT2B,KAT8,KDM1A,KDM4A,KDM4B,KDM5A,KDM5B,KLF16,KLF5,L3MBTL2,LCORL,LEF1,MAFF,MAFK,MAX,MBD2,MCM2,MCM3,MCM5,MCM7,MEF2A,MEF2B,MEF2C,MEIS2,MGA,MIER1,MITF,MLLT1,MNT,MTA1,MTA2,MTA3,MXI1,MYB,MYBL2,MYC,MYNN,NANOG,NBN,NCOA1,NCOA2,NCOA3,NCOA4,NCOA6,NCOR1,NEUROD1,NFATC1,NFATC3,NFE2,NFE2L2,NFIB,NFIC,NFRKB,NFXL1,NFYA,NFYB,NR0B1,NR2C1,NR2C2,NR2F1,NR2F2,NR2F6,NR3C1,NRF1,NUFIP1,PAX5,PAX8,PBX3,PCBP1,PCBP2,PHB2,PHF20,PHF21A,PHF8,PKNOX1,PLRG1,PML,POLR2A,POLR2G,POU2F2,PRDM10,PRPF4,PTBP1,PYGO2,RAD21,RAD51,RB1,RBBP5,RBFOX2,RBM14,RBM15,RBM17,RBM22,RBM25,RBM34,RBM39,RCOR1,RELB,REST,RFX1,RFX5,RLF,RNF2,RUNX1,RUNX3,RXRA,SAFB,SAFB2,SAP30,SETDB1,SIN3A,SIN3B,SIRT6,SIX4,SIX5,SKI,SKIL,SMAD1,SMAD2,SMAD5,SMARCA4,SMARCA5,SMARCB1,SMARCC2,SMARCE1,SMC3,SNRNP70,SOX13,SOX6,SP1,SPI1,SREBF1,SREBF2,SRF,SRSF4,SRSF7,SRSF9,STAT1,STAT2,STAT3,STAT5A,SUPT20H,SUZ12,TAF1,TAF15,TAF7,TAF9B,TAL1,TBL1XR1,TBP,TBX21,TBX3,TCF12,TCF7,TCF7L2,TEAD4,TFAP4,THAP1,THRA,TRIM22,TRIM24,TRIM28,TRIP13,U2AF1,U2AF2,UBTF,USF1,USF2,WHSC1,WRNIP1,XRCC3,XRCC5,YY1,ZBED1,ZBTB1,ZBTB11,ZBTB2,ZBTB33,ZBTB40,ZBTB5,ZBTB7A,ZBTB7B,ZBTB8A,ZEB1,ZEB2,ZFP91,ZFX,ZHX1,ZHX2,ZKSCAN1,ZMIZ1,ZMYM3,ZNF143,ZNF184,ZNF207,ZNF217,ZNF24,ZNF263,ZNF274,ZNF280A,ZNF282,ZNF316,ZNF318,ZNF384,ZNF407,ZNF444,ZNF507,ZNF512B,ZNF574,ZNF579,ZNF592,ZNF639,ZNF687,ZNF8,ZNF830,ZSCAN29,ZZZ3\ idInUrlSql select value from factorbookGeneAlias where name='%s'\ inputTableFieldDisplay cellType factor experiment lab\ inputTableFieldUrls experiment="https://www.encodeproject.org/experiments/$$"\ inputTrackTable encRegTfbsClusteredInputs\ longLabel Transcription Factor ChIP-seq Clusters (340 factors, 129 cell types) from ENCODE 3\ maxWindowToDraw 10000000\ parent wgEncodeReg\ priority 1.90\ shortLabel TF Clusters\ sourceTable encRegTfbsClusteredSources\ track encRegTfbsClustered\ type factorSource\ url http://www.factorbook.org/mediawiki/index.php/$$\ urlLabel Factorbook Link:\ useScore 1\ visibility hide\ encTfChipPk TF ChIP narrowPeak Transcription Factor ChIP-seq Peaks (340 factors in 129 cell types) from ENCODE 3 0 1.91 0 0 0 127 127 127 0 0 0

Description

\

\ This track represents a comprehensive set of human transcription factor binding sites based on \ ChIP-seq experiments generated by production groups in the ENCODE Consortium between \ February 2011 and November 2018.

\

\ Transcription factors (TFs) are proteins that bind to DNA and interact with RNA polymerases to\ regulate gene expression. Some TFs contain a DNA binding domain and can bind directly to \ specific short DNA sequences ('motifs');\ others bind to DNA indirectly through interactions with TFs containing a DNA binding domain.\ High-throughput antibody capture and sequencing methods (e.g. chromatin immunoprecipitation\ followed by sequencing, or 'ChIP-seq') can be used to identify regions of\ TF binding genome-wide. These regions are commonly called ChIP-seq peaks.

\ \ The related\ Transcription Factor ChIP-seq Clusters tracks \ (hg19,\ hg38)\ provide summary views of this data.\

\

\ \

Display and File Conventions and Configuration

\

\ The display for this track shows site location with the point-source of the peak marked with a \ colored vertical bar and the level of enrichment at the site indicated by the darkness of the item.\ The subtracks are colored by UCSC ENCODE 2 cell type color conventions on the hg19 assembly, \ and by similarity of cell types in DNaseI hypersensitivity assays (as in the\ DNase Signal)\ track in the hg38 assembly.

\ \ The display can be filtered to higher valued items, using the \ Score range: configuration item.\ The score values were computed at UCSC based on signal values assigned by the ENCODE\ pipeline.\ The input signal values were multiplied by a normalization factor calculated as the ratio\ of the maximum score value (1000) to the signal value at 1 standard deviation from the mean,\ with values exceeding 1000 capped at 1000. This has the effect of distributing scores up to \ mean + 1std across the score range, but assigning all above to the maximum score.\ \

Methods

\

\ The ChIP-seq peaks in this track were\ generated by the\ the ENCODE Transcription Factor ChIP-seq Processing Pipeline.\ Methods documentation and full metadata for each track can be found at the \ ENCODE project portal, using\ The ENCODE file accession (ENCFF*) listed in the track label.\

\ \

Credits

\

\ Thanks to the ENCODE Consortium, the ENCODE ChIP-seq production laboratories, and the\ ENCODE Data Coordination Center for generating and processing the datasets used here.\ Special thanks to Henry Pratt, Jill Moore, Michael Purcaro, and Zhiping Weng, PI, at the \ ENCODE Data Analysis Center\ (ZLab at UMass Medical Center) for providing the peak datasets, metadata,\ and guidance developing this track. Please check the\ ZLab ENCODE Public Hubs\ for the most updated data.\

\ \

References

\ \

ENCODE Project Consortium.\ \ A user's guide to the encyclopedia of DNA elements (ENCODE).\ PLoS Biol. 2011 Apr;9(4):e1001046. PMID: 21526222; PMCID: PMC3079585\

\ \

ENCODE Project Consortium.\ \ An integrated encyclopedia of DNA elements in the human genome.\ Nature. 2012 Sep 6;489(7414):57-74. PMID: 22955616; PMCID: PMC3439153\

\

\ Sloan CA, Chan ET, Davidson JM, Malladi VS, Strattan JS, Hitz BC, Gabdank I, Narayanan AK, Ho M, Lee\ BT et al.\ \ ENCODE data at the ENCODE portal.\ Nucleic Acids Res. 2016 Jan 4;44(D1):D726-32.\ PMID: 26527727; PMC: PMC4702836\

\

\ Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, Cheng C, Mu XJ, Khurana E, Rozowsky J,\ Alexander R et al.\ \ Architecture of the human regulatory network derived from ENCODE data.\ Nature. 2012 Sep 6;489(7414):91-100.\ PMID: 22955619\

\

\ Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, Greven MC, Pierce BG, Dong X, Kundaje A, Cheng Y\ et al.\ \ Sequence features and chromatin structure around the genomic regions bound by 119 human\ transcription factors.\ Genome Res. 2012 Sep;22(9):1798-812.\ PMID: 22955990; PMC: PMC3431495\

\

\ Wang J, Zhuang J, Iyer S, Lin XY, Greven MC, Kim BH, Moore J, Pierce BG, Dong X, Virgil D et\ al.\ \ Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE\ consortium.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D171-6.\ PMID: 23203885; PMC: PMC3531197\

\ \

Data Use Policy

\

Users may freely download, analyze and publish results based on any ENCODE data without \ restrictions.\ Researchers using unpublished ENCODE data are encouraged to contact the data producers to discuss possible coordinated publications; however, this is optional.

\

\ Users of ENCODE datasets are requested to cite the ENCODE Consortium and ENCODE \ production laboratory(s) that generated the datasets used, as described in\ Citing ENCODE.

\ \ regulation 1 compositeTrack on\ darkerLabels on\ dataVersion ENCODE 3 Nov 2018\ dimensions dimX=cellType dimY=factor\ dragAndDrop subTracks\ group regulation\ longLabel Transcription Factor ChIP-seq Peaks (340 factors in 129 cell types) from ENCODE 3\ parent wgEncodeReg\ priority 1.91\ scoreFilter 0\ scoreFilterLimits 0:1000\ shortLabel TF ChIP\ sortOrder cellType=+ factor=+\ subGroup1 cellType Cell_Type X22Rv1=22Rv1 A549=A549 A673=A673 AG04449=AG04449 AG04450=AG04450 AG09309=AG09309 AG09319=AG09319 AG10803=AG10803 BE2C=BE2C BJ=BJ B_cell=B_cell C4-2B=C4-2B CD14-positive_monocyte=CD14-positive_monocyte Caco-2=Caco-2 DOHH2=DOHH2 GM06990=GM06990 GM08714=GM08714 GM10266=GM10266 GM12864=GM12864 GM12865=GM12865 GM12873=GM12873 GM12874=GM12874 GM12878=GM12878 GM12891=GM12891 GM12892=GM12892 GM13977=GM13977 GM20000=GM20000 GM23248=GM23248 GM23338=GM23338 H1-hESC=H1-hESC H54=H54 HCT116=HCT116 HEK293=HEK293 HEK293T=HEK293T HFF-Myc=HFF-Myc HL-60=HL-60 HeLa-S3=HeLa-S3 HepG2=HepG2 IMR-90=IMR-90 Ishikawa=Ishikawa K562=K562 KMS-11=KMS-11 LNCAP=LNCAP LNCaP_clone_FGC=LNCaP_clone_FGC Loucy=Loucy MCF-7=MCF-7 MCF_10A=MCF_10A MM_1S=MM.1S NB4=NB4 NCI-H929=NCI-H929 NT2_D1=NT2/D1 OCI-LY1=OCI-LY1 OCI-LY3=OCI-LY3 OCI-LY7=OCI-LY7 PC-3=PC-3 PC-9=PC-9 PFSK-1=PFSK-1 Panc1=Panc1 Parathyroid_adenoma=Parathyroid_adenoma Peyers_patch=Peyer's_patch RWPE1=RWPE1 RWPE2=RWPE2 Raji=Raji SH-SY5Y=SH-SY5Y SK-N-MC=SK-N-MC SK-N-SH=SK-N-SH SU-DHL-6=SU-DHL-6 T47D=T47D VCaP=VCaP WERI-Rb-1=WERI-Rb-1 WI38=WI38 adrenal_gland=adrenal_gland ascending_aorta=ascending_aorta astrocyte=astrocyte astrocyte_of_the_cerebellum=astrocyte_of_the_cerebellum astrocyte_of_the_spinal_cord=astrocyte_of_the_spinal_cord bipolar_neuron=bipolar_neuron body_of_pancreas=body_of_pancreas brain_microvascular_endothelial_cell=brain_microvascular_endothelial_cell breast_epithelium=breast_epithelium cardiac_fibroblast=cardiac_fibroblast cardiac_muscle_cell=cardiac_muscle_cell choroid_plexus_epithelial_cell=choroid_plexus_epithelial_cell endothelial_cell_of_umbilical_vein=endothelial_cell_of_umbilical_vein epithelial_cell_of_esophagus=epithelial_cell_of_esophagus epithelial_cell_of_prostate=epithelial_cell_of_prostate erythroblast=erythroblast esophagus_muscularis_mucosa=esophagus_muscularis_mucosa esophagus_squamous_epithelium=esophagus_squamous_epithelium fibroblast_of_lung=fibroblast_of_lung fibroblast_of_mammary_gland=fibroblast_of_mammary_gland fibroblast_of_pulmonary_artery=fibroblast_of_pulmonary_artery fibroblast_of_the_aortic_adventitia=fibroblast_of_the_aortic_adventitia fibroblast_of_villous_mesenchyme=fibroblast_of_villous_mesenchyme foreskin_fibroblast=foreskin_fibroblast foreskin_keratinocyte=foreskin_keratinocyte gastrocnemius_medialis=gastrocnemius_medialis gastroesophageal_sphincter=gastroesophageal_sphincter heart_left_ventricle=heart_left_ventricle hepatocyte=hepatocyte keratinocyte=keratinocyte kidney_epithelial_cell=kidney_epithelial_cell liver=liver lower_leg_skin=lower_leg_skin mammary_epithelial_cell=mammary_epithelial_cell medulloblastoma=medulloblastoma myotube=myotube neural_cell=neural_cell neural_progenitor_cell=neural_progenitor_cell neutrophil=neutrophil omental_fat_pad=omental_fat_pad ovary=ovary prostate_gland=prostate_gland retinal_pigment_epithelial_cell=retinal_pigment_epithelial_cell right_lobe_of_liver=right_lobe_of_liver sigmoid_colon=sigmoid_colon smooth_muscle_cell=smooth_muscle_cell spleen=spleen stomach=stomach subcutaneous_adipose_tissue=subcutaneous_adipose_tissue suprapubic_skin=suprapubic_skin testis=testis thyroid_gland=thyroid_gland tibial_artery=tibial_artery tibial_nerve=tibial_nerve transverse_colon=transverse_colon upper_lobe_of_left_lung=upper_lobe_of_left_lung uterus=uterus vagina=vagina\ subGroup2 factor Factor AFF1=AFF1 AGO1=AGO1 AGO2=AGO2 ARHGAP35=ARHGAP35 ARID1B=ARID1B ARID2=ARID2 ARID3A=ARID3A ARNT=ARNT ASH1L=ASH1L ASH2L=ASH2L ATF2=ATF2 ATF3=ATF3 ATF4=ATF4 ATF7=ATF7 ATM=ATM BACH1=BACH1 BATF=BATF BCL11A=BCL11A BCL3=BCL3 BCOR=BCOR BHLHE40=BHLHE40 BMI1=BMI1 BRCA1=BRCA1 BRD4=BRD4 BRD9=BRD9 C11orf30=C11orf30 CBFA2T2=CBFA2T2 CBFA2T3=CBFA2T3 CBFB=CBFB CBX1=CBX1 CBX2=CBX2 CBX3=CBX3 CBX5=CBX5 CBX8=CBX8 CC2D1A=CC2D1A CCAR2=CCAR2 CDC5L=CDC5L CEBPB=CEBPB CHAMP1=CHAMP1 CHD1=CHD1 CHD4=CHD4 CHD7=CHD7 CLOCK=CLOCK COPS2=COPS2 CREB1=CREB1 CREB3L1=CREB3L1 CREBBP=CREBBP CREM=CREM CTBP1=CTBP1 CTCF=CTCF CUX1=CUX1 DACH1=DACH1 DEAF1=DEAF1 DNMT1=DNMT1 DPF2=DPF2 E2F1=E2F1 E2F4=E2F4 E2F6=E2F6 E2F7=E2F7 E2F8=E2F8 E4F1=E4F1 EBF1=EBF1 EED=EED EGR1=EGR1 EHMT2=EHMT2 ELF1=ELF1 ELF4=ELF4 ELK1=ELK1 EP300=EP300 EP400=EP400 ESR1=ESR1 ESRRA=ESRRA ETS1=ETS1 ETV4=ETV4 ETV6=ETV6 EWSR1=EWSR1 EZH2=EZH2 FIP1L1=FIP1L1 FOS=FOS FOSL1=FOSL1 FOSL2=FOSL2 FOXA1=FOXA1 FOXA2=FOXA2 FOXK2=FOXK2 FOXM1=FOXM1 FOXP1=FOXP1 FUS=FUS GABPA=GABPA GABPB1=GABPB1 GATA1=GATA1 GATA2=GATA2 GATA3=GATA3 GATA4=GATA4 GATAD2A=GATAD2A GATAD2B=GATAD2B GMEB1=GMEB1 HCFC1=HCFC1 HDAC1=HDAC1 HDAC2=HDAC2 HDAC3=HDAC3 HDAC6=HDAC6 HES1=HES1 HMBOX1=HMBOX1 HNF1A=HNF1A HNF4A=HNF4A HNF4G=HNF4G HNRNPH1=HNRNPH1 HNRNPK=HNRNPK HNRNPL=HNRNPL HNRNPLL=HNRNPLL HNRNPUL1=HNRNPUL1 HSF1=HSF1 IKZF1=IKZF1 IKZF2=IKZF2 IRF1=IRF1 IRF2=IRF2 IRF3=IRF3 IRF4=IRF4 IRF5=IRF5 JUN=JUN JUNB=JUNB JUND=JUND KAT2A=KAT2A KAT2B=KAT2B KAT8=KAT8 KDM1A=KDM1A KDM4A=KDM4A KDM4B=KDM4B KDM5A=KDM5A KDM5B=KDM5B KLF16=KLF16 KLF5=KLF5 L3MBTL2=L3MBTL2 LCORL=LCORL LEF1=LEF1 MAFF=MAFF MAFK=MAFK MAX=MAX MBD2=MBD2 MCM2=MCM2 MCM3=MCM3 MCM5=MCM5 MCM7=MCM7 MEF2A=MEF2A MEF2B=MEF2B MEF2C=MEF2C MEIS2=MEIS2 MGA=MGA MIER1=MIER1 MITF=MITF MLLT1=MLLT1 MNT=MNT MTA1=MTA1 MTA2=MTA2 MTA3=MTA3 MXI1=MXI1 MYB=MYB MYBL2=MYBL2 MYC=MYC MYNN=MYNN NANOG=NANOG NBN=NBN NCOA1=NCOA1 NCOA2=NCOA2 NCOA3=NCOA3 NCOA4=NCOA4 NCOA6=NCOA6 NCOR1=NCOR1 NEUROD1=NEUROD1 NFATC1=NFATC1 NFATC3=NFATC3 NFE2=NFE2 NFE2L2=NFE2L2 NFIB=NFIB NFIC=NFIC NFRKB=NFRKB NFXL1=NFXL1 NFYA=NFYA NFYB=NFYB NR0B1=NR0B1 NR2C1=NR2C1 NR2C2=NR2C2 NR2F1=NR2F1 NR2F2=NR2F2 NR2F6=NR2F6 NR3C1=NR3C1 NRF1=NRF1 NUFIP1=NUFIP1 PAX5=PAX5 PAX8=PAX8 PBX3=PBX3 PCBP1=PCBP1 PCBP2=PCBP2 PHB2=PHB2 PHF20=PHF20 PHF21A=PHF21A PHF8=PHF8 PKNOX1=PKNOX1 PLRG1=PLRG1 PML=PML POLR2A=POLR2A POLR2G=POLR2G POU2F2=POU2F2 PRDM10=PRDM10 PRPF4=PRPF4 PTBP1=PTBP1 PYGO2=PYGO2 RAD21=RAD21 RAD51=RAD51 RB1=RB1 RBBP5=RBBP5 RBFOX2=RBFOX2 RBM14=RBM14 RBM15=RBM15 RBM17=RBM17 RBM22=RBM22 RBM25=RBM25 RBM34=RBM34 RBM39=RBM39 RCOR1=RCOR1 RELB=RELB REST=REST RFX1=RFX1 RFX5=RFX5 RLF=RLF RNF2=RNF2 RUNX1=RUNX1 RUNX3=RUNX3 RXRA=RXRA SAFB=SAFB SAFB2=SAFB2 SAP30=SAP30 SETDB1=SETDB1 SIN3A=SIN3A SIN3B=SIN3B SIRT6=SIRT6 SIX4=SIX4 SIX5=SIX5 SKI=SKI SKIL=SKIL SMAD1=SMAD1 SMAD2=SMAD2 SMAD5=SMAD5 SMARCA4=SMARCA4 SMARCA5=SMARCA5 SMARCB1=SMARCB1 SMARCC2=SMARCC2 SMARCE1=SMARCE1 SMC3=SMC3 SNRNP70=SNRNP70 SOX13=SOX13 SOX6=SOX6 SP1=SP1 SPI1=SPI1 SREBF1=SREBF1 SREBF2=SREBF2 SRF=SRF SRSF4=SRSF4 SRSF7=SRSF7 SRSF9=SRSF9 STAT1=STAT1 STAT2=STAT2 STAT3=STAT3 STAT5A=STAT5A SUPT20H=SUPT20H SUZ12=SUZ12 TAF1=TAF1 TAF15=TAF15 TAF7=TAF7 TAF9B=TAF9B TAL1=TAL1 TBL1XR1=TBL1XR1 TBP=TBP TBX21=TBX21 TBX3=TBX3 TCF12=TCF12 TCF7=TCF7 TCF7L2=TCF7L2 TEAD4=TEAD4 TFAP4=TFAP4 THAP1=THAP1 THRA=THRA TRIM22=TRIM22 TRIM24=TRIM24 TRIM28=TRIM28 TRIP13=TRIP13 U2AF1=U2AF1 U2AF2=U2AF2 UBTF=UBTF USF1=USF1 USF2=USF2 WHSC1=WHSC1 WRNIP1=WRNIP1 XRCC3=XRCC3 XRCC5=XRCC5 YY1=YY1 ZBED1=ZBED1 ZBTB1=ZBTB1 ZBTB11=ZBTB11 ZBTB2=ZBTB2 ZBTB33=ZBTB33 ZBTB40=ZBTB40 ZBTB5=ZBTB5 ZBTB7A=ZBTB7A ZBTB7B=ZBTB7B ZBTB8A=ZBTB8A ZEB1=ZEB1 ZEB2=ZEB2 ZFP91=ZFP91 ZFX=ZFX ZHX1=ZHX1 ZHX2=ZHX2 ZKSCAN1=ZKSCAN1 ZMIZ1=ZMIZ1 ZMYM3=ZMYM3 ZNF143=ZNF143 ZNF184=ZNF184 ZNF207=ZNF207 ZNF217=ZNF217 ZNF24=ZNF24 ZNF263=ZNF263 ZNF274=ZNF274 ZNF280A=ZNF280A ZNF282=ZNF282 ZNF316=ZNF316 ZNF318=ZNF318 ZNF384=ZNF384 ZNF407=ZNF407 ZNF444=ZNF444 ZNF507=ZNF507 ZNF512B=ZNF512B ZNF574=ZNF574 ZNF579=ZNF579 ZNF592=ZNF592 ZNF639=ZNF639 ZNF687=ZNF687 ZNF8=ZNF8 ZNF830=ZNF830 ZSCAN29=ZSCAN29 ZZZ3=ZZZ3\ track encTfChipPk\ type narrowPeak\ visibility hide\ netMonDom5 Opossum Net netAlign monDom5 chainMonDom5 Opossum (Oct. 2006 (Broad/monDom5)) Alignment Net 1 2 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Opossum (Oct. 2006 (Broad/monDom5)) Alignment Net\ otherDb monDom5\ parent vertebrateChainNetViewnet on\ shortLabel Opossum Net\ subGroups view=net species=s003 clade=c00\ track netMonDom5\ type netAlign monDom5 chainMonDom5\ netPanTro6 Chimp Net netAlign panTro6 chainPanTro6 Chimp (Jan. 2018 (Clint_PTRv2/panTro6)) Alignment Net 1 2 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Chimp (Jan. 2018 (Clint_PTRv2/panTro6)) Alignment Net\ otherDb panTro6\ parent primateChainNetViewnet off\ shortLabel Chimp Net\ subGroups view=net species=s0025 clade=c00\ track netPanTro6\ type netAlign panTro6 chainPanTro6\ netCriGriChoV2 Chinese hamster Net netAlign criGriChoV2 chainCriGriChoV2 Chinese hamster (Jun. 2017 (CHOK1S_HZDv1/criGriChoV2)) Alignment Net 1 2 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Chinese hamster (Jun. 2017 (CHOK1S_HZDv1/criGriChoV2)) Alignment Net\ otherDb criGriChoV2\ parent placentalChainNetViewnet off\ shortLabel Chinese hamster Net\ subGroups view=net species=s004b clade=c00\ track netCriGriChoV2\ type netAlign criGriChoV2 chainCriGriChoV2\ encTfChipPkENCFF093ZAB A549 BCL3 narrowPeak Transcription Factor ChIP-seq Peaks of BCL3 in A549 from ENCODE 3 (ENCFF093ZAB) 0 2 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of BCL3 in A549 from ENCODE 3 (ENCFF093ZAB)\ parent encTfChipPk off\ shortLabel A549 BCL3\ subGroups cellType=A549 factor=BCL3\ track encTfChipPkENCFF093ZAB\ wgEncodeRegDnaseUwA549Peak A549 Pk narrowPeak A549 lung adenocarcinoma cell line DNaseI Peaks from ENCODE 1 2 254 93 85 254 174 170 1 0 0 regulation 1 color 254,93,85\ longLabel A549 lung adenocarcinoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel A549 Pk\ subGroups view=a_Peaks cellType=A549 treatment=n_a tissue=lung cancer=cancer\ track wgEncodeRegDnaseUwA549Peak\ wgEncodeRegDnaseUwA549Wig A549 Sg bigWig 0 30091.1 A549 lung adenocarcinoma cell line DNaseI Signal from ENCODE 0 2 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel A549 lung adenocarcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.00887\ shortLabel A549 Sg\ subGroups cellType=A549 treatment=n_a tissue=lung cancer=cancer\ table wgEncodeRegDnaseUwA549Signal\ track wgEncodeRegDnaseUwA549Wig\ type bigWig 0 30091.1\ cloneEndABC11 ABC11 bed 12 Agencourt fosmid library 11 0 2 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 11\ parent cloneEndSuper off\ priority 2\ shortLabel ABC11\ subGroups source=agencourt\ track cloneEndABC11\ type bed 12\ visibility hide\ ACC ACC bigLolly 12 + Adrenocortical carcinoma 0 2 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/ACC.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Adrenocortical carcinoma\ parent gdcCancer off\ priority 2\ shortLabel ACC\ track ACC\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ gtexCovAdiposeVisceralOmentum Adip Visc Om bigWig Adipose Visceral Omentum - GTEX-14BMU-0626-SM-73KZ6 0 2 238 154 0 246 204 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-14BMU-0626-SM-73KZ6.Adipose_Visceral_Omentum.RNAseq.bw\ color 238,154,0\ longLabel Adipose Visceral Omentum - GTEX-14BMU-0626-SM-73KZ6\ parent gtexCov\ shortLabel Adip Visc Om\ track gtexCovAdiposeVisceralOmentum\ lincRNAsCTAdrenal Adrenal bed 5 + lincRNAs from adrenal 1 2 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from adrenal\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Adrenal\ subGroups view=lincRNAsRefseqExp tissueType=adrenal\ track lincRNAsCTAdrenal\ genetiSureCytoCgh4x180 Agilent GenetiSure Cyto CGH 4x180K bigBed 4 Agilent GenetiSure Cyto CGH 4x180K 085589 20200302 3 2 0 0 0 127 127 127 0 0 0 varRep 1 bigDataUrl /gbdb/hg38/snpCnvArrays/agilent/hg38.GenetiSure_Cyto_CGH_Microarray_4x180K_085589_D_BED_20200302.bb\ longLabel Agilent GenetiSure Cyto CGH 4x180K 085589 20200302\ parent genotypeArrays on\ priority 2\ shortLabel Agilent GenetiSure Cyto CGH 4x180K\ track genetiSureCytoCgh4x180\ type bigBed 4\ visibility pack\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep1LK1_CNhs13339_tpm_rev AorticSmsToFgf2_00hr00minBr1- bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)_CNhs13339_12642-134G5_reverse 1 2 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12642-134G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep1%20%28LK1%29.CNhs13339.12642-134G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)_CNhs13339_12642-134G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12642-134G5 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToFgf2_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep1LK1_CNhs13339_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12642-134G5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep1LK1_CNhs13339_ctss_rev AorticSmsToFgf2_00hr00minBr1- bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)_CNhs13339_12642-134G5_reverse 0 2 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12642-134G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep1%20%28LK1%29.CNhs13339.12642-134G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)_CNhs13339_12642-134G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12642-134G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep1LK1_CNhs13339_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12642-134G5\ urlLabel FANTOM5 Details:\ cons241wayViewphyloP Basewise Conservation (phyloP) bed 4 Cactus Alignment & Conservation of Zoonomia Placental Mammals (241 Species) 2 2 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Cactus Alignment & Conservation of Zoonomia Placental Mammals (241 Species)\ parent cons241way\ shortLabel Basewise Conservation (phyloP)\ track cons241wayViewphyloP\ view phyloP\ viewLimits -20.0:9.869\ viewLimitsMax -20:0.869\ visibility full\ iscaBenign Benign gvf ClinGen CNVs: Benign 3 2 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/?term=$$ phenDis 1 longLabel ClinGen CNVs: Benign\ parent iscaViewDetail off\ shortLabel Benign\ subGroups view=cnv class=ben level=sub\ track iscaBenign\ bismap36Pos Bismap S36 + bigBed 6 Single-read mappability with 36-mers after bisulfite conversion (forward strand) 0 2 240 70 80 247 162 167 0 0 0 map 1 bigDataUrl /gbdb/hg38/hoffmanMappability/k36.C2T-Converted.bb\ color 240,70,80\ longLabel Single-read mappability with 36-mers after bisulfite conversion (forward strand)\ parent bismapBigBed off\ priority 2\ shortLabel Bismap S36 +\ subGroups view=SR\ track bismap36Pos\ visibility hide\ cons241way Cactus 241-way bed 4 Cactus Alignment & Conservation of Zoonomia Placental Mammals (241 Species) 0 2 0 0 0 127 127 127 0 0 0

\ Downloads for data in this track are available:\

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  • \ Cactus alignments (MAF format), and phylogenetic trees, and PhyloP conservation (WIG and bigWig format)\
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Description

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Warning: Unlike other alignment tracks on the genome browser, this one does not show\ insertions in the query genomes. Also, all other alignment tracks show one query\ genome sequence for target target genome sequence, but in this track, each\ target genome sequence can be aligned to multiple query genome sequences.\ Only the first sequence is shown on the genome browser itself, the others are shown on the details page,\ when one clicks on the alignment. If you are interested in this track and want\ these shortcomings to be fixed, please contact us.\

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\ This track shows multiple alignments of 241 vertebrate\ species and measurements of evolutionary conservation\ from the Zoonomia Project.\

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\ The multiple alignments were generated using the\ Cactus comparative genomics alignment system.\ Cactus produces reference-free, whole-genome multiple alignments.\

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\ The base-wise conservation scores are computed using phyloP from the\ PHAST package, for all species.\ This version was prepared by Michael Dong (Uppsala U) with an improved neutral\ model incorporating better versions of ancestral repeats.\

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\ For genome assemblies not available in the genome browser, there are\ alternative assembly hub genome browsers. Missing sequence in any assembly is\ highlighted in the track display by regions of yellow when zoomed out and by\ Ns when displayed at base level (see Gap Annotation, below).

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\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
countcommon
name		CLADEgroupscientific
name		sequencing
source		NCBI
assembly		species
status
1Cape golden moleAFROSORICIDAChrysochloridaeChrysochloris asiatica1. ZoonomiaGCA_004027935.1LC
2Small madagascar hedgehogAFROSORICIDATenrecidaeEchinops telfairi2. Existing assemblyGCF_000313985.1LC
3Talazac's shrew tenrecAFROSORICIDATenrecidaeMicrogale talazaci1. ZoonomiaGCA_004026705.1LC
4CheetahCARNIVORAFelidaeAcinonyx jubatus2. Existing assemblyGCF_001443585.1CR
5Giant pandaCARNIVORAUrsidaeAiluropoda melanoleuca2. Existing assemblyGCA_002007445.1VU
6Lesser pandaCARNIVORAAiluridaeAilurus fulgens2. Existing assemblyGCA_002007465.1EN
7Domestic dogCARNIVORACanidaeCanis lupus familiaris2. Existing assemblyGCF_000002285.3LC
8Domestic dog (village dog)CARNIVORACanidaeCanis lupus familiaris1. ZoonomiaGCA_004027395.1LC
9FossaCARNIVORAEupleridaeCryptoprocta ferox1. ZoonomiaGCA_004023885.1VU
10Sea otterCARNIVORAMustelidaeEnhydra lutris2. Existing assemblyGCF_002288905.1EN
11Domestic catCARNIVORAFelidaeFelis catus2. Existing assemblyGCF_000181335.2LC
12Black-footed catCARNIVORAFelidaeFelis nigripes1. ZoonomiaGCA_004023925.1VU
13Dwarf mongooseCARNIVORAHerpestidaeHelogale parvula1. ZoonomiaGCA_004023845.1LC
14Striped hyenaCARNIVORAHyaenidaeHyaena hyaena1. ZoonomiaGCA_004023945.1NT
15Weddell sealCARNIVORAPhocidaeLeptonychotes weddellii2. Existing assemblyGCF_000349705.1LC
16African hunting dogCARNIVORACanidaeLycaon pictus2. Existing assemblyGCA_001887905.1EN
17Honey badgerCARNIVORAMustelidaeMellivora capensis1. ZoonomiaGCA_004024625.1LC
18Northern elephant sealCARNIVORAPhocidaeMirounga angustirostris1. ZoonomiaGCA_004023865.1LC
19South African banded mongooseCARNIVORAHerpestidaeMungos mungo1. ZoonomiaGCA_004023785.1LC
20Domestic ferretCARNIVORAMustelidaeMustela putorius2. Existing assemblyGCF_000239315.1LC
21Hawaiian monk sealCARNIVORAPhocidaeNeomonachus schauinslandi2. Existing assemblyGCA_002201575.1EN
22Pacific walrusCARNIVORAOdobenidaeOdobenus rosmarus2. Existing assemblyGCF_000321225.1DD
23JaguarCARNIVORAFelidaePanthera onca1. ZoonomiaGCA_004023805.1NT
24LeopardCARNIVORAFelidaePanthera pardus2. Existing assemblyGCA_001857705.1VU
25Amur tigerCARNIVORAFelidaePanthera tigris2. Existing assemblyGCF_000464555.1EN
26Asian palm civetCARNIVORAViverridaeParadoxurus hermaphroditus1. ZoonomiaGCA_004024585.1LC
27Giant otterCARNIVORAMustelidaePteronura brasiliensis1. ZoonomiaGCA_004024605.1EN
28PumaCARNIVORAFelidaePuma concolor2. Existing assemblyGCF_003327715.1LC
29Western spotted skunkCARNIVORAMephitidaeSpilogale gracilis1. ZoonomiaGCA_004023965.1LC
30MeerkatCARNIVORAHerpestidaeSuricata suricatta1. ZoonomiaGCA_004023905.1LC
31Polar bearCARNIVORAUrsidaeUrsus maritimus2. Existing assemblyGCF_000687225.1VU
32Arctic foxCARNIVORACanidaeVulpes lagopus1. ZoonomiaGCA_004023825.1LC
33California sea lionCARNIVORAOtariidaeZalophus californianus1. ZoonomiaGCA_004024565.1LC
34AoudadCETARTIODACTYLABovidaeAmmotragus lervia2. Existing assemblyGCA_002201775.1VU
35PronghornCETARTIODACTYLAAntilocapridaeAntilocapra americana1. ZoonomiaGCA_004027515.1LC
36Minke whaleCETARTIODACTYLABalaenopteridaeBalaenoptera acutorostrata2. Existing assemblyGCF_000493695.1LC
37Antarctic minke whaleCETARTIODACTYLABalaenopteridaeBalaenoptera bonaerensis2. Existing assemblyGCA_000978805.1DD
38HirolaCETARTIODACTYLABovidaeBeatragus hunteri1. ZoonomiaGCA_004027495.1CR
39American bisonCETARTIODACTYLABovidaeBison bison2. Existing assemblyGCF_000754665.1NT
40Zebu cattleCETARTIODACTYLABovidaeBos indicus2. Existing assemblyGCA_000247795.2LC
41Wild yakCETARTIODACTYLABovidaeBos mutus2. Existing assemblyGCF_000298355.1VU
42CattleCETARTIODACTYLABovidaeBos taurus2. Existing assemblyGCF_000003205.7LC
43Water buffaloCETARTIODACTYLABovidaeBubalus bubalis2. Existing assemblyGCF_000471725.1LC
44Bactrian camelCETARTIODACTYLACamelidaeCamelus bactrianus2. Existing assemblyGCF_000767855.1LC
45Arabian camelCETARTIODACTYLACamelidaeCamelus dromedarius2. Existing assemblyGCF_000767585.1LC
46Wild bactrian camelCETARTIODACTYLACamelidaeCamelus ferus2. Existing assemblyGCF_000311805.1CR
47Wild goatCETARTIODACTYLABovidaeCapra aegagrus2. Existing assemblyGCA_000978405.1VU
48GoatCETARTIODACTYLABovidaeCapra hircus2. Existing assemblyGCF_001704415.1LC
49Chacoan peccaryCETARTIODACTYLATayassuidaeCatagonus wagneri1. ZoonomiaGCA_004024745.1EN
50Beluga whaleCETARTIODACTYLAMonodontidaeDelphinapterus leucas2. Existing assemblyGCF_002288925.1LC
51Pere david's deerCETARTIODACTYLACervidaeElaphurus davidianus2. Existing assemblyGCA_002443075.1CR
52Grey whaleCETARTIODACTYLAEschrichtiidaeEschrichtius robustus1. ZoonomiaGCA_004363415.1LC
53North Pacific right whaleCETARTIODACTYLABalaenidaeEubalaena japonica1. ZoonomiaGCA_004363455.1EN
54GiraffeCETARTIODACTYLAGiraffidaeGiraffa tippelskirchi2. Existing assemblyGCA_001651235.1VU
55Nilgiri tahrCETARTIODACTYLABovidaeHemitragus hylocrius1. ZoonomiaGCA_004026825.1EN
56HippopotamusCETARTIODACTYLAHippopotamidaeHippopotamus amphibius1. ZoonomiaGCA_004027065.1VU
57Amazon river dolphinCETARTIODACTYLAIniidaeInia geoffrensis1. ZoonomiaGCA_004363515.1DD
58Pygmy sperm whaleCETARTIODACTYLAPhyseteridaeKogia breviceps1. ZoonomiaGCA_004363705.1DD
59Yangtze river dolphinCETARTIODACTYLAIniidaeLipotes vexillifer2. Existing assemblyGCF_000442215.1CR
60Sowerby's beaked whaleCETARTIODACTYLAZiphiidaeMesoplodon bidens1. ZoonomiaGCA_004027085.1DD
61NarwhalCETARTIODACTYLAMonodontidaeMonodon monoceros1. ZoonomiaGCA_004026685.1LC
62Siberian musk deerCETARTIODACTYLAMoschidaeMoschus moschiferus1. ZoonomiaGCA_004024705.1VU
63Yangtze finless porpoiseCETARTIODACTYLAPhocoenidaeNeophocaena asiaeorientalis2. Existing assemblyGCA_003031525.1EN
64White-tailed deerCETARTIODACTYLACervidaeOdocoileus virginianus2. Existing assemblyGCA_002102435.1LC
65OkapiCETARTIODACTYLAGiraffidaeOkapia johnstoni2. Existing assemblyGCA_001660835.1EN
66Killer whaleCETARTIODACTYLADelphinidaeOrcinus orca2. Existing assemblyGCF_000331955.2DD
67SheepCETARTIODACTYLABovidaeOvis aries2. Existing assemblyGCF_000298735.2LC
68Peninsular bighorn sheepCETARTIODACTYLABovidaeOvis canadensis cremnobates1. ZoonomiaGCA_004026945.1EN
69ChiruCETARTIODACTYLABovidaePantholops hodgsonii2. Existing assemblyGCF_000400835.1NT
70Harbor porpoiseCETARTIODACTYLAPhocoenidaePhocoena phocoena1. ZoonomiaGCA_004363495.1LC
71Indus river dolphinCETARTIODACTYLAPlatanistidaePlatanista gangetica minor1. ZoonomiaGCA_004363435.1EN
72Siberian reindeerCETARTIODACTYLACervidaeRangifer tarandus1. ZoonomiaGCA_004026565.1VU
73Russian saigaCETARTIODACTYLABovidaeSaiga tatarica tatarica1. ZoonomiaGCA_004024985.1CR
74PigCETARTIODACTYLASuidaeSus scrofa2. Existing assemblyGCF_000003025.5LC
75Java lesser chevrotainCETARTIODACTYLATragulidaeTragulus javanicus1. ZoonomiaGCA_004024965.1DD
76Bottlenose dolphinCETARTIODACTYLADelphinidaeTursiops truncatus2. Existing assemblyGCA_001922835.1LC
77AlpacaCETARTIODACTYLACamelidaeVicugna pacos2. Existing assemblyGCA_000767525.1LC
78Cuvier's beaked whaleCETARTIODACTYLAZiphiidaeZiphius cavirostris1. ZoonomiaGCA_004364475.1LC
79Tailed tailless batCHIROPTERAPhyllostomidaeAnoura caudifer1. ZoonomiaGCA_004027475.1LC
80Jamacian fruit-eating batCHIROPTERAPhyllostomidaeArtibeus jamaicensis1. ZoonomiaGCA_004027435.1LC
81Seba's short-tailed batCHIROPTERAPhyllostomidaeCarollia perspicillata1. ZoonomiaGCA_004027735.1LC
82Bumblebee batCHIROPTERACraseonycteridaeCraseonycteris thonglongyai1. ZoonomiaGCA_004027555.1VU
83Common vampire batCHIROPTERAPhyllostomidaeDesmodus rotundus2. Existing assemblyGCA_002940915.2LC
84Straw-colored fruit batCHIROPTERAPteropodidaeEidolon helvum2. Existing assemblyGCA_000465285.1NT
85Big brown batCHIROPTERAVespertilionidaeEptesicus fuscus2. Existing assemblyGCF_000308155.1LC
86Great roundleaf batCHIROPTERAHipposideridaeHipposideros armiger2. Existing assemblyGCA_001890085.1LC
87Cantor's leaf-nosed batCHIROPTERAHipposideridaeHipposideros galeritus1. ZoonomiaGCA_004027415.1LC
88Eastern red batCHIROPTERAVespertilionidaeLasiurus borealis1. ZoonomiaGCA_004026805.1LC
89Long-tongued fruit batCHIROPTERAPteropodidaeMacroglossus sobrinus1. ZoonomiaGCA_004027375.1LC
90Greater false vampire batCHIROPTERAMegadermatidaeMegaderma lyra1. ZoonomiaGCA_004026885.1LC
91Hairy big-eared batCHIROPTERAPhyllostomidaeMicronycteris hirsuta1. ZoonomiaGCA_004026765.1LC
92Natal long-fingered batCHIROPTERAVespertilionidaeMiniopterus natalensis2. Existing assemblyGCF_001595765.1LC
93Common bent-wing batCHIROPTERAVespertilionidaeMiniopterus schreibersii1. ZoonomiaGCA_004026525.1NT
94Ghost-faced batCHIROPTERAMormoopidaeMormoops blainvillei1. ZoonomiaGCA_004026545.1LC
95Ashy-gray tube-nosed batCHIROPTERAVespertilionidaeMurina feae1. ZoonomiaGCA_004026665.1LC
96Brandt's batCHIROPTERAVespertilionidaeMyotis brandtii2. Existing assemblyGCF_000412655.1LC
97David's myotis batCHIROPTERAVespertilionidaeMyotis davidii2. Existing assemblyGCF_000327345.1LC
98Little brown batCHIROPTERAVespertilionidaeMyotis lucifugus2. Existing assemblyGCF_000147115.1LC
99Greater mouse-eared batCHIROPTERAVespertilionidaeMyotis myotis1. ZoonomiaGCA_004026985.1LC
100Greater bulldog batCHIROPTERANoctilionidaeNoctilio leporinus1. ZoonomiaGCA_004026585.1LC
101Common pipistrelleCHIROPTERAVespertilionidaePipistrellus pipistrellus1. ZoonomiaGCA_004026625.1LC
102Parnell's mustached batCHIROPTERAMormoopidaePteronotus parnellii2. Existing assemblyGCA_000465405.1LC
103Black flying foxCHIROPTERAPteropodidaePteropus alecto2. Existing assemblyGCF_000325575.1LC
104Large flying foxCHIROPTERAPteropodidaePteropus vampyrus2. Existing assemblyGCF_000151845.1NT
105Chinese rufous horseshoe batCHIROPTERARhinolophidaeRhinolophus sinicus2. Existing assemblyGCA_001888835.1LC
106Egyptian fruit batCHIROPTERAPteropodidaeRousettus aegyptiacus1. ZoonomiaGCA_004024865.1LC
107Mexican free-tailed batCHIROPTERAMolossidaeTadarida brasiliensis1. ZoonomiaGCA_004025005.1LC
108Stripe-headed round-eared batCHIROPTERAPhyllostomidaeTonatia saurophila1. ZoonomiaGCA_004024845.1LC
109Screaming hairy armadilloCINGULATADasypodidaeChaetophractus vellerosus1. ZoonomiaGCA_004027955.1LC
110Nine-banded armadilloCINGULATADasypodidaeDasypus novemcinctus2. Existing assemblyGCF_000208655.1LC
111Southern three-banded armadilloCINGULATADasypodidaeTolypeutes matacus1. ZoonomiaGCA_004025125.1NT
112Sunda flying lemurDERMOPTERACynocephalidaeGaleopterus variegatus1. ZoonomiaGCA_004027255.1LC
113Star-nosed moleEULIPOTYPHLATalpidaeCondylura cristata2. Existing assemblyGCF_000260355.1LC
114Indochinese shrewEULIPOTYPHLASoricidaeCrocidura indochinensis1. ZoonomiaGCA_004027635.1LC
115Western european hedgehogEULIPOTYPHLAErinaceidaeErinaceus europaeus2. Existing assemblyGCF_000296755.1LC
116Eastern moleEULIPOTYPHLATalpidaeScalopus aquaticus1. ZoonomiaGCA_004024925.1LC
117Hispaniolan solenodonEULIPOTYPHLASolenodontidaeSolenodon paradoxus1. ZoonomiaGCA_004363575.1EN
118European shrewEULIPOTYPHLASoricidaeSorex araneus2. Existing assemblyGCF_000181275.1LC
119Gracile shrew-like moleEULIPOTYPHLATalpidaeUropsilus gracilis1. ZoonomiaGCA_004024945.1LC
120African yellow-spotted rock hyraxHYRACOIDEAProcaviidaeHeterohyrax brucei1. ZoonomiaGCA_004026845.1LC
121South African rock hyraxHYRACOIDEAProcaviidaeProcavia capensis1. ZoonomiaGCA_004026925.1LC
122Snowshoe hareLAGOMORPHALeporidaeLepus americanus1. ZoonomiaGCA_004026855.1LC
123American pikaLAGOMORPHAOchotonidaeOchotona princeps2. Existing assemblyGCF_000292845.1LC
124RabbitLAGOMORPHALeporidaeOryctolagus cuniculus2. Existing assemblyGCF_000003625.3NT
125Cape elephant shrewMACROSCELIDEAMacroscelididaeElephantulus edwardii1. ZoonomiaGCA_004027355.1LC
126Southern white rhinocerosPERISSODACTYLARhinocerotidaeCeratotherium simum2. Existing assemblyGCF_000283155.1NT
127Northern white rhinoPERISSODACTYLARhinocerotidaeCeratotherium simum cottoni1. ZoonomiaGCA_004027795.1CR
128Sumatran rhinocerosPERISSODACTYLARhinocerotidaeDicerorhinus sumatrensis2. Existing assemblyGCA_002844835.1CR
129Black rhinocerousPERISSODACTYLARhinocerotidaeDiceros bicornis1. ZoonomiaGCA_004027315.1CR
130AssPERISSODACTYLAEquidaeEquus asinus2. Existing assemblyGCF_001305755.1LC
131HorsePERISSODACTYLAEquidaeEquus caballus2. Existing assemblyGCF_000002305.2LC
132Przewalski's horsePERISSODACTYLAEquidaeEquus przewalskii2. Existing assemblyGCF_000696695.1EN
133Malayan tapirPERISSODACTYLATapiridaeTapirus indicus1. ZoonomiaGCA_004024905.1EN
134South American tapirPERISSODACTYLATapiridaeTapirus terrestris1. ZoonomiaGCA_004025025.1VU
135Malayan pangolinPHOLIDOTAManidaeManis javanica2. Existing assemblyGCF_001685135.1CR
136Chinese pangolinPHOLIDOTAManidaeManis pentadactyla2. Existing assemblyGCA_000738955.1CR
137Linnaeus's two toed slothPILOSAMegalonychidaeCholoepus didactylus1. ZoonomiaGCA_004027855.1LC
138Hoffmann's two-fingered slothPILOSAMegalonychidaeCholoepus hoffmanni2. Existing assemblyGCA_000164785.2LC
139Giant anteaterPILOSAMyrmecophagidaeMyrmecophaga tridactyla1. ZoonomiaGCA_004026745.1VU
140Southern tamanduaPILOSAMyrmecophagidaeTamandua tetradactyla1. ZoonomiaGCA_004025105.1LC
141Mexican howler monkeyPRIMATESAtelidaeAlouatta palliata mexicana1. ZoonomiaGCA_004027835.1CR
142Ma's night monkeyPRIMATESAotidaeAotus nancymaae2. Existing assemblyGCA_000952055.2VU
143Geoffroy's spider monkeyPRIMATESAtelidaeAteles geoffroyi1. ZoonomiaGCA_004024785.1EN
144White-eared titiPRIMATESPitheciidaeCallicebus donacophilus1. ZoonomiaGCA_004027715.1LC
145White-tufted-ear marmosetPRIMATESCebidaeCallithrix jacchus2. Existing assemblyGCA_002754865.1LC
146White-fronted capuchinPRIMATESCebidaeCebus albifrons1. ZoonomiaGCA_004027755.1LC
147White-faced sapajouPRIMATESCebidaeCebus capucinus2. Existing assemblyGCF_001604975.1LC
148Sooty mangabeyPRIMATESCercopithecidaeCercocebus atys2. Existing assemblyGCF_000955945.1NT
149De brazza's monkeyPRIMATESCercopithecidaeCercopithecus neglectus1. ZoonomiaGCA_004027615.1LC
150Fat-tailed dwarf lemurPRIMATESCheirogaleidaeCheirogaleus medius1. ZoonomiaGCA_004024725.1LC
151Green monkeyPRIMATESCercopithecidaeChlorocebus sabaeus2. Existing assemblyGCF_000409795.2LC
152Angolan colobusPRIMATESCercopithecidaeColobus angolensis2. Existing assemblyGCF_000951035.1VU
153Aye-ayePRIMATESDaubentoniidaeDaubentonia madagascariensis1. ZoonomiaGCA_004027145.1EN
154Patas monkeyPRIMATESCercopithecidaeErythrocebus patas1. ZoonomiaGCA_004027335.1LC
155Sclater's lemurPRIMATESLemuridaeEulemur flavifrons2. Existing assemblyGCA_001262665.1CR
156Common brown lemurPRIMATESLemuridaeEulemur fulvus1. ZoonomiaGCA_004027275.1NT
157Western lowland gorillaPRIMATESHominidaeGorilla gorilla2. Existing assemblyGCA_900006655.3CR
158HumanPRIMATESHominidaeHomo sapiens2. Existing assemblyGCA_000001405.27LC
159IndriPRIMATESIndridaeIndri indri1. ZoonomiaGCA_004363605.1CR
160Ring tailed lemurPRIMATESLemuridaeLemur catta1. ZoonomiaGCA_004024665.1EN
161Crab-eating macaquePRIMATESCercopithecidaeMacaca fascicularis2. Existing assemblyGCF_000364345.1DD
162Rhesus monkeyPRIMATESCercopithecidaeMacaca mulatta2. Existing assemblyGCF_000772875.2LC
163Pig-tailed macaquePRIMATESCercopithecidaeMacaca nemestrina2. Existing assemblyGCF_000956065.1VU
164DrillPRIMATESCercopithecidaeMandrillus leucophaeus2. Existing assemblyGCF_000951045.1EN
165Gray mouse lemurPRIMATESCheirogaleidaeMicrocebus murinus2. Existing assemblyGCA_000165445.3LC
166Coquerel's giant mouse lemurPRIMATESCheirogaleidaeMirza coquereli1. ZoonomiaGCA_004024645.1EN
167Proboscis monkeyPRIMATESCercopithecidaeNasalis larvatus1. ZoonomiaGCA_004027105.1EN
168Northern white-cheeked gibbonPRIMATESHylobatidaeNomascus leucogenys2. Existing assemblyGCF_000146795.2CR
169Sunda slow lorisPRIMATESLorisidaeNycticebus coucang1. ZoonomiaGCA_004027815.1VU
170Small-eared galagoPRIMATESGalagidaeOtolemur garnettii2. Existing assemblyGCF_000181295.1LC
171Pygmy chimpanzeePRIMATESHominidaePan paniscus2. Existing assemblyGCF_000258655.2EN
172ChimpanzeePRIMATESHominidaePan troglodytes2. Existing assemblyGCA_002880755.3EN
173Olive baboonPRIMATESCercopithecidaePapio anubis2. Existing assemblyGCA_000264685.2LC
174Ugandan red colobusPRIMATESCercopithecidaePiliocolobus tephrosceles2. Existing assemblyGCA_002776525.1EN
175White-faced sakiPRIMATESPitheciidaePithecia pithecia1. ZoonomiaGCA_004026645.1LC
176Sumatran orangutanPRIMATESHominidaePongo abelii2. Existing assemblyGCA_002880775.3CR
177Coquerel's sifakaPRIMATESIndridaePropithecus coquereli2. Existing assemblyGCF_000956105.1EN
178Red-shanked doucPRIMATESCercopithecidaePygathrix nemaeus1. ZoonomiaGCA_004024825.1EN
179Black snub-nosed monkeyPRIMATESCercopithecidaeRhinopithecus bieti2. Existing assemblyGCF_001698545.1EN
180Golden snub-nosed monkeyPRIMATESCercopithecidaeRhinopithecus roxellana2. Existing assemblyGCF_000769185.1EN
181Emperor tamarinPRIMATESCebidaeSaguinus imperator1. ZoonomiaGCA_004024885.1LC
182Bolivian squirrel monkeyPRIMATESCebidaeSaimiri boliviensis2. Existing assemblyGCF_000235385.1LC
183Northern Plains gray langurPRIMATESCercopithecidaeSemnopithecus entellus1. ZoonomiaGCA_004025065.1LC
184African savanna elephantPROBOSCIDEAElephantidaeLoxodonta Africana2. Existing assemblyGCF_000001905.1VU
185Cairo spiny mouseRODENTIAMuridaeAcomys cahirinus1. ZoonomiaGCA_004027535.1LC
186Gobi jerboaRODENTIADipodidaeAllactaga bullata1. ZoonomiaGCA_004027895.1LC
187Mountain beaverRODENTIAAplodontiidaeAplodontia rufa1. ZoonomiaGCA_004027875.1LC
188Desmarest's hutiaRODENTIACapromyidaeCapromys pilorides1. ZoonomiaGCA_004027915.1LC
189North American beaverRODENTIACastoridaeCastor canadensis1. ZoonomiaGCA_004027675.1LC
190Brazilian guinea pigRODENTIACaviidaeCavia aperea2. Existing assemblyGCA_000688575.1LC
191Domestic guinea pigRODENTIACaviidaeCavia porcellus2. Existing assemblyGCF_000151735.1LC
192Montane guinea pigRODENTIACaviidaeCavia tschudii1. ZoonomiaGCA_004027695.1LC
193Long-tailed chinchillaRODENTIAChinchillidaeChinchilla lanigera2. Existing assemblyGCF_000276665.1EN
194Gambian pouched ratRODENTIANesomyidaeCricetomys gambianus1. ZoonomiaGCA_004027575.1LC
195Chinese hamsterRODENTIANesomyidaeCricetulus griseus2. Existing assemblyGCA_900186095.1LC
196Common gundiRODENTIACtenodactylidaeCtenodactylus gundi1. ZoonomiaGCA_004027205.1LC
197Social tuco-tucoRODENTIACtenomyidaeCtenomys sociabilis1. ZoonomiaGCA_004027165.1CR
198Lowland pacaRODENTIACuniculidaeCuniculus paca1. ZoonomiaGCA_004365215.1LC
199Central American agoutiRODENTIADasyproctidaeDasyprocta punctata1. ZoonomiaGCA_004363535.1LC
200PacaranaRODENTIADinomyidaeDinomys branickii1. ZoonomiaGCA_004027595.1LC
201Ord's kangaroo ratRODENTIAHeteromyidaeDipodomys ordii2. Existing assemblyGCF_000151885.1LC
202Stephen's kangaroo ratRODENTIAHeteromyidaeDipodomys stephensi1. ZoonomiaGCA_004024685.1VU
203Patagonian maraRODENTIACaviidaeDolichotis patagonum1. ZoonomiaGCA_004027295.1NT
204Transcaucasian mole voleRODENTIACricetidaeEllobius lutescens2. Existing assemblyGCA_001685075.1LC
205Northern mole voleRODENTIACricetidaeEllobius talpinus2. Existing assemblyGCA_001685095.1LC
206Damara mole-ratRODENTIABathyergidaeFukomys damarensis2. Existing assemblyGCF_000743615.1LC
207Edible dormouseRODENTIAGliridaeGlis glis1. ZoonomiaGCA_004027185.1LC
208Woodland doormouseRODENTIAGliridaeGraphiurus murinus1. ZoonomiaGCA_004027655.1LC
209Naked mole-ratRODENTIABathyergidaeHeterocephalus glaber2. Existing assemblyGCF_000247695.1LC
210CapybaraRODENTIACaviidaeHydrochoerus hydrochaeris1. ZoonomiaGCA_004027455.1LC
211Northern crested porcupineRODENTIAHystricidaeHystrix cristata1. ZoonomiaGCA_004026905.1LC
212Thirteen-lined ground squirrelRODENTIASciuridaeIctidomys tridecemlineatus2. Existing assemblyGCF_000236235.1LC
213Lesser egyptian jerboaRODENTIADipodidaeJaculus jaculus2. Existing assemblyGCF_000280705.1LC
214Alpine marmotRODENTIASciuridaeMarmota marmota2. Existing assemblyGCF_001458135.1LC
215Mongolian jirdRODENTIAMuridaeMeriones unguiculatus1. ZoonomiaGCA_004026785.1LC
216Golden hamsterRODENTIACricetidaeMesocricetus auratus2. Existing assemblyGCF_000349665.1VU
217Prairie voleRODENTIACricetidaeMicrotus ochrogaster2. Existing assemblyGCF_000317375.1LC
218Ryukyu mouseRODENTIAMuridaeMus caroli2. Existing assemblyGCA_900094665.2LC
219House mouseRODENTIAMuridaeMus musculus2. Existing assemblyGCF_000001635.26LC
220Shrew mouseRODENTIAMuridaeMus pahari2. Existing assemblyGCA_900095145.2LC
221Western wild mouseRODENTIAMuridaeMus spretus2. Existing assemblyGCA_001624865.1LC
222Hazel dormouseRODENTIAGliridaeMuscardinus avellanarius1. ZoonomiaGCA_004027005.1LC
223CoypuRODENTIAMyocastoridaeMyocastor coypus1. ZoonomiaGCA_004027025.1LC
224Upper galilee mountains blind mole ratRODENTIASpalacidaeNannospalax galili2. Existing assemblyGCF_000622305.1DD
225DeguRODENTIAOctodontidaeOctodon degus2. Existing assemblyGCF_000260255.1LC
226MuskratRODENTIACricetidaeOndatra zibethicus1. ZoonomiaGCA_004026605.1LC
227Scorpion mouseRODENTIACricetidaeOnychomys torridus1. ZoonomiaGCA_004026725.1LC
228Pacific pocket mouseRODENTIAHeteromyidaePerognathus longimembris pacificus1. ZoonomiaGCA_004363475.1LC
229Prairie deer mouseRODENTIACricetidaePeromyscus maniculatus2. Existing assemblyGCF_000500345.1LC
230Dassie ratRODENTIAPetromuridaePetromus typicus1. ZoonomiaGCA_004026965.1LC
231Fat sand ratRODENTIAMuridaePsammomys obesus2. Existing assemblyGCA_002215935.1LC
232Norway ratRODENTIAMuridaeRattus norvegicus2. Existing assemblyGCF_000001895.5LC
233Hispid cotton ratRODENTIACricetidaeSigmodon hispidus1. ZoonomiaGCA_004025045.1LC
234Daurian ground squirrelRODENTIASciuridaeSpermophilus dauricus2. Existing assemblyGCA_002406435.1LC
235Greater cane ratRODENTIAThryonomyidaeThryonomys swinderianus1. ZoonomiaGCA_004025085.1LC
236Cape ground squirrelRODENTIASciuridaeXerus inauris1. ZoonomiaGCA_004024805.1LC
237Meadow jumping mouseRODENTIADipodidaeZapus hudsonius1. ZoonomiaGCA_004024765.1LC
238Northern tree shrewSCANDENTIATupaiidaeTupaia belangeri chinensis2. Existing assemblyGCF_000334495.1LC
239Large treeshrewSCANDENTIATupaiidaeTupaia tana1. ZoonomiaGCA_004365275.1LC
240Florida manateeSIRENIATrichechidaeTrichechus manatus2. Existing assemblyGCF_000243295.1EN
241AardvarkTUBULIDENTATAOrycteropodidaeOrycteropus afer1. ZoonomiaGCA_004365145.1LC

\ Table 1. Genome assemblies included in the 241-way Conservation track.
\ Species status:LC = Least Concern; NT = Near threatened; VU = Vulnerable; EN = Endangered; CR = Critically endangered
\

\ \

Display Conventions and Configuration

\

\ In full and pack display modes, conservation scores are displayed as a\ wiggle track (histogram) in which the height reflects the\ size of the score.\ The conservation wiggles can be configured in a variety of ways to\ highlight different aspects of the displayed information.\ Click the Graph configuration help link for an explanation\ of the configuration options.

\

\ Pairwise alignments of each species to the human genome are\ displayed below the conservation histogram as a grayscale density plot (in\ pack mode) or as a wiggle (in full mode) that indicates alignment quality.\ In dense display mode, conservation is shown in grayscale using\ darker values to indicate higher levels of overall conservation\ as scored by phastCons.

\

\ Checkboxes on the track configuration page allow selection of the\ species to include in the pairwise display.\ Note that excluding species from the pairwise display does not alter the\ the conservation score display.

\

\ To view detailed information about the alignments at a specific\ position, zoom the display in to 30,000 or fewer bases, then click on\ the alignment.

\ \

Gap Annotation

\

\ The Display chains between alignments configuration option\ enables display of gaps between alignment blocks in the pairwise alignments in\ a manner similar to the Chain track display. The following\ conventions are used:\

    \
  • Single line: No bases in the aligned species. Possibly due to a\ lineage-specific insertion between the aligned blocks in the human genome\ or a lineage-specific deletion between the aligned blocks in the aligning\ species.\
  • Double line: Aligning species has one or more unalignable bases in\ the gap region. Possibly due to excessive evolutionary distance between\ species or independent indels in the region between the aligned blocks in both\ species.\
  • Pale yellow coloring: Aligning species has Ns in the gap region.\ Reflects uncertainty in the relationship between the DNA of both species, due\ to lack of sequence in relevant portions of the aligning species.\

\ \

Genomic Breaks

\

\ Discontinuities in the genomic context (chromosome, scaffold or region) of the\ aligned DNA in the aligning species are shown as follows:\

    \
  • \ Vertical blue bar: Represents a discontinuity that persists indefinitely\ on either side, e.g. a large region of DNA on either side of the bar\ comes from a different chromosome in the aligned species due to a large scale\ rearrangement.\
  • \ Green square brackets: Enclose shorter alignments consisting of DNA from\ one genomic context in the aligned species nested inside a larger chain of\ alignments from a different genomic context. The alignment within the\ brackets may represent a short misalignment, a lineage-specific insertion of a\ transposon in the human genome that aligns to a paralogous copy somewhere\ else in the aligned species, or other similar occurrence.\

\ \

Base Level

\

\ When zoomed-in to the base-level display, the track shows the base\ composition of each alignment. The numbers and symbols on the Gaps\ line indicate the lengths of gaps in the human sequence at those\ alignment positions relative to the longest non-human sequence.\ If there is sufficient space in the display, the size of the gap is shown.\ If the space is insufficient and the gap size is a multiple of 3, a\ "*" is displayed; other gap sizes are indicated by "+".

\

\ Codon translation is available in base-level display mode if the\ displayed region is identified as a coding segment. To display this annotation,\ select the species for translation from the pull-down menu in the Codon\ Translation configuration section at the top of the page. Then, select one of\ the following modes:\

    \
  • \ No codon translation: The gene annotation is not used; the bases are\ displayed without translation.\
  • \ Use default species reading frames for translation: The annotations from\ the genome displayed in the Default species to establish reading frame\ pull-down menu are used to translate all the aligned species present in the\ alignment.\
  • \ Use reading frames for species if available, otherwise no translation:\ Codon translation is performed only for those species where the region is\ annotated as protein coding.\
  • Use reading frames for species if available, otherwise use default species:\ Codon translation is done on those species that are annotated as being protein\ coding over the aligned region using species-specific annotation; the remaining\ species are translated using the default species annotation.\

\

\ Codon translation uses the following gene tracks as the basis for translation:\

\ \ \ \ \ \
Gene TrackSpecies
UCSC GenesHuman
Ensembl Genes v104Brazilian guinea pig, gibbon
RefSeq GenesAngolan colobus, Balaenoptera acutorostrata, Bison bison, Black flying-fox, Brandt's myotis (bat), Bushbaby, Camelus bactrianus, Camelus ferus, Canis lupus familiaris, Cape elephant shrew, Capra hircus, Cavia porcellus, Ceratotherium simum, Cercocebus atys, Chinchilla, Chinese tree shrew, Chlorocebus sabaeus, Condylura cristata, Damara mole rat, Dasypus novemcinctus, David's myotis (bat), Delphinapterus leucas, Echinops telfairi, Enhydra lutris, Eptesicus fuscus, Equus asinus, Equus przewalskii, Erinaceus europaeus, Felis catus, Heterocephalus glaber, Jaculus jaculus, Kangaroo rat, Killer whale, Leptonychotes weddellii, Lipotes vexillifer, Little brown bat, Loxodonta africana, Macaca fascicularis, Macaca nemestrina, Mandrillus leucophaeus, Manis javanica, Marmota marmota, Mesocricetus auratus, Miniopterus natalensis, Mus musculus, Nannospalax galili, Ochotona princeps, Octodon degus, Oryctolagus cuniculus, Pacific walrus, Pan paniscus, Panthera tigris, Peromyscus maniculatus, Prairie vole, Propithecus coquereli, Pteropus vampyrus, Puma concolor, Rattus norvegicus, Rhinopithecus bieti, Shrew, Squirrel monkey, Squirrel, Sus scrofa, Trichechus manatus, Ursus maritimus, White-faced sapajou, Wild yak
no annotationAcinonyx jubatus, Acomys cahirinus, Ailuropoda melanoleuca, Ailurus fulgens, Allactaga bullata, Alouatta palliata, Ammotragus lervia, Anoura caudifer, Antilocapra americana, Aotus nancymaae, Aplodontia rufa, Artibeus jamaicensis, Ateles geoffroyi, Balaenoptera bonaerensis, Beatragus hunteri, Bos indicus, Bos taurus, Bubalus bubalis, Callicebus donacophilus, Callithrix jacchus, Camelus dromedarius, Canis lupus, Capra aegagrus, Capromys pilorides, Carollia perspicillata, Castor canadensis, Catagonus wagneri, Cavia tschudii, Cebus albifrons, Ceratotherium simum cottoni, Cercopithecus neglectus, Chaetophractus vellerosus, Cheirogaleus medius, Choloepus didactylus, Choloepus hoffmanni, Chrysochloris asiatica, Craseonycteris thonglongyai, Cricetomys gambianus, Cricetulus griseus, Crocidura indochinensis, Cryptoprocta ferox, Ctenodactylus gundi, Ctenomys sociabilis, Cuniculus paca, Dasyprocta punctata, Daubentonia madagascariensis, Desmodus rotundus, Dicerorhinus sumatrensis, Diceros bicornis, Dinomys branickii, Dipodomys stephensi, Dolichotis patagonum, Elaphurus davidianus, Ellobius lutescens, Ellobius talpinus, Equus caballus, Erythrocebus patas, Eschrichtius robustus, Eubalaena japonica, Eulemur flavifrons, Eulemur fulvus, Felis nigripes, Galeopterus variegatus, Giraffa tippelskirchi, Glis glis, Gorilla gorilla, Graphiurus murinus, Helogale parvula, Hemitragus hylocrius, Heterohyrax brucei, Hippopotamus amphibius, Hipposideros armiger, Hipposideros galeritus, Hyaena hyaena, Hydrochoerus hydrochaeris, Hystrix cristata, Indri indri, Inia geoffrensis, Kogia breviceps, Lasiurus borealis, Lemur catta, Lepus americanus, Lycaon pictus, Macaca mulatta, Macroglossus sobrinus, Manis pentadactyla, Megaderma lyra, Mellivora capensis, Meriones unguiculatus, Mesoplodon bidens, Microcebus murinus, Microgale talazaci, Micronycteris hirsuta, Miniopterus schreibersii, Mirounga angustirostris, Mirza coquereli, Monodon monoceros, Mormoops blainvillei, Moschus moschiferus, Mungos mungo, Murina feae, Mus caroli, Mus pahari, Mus spretus, Muscardinus avellanarius, Mustela putorius, Myocastor coypus, Myotis myotis, Myrmecophaga tridactyla, Nasalis larvatus, Neomonachus schauinslandi, Neophocaena asiaeorientalis, Noctilio leporinus, Nycticebus coucang, Odocoileus virginianus, Okapia johnstoni, Ondatra zibethicus, Onychomys torridus, Orycteropus afer, Ovis aries, Ovis canadensis, Pan troglodytes, Panthera onca, Panthera pardus, Pantholops hodgsonii, Papio anubis, Paradoxurus hermaphroditus
\ Table 2. Gene tracks used for codon translation.\

\ \

Methods

\

\ The Zoonomia alignment was composed of two sets of mammalian genomes: newly\ assembled DISCOVAR assemblies and GenBank assemblies. The DISCOVAR genomes\ were masked with RepeatMasker (commit 2d947604), using Repbase version\ 20170127 as the repeat library and CrossMatch as the alignment engine. The\ pipeline used is available at\ repeatMaskerPipeline\ (commit a6ad966). The\ guide-tree topology was taken from the TimeTree database (using release\ current in October 2018), and the branch lengths were estimated using the\ least-squares-fit mode of PHYLIP, version\ 3.695. The distance matrix used was largely based on distances from the 4d\ site trees from the UCSC browser. To add those species not present in the\ UCSC tree, approximate distances estimated by Mash (commit 541971b)\ to the closest UCSC species\ were added to the distance between the two closest UCSC species. We used the\ HAL package (commit 68db41d)\ produce the HAL file.\

\

\

\

\

\ \

Phylogenetic Tree Model

\

\ The phyloP are phylogenetic methods that rely\ on a tree model containing the tree topology, branch lengths representing\ evolutionary distance at neutrally evolving sites, the background distribution\ of nucleotides, and a substitution rate matrix.\ The\ all-species tree model for this track was\ generated using the phyloFit program from the PHAST package\ (REV model, EM algorithm, medium precision) using multiple alignments of\ 4-fold degenerate sites extracted from the 241-way alignment\ (msa_view). The 4d sites were derived from the RefSeq (Reviewed+Coding) gene\ set, filtered to select single-coverage long transcripts.\

\

\ This same tree model was used in the phyloP calculations; however, the\ background frequencies were modified to maintain reversibility.\ The resulting tree model:\ all species.\

\

PhyloP Conservation

\

\ The phyloP program supports several different methods for computing\ p-values of conservation or acceleration, for individual nucleotides or\ larger elements (\ http://compgen.cshl.edu/phast/). Here it was used\ to produce separate scores at each base (--wig-scores option), considering\ all branches of the phylogeny rather than a particular subtree or lineage\ (i.e., the --subtree option was not used). The scores were computed by\ performing a likelihood ratio test at each alignment column (--method LRT),\ and scores for both conservation and acceleration were produced (--mode\ CONACC).\

\ \

References

\ \ \

Zoonomia:

\

\ Zoonomia Consortium..\ \ A comparative genomics multitool for scientific discovery and conservation.\ Nature. 2020 Nov;587(7833):240-245.\ PMID: 33177664;\ PMC: PMC7759459;\ DOI: 10.1038/s41586-020-2876-6\

\ \ \

Cactus:

\

\ Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q, Xie D, Feng S, Stiller J\ et al.\ \ Progressive Cactus is a multiple-genome aligner for the thousand-genome era.\ Nature. 2020 Nov;587(7833):246-251.\ PMID: 33177663;\ PMC: PMC7673649;\ DOI: 10.1038/s41586-020-2871-y\

\ \

\ Paten B, Earl D, Nguyen N, Diekhans M, Zerbino D, Haussler D.\ \ Cactus: Algorithms for genome multiple sequence alignment.\ Genome Res. 2011 Sep;21(9):1512-28.\ PMID: 21665927;\ PMC: PMC3166836;\ DOI: 10.1101/gr.123356.111\

\ \

\ Harris RS.\ Improved pairwise alignment of genomic DNA.\ Ph.D. Thesis. Pennsylvania State University, USA. 2007.\

\ \

PhyloP:

\

\ Cooper GM, Stone EA, Asimenos G, NISC Comparative Sequencing Program., Green ED, Batzoglou S, Sidow\ A.\ \ Distribution and intensity of constraint in mammalian genomic sequence.\ Genome Res. 2005 Jul;15(7):901-13.\ PMID: 15965027;\ PMC: PMC1172034;\ DOI: 10.1101/gr.3577405\

\ \

\ Pollard KS, Hubisz MJ, Rosenbloom KR, Siepel A.\ \ Detection of nonneutral substitution rates on mammalian phylogenies.\ Genome Res. 2010 Jan;20(1):110-21.\ PMID: 19858363;\ PMC: PMC2798823\

\ \

\ Siepel A, Haussler D.\ Phylogenetic Hidden Markov Models.\ In: Nielsen R, editor. Statistical Methods in Molecular Evolution.\ New York: Springer; 2005. pp. 325-351.\ DOI: 10.1007/0-387-27733-1_12\

\ \

\ Siepel A, Pollard KS, and Haussler D. New methods for detecting\ lineage-specific selection. In Proceedings of the 10th International\ Conference on Research in Computational Molecular Biology (RECOMB 2006), pp. 190-205.\ DOI: 10.1007/11732990_17\

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vcfPhasedTrio Genome In a Bottle Chinese Trio 0 2 0 0 0 127 127 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/giab/ChineseTrio/merged.vcf.gz\ longLabel Genome In a Bottle Chinese Trio\ maxWindowToDraw 5000000\ parent triosView\ shortLabel Chinese Trio\ subGroups view=trios\ track chineseTrio\ type vcfPhasedTrio\ vcfChildSample HG005|son\ vcfDoFilter off\ vcfDoMaf off\ vcfDoQual off\ vcfParentSamples HG006|father,HG007|mother\ vcfUseAltSampleNames on\ clinGenTriplo ClinGen Triplosensitivity bigBed 9 + ClinGen Dosage Sensitivity Map - Triplosensitivity 3 2 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg38/bbi/clinGen/clinGenTriplo.bb\ filterLabel.triploScore Dosage Sensitivity Score\ filterValues.triploScore 0|No evidence available,1|Little evidence for dosage pathogenicity,2|Some evidence for dosage pathogenicity,3|Sufficient evidence for dosage pathogenicity,30|Gene associated with autosomal recessive phenotype,40|Dosage sensitivity unlikely\ longLabel ClinGen Dosage Sensitivity Map - Triplosensitivity\ mouseOverField _mouseOver\ parent clinGenComp on\ priority 2\ shortLabel ClinGen Triplosensitivity\ track clinGenTriplo\ type bigBed 9 +\ urls url="$$" PMID1="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID2="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID3="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID4="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID5="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID6="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" mondoID="https://monarchinitiative.org/disease/$$"\ visibility pack\ clinvarCnv ClinVar CNVs bigBed 12 + ClinVar Copy Number Variants >= 50bp 0 2 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg38/bbi/clinvar/clinvarCnv.bb\ filter._varLen 50:999999999\ filterByRange._varLen on\ filterLabel._originCode Alelle Origin\ filterLimits._varLen 50:999999999\ filterType._allTypeCode multiple\ filterType._clinSignCode multiple\ filterType._originCode multiple\ filterValues._allTypeCode SUBST|single nucleotide variant - SUBST,STRUCT|translocation and fusion - STRUCT,LOSS|deletion and copy loss - LOSS,GAIN|duplication and copy gain - GAIN,INS|indel and insertion - INS,INV|inversion - INV,SEQALT|undetermined - SEQALT,SEQLEN|repeat change - SEQLEN\ filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,UC|uncertain,OT|other\ filterValues._originCode GERM|germline,SOM|somatic,GERMSOM|germline/somatic,NOVO|de novo,UNK|unknown\ group phenDis\ itemRgb on\ longLabel ClinVar Copy Number Variants >= 50bp\ mergeSpannedItems on\ mouseOverField _mouseOver\ noScoreFilter on\ parent clinvar\ priority 2\ searchIndex _dbVarSsvId\ shortLabel ClinVar CNVs\ skipFields rcvAcc\ track clinvarCnv\ type bigBed 12 +\ urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/snp/$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"\ visibility hide\ dbSnp155ClinVar ClinVar dbSNP(155) bigDbSnp Short Genetic Variants from dbSNP Release 155 Included in ClinVar 1 2 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg38/snp/dbSnp155ClinVar.bb\ defaultGeneTracks knownGene\ longLabel Short Genetic Variants from dbSNP Release 155 Included in ClinVar\ parent dbSnp155ViewVariants off\ priority 2\ shortLabel ClinVar dbSNP(155)\ subGroups view=variants\ track dbSnp155ClinVar\ wgEncodeGencodeCompV20 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)\ parent wgEncodeGencodeV20ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV20\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV22 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)\ parent wgEncodeGencodeV22ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV22\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV23 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)\ parent wgEncodeGencodeV23ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV23\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV24 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)\ parent wgEncodeGencodeV24ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV24\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV25 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)\ parent wgEncodeGencodeV25ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV25\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV26 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)\ parent wgEncodeGencodeV26ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV26\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV27 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)\ parent wgEncodeGencodeV27ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV27\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV28 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)\ parent wgEncodeGencodeV28ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV28\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV29 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)\ parent wgEncodeGencodeV29ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV29\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV30 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 30 (Ensembl 96) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 30 (Ensembl 96)\ parent wgEncodeGencodeV30ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV30\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV31 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)\ parent wgEncodeGencodeV31ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV31\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV32 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 32 (Ensembl 98) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 32 (Ensembl 98)\ parent wgEncodeGencodeV32ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV32\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV33 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 33 (Ensembl 99) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 33 (Ensembl 99)\ parent wgEncodeGencodeV33ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV33\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV34 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 34 (Ensembl 100) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 34 (Ensembl 100)\ parent wgEncodeGencodeV34ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV34\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV35 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 35 (Ensembl 101) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 35 (Ensembl 101)\ parent wgEncodeGencodeV35ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV35\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV36 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 36 (Ensembl 102) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 36 (Ensembl 102)\ parent wgEncodeGencodeV36ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV36\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV37 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 37 (Ensembl 103) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 37 (Ensembl 103)\ parent wgEncodeGencodeV37ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV38 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 38 (Ensembl 104) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 38 (Ensembl 104)\ parent wgEncodeGencodeV38ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV38\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV39 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 39 (Ensembl 105) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 39 (Ensembl 105)\ parent wgEncodeGencodeV39ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV39\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV40 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 40 (Ensembl 106) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 40 (Ensembl 106)\ parent wgEncodeGencodeV40ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV40\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV41 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 41 (Ensembl 107) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 41 (Ensembl 107)\ parent wgEncodeGencodeV41ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV41\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV42 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 42 (Ensembl 108) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 42 (Ensembl 108)\ parent wgEncodeGencodeV42ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV42\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV43 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 43 (Ensembl 109) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 43 (Ensembl 109)\ parent wgEncodeGencodeV43ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV43\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV44 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 44 (Ensembl 110) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 44 (Ensembl 110)\ parent wgEncodeGencodeV44ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV44\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV45 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 45 (Ensembl 111) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 45 (Ensembl 111)\ parent wgEncodeGencodeV45ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV45\ trackHandler wgEncodeGencode\ type genePred\ cnvDevDelayControl Control gvf Copy Number Variation Morbidity Map of Developmental Delay - Control 3 2 0 0 0 127 127 127 0 0 0 phenDis 1 longLabel Copy Number Variation Morbidity Map of Developmental Delay - Control\ parent cnvDevDelay on\ priority 2\ shortLabel Control\ track cnvDevDelayControl\ type gvf\ visibility pack\ covidHgiGwasR4Pval COVID GWAS v4 bigLolly 9 + COVID risk variants from GWAS meta-analyses by the COVID-19 Host Genetics Initiative (Rel 4, Oct 2020) 0 2 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,

Description

\

\ This track set shows the results of the\ GWAS Data Release 4 (October 2020) \ from the \ \ COVID-19 Host Genetics Initiative (HGI): \ a collaborative effort to facilitate \ the generation of meta-analysis across multiple studies contributed by\ partners world-wide\ to identify the genetic determinants of SARS-CoV-2 infection susceptibility, disease severity \ and outcomes. The COVID-19 HGI also aims to provide a platform for study partners to \ share analytical results in the form of summary statistics and/or individual level data of COVID-19\ host genetics research. At the time of this release, a total of 137 studies were registered with \ this effort.\

\ \

\ The specific phenotypes studied by the COVID-19 HGI are those that benefit from maximal sample \ size: primary analysis on disease severity. For the Data Release 4 the number of cases have\ increased by nearly ten-fold (more than 30,000 COVID-19 cases and 1.47 million controls) by combining\ data from 34 studies across 16 countries. \

\ \

\ The four tracks here are based on data from HGI meta-analyses A2, B2, C1, and C2, described here:\

\ \ \ \ Due to privacy concerns, these browser tracks exclude data provided by 23andMe contributed\ studies in the full analysis results. The actual study and case \ and control counts for the individual browser tracks are listed in the track labels. Details on \ all studies can be found here.\ \

Display Conventions

\

\ Displayed items are colored by GWAS effect: red for positive (harmful) effect, \ blue for negative (protective) effect.\ The height ('lollipop stem') of the item is based on statistical significance (p-value). \ For better visualization of the data, only SNPs with p-values smaller than 1e-3 are \ displayed by default.

\

\ The color saturation indicates effect size (beta coefficient): values over the median of effect \ size are brightly colored (bright red\   \ , bright blue\   \ ),\ those below the median are paler (light red\   \ , light blue\   \ ). \

\

\ Each track has separate display controls and data can be filtered according to the\ number of studies, minimum -log10 p-value, and the\ effect size (beta coefficient), using the track Configure options.

\

\ Mouseover on items shows the rs ID (or chrom:pos if none assigned), both the non-effect \ and effect alleles, the effect size (beta coefficient), the p-value, and the number of \ studies.\ Additional information on each variant can be found on the details page by clicking on \ the item.

\ \

Methods

\

\ COVID-19 Host Genetics Initiative (HGI) GWAS meta-analysis round 4 (October 2020) results were \ used in this study. \ Each participating study partner submitted GWAS summary statistics for up to four \ of the COVID-19 phenotype definitions.

\

\ Data were generated from genome-wide SNP array and whole exome and genome\ sequencing, leveraging the impact of both common and rare variants. The statistical analysis\ performed takes into account differences between sex, ancestry, and date of sample collection. \ Alleles were harmonized across studies and reported allele frequencies are based on gnomAD \ version 3.0 reference data. Most study partners used the SAIGE GWAS pipeline in order \ to generate summary statistics used for the COVID-19 HGI meta-analysis. The summary statistics \ of individual studies were manually examined for inflation, \ deflation, and excessive number of false positives. \ Qualifying summary statistics were filtered for \ INFO > 0.6 and MAF > 0.0001 prior to meta-analyzing the entirety of the data. \

\ The meta-analysis was performed using fixed effects inverse variance weighting.\ The meta-analysis software and workflow are available here. More information about the \ prospective studies, processing pipeline, results and data sharing can be found \ here.\

\ \

Data Access

\

\ The data underlying these tracks and summary statistics results are publicly available in COVID19-hg Release 4 (October 2020).\ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. \ Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.\

\ \

Credits

\

\ Thanks to the COVID-19 Host Genetics Initiative contributors and project leads for making these \ data available, and in particular to Rachel Liao, Juha Karjalainen, and Kumar Veerapen at the \ Broad Institute for their review and input during browser track development.\

\ \

References

\ \

\ COVID-19 Host Genetics Initiative.\ \ The COVID-19 Host Genetics Initiative, a global initiative to elucidate the role of host genetic\ factors in susceptibility and severity of the SARS-CoV-2 virus pandemic.\ Eur J Hum Genet. 2020 Jun;28(6):715-718.\ PMID: 32404885; PMC: PMC7220587\

\ \

\ Pairo-Castineira E, Clohisey S, Klaric L, Bretherick AD, Rawlik K, Pasko D, Walker S, Parkinson N,\ Fourman MH, Russell CD et al.\ \ Genetic mechanisms of critical illness in Covid-19.\ Nature. 2020 Dec 11;.\ PMID: 33307546\

\ \ \ varRep 1 autoScale on\ bedNameLabel SNP\ chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22\ compositeTrack on\ filter._effectSizeAbs 0\ filter.effectSize -1.6:2.2\ filter.pValueLog 3\ filter.sourceCount 1\ filterByRange.effectSize on\ filterLabel._effectSizeAbs Minimum effect size +-\ filterLabel.effectSize Effect size range\ filterLabel.sourceCount Minimum number of studies\ filterLimits.effectSize -1.6:2.2\ group varRep\ lollyField 13\ longLabel COVID risk variants from GWAS meta-analyses by the COVID-19 Host Genetics Initiative (Rel 4, Oct 2020)\ maxHeightPixels 48:75:128\ maxItems 500000\ mouseOver $name $ref/$alt effect $effectSize pVal $pValue studies $sourceCount\ noScoreFilter on\ priority 2\ shortLabel COVID GWAS v4\ track covidHgiGwasR4Pval\ type bigLolly 9 +\ viewLimits 0:10\ visibility hide\ cq7Vcf CQ-7 Variants vcfTabix CQ-7 Variants 0 2 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/problematic/highRepro/CQ-7.sort.vcf.gz\ longLabel CQ-7 Variants\ parent highReproVcfs\ shortLabel CQ-7 Variants\ subGroups view=vcfs\ track cq7Vcf\ type vcfTabix\ crossTissueMapsFullDetails Cross Tissue Details bigBarChart Cross tissue nuclei full details 0 2 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=tabula-sapiens+all&gene=$

\ Description

\

\ This track collection shows data from \ Single-nucleus cross-tissue molecular reference maps toward\ understanding disease gene function. The dataset covers ~200,000 single nuclei\ from a total of 16 human donors across 25 samples, using 4 different sample preparation\ protocols followed by droplet based single-cell RNA-seq. The samples were obtained from\ frozen tissue as part of the Genotype-Tissue Expression (GTEx) project.\ Samples were taken from the esophagus, skeletal muscle, heart, lung, prostate, breast,\ and skin. The dataset includes 43 broad cell classes, some specific to certain tissues\ and some shared across all tissue types.\

\ \

\ This track collection contains three bar chart tracks of RNA expression. The first track,\ Cross Tissue Nuclei, allows\ cells to be grouped together and faceted on up to 4 categories: tissue, cell class, cell subclass,\ and cell type. The second track,\ Cross Tissue Details, allows\ cells to be grouped together and faceted on up to 7 categories: tissue, cell class, cell subclass,\ cell type, granular cell type, sex, and donor. The third track,\ GTEx Immune Atlas,\ allows cells to be grouped together and faceted on up to 5 categories: tissue, cell type, cell\ class, sex, and donor.\

\ \

\ Please see the\ GTEx portal\ for further interactive displays and additional data.

\ \

Display Conventions and Configuration

\

\ Tissue-cell type combinations in the Full and Combined tracks are\ colored by which cell type they belong to in the below table:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \
ColorCell Type
Endothelial
Epithelial
Glia
Immune
Neuron
Stromal
Other
\

\ \

\ Tissue-cell type combinations in the Immune Atlas track are shaded according\ to the below table:\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
ColorCell Type
Inflammatory Macrophage
Lung Macrophage
Monocyte/Macrophage FCGR3A High
Monocyte/Macrophage FCGR3A Low
Macrophage HLAII High
Macrophage LYVE1 High
Proliferating Macrophage
Dendritic Cell 1
Dendritic Cell 2
Mature Dendritic Cell
Langerhans
CD14+ Monocyte
CD16+ Monocyte
LAM-like
Other
\

\ \

Methods

\

\ Using the previously collected tissue samples from the Genotype-Tissue Expression\ project, nuclei were isolated using four different protocols and sequenced\ using droplet based single cell RNA-seq. CellBender v2.1 and other standard quality\ control techniques were applied, resulting in 209,126 nuclei profiles across eight\ tissues, with a mean of 918 genes and 1519 transcripts per profile.\

\ \

\ Data from all samples was integrated with a conditional variation autoencoder\ in order to correct for multiple sources of variation like sex, and protocol\ while preserving tissue and cell type specific effects.\

\ \

\ For detailed methods, please refer to Eraslan et al, or the\ \ GTEx portal website.\

\ \

UCSC Methods

\

\ The gene expression files were downloaded from the\ \ GTEx portal. The UCSC command line utilities matrixClusterColumns,\ matrixToBarChartBed, and bedToBigBed were used to transform\ these into a bar chart format bigBed file that can be visualized.\ The UCSC utilities can be found on\ our download server.\

\ \

Data Access

\

\ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions or our Data Access FAQ for more\ information.

\ \

Credits

\

Thanks to the GTEx Consortium for creating and analyzing these data.

\ \

References

\

\ Eraslan G, Drokhlyansky E, Anand S, Fiskin E, Subramanian A, Slyper M, Wang J, Van Wittenberghe N,\ Rouhana JM, Waldman J et al.\ \ Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function.\ Science. 2022 May 13;376(6594):eabl4290.\ PMID: 35549429; PMC: PMC9383269\

\ singleCell 1 barChartCategoryUrl /gbdb/hg38/bbi/crossTissueMaps/facet_detailed.categories\ barChartFacets tissue,cell_class,cell_subclass,cell_type,granular_cell_type,sex,donor\ barChartMerge on\ barChartMetric gene/genome\ barChartStatsUrl /gbdb/hg38/bbi/crossTissueMaps/facet_detailed.facets\ barChartStretchToItem on\ barChartUnit parts per million\ bigDataUrl /gbdb/hg38/bbi/crossTissueMaps/facet_detailed.bb\ defaultLabelFields name\ html crossTissueMaps\ labelFields name,name2\ longLabel Cross tissue nuclei full details\ maxWindowToDraw 10000000\ parent crossTissueMaps\ priority 2\ shortLabel Cross Tissue Details\ track crossTissueMapsFullDetails\ type bigBarChart\ url https://cells.ucsc.edu/?ds=tabula-sapiens+all&gene=$\ urlLabel View on the UCSC Cell Browser: $\ visibility hide\ dbSnp153ClinVar dbSNP(153) in ClinVar bigDbSnp Short Genetic Variants from dbSNP Release 153 Included in ClinVar 1 2 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg38/snp/dbSnp153ClinVar.bb\ defaultGeneTracks knownGene\ longLabel Short Genetic Variants from dbSNP Release 153 Included in ClinVar\ parent dbSnp153ViewVariants off\ priority 2\ shortLabel dbSNP(153) in ClinVar\ subGroups view=variants\ track dbSnp153ClinVar\ dbVar_common_african dbVar Curated African SVs bigBed 9 + . NCBI dbVar Curated Common SVs: African 3 2 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg38/bbi/dbVar/common_african.bb\ longLabel NCBI dbVar Curated Common SVs: African\ parent dbVar_common on\ shortLabel dbVar Curated African SVs\ track dbVar_common_african\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ dgvSupporting DGV Supp Var bigBed 9 + Database of Genomic Variants: Supporting Structural Var (CNV, Inversion, In/del) 0 2 0 0 0 127 127 127 0 0 0 http://dgv.tcag.ca/dgv/app/variant?id=$$&ref=$D varRep 1 bigDataUrl /gbdb/hg38/dgv/dgvSupporting.bb\ dataVersion 2020-02-25\ filter._size 1:9320633\ filterByRange._size on\ filterLabel._size Genomic size of variant\ filterValues.varType complex,deletion,duplication,gain,gain+loss,insertion,inversion,loss,mobile element insertion,novel sequence insertion,sequence alteration,tandem duplication\ longLabel Database of Genomic Variants: Supporting Structural Var (CNV, Inversion, In/del)\ mouseOver ID:$name; Position; $chrom:${chromStart}-${chromEnd}; Size:$_size; Type:$varType; Affected genes:$genes\ parent dgvPlus\ priority 2\ searchIndex name\ shortLabel DGV Supp Var\ track dgvSupporting\ type bigBed 9 +\ encBlacklist ENCODE Blacklist V2 bigBed 4 ENCODE Blacklist V2 1 2 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/problematic/encBlacklist.bb\ longLabel ENCODE Blacklist V2\ parent problematic\ priority 2\ shortLabel ENCODE Blacklist V2\ track encBlacklist\ type bigBed 4\ visibility dense\ epdNewPromoterNonCoding EPDnew NC v1 bigBed 8 ncRNA promoters from EPDnewNC human version 001 0 2 180 0 134 217 127 194 0 0 0 https://epd.epfl.ch/cgi-bin/get_doc?db=hsNCEpdNew&format=genome&entry=$$ expression 1 bigDataUrl /gbdb/hg38/bbi/epdNewHumanNc001.hg38.bb\ color 180,0,134\ dataVersion EPDNewNC Human Version 001 (April 2019)\ longLabel ncRNA promoters from EPDnewNC human version 001\ parent epdNew on\ priority 2\ shortLabel EPDnew NC v1\ track epdNewPromoterNonCoding\ url https://epd.epfl.ch/cgi-bin/get_doc?db=hsNCEpdNew&format=genome&entry=$$\ missenseByGene Gene Missense bigBed 12 + gnomAD Predicted Missense Constraint Metrics By Gene (Z-scores) v2.1.1 3 2 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/gene/$$?dataset=gnomad_r2_1 varRep 1 bigDataUrl /gbdb/hg38/gnomAD/pLI/missenseByGene.bb\ filter._zscore -19:11\ filterByRange._zscore on\ filterLabel._zscore Show only items between this Z-score range\ labelFields name,geneName\ longLabel gnomAD Predicted Missense Constraint Metrics By Gene (Z-scores) v2.1.1\ mouseOverField _mouseOver\ parent constraintV2 off\ priority 2\ searchIndex name,geneName\ shortLabel Gene Missense\ subGroups view=v2\ track missenseByGene\ type bigBed 12 +\ url https://gnomad.broadinstitute.org/gene/$$?dataset=gnomad_r2_1\ urlLabel View this Gene on the gnomAD browser\ geneHancerGenesDoubleElite GH genes TSS (DE) bigBed 9 GeneCards genes TSS (Double Elite) 3 2 0 0 0 127 127 127 0 0 0 http://www.genecards.org/cgi-bin/carddisp.pl?gene=$$ regulation 1 bigDataUrl /gbdb/hg38/geneHancer/geneHancerGenesTssDoubleElite.hg38.bb\ longLabel GeneCards genes TSS (Double Elite)\ parent ghGeneTss on\ shortLabel GH genes TSS (DE)\ subGroups set=a_ELITE view=b_TSS\ track geneHancerGenesDoubleElite\ type bigBed 9\ gnomadExomesVariantsV2 gnomAD Exome v2 vcfTabix Genome Aggregation Database (gnomAD) Exome Variants v2.1 0 2 0 0 0 127 127 127 0 0 0 varRep 1 bigDataUrl /gbdb/hg38/gnomAD/vcf/gnomad.exomes.r2.1.1.sites.liftover_grch38.vcf.gz\ longLabel Genome Aggregation Database (gnomAD) Exome Variants v2.1\ parent gnomadVariantsV2 on\ priority 2\ shortLabel gnomAD Exome v2\ track gnomadExomesVariantsV2\ gnomadGenomesVariantsV3_1 gnomAD v3.1 bigBed 9 + Genome Aggregation Database (gnomAD) Genome Variants v3.1 0 2 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/variant/$s-$<_startPos>-$-$?dataset=gnomad_r3&ignore=$

Description

\

\ The gnomAD v3.1 track shows variants from 76,156 whole genomes (and no exomes), all mapped to the\ GRCh38/hg38 reference sequence. 4,454 genomes were added to the number of genomes in the previous\ v3 release. For more detailed information on gnomAD v3.1, see the related blog post.

\ \

\ The gnomAD v3.1.1 track contains the same underlying data as v3.1, but\ with minor corrections to the VEP annotations and dbSNP rsIDs. On the UCSC side, we have now\ included the mitochondrial chromosome data that was released as part of gnomAD v3.1 (but after\ the UCSC version of the track was released). For more information about gnomAD v3.1.1, please\ see the related\ changelog.

\ \

GnomAD Genome Mutational Constraint is based on v3.1.2 and is available only on hg38. \ It shows the reduced variation caused by purifying\ natural selection. This is similar to negative selection on loss-of-function\ (LoF) for genes, but can be calculated for non-coding regions too. \ Positive values are red and reflect stronger mutation constraint (and less variation), indicating \ higher natural selection pressure in a region. Negative values are green and \ reflect lower mutation constraint \ (and more variation), indicating less selection pressure and less functional effect.\ Briefly, for any 1kbp window in\ the genome, a model based on trinucleotide sequence context, base-level\ methylation, and regional genomic features predicts expected number of mutations,\ and compares this number to the observed number of mutations using a Z-score (see preprint\ in the Reference section for details). The chrX scores were added as received from the authors,\ as there are no de novo mutation data available on chrX (for estimating the effects of regional \ genomic features on mutation rates), they are more speculative than the ones on the autosomes.

\ \

\ The gnomAD Predicted Constraint Metrics track contains metrics of pathogenicity per-gene as \ predicted for gnomAD v2.1.1 and identifies genes subject to strong selection against various \ classes of mutation. This includes data on both the gene and transcript level.

\ \

\ The gnomAD v2 tracks show variants from 125,748 exomes and 15,708 whole genomes, all mapped to\ the GRCh37/hg19 reference sequence and lifted to the GRCh38/hg38 assembly. The data originate\ from 141,456 unrelated individuals sequenced as part of various population-genetic and\ disease-specific studies\ collected by the Genome Aggregation Database (gnomAD), release 2.1.1.\ Raw data from all studies have been reprocessed through a unified pipeline and jointly\ variant-called to increase consistency across projects. For more information on the processing\ pipeline and population annotations, see the following blog post\ and the 2.1.1 README.

\

\ gnomAD v2 data are based on the GRCh37/hg19 assembly. These tracks display the\ GRCh38/hg38 lift-over provided by gnomAD on their downloads site.\

\ \

\ For questions on the gnomAD data, also see the gnomAD FAQ.

\

\ More details on the Variant type(s) can be found on the Sequence Ontology page.

\ \

Display Conventions and Configuration

\

gnomAD v3.1.1

\

\ The gnomAD v3.1.1 track version follows the same conventions and configuration as the v3.1 track,\ except as noted below.

\ \
    \
  1. There is a Non-cancer filter used to exclude/include variants from samples of individuals who\ were not ascertained for having cancer in a cancer study.\
  2. There are additional FILTER field filters: AS_VQSR, indel_stack (chrM only), and npg (chrM only).\
  3. Where possible, variants overlapping multiple transcripts/genes have been collapsed into one\ variant, with additional information available on the details page, which has roughly halved the\ number of items in the bigBed.\
  4. The bigBed has been split into two files, one with the information necessary for the track\ display, and one with the information necessary for the details page. For more information on\ this data format, please see the Data Access section below.\
  5. The VEP annotation is shown as a table instead of spread across multiple fields.\
  6. Intergenic variants have not been pre-filtered.\
\ \

gnomAD v3.1

\

\ By default, a maximum of 50,000 variants can be displayed at a time (before applying the filters\ described below), before the track switches to dense display mode.\

\ \

\ Mouse hover on an item will display many details about each variant, including the affected gene(s),\ the variant type, and annotation (missense, synonymous, etc).\

\ \

\ Clicking on an item will display additional details on the variant, including a population frequency\ table showing allele count in each sub-population.\

\ \

\ Following the conventions on the gnomAD browser, items are shaded according to their Annotation\ type:\ \ \ \ \ \
pLoF
Missense
Synonymous
Other
\

\ \

Label Options

\

\ To maintain consistency with the gnomAD website, variants are by default labeled according\ to their chromosomal start position followed by the reference and alternate alleles,\ for example "chr1-1234-T-CAG". dbSNP rsID's are also available as an additional\ label, if the variant is present in dbSnp.\

\ \

Filtering Options

\

\ Three filters are available for these tracks:\

\
    \
  • FILTER: Used to exclude/include variants that failed Random Forest\ (RF), Inbreeding Coefficient (Inbreeding Coeff), or Allele Count (AC0) filters. The\ PASS option is used to include/exclude variants that pass all of the RF,\ InbreedingCoeff, and AC0 filters, as denoted in the original VCF.\
  • Annotation type: Used to exclude/include variants that are annotated as\ Probability Loss of Function (pLoF), Missense, Synonymous, or Other, as\ annotated by VEP version 85 (GENCODE v19).\
  • Variant Type: Used to exclude/include variants according to the type of\ variation, as annotated by VEP v85.\
\ There is one additional configurable filter on the minimum minor allele frequency.\ \

gnomAD v2.1.1

\

\ The gnomAD v2.1.1 track follows the standard display and configuration options available for\ VCF tracks, briefly explained below.\

\
    \
  • In mode, a vertical line is drawn at the position of\ each variant.
    • \
  • In mode, "ref" and "alt" alleles are\ displayed to the left of a vertical line with colored portions corresponding to allele counts.\ Hovering the mouse pointer over a variant pops up a display of alleles and counts.
    • \
\ \

Filtering Options

\

\ Four filters are available for these tracks, the same as the underlying VCF:\

    \
  • AC0: Allele Count 0 after filtering out low confidence genotypes (GQ < 20; DP < 10; and AB < 0.2 for het calls))\
  • InbreedingCoeff: Inbreeding Coefficient < -0.3\
  • RF: Used to exclude/include variants that failed Random Forest filtering thresholds of 0.055272738028512555, 0.20641025579497013 (probabilities of being a true positive variant) for SNPs, indels)\
  • Pass: Variant passes all 3 filters\
\

\ \

\ There are two additional filters available, one for the minimum minor allele frequency, and a configurable filter on the QUAL score.\

\ \ \

UCSC Methods

\

\ The gnomAD v3.1.1 data is unfiltered.

\

\ For the v3.1 update only, in order to cut \ down on the amount of displayed data, the following variant\ types have been filtered out, but are still viewable in the gnomAD browser:\

    \
  • Regulatory Region Variants\
  • Downstream/Upstream Gene Variants\
  • Transcription Factor Binding Site Variants\
\

\ \

\ For the full steps used to create the track at UCSC, please see the section\ denoted "gnomAD v3.1 update" in the hg38 makedoc.\

\ \ \

Data Access

\ \

\ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that\ can be downloaded from our download server, subject\ to the conditions set forth by the gnomAD consortium (see below). Variant VCFs can be found in the\ vcf/ subdirectory. The\ v3.1 and\ v3.1.1 variants can\ be found in a special directory as they have been transformed from the underlying VCF.

\ \

\ For the v3.1.1 variants in particular, the underlying bigBed only contains enough information\ necessary to use the track in the browser. The extra data like VEP annotations and CADD scores are\ available in the same directory\ as the bigBed but in the files gnomad.v3.1.1.details.tab.gz and\ gnomad.v3.1.1.details.tab.gz.gzi. The gnomad.v3.1.1.details.tab.gz contains the gzip\ compressed extra data in JSON format, and the .gzi file is available to speed searching of\ this data. Each variant has an associated md5sum in the name field of the bigBed which can be\ used along with the _dataOffset and _dataLen fields to get the associated external data, as show\ below:\ 

\
# find item of interest:\
bigBedToBed genomes.bb stdout | head -4 | tail -1\
chr1    12416    12417    854246d79dc5d02dcdbd5f5438542b6e    [..omitted for brevity..]    chr1-12417-G-A    67293    902\
\
# use the final two fields, _dataOffset and _dataLen (add one to _dataLen to include a newline), to get the extra data:\
bgzip -b 67293 -s 903 gnomad.v3.1.1.details.tab.gz\
854246d79dc5d02dcdbd5f5438542b6e    {"DDX11L1": {"cons": ["non_coding_transcript_variant",  [..omitted for brevity..]\
\ \

\ The data can also be found directly from the gnomAD downloads page. Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.

\ \

The mutational constraints score was updated in October 2022 from a previous,\ now deprecated, pre-publication version. The old version can be found in our\ archive\ directory on the download server. It can be loaded by copying the URL into\ our "Custom tracks" input box.

\ \

Credits

\

\ Thanks to the Genome Aggregation\ Database Consortium for making these data available. The data are released under the ODC Open Database License\ (ODbL) as described here.\

\ \

References

\ \

\ Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alfoldi J, Wang Q, Collins RL, Laricchia KM,\ Ganna A, Birnbaum DP et al.\ Variation across\ 141,456 human exomes and genomes reveals the spectrum of loss-of-function intolerance across human\ protein-coding genes. doi: https://doi.org/10.1101/531210.\

\

\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ Analysis of protein-coding\ genetic variation in 60,706 humans. Nature. 2016 Aug 17;536(7616):285-91.\ PMID: 27535533;\ PMC: PMC5018207\

\

\ Chen S, Francioli L, Goodrich J, Collins R, Wang Q, Alfoldi J, Watts N, Vittal C, Gauthier L, Poterba T, Wilson M\ \ A genome-wide mutational constraint map quantified from variation in 76,156 human genomes. Biorxiv 2022 \

\ varRep 1 bigDataUrl /gbdb/hg38/gnomAD/v3.1/variants/genomes.bb\ dataVersion Release 3.1 (October 29, 2020)\ defaultLabelFields name\ detailsStaticTable Population Frequencies|/gbdb/hg38/gnomAD/v3.1/variants/v3.1.genomes.popTable.txt\ filter.AF 0.0\ filterLabel.AF Minor Allele Frequency Filter\ filterType.FILTER multipleListAnd\ filterType.annot multiple\ filterType.variation_type multipleListOr\ filterValues.FILTER PASS,InbreedingCoeff,RF,AC0\ filterValues.annot pLoF,missense,synonymous,other\ filterValues.variation_type 3_prime_UTR_variant,5_prime_UTR_variant,NMD_transcript_variant,TFBS_ablation,TF_binding_site_variant,coding_sequence_variant,frameshift_variant,incomplete_terminal_codon_variant,inframe_deletion,inframe_insertion,intergenic_variant,intron_variant,mature_miRNA_variant,missense_variant,non_coding_transcript_exon_variant,non_coding_transcript_variant,protein_altering_variant,splice_acceptor_variant,splice_donor_variant,splice_region_variant,start_lost,stop_gained,stop_lost,stop_retained_variant,synonymous_variant,transcript_ablation\ filterValuesDefault.FILTER PASS\ html gnomadV3_1_1\ itemRgb on\ labelFields name,rsId\ longLabel Genome Aggregation Database (gnomAD) Genome Variants v3.1\ maxItems 50000\ mouseOver Position: $chrom:${chromStart}-${chromEnd} ($ref/$alt); Genes: $genes; Type: $annot; Tag: $FILTER; Allele Frequency: $AF ($AC/$AN)\ parent gnomadVariants\ priority 2\ sepFields AC_afr\ shortLabel gnomAD v3.1\ track gnomadGenomesVariantsV3_1\ type bigBed 9 +\ url https://gnomad.broadinstitute.org/variant/$s-$<_startPos>-$-$?dataset=gnomad_r3&ignore=$\ urlLabel View this variant at gnomAD\ visibility hide\ gnomadGenomesVariantsV3_1_1 gnomAD v3.1.1 bigBed 9 + Genome Aggregation Database (gnomAD) Genome Variants v3.1.1 4 2 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/variant/$s-$<_startPos>-$-$?dataset=gnomad_r3&ignore=$

Description

\

\ The gnomAD v3.1 track shows variants from 76,156 whole genomes (and no exomes), all mapped to the\ GRCh38/hg38 reference sequence. 4,454 genomes were added to the number of genomes in the previous\ v3 release. For more detailed information on gnomAD v3.1, see the related blog post.

\ \

\ The gnomAD v3.1.1 track contains the same underlying data as v3.1, but\ with minor corrections to the VEP annotations and dbSNP rsIDs. On the UCSC side, we have now\ included the mitochondrial chromosome data that was released as part of gnomAD v3.1 (but after\ the UCSC version of the track was released). For more information about gnomAD v3.1.1, please\ see the related\ changelog.

\ \

GnomAD Genome Mutational Constraint is based on v3.1.2 and is available only on hg38. \ It shows the reduced variation caused by purifying\ natural selection. This is similar to negative selection on loss-of-function\ (LoF) for genes, but can be calculated for non-coding regions too. \ Positive values are red and reflect stronger mutation constraint (and less variation), indicating \ higher natural selection pressure in a region. Negative values are green and \ reflect lower mutation constraint \ (and more variation), indicating less selection pressure and less functional effect.\ Briefly, for any 1kbp window in\ the genome, a model based on trinucleotide sequence context, base-level\ methylation, and regional genomic features predicts expected number of mutations,\ and compares this number to the observed number of mutations using a Z-score (see preprint\ in the Reference section for details). The chrX scores were added as received from the authors,\ as there are no de novo mutation data available on chrX (for estimating the effects of regional \ genomic features on mutation rates), they are more speculative than the ones on the autosomes.

\ \

\ The gnomAD Predicted Constraint Metrics track contains metrics of pathogenicity per-gene as \ predicted for gnomAD v2.1.1 and identifies genes subject to strong selection against various \ classes of mutation. This includes data on both the gene and transcript level.

\ \

\ The gnomAD v2 tracks show variants from 125,748 exomes and 15,708 whole genomes, all mapped to\ the GRCh37/hg19 reference sequence and lifted to the GRCh38/hg38 assembly. The data originate\ from 141,456 unrelated individuals sequenced as part of various population-genetic and\ disease-specific studies\ collected by the Genome Aggregation Database (gnomAD), release 2.1.1.\ Raw data from all studies have been reprocessed through a unified pipeline and jointly\ variant-called to increase consistency across projects. For more information on the processing\ pipeline and population annotations, see the following blog post\ and the 2.1.1 README.

\

\ gnomAD v2 data are based on the GRCh37/hg19 assembly. These tracks display the\ GRCh38/hg38 lift-over provided by gnomAD on their downloads site.\

\ \

\ For questions on the gnomAD data, also see the gnomAD FAQ.

\

\ More details on the Variant type(s) can be found on the Sequence Ontology page.

\ \

Display Conventions and Configuration

\

gnomAD v3.1.1

\

\ The gnomAD v3.1.1 track version follows the same conventions and configuration as the v3.1 track,\ except as noted below.

\ \
    \
  1. There is a Non-cancer filter used to exclude/include variants from samples of individuals who\ were not ascertained for having cancer in a cancer study.\
  2. There are additional FILTER field filters: AS_VQSR, indel_stack (chrM only), and npg (chrM only).\
  3. Where possible, variants overlapping multiple transcripts/genes have been collapsed into one\ variant, with additional information available on the details page, which has roughly halved the\ number of items in the bigBed.\
  4. The bigBed has been split into two files, one with the information necessary for the track\ display, and one with the information necessary for the details page. For more information on\ this data format, please see the Data Access section below.\
  5. The VEP annotation is shown as a table instead of spread across multiple fields.\
  6. Intergenic variants have not been pre-filtered.\
\ \

gnomAD v3.1

\

\ By default, a maximum of 50,000 variants can be displayed at a time (before applying the filters\ described below), before the track switches to dense display mode.\

\ \

\ Mouse hover on an item will display many details about each variant, including the affected gene(s),\ the variant type, and annotation (missense, synonymous, etc).\

\ \

\ Clicking on an item will display additional details on the variant, including a population frequency\ table showing allele count in each sub-population.\

\ \

\ Following the conventions on the gnomAD browser, items are shaded according to their Annotation\ type:\ \ \ \ \ \
pLoF
Missense
Synonymous
Other
\

\ \

Label Options

\

\ To maintain consistency with the gnomAD website, variants are by default labeled according\ to their chromosomal start position followed by the reference and alternate alleles,\ for example "chr1-1234-T-CAG". dbSNP rsID's are also available as an additional\ label, if the variant is present in dbSnp.\

\ \

Filtering Options

\

\ Three filters are available for these tracks:\

\
    \
  • FILTER: Used to exclude/include variants that failed Random Forest\ (RF), Inbreeding Coefficient (Inbreeding Coeff), or Allele Count (AC0) filters. The\ PASS option is used to include/exclude variants that pass all of the RF,\ InbreedingCoeff, and AC0 filters, as denoted in the original VCF.\
  • Annotation type: Used to exclude/include variants that are annotated as\ Probability Loss of Function (pLoF), Missense, Synonymous, or Other, as\ annotated by VEP version 85 (GENCODE v19).\
  • Variant Type: Used to exclude/include variants according to the type of\ variation, as annotated by VEP v85.\
\ There is one additional configurable filter on the minimum minor allele frequency.\ \

gnomAD v2.1.1

\

\ The gnomAD v2.1.1 track follows the standard display and configuration options available for\ VCF tracks, briefly explained below.\

\
    \
  • In mode, a vertical line is drawn at the position of\ each variant.
    • \
  • In mode, "ref" and "alt" alleles are\ displayed to the left of a vertical line with colored portions corresponding to allele counts.\ Hovering the mouse pointer over a variant pops up a display of alleles and counts.
    • \
\ \

Filtering Options

\

\ Four filters are available for these tracks, the same as the underlying VCF:\

    \
  • AC0: Allele Count 0 after filtering out low confidence genotypes (GQ < 20; DP < 10; and AB < 0.2 for het calls))\
  • InbreedingCoeff: Inbreeding Coefficient < -0.3\
  • RF: Used to exclude/include variants that failed Random Forest filtering thresholds of 0.055272738028512555, 0.20641025579497013 (probabilities of being a true positive variant) for SNPs, indels)\
  • Pass: Variant passes all 3 filters\
\

\ \

\ There are two additional filters available, one for the minimum minor allele frequency, and a configurable filter on the QUAL score.\

\ \ \

UCSC Methods

\

\ The gnomAD v3.1.1 data is unfiltered.

\

\ For the v3.1 update only, in order to cut \ down on the amount of displayed data, the following variant\ types have been filtered out, but are still viewable in the gnomAD browser:\

    \
  • Regulatory Region Variants\
  • Downstream/Upstream Gene Variants\
  • Transcription Factor Binding Site Variants\
\

\ \

\ For the full steps used to create the track at UCSC, please see the section\ denoted "gnomAD v3.1 update" in the hg38 makedoc.\

\ \ \

Data Access

\ \

\ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that\ can be downloaded from our download server, subject\ to the conditions set forth by the gnomAD consortium (see below). Variant VCFs can be found in the\ vcf/ subdirectory. The\ v3.1 and\ v3.1.1 variants can\ be found in a special directory as they have been transformed from the underlying VCF.

\ \

\ For the v3.1.1 variants in particular, the underlying bigBed only contains enough information\ necessary to use the track in the browser. The extra data like VEP annotations and CADD scores are\ available in the same directory\ as the bigBed but in the files gnomad.v3.1.1.details.tab.gz and\ gnomad.v3.1.1.details.tab.gz.gzi. The gnomad.v3.1.1.details.tab.gz contains the gzip\ compressed extra data in JSON format, and the .gzi file is available to speed searching of\ this data. Each variant has an associated md5sum in the name field of the bigBed which can be\ used along with the _dataOffset and _dataLen fields to get the associated external data, as show\ below:\ 

\
# find item of interest:\
bigBedToBed genomes.bb stdout | head -4 | tail -1\
chr1    12416    12417    854246d79dc5d02dcdbd5f5438542b6e    [..omitted for brevity..]    chr1-12417-G-A    67293    902\
\
# use the final two fields, _dataOffset and _dataLen (add one to _dataLen to include a newline), to get the extra data:\
bgzip -b 67293 -s 903 gnomad.v3.1.1.details.tab.gz\
854246d79dc5d02dcdbd5f5438542b6e    {"DDX11L1": {"cons": ["non_coding_transcript_variant",  [..omitted for brevity..]\
\ \

\ The data can also be found directly from the gnomAD downloads page. Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.

\ \

The mutational constraints score was updated in October 2022 from a previous,\ now deprecated, pre-publication version. The old version can be found in our\ archive\ directory on the download server. It can be loaded by copying the URL into\ our "Custom tracks" input box.

\ \

Credits

\

\ Thanks to the Genome Aggregation\ Database Consortium for making these data available. The data are released under the ODC Open Database License\ (ODbL) as described here.\

\ \

References

\ \

\ Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alfoldi J, Wang Q, Collins RL, Laricchia KM,\ Ganna A, Birnbaum DP et al.\ Variation across\ 141,456 human exomes and genomes reveals the spectrum of loss-of-function intolerance across human\ protein-coding genes. doi: https://doi.org/10.1101/531210.\

\

\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ Analysis of protein-coding\ genetic variation in 60,706 humans. Nature. 2016 Aug 17;536(7616):285-91.\ PMID: 27535533;\ PMC: PMC5018207\

\

\ Chen S, Francioli L, Goodrich J, Collins R, Wang Q, Alfoldi J, Watts N, Vittal C, Gauthier L, Poterba T, Wilson M\ \ A genome-wide mutational constraint map quantified from variation in 76,156 human genomes. Biorxiv 2022 \

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Description

\ \

\ The "Constraint scores" container track includes several subtracks showing the results of\ constraint prediction algorithms. These try to find regions of negative\ selection, where variations likely have functional impact. The algorithms do\ not use multi-species alignments to derive evolutionary constraint, but use\ primarily human variation, usually from variants collected by gnomAD (see the\ gnomAD V2 or V3 tracks on hg19 and hg38) or TOPMED (contained in our dbSNP\ tracks and available as a filter). One of the subtracks is based on UK Biobank\ variants, which are not available publicly, so we have no track with the raw data.\ The number of human genomes that are used as the input for these scores are\ 76k, 53k and 110k for gnomAD, TOPMED and UK Biobank, respectively.\

\ \

Note that another important constraint score, gnomAD\ constraint, is not part of this container track but can be found in the hg38 gnomAD\ track.\

\ \ The algorithms included in this track are:\
    \
  1. \ JARVIS - "Junk" Annotation genome-wide Residual Variation Intolerance Score: \ JARVIS scores were created by first scanning the entire genome with a\ sliding-window approach (using a 1-nucleotide step), recording the number of\ all TOPMED variants and common variants, irrespective of their predicted effect,\ within each window, to eventually calculate a single-nucleotide resolution\ genome-wide residual variation intolerance score (gwRVIS). That score, gwRVIS\ was then combined with primary genomic sequence context, and additional genomic\ annotations with a multi-module deep learning framework to infer\ pathogenicity of noncoding regions that still remains naive to existing\ phylogenetic conservation metrics. The higher the score, the more deleterious\ the prediction. This score covers the entire genome, except the gaps.\ \
  2. \ HMC - Homologous Missense Constraint:\ Homologous Missense Constraint (HMC) is a amino acid level measure\ of genetic intolerance of missense variants within human populations.\ For all assessable amino-acid positions in Pfam domains, the number of\ missense substitutions directly observed in gnomAD (Observed) was counted\ and compared to the expected value under a neutral evolution\ model (Expected). The upper limit of a 95% confidence interval for the\ Observed/Expected ratio is defined as the HMC score. Missense variants\ disrupting the amino-acid positions with HMC<0.8 are predicted to be\ likely deleterious. This score only covers PFAM domains within coding regions.\ \
  3. \ MetaDome - Tolerance Landscape Score (hg19 only):\ MetaDome Tolerance Landscape scores are computed as a missense over synonymous \ variant count ratio, which is calculated in a sliding window (with a size of 21 \ codons/residues) to provide \ a per-position indication of regional tolerance to missense variation. The \ variant database was gnomAD and the score corrected for codon composition. Scores \ <0.7 are considered intolerant. This score covers only coding regions.\ \
  4. \ MTR - Missense Tolerance Ratio (hg19 only):\ Missense Tolerance Ratio (MTR) scores aim to quantify the amount of purifying \ selection acting specifically on missense variants in a given window of \ protein-coding sequence. It is estimated across sliding windows of 31 codons \ (default) and uses observed standing variation data from the WES component of \ gnomAD / the Exome Aggregation Consortium Database (ExAC), version 2.0. Scores\ were computed using Ensembl v95 release. The number of gnomAD 2 exomes used here\ is higher than the number of gnomAD 3 samples (125 exoms versus 76k full genomes), \ but this score only covers coding regions.\ \
  5. \ UK Biobank depletion rank score (hg38 only):\ Halldorsson et al. tabulated the number of UK Biobank variants in each\ 500bp window of the genome and compared this number to an expected number\ given the heptamer nucleotide composition of the window and the fraction of\ heptamers with a sequence variant across the genome and their mutational\ classes. A variant depletion score was computed for every overlapping set\ of 500-bp windows in the genome with a 50-bp step size. They then assigned\ a rank (depletion rank (DR)) from 0 (most depletion) to 100 (least\ depletion) for each 500-bp window. Since the windows are overlapping, we\ plot the value only in the central 50bp of the 500bp window, following\ advice from the author of the score,\ Hakon Jonsson, deCODE Genetics. He suggested that the value of the central\ window, rather than the worst possible score of all overlapping windows, is\ the most informative for a position. This score covers almost the entire genome,\ only very few regions were excluded, where the genome sequence had too many gap characters.
\ \

Display Conventions and Configuration

\ \

JARVIS

\

\ JARVIS scores are shown as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The scores were downloaded and converted to a single bigWig file.\ Move the mouse over the bars to display the exact values. A horizontal line is shown at the 0.733\ value which signifies the 90th percentile.

\ See hg19 makeDoc and\ hg38 makeDoc.

\

\ Interpretation: The authors offer a suggested guideline of > 0.9998 for identifying\ higher confidence calls and minimizing false positives. In addition to that strict threshold, the \ following two more relaxed cutoffs can be used to explore additional hits. Note that these\ thresholds are offered as guidelines and are not necessarily representative of pathogenicity.

\ \

\ \ \ \ \ \ \ \ \ \
PercentileJARVIS score threshold
99th0.9998
95th0.9826
90th0.7338
\

\ \

HMC

\

\ HMC scores are displayed as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The highly-constrained cutoff\ of 0.8 is indicated with a line.

\

\ Interpretation: \ A protein residue with HMC score <1 indicates that missense variants affecting\ the homologous residues are significantly under negative selection (P-value <\ 0.05) and likely to be deleterious. A more stringent score threshold of HMC<0.8\ is recommended to prioritize predicted disease-associated variants.\

\ \

MetaDome

\

\ MetaDome data can be found on two tracks, MetaDome and MetaDome All Data.\ The MetaDome track should be used by default for data exploration. In this track\ the raw data containing the MetaDome tolerance scores were converted into a signal ("wiggle")\ track. Since this data was computed on the proteome, there was a small amount of coordinate\ overlap, roughly 0.42%. In these regions the lowest possible score was chosen for display\ in the track to maintain sensitivity. For this reason, if a protein variant is being evaluated,\ the MetaDome All Data track can be used to validate the score. More information\ on this data can be found in the MetaDome FAQ.

\

\ Interpretation: The authors suggest the following guidelines for evaluating\ intolerance. By default, the MetaDome track displays a horizontal line at 0.7 which \ signifies the first intolerant bin. For more information see the MetaDome publication.

\ \

\ \ \ \ \ \ \ \ \ \
ClassificationMetaDome Tolerance Score
Highly intolerant≤ 0.175
Intolerant≤ 0.525
Slightly intolerant≤ 0.7
\

\ \

MTR

\

\ MTR data can be found on two tracks, MTR All data and MTR Scores. In the\ MTR Scores track the data has been converted into 4 separate signal tracks\ representing each base pair mutation, with the lowest possible score shown when\ multiple transcripts overlap at a position. Overlaps can happen since this score\ is derived from transcripts and multiple transcripts can overlap. \ A horizontal line is drawn on the 0.8 score line\ to roughly represent the 25th percentile, meaning the items below may be of particular\ interest. It is recommended that the data be explored using\ this version of the track, as it condenses the information substantially while\ retaining the magnitude of the data.

\ \

Any specific point mutations of interest can then be researched in the \ MTR All data track. This track contains all of the information from\ \ MTRV2 including more than 3 possible scores per base when transcripts overlap.\ A mouse-over on this track shows the ref and alt allele, as well as the MTR score\ and the MTR score percentile. Filters are available for MTR score, False Discovery Rate\ (FDR), MTR percentile, and variant consequence. By default, only items in the bottom\ 25 percentile are shown. Items in the track are colored according\ to their MTR percentile:

\
    \
  • Green items MTR percentiles over 75\
  • Black items MTR percentiles between 25 and 75\
  • Red items MTR percentiles below 25\
  • Blue items No MTR score\
\

\ Interpretation: Regions with low MTR scores were seen to be enriched with\ pathogenic variants. For example, ClinVar pathogenic variants were seen to\ have an average score of 0.77 whereas ClinVar benign variants had an average score\ of 0.92. Further validation using the FATHMM cancer-associated training dataset saw\ that scores less than 0.5 contained 8.6% of the pathogenic variants while only containing\ 0.9% of neutral variants. In summary, lower scores are more likely to represent\ pathogenic variants whereas higher scores could be pathogenic, but have a higher chance\ to be a false positive. For more information see the MTR-Viewer publication.

\ \

Methods

\ \

JARVIS

\

\ Scores were downloaded and converted to a single bigWig file. See the\ hg19 makeDoc and the\ hg38 makeDoc for more info.\

\ \

HMC

\

\ Scores were downloaded and converted to .bedGraph files with a custom Python \ script. The bedGraph files were then converted to bigWig files, as documented in our \ makeDoc hg19 build log.

\ \

MetaDome

\

\ The authors provided a bed file containing codon coordinates along with the scores. \ This file was parsed with a python script to create the two tracks. For the first track\ the scores were aggregated for each coordinate, then the lowest score chosen for any\ overlaps and the result written out to bedGraph format. The file was then converted\ to bigWig with the bedGraphToBigWig utility. For the second track the file\ was reorganized into a bed 4+3 and conveted to bigBed with the bedToBigBed\ utility.

\

\ See the hg19 makeDoc for details including the build script.

\

\ The raw MetaDome data can also be accessed via their Zenodo handle.

\ \

MTR

\

\ V2\ file was downloaded and columns were reshuffled as well as itemRgb added for the\ MTR All data track. For the MTR Scores track the file was parsed with a python\ script to pull out the highest possible MTR score for each of the 3 possible mutations\ at each base pair and 4 tracks built out of these values representing each mutation.

\

\ See the hg19 makeDoc entry on MTR for more info.

\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\

\ \

\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

\ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/hmc/hmc.bw stdout\
\

\ \

\ Please refer to our\ Data Access FAQ\ for more information.\

\ \ \

Credits

\ \

\ Thanks to Jean-Madeleine Desainteagathe (APHP Paris, France) for suggesting the JARVIS, MTR, HMC tracks. Thanks to Xialei Zhang for providing the HMC data file and to Dimitrios Vitsios and Slave Petrovski for helping clean up the hg38 JARVIS files for providing guidance on interpretation. Additional\ thanks to Laurens van de Wiel for providing the MetaDome data as well as guidance on the track development and interpretation. \

\ \

References

\ \

\ Vitsios D, Dhindsa RS, Middleton L, Gussow AB, Petrovski S.\ \ Prioritizing non-coding regions based on human genomic constraint and sequence context with deep\ learning.\ Nat Commun. 2021 Mar 8;12(1):1504.\ PMID: 33686085; PMC: PMC7940646\

\ \

\ Xiaolei Zhang, Pantazis I. Theotokis, Nicholas Li, the SHaRe Investigators, Caroline F. Wright, Kaitlin E. Samocha, Nicola Whiffin, James S. Ware\ \ Genetic constraint at single amino acid resolution improves missense variant prioritisation and gene discovery.\ Medrxiv 2022.02.16.22271023\

\ \

\ Wiel L, Baakman C, Gilissen D, Veltman JA, Vriend G, Gilissen C.\ \ MetaDome: Pathogenicity analysis of genetic variants through aggregation of homologous human protein\ domains.\ Hum Mutat. 2019 Aug;40(8):1030-1038.\ PMID: 31116477; PMC: PMC6772141\

\ \

\ Silk M, Petrovski S, Ascher DB.\ \ MTR-Viewer: identifying regions within genes under purifying selection.\ Nucleic Acids Res. 2019 Jul 2;47(W1):W121-W126.\ PMID: 31170280; PMC: PMC6602522\

\ \

\ Halldorsson BV, Eggertsson HP, Moore KHS, Hauswedell H, Eiriksson O, Ulfarsson MO, Palsson G,\ Hardarson MT, Oddsson A, Jensson BO et al.\ \ The sequences of 150,119 genomes in the UK Biobank.\ Nature. 2022 Jul;607(7920):732-740.\ PMID: 35859178; PMC: PMC9329122\

\ \ phenDis 0 bigDataUrl /gbdb/hg38/hmc/hmc.bw\ color 0,130,0\ html constraintSuper\ longLabel HMC - Homologous Missense Constraint Score on PFAM domains\ maxHeightPixels 128:40:8\ maxWindowToDraw 10000000\ mouseOverFunction noAverage\ parent constraintSuper\ priority 2\ shortLabel HMC\ track hmc\ type bigWig\ viewLimits 0:2\ viewLimitsMax 0:2\ visibility full\ yLineMark 0.8\ yLineOnOff on\ covidHgiGwasB2 Hosp COVID GWAS bigLolly 9 + Hospitalized COVID GWAS from the COVID-19 Host Genetics Initiative (3199 cases, 8 studies) 0 2 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22, varRep 1 bigDataUrl /gbdb/hg38/covidHgiGwas/covidHgiGwasB2.hg38.bb\ longLabel Hospitalized COVID GWAS from the COVID-19 Host Genetics Initiative (3199 cases, 8 studies)\ parent covidHgiGwas off\ shortLabel Hosp COVID GWAS\ track covidHgiGwasB2\ covidHgiGwasR4PvalB2 Hosp COVID vars bigLolly 9 + Hospitalized COVID risk variants from the COVID-19 HGI GWAS Analysis B2 (7885 cases, 21 studies, Rel 4: Oct 2020) 0 2 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22, varRep 1 bigDataUrl /gbdb/hg38/covidHgiGwas/covidHgiGwasR4.B2.hg38.bb\ longLabel Hospitalized COVID risk variants from the COVID-19 HGI GWAS Analysis B2 (7885 cases, 21 studies, Rel 4: Oct 2020)\ parent covidHgiGwasR4Pval on\ priority 2\ shortLabel Hosp COVID vars\ track covidHgiGwasR4PvalB2\ xGen_Research_Targets_V1 IDT xGen V1 T bigBed IDT - xGen Exome Research Panel V1 Target Regions 0 2 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/xgen-exome-research-panel-targets-hg38.bb\ color 100,143,255\ longLabel IDT - xGen Exome Research Panel V1 Target Regions\ parent exomeProbesets off\ shortLabel IDT xGen V1 T\ track xGen_Research_Targets_V1\ type bigBed\ nestedRepeats Interrupted Rpts bed 12 + Fragments of Interrupted Repeats Joined by RepeatMasker ID 0 2 0 0 0 127 127 127 1 0 0

Description

\ \

\ This track shows joined fragments of interrupted repeats extracted\ from the output of the \ RepeatMasker program which screens DNA sequences\ for interspersed repeats and low complexity DNA sequences using the\ \ Repbase Update library of repeats from the\ Genetic\ Information Research Institute (GIRI). Repbase Update is described in\ Jurka (2000) in the References section below.\

\ \

\ The detailed annotations from RepeatMasker are in the RepeatMasker track. This\ track shows fragments of original repeat insertions which have been interrupted\ by insertions of younger repeats or through local rearrangements. The fragments\ are joined using the ID column of RepeatMasker output.\

\ \

Display Conventions and Configuration

\ \

\ In pack or full mode, each interrupted repeat is displayed as boxes\ (fragments) joined by horizontal lines, labeled with the repeat name.\ If all fragments are on the same strand, arrows are added to the\ horizontal line to indicate the strand. In dense or squish mode, labels\ and arrows are omitted and in dense mode, all items are collapsed to\ fit on a single row.\

\ \

\ Items are shaded according to the average identity score of their\ fragments. Usually, the shade of an item is similar to the shades of\ its fragments unless some fragments are much more diverged than\ others. The score displayed above is the average identity score,\ clipped to a range of 50% - 100% and then mapped to the range\ 0 - 1000 for shading in the browser.\

\ \

Methods

\ \

\ UCSC has used the most current versions of the RepeatMasker software\ and repeat libraries available to generate these data. Note that these\ versions may be newer than those that are publicly available on the Internet.\

\ \

\ Data are generated using the RepeatMasker -s flag. Additional flags\ may be used for certain organisms. See the\ FAQ for more information.\

\ \

Credits

\ \

\ Thanks to Arian Smit, Robert Hubley and GIRI for providing the tools and\ repeat libraries used to generate this track.\

\ \

References

\ \

\ Smit AFA, Hubley R, Green P.\ RepeatMasker Open-3.0.\ \ http://www.repeatmasker.org. 1996-2010.\

\ \

\ Repbase Update is described in:\

\ \

\ Jurka J.\ \ Repbase Update: a database and an electronic journal of repetitive elements.\ Trends Genet. 2000 Sep;16(9):418-420.\ PMID: 10973072\

\ \

\ For a discussion of repeats in mammalian genomes, see:\

\ \

\ Smit AF.\ \ Interspersed repeats and other mementos of transposable elements in mammalian genomes.\ Curr Opin Genet Dev. 1999 Dec;9(6):657-63.\ PMID: 10607616\

\ \

\ Smit AF.\ \ The origin of interspersed repeats in the human genome.\ Curr Opin Genet Dev. 1996 Dec;6(6):743-8.\ PMID: 8994846\

\ rep 1 exonNumbers off\ group rep\ longLabel Fragments of Interrupted Repeats Joined by RepeatMasker ID\ priority 2\ shortLabel Interrupted Rpts\ track nestedRepeats\ type bed 12 +\ useScore 1\ visibility hide\ jaspar2022 JASPAR 2022 TFBS bigBed 6 + JASPAR CORE 2022 - Predicted Transcription Factor Binding Sites 0 2 0 0 0 127 127 127 1 0 0 http://jaspar.genereg.net/search?q=$$&collection=all&tax_group=all&tax_id=all&type=all&class=all&family=all&version=all regulation 1 bigDataUrl /gbdb/hg38/jaspar/JASPAR2022.bb\ filterValues.TFName Ahr::Arnt,Alx1,ALX3,Alx4,Ar,ARGFX,Arid3a,Arid3b,Arid5a,Arnt,ARNT2,ARNT::HIF1A,Arntl,Arx,ASCL1,Ascl2,Atf1,ATF2,Atf3,ATF3,ATF4,ATF6,ATF7,Atoh1,ATOH7,BACH1,Bach1::Mafk,BACH2,BARHL1,BARHL2,BARX1,BARX2,BATF,BATF3,BATF::JUN,Bcl11B,BCL6,BCL6B,Bhlha15,BHLHA15,BHLHE22,BHLHE23,BHLHE40,BHLHE41,BNC2,BSX,CDX1,CDX2,CDX4,CEBPA,CEBPB,CEBPD,CEBPE,CEBPG,CLOCK,CREB1,CREB3,CREB3L1,Creb3l2,CREB3L4,Creb5,CREM,Crx,CTCF,CTCFL,CUX1,CUX2,DBP,Ddit3::Cebpa,DLX1,Dlx2,Dlx3,Dlx4,Dlx5,DLX6,Dmbx1,Dmrt1,DMRT3,DMRTA1,DMRTA2,DMRTC2,DPRX,DRGX,Dux,DUX4,DUXA,E2F1,E2F2,E2F3,E2F4,E2F6,E2F7,E2F8,EBF1,Ebf2,EBF3,EGR1,EGR2,EGR3,EGR4,EHF,ELF1,ELF2,ELF3,ELF4,Elf5,ELK1,ELK1::HOXA1,ELK1::HOXB13,ELK1::SREBF2,ELK3,ELK4,EMX1,EMX2,EN1,EN2,EOMES,ERF,ERF::FIGLA,ERF::FOXI1,ERF::FOXO1,ERF::HOXB13,ERF::NHLH1,ERF::SREBF2,Erg,ESR1,ESR2,ESRRA,ESRRB,Esrrg,ESX1,ETS1,ETS2,ETV1,ETV2,ETV2::DRGX,ETV2::FIGLA,ETV2::FOXI1,ETV2::HOXB13,ETV3,ETV4,ETV5,ETV5::DRGX,ETV5::FIGLA,ETV5::FOXI1,ETV5::FOXO1,ETV5::HOXA2,ETV6,ETV7,EVX1,EVX2,EWSR1-FLI1,FERD3L,FEV,FIGLA,FLI1,FLI1::DRGX,FLI1::FOXI1,FOS,FOSB::JUN,FOSB::JUNB,FOS::JUN,FOS::JUNB,FOS::JUND,FOSL1,FOSL1::JUN,FOSL1::JUNB,FOSL1::JUND,FOSL2,FOSL2::JUN,FOSL2::JUNB,FOSL2::JUND,FOXA1,FOXA2,FOXA3,FOXB1,FOXC1,FOXC2,FOXD1,FOXD2,FOXD3,FOXE1,Foxf1,FOXF2,FOXG1,FOXH1,FOXI1,Foxj2,FOXJ2::ELF1,Foxj3,FOXK1,FOXK2,FOXL1,Foxl2,Foxn1,FOXN3,Foxo1,FOXO1::ELF1,FOXO1::ELK1,FOXO1::ELK3,FOXO1::FLI1,Foxo3,FOXO4,FOXO6,FOXP1,FOXP2,FOXP3,Foxq1,GABPA,GATA1,GATA1::TAL1,GATA2,Gata3,GATA4,GATA5,GATA6,GBX1,GBX2,GCM1,GCM2,GFI1,Gfi1B,Gli1,Gli2,GLI3,GLIS1,GLIS2,GLIS3,Gmeb1,GMEB2,GRHL1,GRHL2,GSC,GSC2,GSX1,GSX2,Hand1::Tcf3,HAND2,HES1,HES2,HES5,HES6,HES7,HESX1,HEY1,HEY2,Hic1,HIC2,HIF1A,HINFP,HLF,HMBOX1,Hmx1,Hmx2,Hmx3,Hnf1A,HNF1A,HNF1B,HNF4A,HNF4G,HOXA1,HOXA10,Hoxa11,Hoxa13,HOXA2,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,HOXB13,HOXB2,HOXB2::ELK1,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC8,HOXC9,HOXD10,HOXD11,HOXD12,HOXD12::ELK1,Hoxd13,HOXD3,HOXD4,HOXD8,HOXD9,HSF1,HSF2,HSF4,IKZF1,Ikzf3,INSM1,Irf1,IRF2,IRF3,IRF4,IRF5,IRF6,IRF7,IRF8,IRF9,Isl1,ISL2,ISX,JDP2,Jun,JUN,JUNB,JUND,JUN::JUNB,KLF1,KLF10,KLF11,KLF12,KLF13,KLF14,KLF15,KLF16,KLF17,KLF2,KLF3,KLF4,KLF5,KLF6,KLF7,KLF9,LBX1,LBX2,Lef1,Lhx1,LHX2,Lhx3,Lhx4,LHX5,LHX6,Lhx8,LHX9,LIN54,LMX1A,LMX1B,MAF,MAFA,Mafb,MAFF,Mafg,MAFG::NFE2L1,MAFK,MAF::NFE2,MAX,MAX::MYC,MAZ,Mecom,MEF2A,MEF2B,MEF2C,MEF2D,MEIS1,MEIS2,MEIS3,MEOX1,MEOX2,MGA,MGA::EVX1,MITF,mix-a,MIXL1,MLX,Mlxip,MLXIPL,MNT,MNX1,MSANTD3,MSC,Msgn1,MSX1,MSX2,Msx3,MTF1,MXI1,MYB,MYBL1,MYBL2,MYC,MYCN,MYF5,MYF6,MYOD1,MYOG,MZF1,NEUROD1,Neurod2,NEUROG1,NEUROG2,Nfat5,Nfatc1,Nfatc2,NFATC3,NFATC4,NFE2,Nfe2l2,NFIA,NFIB,NFIC,NFIC::TLX1,NFIL3,NFIX,NFKB1,NFKB2,NFYA,NFYB,NFYC,NHLH1,NHLH2,Nkx2-1,NKX2-2,NKX2-3,NKX2-4,NKX2-5,NKX2-8,Nkx3-1,Nkx3-2,NKX6-1,NKX6-2,NKX6-3,Nobox,NOTO,Npas2,Npas4,NR1D1,NR1D2,Nr1H2,NR1H2::RXRA,Nr1h3::Rxra,Nr1H4,NR1H4::RXRA,NR1I2,NR1I3,NR2C1,NR2C2,Nr2e1,Nr2e3,NR2F1,NR2F2,Nr2f6,Nr2F6,NR2F6,NR3C1,NR3C2,NR4A1,NR4A2,NR4A2::RXRA,NR5A1,Nr5A2,NR6A1,Nrf1,NRL,OLIG1,Olig2,OLIG2,OLIG3,ONECUT1,ONECUT2,ONECUT3,OSR1,OSR2,OTX1,OTX2,OVOL1,OVOL2,PATZ1,PAX1,PAX2,PAX3,PAX4,PAX5,PAX6,Pax7,PAX9,PBX1,PBX2,PBX3,PDX1,PHOX2A,PHOX2B,PITX1,PITX2,PITX3,PKNOX1,PKNOX2,PLAG1,Plagl1,PLAGL2,POU1F1,POU2F1,POU2F1::SOX2,POU2F2,POU2F3,POU3F1,POU3F2,POU3F3,POU3F4,POU4F1,POU4F2,POU4F3,POU5F1,POU5F1B,Pou5f1::Sox2,POU6F1,POU6F2,PPARA::RXRA,PPARD,PPARG,Pparg::Rxra,PRDM1,Prdm14,Prdm15,Prdm4,Prdm5,PRDM9,PROP1,PROX1,PRRX1,PRRX2,Ptf1a,Ptf1A,RARA,RARA::RXRA,RARA::RXRG,Rarb,RARB,Rarg,RARG,RAX,RAX2,RBPJ,Rbpjl,REL,RELA,RELB,REST,RFX1,RFX2,RFX3,RFX4,RFX5,Rfx6,RFX7,Rhox11,RHOXF1,RORA,RORB,RORC,RREB1,Runx1,RUNX2,RUNX3,Rxra,RXRA::VDR,RXRB,RXRG,SATB1,SCRT1,SCRT2,Sf1,SHOX,Shox2,SIX1,SIX2,Six3,Six4,SMAD2,Smad2::Smad3,SMAD2::SMAD3::SMAD4,SMAD3,Smad4,SMAD5,SNAI1,SNAI2,SNAI3,SOHLH2,Sox1,SOX10,Sox11,SOX12,SOX13,SOX14,SOX15,Sox17,SOX18,SOX2,SOX21,Sox3,SOX4,Sox5,Sox6,SOX8,SOX9,SP1,SP2,SP3,SP4,SP5,SP8,SP9,SPDEF,Spi1,SPIB,SPIC,Spz1,SREBF1,SREBF2,SRF,SRY,STAT1,STAT1::STAT2,Stat2,STAT3,Stat4,Stat5a,Stat5a::Stat5b,Stat5b,Stat6,TAL1::TCF3,TBP,TBR1,TBX1,TBX15,TBX18,TBX19,TBX2,TBX20,TBX21,TBX3,TBX4,TBX5,Tbx6,TBXT,Tcf12,TCF12,Tcf21,TCF21,TCF3,TCF4,TCF7,TCF7L1,TCF7L2,TCFL5,TEAD1,TEAD2,TEAD3,TEAD4,TEF,TFAP2A,TFAP2B,TFAP2C,TFAP2E,TFAP4,TFAP4::ETV1,TFAP4::FLI1,TFCP2,Tfcp2l1,TFDP1,TFE3,TFEB,TFEC,TGIF1,TGIF2,TGIF2LX,TGIF2LY,THAP1,Thap11,THRA,THRB,TLX2,TP53,TP63,TP73,TRPS1,TWIST1,Twist2,UNCX,USF1,USF2,VAX1,VAX2,Vdr,VENTX,VEZF1,VSX1,VSX2,Wt1,XBP1,Yy1,YY2,ZBED1,ZBED2,ZBTB12,ZBTB14,ZBTB18,ZBTB26,ZBTB32,ZBTB33,ZBTB6,ZBTB7A,ZBTB7B,ZBTB7C,ZEB1,ZFP14,Zfp335,ZFP42,ZFP57,Zfx,ZIC1,Zic1::Zic2,Zic2,Zic3,ZIC4,ZIC5,ZIM3,ZKSCAN1,ZKSCAN3,ZKSCAN5,ZNF135,ZNF136,ZNF140,ZNF143,ZNF148,ZNF16,ZNF189,ZNF211,ZNF214,ZNF24,ZNF257,ZNF263,ZNF274,ZNF281,ZNF282,ZNF317,ZNF320,ZNF324,ZNF331,ZNF341,ZNF343,ZNF354A,ZNF354C,ZNF382,ZNF384,ZNF410,ZNF416,ZNF417,ZNF418,Znf423,ZNF449,ZNF454,ZNF460,ZNF528,ZNF530,ZNF549,ZNF574,ZNF582,ZNF610,ZNF652,ZNF667,ZNF669,ZNF675,ZNF680,ZNF682,ZNF684,ZNF692,ZNF701,ZNF707,ZNF708,ZNF740,ZNF75D,ZNF76,ZNF768,ZNF784,ZNF8,ZNF816,ZNF85,ZNF93,ZSCAN29,ZSCAN31,ZSCAN4\ labelFields TFName\ longLabel JASPAR CORE 2022 - Predicted Transcription Factor Binding Sites\ motifPwmTable hgFixed.jasparCore2022\ parent jaspar off\ priority 2\ shortLabel JASPAR 2022 TFBS\ track jaspar2022\ type bigBed 6 +\ visibility hide\ lovdLong LOVD Variants >= 50 bp bigBed 9 + Leiden Open Variation Database Public Variants, long >= 50 bp variants 0 2 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg38/lovd/lovd.hg38.long.bb\ group phenDis\ longLabel Leiden Open Variation Database Public Variants, long >= 50 bp variants\ mergeSpannedItems on\ noScoreFilter on\ parent lovdComp\ shortLabel LOVD Variants >= 50 bp\ track lovdLong\ type bigBed 9 +\ urls id="https://varcache.lovd.nl/redirect/$$"\ visibility hide\ tgpNA19675_m004_MXL m004 MXL Trio vcfPhasedTrio 1000 Genomes m004 Mexican Ancestry from Los Angeles Trio 2 2 0 0 0 127 127 127 0 0 23 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX, varRep 0 longLabel 1000 Genomes m004 Mexican Ancestry from Los Angeles Trio\ parent tgpTrios\ shortLabel m004 MXL Trio\ track tgpNA19675_m004_MXL\ type vcfPhasedTrio\ vcfChildSample NA19675|child\ vcfParentSamples NA19678|mother,NA19679|father\ visibility full\ MaxCounts_Rev Max counts of CAGE reads (rev) bigWig Max counts of CAGE reads reverse 2 2 0 0 255 127 127 255 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ctssMaxCounts.rev.bw\ color 0,0,255\ dataVersion FANTOM5 reprocessed7\ longLabel Max counts of CAGE reads reverse\ parent Max_counts_multiwig\ shortLabel Max counts of CAGE reads (rev)\ subGroups category=max strand=reverse\ track MaxCounts_Rev\ type bigWig\ revelC Mutation: C bigWig REVEL: Mutation is C 1 2 150 80 200 202 167 227 0 0 0 phenDis 0 bigDataUrl /gbdb/hg38/revel/c.bw\ longLabel REVEL: Mutation is C\ maxHeightPixels 128:20:8\ maxWindowToDraw 10000000\ maxWindowToQuery 500000\ mouseOverFunction noAverage\ parent revel on\ shortLabel Mutation: C\ track revelC\ type bigWig\ viewLimits 0:1.0\ viewLimitsMax 0:1.0\ visibility dense\ caddC Mutation: C bigWig CADD 1.6 Score: Mutation is C 1 2 100 130 160 177 192 207 0 0 0 phenDis 0 bigDataUrl /gbdb/hg38/cadd/c.bw\ longLabel CADD 1.6 Score: Mutation is C\ maxHeightPixels 128:20:8\ parent cadd on\ shortLabel Mutation: C\ track caddC\ type bigWig\ viewLimits 10:50\ viewLimitsMax 0:100\ visibility dense\ platinumNA12877 NA12877 vcfTabix Platinum genome variant NA12877 3 2 0 0 0 127 127 127 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 1 bigDataUrl /gbdb/hg38/platinumGenomes/NA12877.vcf.gz\ chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX\ configureByPopup off\ group varRep\ longLabel Platinum genome variant NA12877\ maxWindowToDraw 200000\ parent platinumGenomes\ shortLabel NA12877\ showHardyWeinberg on\ track platinumNA12877\ type vcfTabix\ vcfDoFilter off\ vcfDoMaf off\ visibility pack\ refSeqComposite NCBI RefSeq genePred RefSeq genes from NCBI 1 2 0 0 0 127 127 127 0 0 0

Description

\

\ The NCBI RefSeq Genes composite track shows human protein-coding and non-protein-coding\ genes taken from the NCBI RNA reference sequences collection (RefSeq). All subtracks use\ coordinates provided by RefSeq, except for the UCSC RefSeq track, which UCSC produces by\ realigning the RefSeq RNAs to the genome. This realignment may result in occasional differences\ between the annotation coordinates provided by UCSC and NCBI. For RNA-seq analysis, we advise\ using NCBI aligned tables like RefSeq All or RefSeq Curated. See the \ Methods section for more details about how the different tracks were \ created.

\

\ Please visit NCBI's Feedback for Gene and Reference Sequences (RefSeq) page to make suggestions, \ submit additions and corrections, or ask for help concerning RefSeq records.

\ \

\ For more information on the different gene tracks, see our Genes FAQ.

\ \

Display Conventions and Configuration

\

\ This track is a composite track that contains differing data sets.\ To show only a selected set of subtracks, uncheck the boxes next to the tracks that you wish to \ hide. Note: Not all subtracts are available on all assemblies.

\ \ The possible subtracks include:\
\
RefSeq aligned annotations and UCSC alignment of RefSeq annotations\
\
    \
  • \ RefSeq All – all curated and predicted annotations provided by \ RefSeq.
    • \
  • \ RefSeq Curated – subset of RefSeq All that includes only those \ annotations whose accessions begin with NM, NR, NP or YP. (NP and YP are used only for\ protein-coding genes on the mitochondrion; YP is used for human only.)
    • \
  • \ RefSeq Predicted – subset of RefSeq All that includes those annotations whose \ accessions begin with XM or XR.
    • \
  • \ RefSeq Other – all other annotations produced by the RefSeq group that \ do not fit the requirements for inclusion in the RefSeq Curated or the \ RefSeq Predicted tracks, as they do not have a product and therefore no RefSeq accession.\ More than 90% are pseudogenes, T-cell receptor or immunoglobulin segments.\ The few remaining entries are gene clusters (e.g. protocadherin).
    • \
  • \ RefSeq Alignments – alignments of RefSeq RNAs to the human genome provided\ by the RefSeq group, following the display conventions for\ PSL tracks.
    • \
  • \ RefSeq Diffs – alignment differences between the human reference genome(s) \ and RefSeq transcripts. (Track not currently available for every assembly.)\
    • \
  • \ UCSC RefSeq – annotations generated from UCSC's realignment of RNAs with NM \ and NR accessions to the human genome. This track was previously known as the "RefSeq \ Genes" track.
    • \
  • \ RefSeq Select+MANE (subset) – Subset of RefSeq Curated, transcripts marked as \ RefSeq Select or MANE Select. \ A single Select transcript is chosen as representative for each protein-coding gene. \ This track includes transcripts categorized as MANE, which are further agreed upon as \ representative by both NCBI RefSeq and Ensembl/GENCODE, and have a 100% identical match \ to a transcript in the Ensembl annotation. See NCBI RefSeq Select. \ Note that we provide a separate track, MANE (hg38), \ which contains only the MANE transcripts.\
    • \
  • \ RefSeq HGMD (subset) – Subset of RefSeq Curated, transcripts annotated by the Human\ Gene Mutation Database. This track is only available on the human genomes hg19 and hg38.\ It is the most restricted RefSeq subset, targeting clinical diagnostics.\
    • \
\
\ \

\ The RefSeq All, RefSeq Curated, RefSeq Predicted, RefSeq HGMD,\ RefSeq Select/MANE and UCSC RefSeq tracks follow the display conventions for\ gene prediction tracks.\ The color shading indicates the level of review the RefSeq record has undergone:\ predicted (light), provisional (medium), or reviewed (dark), as defined by RefSeq.

\ \

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
ColorLevel of review
Reviewed: the RefSeq record has been reviewed by NCBI staff or by a collaborator. The NCBI review process includes assessing available sequence data and the literature. Some RefSeq records may incorporate expanded sequence and annotation information.
Provisional: the RefSeq record has not yet been subject to individual review. The initial sequence-to-gene association has been established by outside collaborators or NCBI staff.
Predicted: the RefSeq record has not yet been subject to individual review, and some aspect of the RefSeq record is predicted.
\

\ \

\ The item labels and codon display properties for features within this track can be configured \ through the check-box controls at the top of the track description page. To adjust the settings \ for an individual subtrack, click the wrench icon next to the track name in the subtrack list .

\
    \
  • \ Label: By default, items are labeled by gene name. Click the appropriate Label \ option to display the accession name or OMIM identifier instead of the gene name, show all or a \ subset of these labels including the gene name, OMIM identifier and accession names, or turn off \ the label completely.
    • \
  • \ Codon coloring: This track has an optional codon coloring feature that \ allows users to quickly validate and compare gene predictions. To display codon colors, select the\ genomic codons option from the Color track by codons pull-down menu. For more \ information about this feature, go to the Coloring Gene Predictions and Annotations by Codon page.
    • \
\ \

The RefSeq Diffs track contains five different types of inconsistency between the\ reference genome sequence and the RefSeq transcript sequences. The five types of differences are\ as follows:\

    \
  • \ mismatch – aligned but mismatching bases, plus HGVS g. \ to show the genomic change required to match the transcript and HGVS c./n. \ to show the transcript change required to match the genome.
    • \
  • \ short gap – genomic gaps that are too small to be introns (arbitrary cutoff of\ \ < 45 bp), most likely insertions/deletion variants or errors, with HGVS g. and c./n. \ \ showing differences.
    • \
  • \ shift gap – shortGap items whose placement could be shifted left and/or right on\ \ the genome due to repetitive sequence, with HGVS c./n. position range of ambiguous region \ \ in transcript. Here, thin and thick lines are used -- the thin line shows the span of the\ \ repetitive sequence, and the thick line shows the rightmost shifted gap.\
    • \
  • \ double gap – genomic gaps that are long enough to be introns but that skip over \ \ transcript sequence (invisible in default setting), with HGVS c./n. deletion.
    • \
  • \ skipped – sequence at the beginning or end of a transcript that is not aligned to\ the genome\ (invisible in default setting), with HGVS c./n. deletion
    • \ \
\ \ HGVS Terminology (Human Genome Variation Society):\ \ g. = genomic sequence ; c. = coding DNA sequence ; n. = non-coding RNA reference sequence.\

\ \

\ When reporting HGVS with RefSeq sequences, to make sure that results from\ research articles can be mapped to the genome unambiguously, \ please specify the RefSeq annotation release displayed on the transcript's\ Genome Browser details page and also the RefSeq transcript ID with version\ (e.g. NM_012309.4 not NM_012309). \

\ \ \ \

Methods

\

\ Tracks contained in the RefSeq annotation and RefSeq RNA alignment tracks were created at UCSC using \ data from the NCBI RefSeq project. Data files were downloaded from RefSeq in GFF file format and \ converted to the genePred and PSL table formats for display in the Genome Browser. Information about\ the NCBI annotation pipeline can be found \ here.

\ \

The RefSeq Diffs track is generated by UCSC using NCBI's RefSeq RNA alignments.

\

\ The UCSC RefSeq Genes track is constructed using the same methods as previous RefSeq Genes tracks.\ RefSeq RNAs were aligned against the human genome using BLAT. Those with an alignment of\ less than 15% were discarded. When a single RNA aligned in multiple places, the alignment\ having the highest base identity was identified. Only alignments having a base identity\ level within 0.1% of the best and at least 96% base identity with the genomic sequence were\ kept.

\ \

Data Access

\

\ The raw data for these tracks can be accessed in multiple ways. It can be explored interactively \ using the REST API,\ Table Browser or\ Data Integrator. The tables can also be accessed programmatically through our\ public MySQL server or downloaded from our\ downloads server for local processing. The previous track versions are available\ in the archives of our downloads server. You can also access any RefSeq table\ entries in JSON format through our \ JSON API.

\

\ The data in the RefSeq Other and RefSeq Diffs tracks are organized in \ bigBed file format; more\ information about accessing the information in this bigBed file can be found\ below. The other subtracks are associated with database tables as follows:

\
\
genePred format:
\
    \
  • RefSeq All - ncbiRefSeq
    • \
  • RefSeq Curated - ncbiRefSeqCurated
    • \
  • RefSeq Predicted - ncbiRefSeqPredicted
    • \
  • RefSeq HGMD - ncbiRefSeqHgmd
    • \
  • RefSeq Select+MANE - ncbiRefSeqSelect
    • \
  • UCSC RefSeq - refGene
    • \
\
PSL format:
\
    \ \
  • RefSeq Alignments - ncbiRefSeqPsl
    • \
\
\

\ The first column of each of these tables is "bin". This column is designed\ to speed up access for display in the Genome Browser, but can be safely ignored in downstream\ analysis. You can read more about the bin indexing system\ here.

\

\ The annotations in the RefSeqOther and RefSeqDiffs tracks are stored in bigBed \ files, which can be obtained from our downloads server here,\ ncbiRefSeqOther.bb and \ ncbiRefSeqDiffs.bb.\ Individual regions or the whole set of genome-wide annotations can be obtained using our tool\ bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system from the utilities directory linked below. For example, to extract only\ annotations in a given region, you could use the following command:

\

\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/ncbiRefSeq/ncbiRefSeqOther.bb\ -chrom=chr16 -start=34990190 -end=36727467 stdout

\

\ You can download a GTF format version of the RefSeq All table from the \ GTF downloads directory.\ The genePred format tracks can also be converted to GTF format using the\ genePredToGtf utility, available from the\ utilities directory on the UCSC downloads \ server. The utility can be run from the command line like so:

\ genePredToGtf hg38 ncbiRefSeqPredicted ncbiRefSeqPredicted.gtf\

\ Note that using genePredToGtf in this manner accesses our public MySQL server, and you therefore \ must set up your hg.conf as described on the MySQL page linked near the beginning of the Data Access\ section.

\

\ A file containing the RNA sequences in FASTA format for all items in the RefSeq All, RefSeq Curated, \ and RefSeq Predicted tracks can be found on our downloads server\ here.

\

\ Please refer to our mailing list archives for questions.

\ \

\ Previous versions of the ncbiRefSeq set of tracks can be found on our archive download server.\

\ \

Credits

\

\ This track was produced at UCSC from data generated by scientists worldwide and curated by the\ NCBI RefSeq project.

\ \

References

\

\ Kent WJ.\ BLAT - the BLAST-like \ alignment tool. Genome Res. 2002 Apr;12(4):656-64.\ PMID: 11932250; PMC: PMC187518

\

\ Pruitt KD, Brown GR, Hiatt SM, Thibaud-Nissen F, Astashyn A, Ermolaeva O, Farrell CM, Hart J,\ Landrum MJ, McGarvey KM et al.\ RefSeq: an update on mammalian reference sequences.\ Nucleic Acids Res. 2014 Jan;42(Database issue):D756-63.\ PMID: 24259432; PMC: \ PMC3965018

\

\ Pruitt KD, Tatusova T, Maglott DR.\ \ NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts \ and proteins.\ Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.\ PMID: 15608248; PMC: PMC539979

\ genes 1 allButtonPair on\ compositeTrack on\ dataVersion /gbdb/$D/ncbiRefSeq/ncbiRefSeqVersion.txt\ dbPrefixLabels hg="HGNC" dm="FlyBase" ce="WormBase" rn="RGD" sacCer="SGD" danRer="ZFIN" mm="MGI" xenTro="XenBase"\ dbPrefixUrls hg="http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" dm="http://flybase.org/reports/$$" ce="http://www.wormbase.org/db/gene/gene?name=$$" rn="https://rgd.mcw.edu/rgdweb/search/search.html?term=$$" sacCer="https://www.yeastgenome.org/locus/$$" danRer="https://zfin.org/$$" mm="http://www.informatics.jax.org/marker/$$" xenTro="https://www.xenbase.org/gene/showgene.do?method=display&geneId=$$"\ dragAndDrop subTracks\ group genes\ longLabel RefSeq genes from NCBI\ noInherit on\ priority 2\ shortLabel NCBI RefSeq\ track refSeqComposite\ type genePred\ visibility dense\ chainHg19ReMap NCBI ReMap hg19 chain hg19 NCBI ReMap alignments to hg19/GRCh37 0 2 0 0 0 127 127 127 0 0 0 map 1 chainLinearGap medium\ chainMinScore 3000\ longLabel NCBI ReMap alignments to hg19/GRCh37\ matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91\ matrixHeader A, C, G, T\ otherDb hg19\ parent liftHg19\ priority 2\ shortLabel NCBI ReMap hg19\ track chainHg19ReMap\ type chain hg19\ panelAppGenes PanelApp Genes bigBed 9 + Genomics England PanelApp Genes 3 2 0 0 0 127 127 127 0 0 0 https://panelapp.genomicsengland.co.uk/panels/$/gene/$/ phenDis 1 bigDataUrl /gbdb/hg38/panelApp/genes.bb\ filterValues.confidenceLevel 3,2,1,0\ itemRgb on\ labelFields geneSymbol\ longLabel Genomics England PanelApp Genes\ mouseOverField mouseOverField\ parent panelApp on\ shortLabel PanelApp Genes\ skipEmptyFields on\ skipFields chrom,chromStart,blockStarts,blockSizes,entityName,tags,status,mouseOverField\ track panelAppGenes\ type bigBed 9 +\ url https://panelapp.genomicsengland.co.uk/panels/$/gene/$/\ urlLabel Link to PanelApp\ urls omimGene="https://www.omim.org/entry/$$" ensemblGenes="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" geneSymbol="https://panelapp.genomicsengland.co.uk/panels/entities/$$"\ visibility pack\ pTriplo pTriplosensitivity bigBed 9 + 2 Probability of triplosensitivity 3 2 0 0 0 127 127 127 0 0 0 https://www.deciphergenomics.org/search?q=$$ phenDis 1 bigDataUrl /gbdb/hg38/bbi/dosageSensitivityCollins2022/pTriploDosageSensitivity.bb\ filter.pTriplo 0\ filterByRange.pTriplo on\ filterLimits.pTriplo 0:1\ itemRgb on\ longLabel Probability of triplosensitivity\ mouseOver $name, $ensGene, pTriplo:$pTriplo\ parent dosageSensitivity on\ shortLabel pTriplosensitivity\ showCfg on\ track pTriplo\ type bigBed 9 + 2\ url https://www.deciphergenomics.org/search?q=$$\ urlLabel Link to DECIPHER\ visibility pack\ recombPat Recomb. deCODE Pat bigWig Recombination rate: deCODE Genetics, paternal 2 2 0 130 0 127 192 127 0 0 0

Description

\

\ The recombination rate track represents calculated rates of recombination based\ on the genetic maps from deCODE (Halldorsson et al., 2019) and 1000 Genomes\ (2013 Phase 3 release, lifted from hg19). The deCODE map is more recent, has a higher \ resolution and was natively created on hg38 and therefore recommended. \ For the Recomb. deCODE average track, the recombination rates for chrX represent the female rate.\

\ \

This track also includes a subtrack with all the\ individual deCODE recombination events and another subtrack with several thousand\ de-novo mutations found in the deCODE sequencing data. These two tracks are hidden by\ default and have to be switched on explicitly on the configuration page.\

\ \

Display Conventions and Configuration

\

\ This is a super track that contains different subtracks, three with the deCODE\ recombination rates (paternal, maternal and average) and one with the 1000\ Genomes recombination rate (average). These tracks are in \ signal graph\ (wiggle) format. By default, to show most recombination hotspots, their maximum\ value is set to 100 cM, even though many regions have values higher than 100.\ The maximum value can be changed on the configuration pages of the tracks.\

\ \

\ There are two more tracks that show additional details provided by deCODE: one\ subtrack with the raw data of all cross-overs tagged with their proband ID and\ another one with around 8000 human de-novo mutation variants that are linked to\ cross-over changes.\

\ \

Methods

\

\ The deCODE genetic map was created at \ deCODE Genetics. It is based \ on microarrays assaying 626,828 SNP markers that allowed to identify 1,476,140 crossovers in\ 56,321 paternal meioses and 3,055,395 crossovers in 70,086 maternal meioses.\ In total, the data is based on 4,531,535 crossovers in 126,427 meioses. By\ using WGS data with 9,305,070 SNPs, the boundaries for 761,981 crossovers were\ refined: 247,942 crossovers in 9423 paternal meioses and 514,039 crossovers in\ 11,750 maternal meioses. The average resolution of the genetic map is 682 base\ pairs (bp): 655 and 708 bp for the paternal and maternal maps, respectively.\

\ \

The 1000 Genomes genetic map is based on the IMPUTE genetic map based on 1000 Genomes Phase 3, on hg19 coordinates. It\ was converted to hg38 by Po-Ru Loh at the Broad Institute. After a run of \ liftOver, he post-processed the data to deal with situations in which\ consecutive map locations became much closer/farther after lifting. The\ heuristic used is sufficient for statistical phasing but may not be optimal for\ other analyses. For this reason, and because of its higher resolution, the DeCODE\ map is therefore recommended for hg38.\

\ \

As with all other tracks, the data conversion commands and pointers to the\ original data files are documented in the \ makeDoc file of this track.

\ \

Data Access

\

\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\

\ \

\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

\ bigWigToBedGraph -chrom=chr17 -start=45941345 -end=45942345 http://hgdownload.soe.ucsc.edu/gbdb/hg38/recombRate/recombAvg.bw stdout\
\

\ \

\ Please refer to our\ Data Access FAQ\ for more information.\

\ \

Credits

\

\ This track was produced at UCSC using data that are freely available for\ the deCODE\ and 1000 Genomes genetic maps. Thanks to Po-Ru Loh at the\ Broad Institute for providing the code to lift the hg19 1000 Genomes map data to hg38.\

\ \

References

\

\ 1000 Genomes Project Consortium., Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA,\ Hurles ME, McVean GA.\ \ A map of human genome variation from population-scale sequencing.\ Nature. 2010 Oct 28;467(7319):1061-73.\ PMID: 20981092; PMC: PMC3042601\

\ \

\ Halldorsson BV, Palsson G, Stefansson OA, Jonsson H, Hardarson MT, Eggertsson HP, Gunnarsson B,\ Oddsson A, Halldorsson GH, Zink F et al.\ \ Characterizing mutagenic effects of recombination through a sequence-level genetic map.\ Science. 2019 Jan 25;363(6425).\ PMID: 30679340\

\ map 0 bigDataUrl /gbdb/hg38/recombRate/recombPat.bw\ html recombRate2.html\ longLabel Recombination rate: deCODE Genetics, paternal\ maxHeightPixels 128:60:8\ parent recombRate2\ priority 2\ shortLabel Recomb. deCODE Pat\ track recombPat\ type bigWig\ viewLimits 0.0:100\ viewLimitsMax 0:150000\ visibility full\ ncbiRefSeqCurated RefSeq Curated genePred NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*) 1 2 12 12 120 133 133 187 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 12,12,120\ idXref ncbiRefSeqLink mrnaAcc name\ longLabel NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)\ parent refSeqComposite on\ priority 2\ shortLabel RefSeq Curated\ track ncbiRefSeqCurated\ ReMapTFs ReMap ChIP-seq bigBed 9 + ReMap Atlas of Regulatory Regions 4 2 0 0 0 127 127 127 0 0 0

Description

\

\ This track represents the ReMap Atlas of regulatory regions, which consists of a\ large-scale integrative analysis of all Public ChIP-seq data for transcriptional\ regulators from GEO, ArrayExpress, and ENCODE. \

\ \

\ Below is a schematic diagram of the types of regulatory regions: \

    \
  • ReMap 2022 Atlas (all peaks for each analyzed data set)
    • \
  • ReMap 2022 Non-redundant peaks (merged similar target)
    • \
  • ReMap 2022 Cis Regulatory Modules
    • \
\

\ \ \ \

Display Conventions and Configuration

\
    \
  • \ Each transcription factor follows a specific RGB color.\
    • \
  • \ ChIP-seq peak summits are represented by vertical bars.\
    • \
  • \ Hsap: A data set is defined as a ChIP/Exo-seq experiment in a given\ GEO/ArrayExpress/ENCODE series (e.g. GSE41561), for a given TF (e.g. ESR1), in\ a particular biological condition (e.g. MCF-7).\
    Data sets are labeled with the concatenation of these three pieces of\ information (e.g. GSE41561.ESR1.MCF-7).\
    • \
  • \ Atha: The data set is defined as a ChIP-seq experiment in a given series\ (e.g. GSE94486), for a given target (e.g. ARR1), in a particular biological\ condition (i.e. ecotype, tissue type, experimental conditions; e.g.\ Col-0_seedling_3d-6BA-4h).\
    Data sets are labeled with the concatenation of these three pieces of\ information (e.g. GSE94486.ARR1.Col-0_seedling_3d-6BA-4h).\
    • \
\ \

Methods

\

\ This 4th release of ReMap (2022) presents the analysis of a total of 8,103 \ quality controlled ChIP-seq (n=7,895) and ChIP-exo (n=208) data sets from public\ sources (GEO, ArrayExpress, ENCODE). The ChIP-seq/exo data sets have been mapped\ to the GRCh38/hg38 human assembly. The data set is defined as a ChIP-seq \ experiment in a given series (e.g. GSE46237), for a given TF (e.g. NR2C2), in a\ particular biological condition (i.e. cell line, tissue type, disease state, or\ experimental conditions; e.g. HELA). Data sets were labeled by concatenating\ these three pieces of information, such as GSE46237.NR2C2.HELA. \ \

\

Those merged analyses cover a total of 1,211 DNA-binding proteins\ (transcriptional regulators) such as a variety of transcription factors (TFs),\ transcription co-activators (TCFs), and chromatin-remodeling factors (CRFs) for\ 182 million peaks. \

\ \ \ \

GEO & ArrayExpress

\

\ Public ChIP-seq data sets were extracted from Gene Expression Omnibus (GEO) and\ ArrayExpress (AE) databases. For GEO, the query\ \ '('chip seq' OR 'chipseq' OR\ 'chip sequencing') AND 'Genome binding/occupancy profiling by high throughput\ sequencing' AND 'homo sapiens'[organism] AND NOT 'ENCODE'[project]'\ \ was used to return a list of all potential data sets to analyze, which were then manually \ assessed for further analyses. Data sets involving polymerases (i.e. Pol2 and\ Pol3), and some mutated or fused TFs (e.g. KAP1 N/C terminal mutation, GSE27929)\ were excluded.\

\ \

ENCODE

\

\ Available ENCODE ChIP-seq data sets for transcriptional regulators from the\ ENCODE portal were processed with the\ standardized ReMap pipeline. The list of ENCODE data was retrieved as FASTQ files from the\ ENCODE portal\ using the following filters:\

    \
  • Assay: "ChIP-seq"
    • \
  • Organism: "Homo sapiens"
    • \
  • Target of assay: "transcription factor"
    • \
  • Available data: "fastq" on 2016 June 21st
    • \
\ Metadata information in JSON format and FASTQ files\ were retrieved using the Python requests module.\

\ \

ChIP-seq processing

\

\ Both Public and ENCODE data were processed similarly. Bowtie 2 (PMC3322381) (version 2.2.9) with options -end-to-end -sensitive was used to align all\ reads on the genome. Biological and technical\ replicates for each unique combination of GSE/TF/Cell type or Biological condition\ were used for peak calling. TFBS were identified using MACS2 peak-calling tool\ (PMC3120977) (version 2.1.1.2) in order to follow ENCODE ChIP-seq guidelines,\ with stringent thresholds (MACS2 default thresholds, p-value: 1e-5). An input data\ set was used when available.\

\ \ \

Quality assessment

\

\ To assess the quality of public data sets, a score was computed based on the\ cross-correlation and the FRiP (fraction of reads in peaks) metrics developed by\ the ENCODE Consortium (https://genome.ucsc.edu/ENCODE/qualityMetrics.html). Two\ thresholds were defined for each of the two cross-correlation ratios (NSC,\ normalized strand coefficient: 1.05 and 1.10; RSC, relative strand coefficient:\ 0.8 and 1.0). Detailed descriptions of the ENCODE quality coefficients can be\ found at https://genome.ucsc.edu/ENCODE/qualityMetrics.html. The\ phantompeak tools suite was used\ (https://code.google.com/p/phantompeakqualtools/) to compute\ RSC and NSC.\

\

\ Please refer to the ReMap 2022, 2020, and 2018 publications for more details\ (citation below).\

\ \ \ \

Data Access

\

\ ReMap Atlas of regulatory regions data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\ \

\ Individual BED files for specific TFs, cells/biotypes, or data sets can be\ found and downloaded on the ReMap website.\

\ \

References

\ \

\ Chèneby J, Gheorghe M, Artufel M, Mathelier A, Ballester B.\ \ ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-\ seq experiments.\ Nucleic Acids Res. 2018 Jan 4;46(D1):D267-D275.\ PMID: 29126285; PMC: PMC5753247\

\

\ Chèneby J, Ménétrier Z, Mestdagh M, Rosnet T, Douida A, Rhalloussi W, Bergon A, Lopez\ F, Ballester B.\ \ ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis\ DNA-binding sequencing experiments.\ Nucleic Acids Res. 2020 Jan 8;48(D1):D180-D188.\ PMID: 31665499; PMC: PMC7145625\

\

\ Griffon A, Barbier Q, Dalino J, van Helden J, Spicuglia S, Ballester B.\ \ Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory\ landscape.\ Nucleic Acids Res. 2015 Feb 27;43(4):e27.\ PMID: 25477382; PMC: PMC4344487\

\

\ Hammal F, de Langen P, Bergon A, Lopez F, Ballester B.\ \ ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an\ integrative analysis of DNA-binding sequencing experiments.\ Nucleic Acids Res. 2022 Jan 7;50(D1):D316-D325.\ PMID: 34751401; PMC: PMC8728178\

\ \ regulation 1 bigDataUrl /gbdb/hg38/reMap/reMap2022.bb\ denseCoverage 100\ filterLabel.Biotypes Biotypes (cell lines, tissues...)\ filterLabel.TF Transcriptional regulators\ filterText.Biotypes *\ filterText.TF *\ filterType.Biotypes multipleListOnlyOr\ filterType.TF multipleListOnlyOr\ filterValues.Biotypes 12Z,143B,226LDM,22Rv1,402-91,501-mel,697,786-M1A,786-O,81-3,A-137,A139,A-1847,A1A3,A2780,A2780cis,A-375,A-498,A-549,A-673,A-673-clone-Asp114,AB32,AB-LCL,AC16,adipocyte,adrenal-gland,adult-duodenal-cell,AF22,aggregated-lymphoid-nodules,AGS,ALL,ALL-SIL,AMIPS6,AMIPS8,AML,AMLPZ12,anterior-temporal-cortex,aorta,aortic-endothelial-cell,aortic-smooth-muscle-cell,arterial-endothelial-cells,artery,ASC,ascending-aorta,Aska-SS,AsPC-1,astrocyte,BA10,BA40,BC-3,BCBL-1,B-cell,BCP-ALL,BCR-ABL1,BDMC,BE2C,BEAS-2B,BG01V,BG03,BH-LCLs,BICR,BIN-67,BJ,BJ1-hTERT,BJAB,BL41,BLM,blood,BLUE1,bonchial,BPE,BPLER,brain-prefrontal-cortex,breast,breast-cancer,breast-organoid,BT-16,BT-20,BT-474,BT-549,BxPC-3,CA46,Caco-2,CAL-1,Calu-1,Calu-3,cardiac,cardiac-muscle,cardiomyocyte,cartilage,CaSki,CC-LP-1,CCLP1,ccRCC,CCRF-CEM,CD14,CD34,CD34-pos,CD4,CD4-pos,CD8,CFPAC-1,CHL-1,chondrosarcoma,choroid-plexus,CHP-134,CHRF28811,CLB-Ga,CLL,COG-N-415,COLO-205,COLO-320,COLO-741,COLO-800,COLO-829,colon,colorectal-cancer,coronary-artery,cortical-interneuron,CRL-7250,CTV-1,CUTLL1,D283-Med,D341-Med,D54,DAOY,DC,delta-47,dendrite,dermal,dermal-fibroblast,Detroit-562,DKO,DLBCL,DLD-1,DND41,DOHH2,dopaminergic-neuron,DU145,DU528,DUCAP,EDOMIPS2,EM-3,embryonic-kidney,EndoC-betaH2,endoderm,endometrial-epithelial-cells,endometrial-stromal-cell,endometrioid-adenocarcinoma,endometrium,endothelial,EP156T,epididymis,epithelial,erythroblast,erythroid,erythroid-progenitor,ESF,ESO-26,esophagus,esophagus-muscularis-mucosa,esophagus-squamous-epithelium,FaDu,fetal,fibroblast,FLP143HA,FLP76,foregut,foreskin,FT282,G296S,G-401,G523NS,gastric-epithelial-cell,gastrocnemius-medialis,gastroesophageal-sphincter,GBM1A,GEN2-2,GIC,GIST,GIST48,GIST882,GIST-T1,glioblastoma,glioma,GM00011,GM01310,GM04025,GM04604,GM04648,GM06077,GM06170,GM06990,GM08714,GM09236,GM09237,GM10248,GM10266,GM10847,GM12801,GM12864,GM12865,GM12866,GM12867,GM12868,GM12869,GM12870,GM12871,GM12872,GM12873,GM12874,GM12875,GM12878,GM12891,GM12892,GM13976,GM13977,GM15510,GM15850,GM17942,GM18505,GM18526,GM18951,GM19099,GM19193,GM20000,GM23248,GM23338,GP5D,GRANT-A519,GSC,GSC23,GSC8-11,H-1,H69,H9,HaCaT,HAEC,HAP1,HASMC,HBE,HBTEC,HCAEC,HCASMC,HCC1143,HCC1187,HCC1395,HCC1428,HCC1599,HCC1806,HCC1937,HCC1954,HCC2157,HCC2814,HCC70,HCC95,HCCLM3,HCT-116,HCT-15,HDF,heart,HEC-1-A,HEC-1-B,HEE,HEK,HEK293,HEK293-FT,HEK293T,HEL,HeLa,HeLa-B2,HeLa-Kyoto,HeLa-S3,HeLa-Tet-On,HEP,HEP10-01008-LCLs,HEP14-00120-LCLs,HEP14-0079-LCLs,HEP14-0080-LCLs,Hep-3B2-1-7,HepaRG,hepatocellular-carcinoma-cell,hepatocyte,Hep-G2,hESC,hESC-1,HEY-A8,HFF,HFOB,HGrC1,HIES,hiF-T,hippocampus,hiPSC,HKC,HL-60,hMADS,HMEC-1,HMELBRAF,HMLE,HMLER,HMLE-Twist-ER,HMS001,hMSC,hMSC-TERT,hMSC-TERT4,HNPC,HNSC,HPBALL,Hs-352-Sk,HS578T,HSPC,HSPC-CD34,HSPC-CD34pos,HS-SY-2,HT-1080,HT29,hTERT-HME1,HUCCT1,HUDEP-2,HUES-64,HUES-8,HUG1N,Huh-7,HUVEC-C,ID00014,ID00015,ID00016,IM95,IMEC,IMR-5,IMR-90,IMS-M2,induced-endothelial-cell,intestinal-cell,Ishikawa,islet,JD-LCLs,JHU-029,J-Lat,JL-LCLs,JMSU-1,Jurkat,K-562,Karpas-299,Karpas-422,KARPAS422,Karpas-45,Kasumi-1,KATO-III,KB,Kelly,keratinocyte,KerCT,KG-1,KGN,kidney,kidney-cortex,KK-1,KMS-11,KNS-62,KOPN-8,KOPT-K1,KYSE-150,KYSE-70,L1236,L826,LA-N-5,LA-N-6,LAPC-4,LBCL,LCL,LCLGM10861,leiomyoma,leukemia,LHSAR,liver,LK2,LNAR,LNCaP,LNCaP-95,LNCaP-abl,LNCaP-C4-2,LNCaP-C4-2B,LNCaP-clone-FGC,LNCaP-FGC,Loucy,LoVo,LOX-IMVI,LP1,LPS141,LREX,LS174T,LS180,LTAD,Lu-130,lung,LX2,lymphoblast,lymphocyte,macrophage,MALME-3,mammary-epithelial-cell,MCF-10A,MCF10A-Er-Src,MCF-10AT1,MCF-10CA1a,MCF-7,MCF-7L,MCF-7-Luc,MCF-7-Luc-Y537S,MCF-7-TAMR-1,MCF7-Tet-On,MCF-7-WS8,MDA-BoM-1833,MDA-MB-134-VI,MDA-MB-157,MDA-MB-231,MDA-MB-361,MDA-MB-435,MDA-MB-436,MDA-MB-453,MDA-MB-468,MDA-Pca-2b,MDM,ME-1,medulloblastoma,Mel270,melanocyte,mesenchymal,metastatic-neuroblastoma,MG-63-3,MIA-PaCa-2,MKN28,MKN74,ML-2,MM1-S,MNNG-HOS,MO91,MOLM-13,MOLM-14,MOLT-3,MOLT-4,monocyte,MPNST,MRC-5,MSTO,Mutu-1,MUTUL,MV4-11,MV4-11-B,MYCN-3,myoblast,myofibroblast,myometrium,myotube,NALM-6,Namalwa,NB-1643,NB4,NB69,NCCIT,NCI-H1048,NCI-H128,NCI-H1299,NCI-H1703,NCI-H1819,NCI-H1963,NCI-H1975,NCI-H2087,NCI-H2107,NCI-H2171,NCI-H23,NCI-H295R,NCI-H3122,NCI-H3396,NCI-H358,NCI-H441,NCI-H460,NCI-H520,NCI-H524,NCI-H526,NCI-H82,NCI-H838,NCI-H889,NCI-H929,nerve,neural,neural-progenitor,neuroblastoma,neuroepithelilal-cells,neuron,neuron-progenitor,neutrophil,NGP,NHEK,NMC24335,NOMO1,NPC,NSC,NT2-D1,NTERA2,NUT,NY15,OACP4-C,OCI-AML-3,OCI-AML3,OCI-Ly1,OCI-Ly10,OCI-Ly19,OCI-Ly3,OCI-Ly7,ocular-melanoma-cell,OE33,omental-fat-pad,OSK,OSKM,osteoblast,OSvK,OSvKM,ovary,OVCA429,OVCAR-3,OVCAR-5,OVCAR-8,OVSAHO,P12,P493-6,PANC-1,pancreas,pancreatic-progenitor,PATU8988,PAVE,PBMC,PC-3,PC-9,PDAC,PEO1,PER-117,peripheral-blood-mononuclear-cell,peripheral-blood-neutrophil,Peyers-patch,PF-382,Pfeiffer,PFSK1,PK-LCLs,placenta,plasmablast,pleural-effusion,pre-B-cell,PrEC,PRIMA2,PRIMA5,primary-B-cell,primary-breast-cancer,primary-bronchial-epithelial,primary-chondrocyte,primary-dermal-fibroblasts,primary-endometrial-stromal-cell,primary-endometrium-cancer,primary-epidermal-keratinocyte,primary-glioblastoma,primary-keratinocyte,primary-lung-fibroblast,primary-monocyte,primary-neutrophil,primary-prostate-cancer,primary-prostate-epithelial-cell,primordial-germ-cell-like-cell,ProEs,proliferating-human-fibroblast,prostate,prostate-cancer,pulmonary-artery,Raji,Ramos,RCC10,RCC4,RCH-ACV,RD,REC-1,Reh,RENVM,retina,Rh18,RH3,RH30,RH4,Rh41,RH5,rhabdomyosarcoma,RKO,RL,RMG-I,RPE,RPMI8402,RS4-11,RWPE-1,RWPE-2,SaOS-2,SCC,SCC-25,SCC-9,SCCOHT-1,SCLC,SCMC,SEM,SET-2,SF8628,SGBS,SH-EP,SHEP-21N,SHI-1,SH-SY5Y,sigmoid-colon,SiHa,SJSA-1,SK-BR-3,SKH1,skin,SKM-1,SK-MEL-147,SK-MEL-239,SK-MEL-28,SK-MEL-5,SK-N-AS,SK-N-BE2,SK-N-BE2-C,SK-N-MC,SKNO-1,SK-N-SH,SK-UT-1,SLK,SMMC-7721,smooth-muscle-cell,SMS-CTR,SMS-KCN,SMS-KCNR,SNU-216,SNU-398,SP-49,spleen,ST-1,stomach,subcutaneous-adipose-tissue,SU-DHL-10,SU-DHL-2,SU-DHL-4,SU-DHL-5,SU-DHL-6,SUIT-2,SUM1315,SUM149,SUM149PT,SUM159,SUM159PT,SUM185,SUM229PE,SUM44PE,SUP-B15,SVOG-3e,SW1353,SW1783,SW1990,SW480,SW620,SYO-1,T-47D,T-47D-A,T47D-A1-2,T-47D-B,T-47D-MTVL,T778,T98G,TALL-1,TC-32,TC-71,T-cell,TE-5,testis,TF1,Th1,Th17,T-HESCs,thoracic-aorta,THP-1,THP-6,thymocyte,thymus,thyroid-cancer,thyroid-gland,tibial-artery,tibial-nerve,TMD8,tonsil,TOV-21G,T-REx-293,TSU-1621MT,TT,TTC-1240,TTC-549,U266,U266B1,U2932,U2OS,U-87MG,U-937,UACC-257,UACC-62,UAE,UCLA1-hESCs,UCSD-AML1,UM-RC-6,UO-31,UPCI-SCC-090,UTEIPS11,UTEIPS4,UTEIPS6,UTEIPS7,uterus,vagina,VCaP,VCaP-LTAD,VU-SCC-147,WA01,WA09,WERI-Rb-1,WHIM12,WI-38,WI-38VA13,WIBR3,WN8532,WPMY-1,WSU-DLCL2,YCC-3,ZR-75-1,ZR751\ filterValues.TF AATF,ADNP,AEBP2,AFF1,AFF4,AGO1,AHR,AHRR,APC,AR,ARHGAP35,ARID1A,ARID1B,ARID2,ARID3A,ARID3B,ARID4A,ARID4B,ARID5B,ARNT,ARNTL,ARRB1,ASCL1,ASH1L,ASH2L,ASXL1,ASXL3,ATF1,ATF2,ATF3,ATF4,ATF7,ATM,ATOH8,ATRX,ATXN7L3,BACH1,BACH2,BAF155,BAHD1,BAP1,BATF,BATF3,BCL11A,BCL11B,BCL3,BCL6,BCL6B,BCLAF1,BCOR,BDP1,BHLHE22,BHLHE40,BICRA,BMI1,BMPR1A,BNC2,BPTF,BRCA1,BRD1,BRD2,BRD3,BRD4,BRD7,BRD9,BRF1,BRF2,C17orf49,CARM1,CASZ1,CBFA2T2,CBFA2T3,CBFB,CBX1,CBX2,CBX3,CBX4,CBX5,CBX7,CBX8,CC2D1A,CCAR2,CCNT2,CD74,CDC5L,CDK2,CDK6,CDK7,CDK8,CDK9,CDK9-HEXIM1,CDKN1B,CDX2,CEBPA,CEBPB,CEBPD,CEBPG,CEBPZ,CERS6,CHAF1B,CHAMP1,CHD1,CHD2,CHD4,CHD7,CHD8,CIITA,CLOCK,COBLL1,CREB1,CREB3,CREB3L1,CREB5,CREBBP,CREM,CRX,CRY1,CRY2,CSDC2,CSNK2A1,CTBP1,CTBP2,CTCF,CTCFL,CTNNB1,CUX1,CXXC4,CXXC5,DACH1,DAXX,DDX20,DDX21,DDX5,DEAF1,DEK,DIDO1,DLX4,DLX6,DMAP1,DNMT1,DNMT3B,DPF1,DPF2,DR1,DRAP1,DUX4,E2F1,E2F3,E2F4,E2F5,E2F6,E2F7,E2F8,E4F1,EBF1,EBF3,EED,EGR1,EHF,EHMT2,ELF1,ELF2,ELF3,ELF4,ELF5,ELK1,ELK4,ELL,ELL2,EOMES,EP300,EP400,EPAS1,ERF,ERG,ESR1,ESR2,ESRRA,ESRRB,ESRRG,ETS1,ETS2,ETV1,ETV2,ETV4,ETV6,EVI1,EWSR1,EZH1,EZH2,FANCD2,FANCL,FEZF1,FIP1L1,FLI1,FOS,FOSB,FOSL1,FOSL2,FOXA1,FOXA2,FOXF1,FOXF2,FOXJ2,FOXJ3,FOXK1,FOXK2,FOXL2,FOXM1,FOXO1,FOXO1-PAX3,FOXO3,FOXP1,FOXP2,FOXP4,FOXS1,FUS,GABPA,GABPB1,GATA1,GATA2,GATA3,GATA4,GATA6,GATAD1,GATAD2A,GATAD2B,GFI1,GFI1B,GLI1,GLI2,GLI4,GLIS1,GLIS2,GLIS3,GLYR1,GMEB1,GMEB2,GPS2,GR,GRHL1,GRHL2,GSPT2,GTF2A2,GTF2B,GTF2F1,GTF3A,GTF3C2,GTF3C5,HAND2,HBP1,HCFC1,HCFC1R1,HDAC1,HDAC2,HDAC3,HDAC6,HDAC8,HDGF,HES1,HEXIM1,HEXIM1-CDK9,HEY1,HEY2,HHEX,HIC1,HIF1A,HIF3A,HINFP,HIVEP1,HKR1,HLF,HMBOX1,HMGA1,HMGB1,HMGB2,HMGN3,HMGXB4,HNF1A,HNF1B,HNF4A,HNF4G,HNRNPC,HNRNPH1,HNRNPK,HNRNPL,HNRNPLL,HNRNPUL1,HOMEZ,HOXA3,HOXA7,HOXA9,HOXB13,HOXB5,HOXB7,HOXB8,HOXC5,HOXC6,HSF1,HSF2,ICE1,ICE2,ID3,IFNA1,IKZF1,IKZF2,IKZF3,ILF3,ILK,INO80,INSM2,INTS11,INTS13,IRF1,IRF2,IRF2BP2,IRF3,IRF4,IRF5,IRF8,IRF9,ISL1,ISL2,JARID2,JDP2,JMJD1C,JMJD6,JUN,JUNB,JUND,KAT2A,KAT2B,KAT7,KAT8,KDM1A,KDM3A,KDM4A,KDM4B,KDM4C,KDM5A,KDM5B,KDM6B,KLF1,KLF10,KLF12,KLF13,KLF14,KLF15,KLF16,KLF17,KLF3,KLF4,KLF5,KLF6,KLF7,KLF8,KLF9,KMT2A,KMT2B,KMT2C,KMT2D,L3MBTL2,L3MBTL4,LCORL,LDB1,LEF1,LHX2,LIN54,LIN9,LMO1,LMO2,LYL1,MAF,MAF1,MAFB,MAFF,MAFG,MAFK,MAML1,MAML3,MAX,MAZ,MBD1,MBD2,MBD3,MBD4,MCM2,MCM3,MCM5,MCM7,MCRS1,MECOM,MECP2,MED,MED1,MED12,MED25,MED26,MEF2A,MEF2B,MEF2C,MEF2D,MEIS1,MEIS2,MEN1,MGA,MIER1,MITF,MLL4,MLLT1,MLLT3,MLX,MLXIP,MNT,MNX1,MORC2,MPHOSPH8,MRTFA,MRTFB,MSX2,MTA1,MTA2,MTA3,MTF2,MXD4,MXI1,MYB,MYBL2,MYC,MYC-DAXX,MYCN,MYF5,MYNN,MYOCD,MYOD1,MYOG,MZF1,NAB2,NANOG,NBN,NCAPH2,NCBP1,NCOA1,NCOA2,NCOA3,NCOA4,NCOA6,NCOR1,NCOR2,NELFA,NELFCD,NELFE,NEUROD1,NEUROG2,NFAT5,NFATC1,NFATC2,NFATC3,NFE2,NFE2L1,NFE2L2,NFIA,NFIB,NFIC,NFIL3,NFIX,NFKB1,NFKB2,NFKBIA,NFKBIZ,NFRKB,NFXL1,NFYA,NFYB,NFYC,NIPBL,NKX2-1,NKX2-5,NKX3-1,NME2,NONO,NOTCH1,NOTCH3,NR0B1,NR1H2,NR1H3,NR2C1,NR2C2,NR2F1,NR2F2,NR2F6,NR3C1,NR4A1,NR5A1,NR5A2,NRF1,NRIP1,NRL,NSD2,NUFIP1,NUP98-HOXA9,NUTM1,OGG1,OGT,OLIG2,ONECUT1,ONECUT2,OSR2,OTX2,OVOL1,OVOL3,PAF1,PALB2,PARP1,PATZ1,PAX3-FOXO1,PAX5,PAX6,PAX7,PAX8,PAXIP1,PBX1,PBX1-2-3,PBX2,PBX3,PCBP1,PCBP2,PCGF1,PCGF2,PDX1,PGR,PHB2,PHC1,PHF19,PHF20,PHF21A,PHF5A,PHF8,PHIP,PHOX2B,PITX3,PKNOX1,PLAG1,PLRG1,PML,POU2AF1,POU2F1,POU2F2,POU2F3,POU3F1,POU3F2,POU4F2,POU5F1,PPARA,PPARG,PPARGC1A,PRDM1,PRDM10,PRDM12,PRDM14,PRDM15,PRDM2,PRDM4,PRDM6,PREB,PRKDC,PRMT5,PROX1,PRPF4,PSIP1,PTBP1,PTRF,PTTG1,PYGO2,RAD21,RAD51,RARA,RB1,RBAK,RBBP4,RBBP5,RBFOX2,RBM14,RBM15,RBM22,RBM25,RBM34,RBM39,RBP2,RBPJ,RCOR1,REL,RELA,RELB,REPIN1,REST,RFX1,RFX2,RFX3,RFX5,RFXAP,RING1,RLF,RNF2,RORB,RORC,RPA2,RREB1,RUNX1,RUNX1-3,RUNX1-RUNX1T1,RUNX1T1,RUNX2,RUVBL1,RUVBL2,RXR,RXRA,RYBP,SAFB,SAFB2,SALL1,SALL2,SALL3,SALL4,SAP30,SATB1,SCRT1,SETDB1,SETX,SFMBT1,SFPQ,SGF29,SHOX2,SIN3A,SIN3B,SIRT3,SIRT6,SIX1,SIX2,SIX4,SIX5,SKI,SKIL,SMAD1,SMAD1-5,SMAD1-5-8,SMAD2,SMAD2-3,SMAD3,SMAD3-EPAS1,SMAD3-HIF1A,SMAD4,SMAD5,SMARCA2,SMARCA4,SMARCA5,SMARCB1,SMARCC1,SMARCC2,SMARCD3,SMARCE1,SMC1,SMC1A,SMC1A-B,SMC3,SMC4,SNAI1,SNAI2,SNAPC1,SNAPC4,SND1,SNIP1,SNRNP70,SOX10,SOX11,SOX13,SOX2,SOX21,SOX3,SOX4,SOX6,SOX8,SOX9,SP1,SP140L,SP2,SP3,SP4,SP5,SP7,SPDEF,SPI1,SPIB,SPIN1,SRC,SREBF1,SREBF2,SREBP2,SRF,SRSF1,SRSF3,SRSF4,SRSF7,SRSF9,SS18,SS18-SSX,SSRP1,STAG1,STAG2,STAT1,STAT2,STAT3,STAT5A,STAT5B,SUPT16H,SUPT5H,SUPT6H,SUZ12,SVIL,T,TAF1,TAF15,TAF2,TAF3,TAF7,TAF9B,TAL1,TARDBP,TASOR,TBL1X,TBL1XR1,TBP,TBX18,TBX2,TBX21,TBX3,TBX5,TCF12,TCF21,TCF25,TCF3,TCF3-PBX1,TCF4,TCF7,TCF7L2,TCFL5,TCOF1,TEAD1,TEAD2,TEAD4,TERF1,TERF2,TERT,TET2,TFAP2A,TFAP2C,TFAP4,TFCP2,TFDP1,TFDP2,TFE3,TFEB,TFIIIC,TGIF2,THAP1,THAP11,THRA,THRAP3,THRB,TLE3,TOP1,TOP2A,TOX2,TP53,TP63,TP73,TRIM22,TRIM24,TRIM25,TRIM28,TRIP13,TRPS1,TRRAP,TSC22D4,TSHZ1,TSHZ2,TWIST1,U2AF1,U2AF2,UBN1,UBTF,USF1,USF2,USP7,UTX,VDR,VEZF1,WDHD1,WDR5,WRNIP1,WT1,XBP1,XRCC3,XRCC5,XRN2,YAP1,YBX1,YBX3,YY1,YY1AP1,YY2,ZBED1,ZBED2,ZBED4,ZBTB1,ZBTB10,ZBTB11,ZBTB12,ZBTB14,ZBTB16,ZBTB18,ZBTB2,ZBTB20,ZBTB21,ZBTB24,ZBTB26,ZBTB33,ZBTB40,ZBTB42,ZBTB44,ZBTB48,ZBTB49,ZBTB5,ZBTB6,ZBTB7A,ZBTB7B,ZBTB8A,ZC3H11A,ZC3H8,ZEB1,ZEB2,ZFP14,ZFP28,ZFP3,ZFP36,ZFP37,ZFP41,ZFP42,ZFP57,ZFP64,ZFP69,ZFP69B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html ../reMap\ itemRgb on\ labelFields name, TF, Biotypes\ longLabel ReMap Atlas of Regulatory Regions\ maxWindowCoverage 50000\ parent ReMap on\ priority 2\ shortLabel ReMap ChIP-seq\ showCfg on\ track ReMapTFs\ type bigBed 9 +\ urls TF="http://remap.univ-amu.fr/target_page/$$:9606" Biotypes="http://remap.univ-amu.fr/biotype_page/$$:9606"\ visibility squish\ rmskJoinedCurrent RepeatMasker Viz. bed 3 + RepeatMasker v4.0.7 Dfam_2.0 : Current Dataset 0 2 0 0 0 127 127 127 1 0 0 rep 0 longLabel RepeatMasker v4.0.7 Dfam_2.0 : Current Dataset\ parent joinedRmsk on\ priority 2\ shortLabel RepeatMasker Viz.\ track rmskJoinedCurrent\ miRnaAtlasSample2BarChart Sample 2 bigBarChart miRNA Tissue Atlas microRna Expression 2 2 0 0 0 127 127 127 0 0 0

Description

\

\ The Human miRNA Tissue Atlas is a\ catalog of tissue-specific microRNA (miRNA) expression across 62 tissues. This track contains\ quantile normalized miRNA expression data sampled from two individuals and mapped to\ miRBase v21 coordinates. The track contains two subtracks, one\ for each individual sampled.

\ \

\ The Tissue Specificity Index (TSI) is analogous to the "tau" value for mRNA expression,\ and is calculated as described in the\ \ associated publication. Values closer to 0 indicate miRNAs expressed in many or all tissues,\ while values closer to 1 indicate miRNAs expressed only in a specific tissue or tissues. To\ browse miRNAs by TSI value, please see the\ miRNA Tissue Atlas.

\ \

Display Conventions and Configuration

\

\ This track is formatted as a barChart track,\ similar to the GTEx or the\ TCGA Cancer Expression tracks, where the\ heights of each bar indicate the expression value for the miRNA in a specific tissue. The tissues\ sampled are described in the table below:\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
Bar ColorSample 1Sample 2
AdipocyteAdipocyte
ArteryArtery
ColonColon
Dura materDura mater
KidneyKidney
LiverLiver
LungLung
MuscleMuscle
MyocardiumMyocardium
SkinSkin
SpleenSpleen
StomachStomach
TestisTestis
ThyroidThyroid
Small intestine
Bone
Gallbladder
Fascia
Bladder
Epididymis
Tunica albuginea
Nervus intercostalis
Arachnoid mater
Brain
Small intestine duodenum
Small intestine jejunum
Pancreas
Kidney glandula suprarenalis
Kidney cortex renalis
Esophagus
Prostate
Bone marrow
Vein
Lymph node
Nerve not specified
Pleura
Pituitary gland
Spinal cord
Thalamus
Brain white matter
Nucleus caudatus
Kidney medulla renalis
Brain gray_matter
Cerebral cortex temporal
Cerebral cortex frontal
Cerebral cortex occipital
Cerebellum
\

\ The 14 shared tissues sampled across both individuals are presented in the same order for easier comparison.\

\ \

Data Access

\

\ The underlying expression matrix and TSI values can be obtained from the\ miRNA tissue atlas website, in the\ data_matrix_quantile.txt and tsi_quantile.csv files.\

\ \

References

\

\ Ludwig N, Leidinger P, Becker K, Backes C, Fehlmann T, Pallasch C, Rheinheimer S, Meder B,\ Stähler C, Meese E et al.\ \ Distribution of miRNA expression across human tissues.\ Nucleic Acids Res. 2016 May 5;44(8):3865-77.\ PMID: 26921406; PMC: PMC4856985\

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missenseByTranscript Transcript Missense v2 bigBed 12 + gnomAD Predicted Missense Constraint Metrics By Transcript (Z-scores) v2.1.1 3 2 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/transcript/$$?dataset=gnomad_r2_1 varRep 1 bigDataUrl /gbdb/hg38/gnomAD/pLI/missenseByTranscript.bb\ filter._zscore -20:11\ filterByRange._zscore on\ filterLabel._zscore Show only items between this Z-score range\ labelFields name,geneName\ longLabel gnomAD Predicted Missense Constraint Metrics By Transcript (Z-scores) v2.1.1\ mouseOverField _mouseOver\ parent constraintV2 off\ priority 2\ searchIndex name,geneName\ shortLabel Transcript Missense v2\ subGroups view=v2\ track missenseByTranscript\ type bigBed 12 +\ url https://gnomad.broadinstitute.org/transcript/$$?dataset=gnomad_r2_1\ urlLabel View this Transcript on the gnomAD browser\ missenseByTranscriptV4 Transcript Missense v4 bigBed 12 + gnomAD Predicted Missense Constraint Metrics By Transcript (Z-scores) v4 3 2 0 0 0 127 127 127 0 0 0 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name,acc,uniprotName,geneName,hgncSym,refSeq,refSeqProt,ensProt\ longLabel UCSC alignment of TrEMBL proteins to genome\ mouseOverField protFullNames\ parent uniprot off\ priority 2\ searchIndex name,acc\ shortLabel TrEMBL Aln.\ showDiffBasesAllScales on\ skipFields isMain\ track unipAliTrembl\ type bigPsl\ urls acc="https://www.uniprot.org/uniprot/$$" hgncId="https://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" refseq="https://www.ncbi.nlm.nih.gov/nuccore/$$" refSeqProt="https://www.ncbi.nlm.nih.gov/protein/$$" ncbiGene="https://www.ncbi.nlm.nih.gov/gene/$$" entrezGene="https://www.ncbi.nlm.nih.gov/gene/$$" ensGene="https://www.ensembl.org/Gene/Summary?g=$$"\ visibility hide\ TSS_activity_read_counts TSS activity - read counts bigWig FANTOM5: TSS activity per sample read counts 0 2 0 0 0 127 127 127 0 0 0

Description

\

\ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\

\ \

Display Conventions and Configuration

\ \

Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

\ \

Methods

\

Protocol

\

Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE (Kanamori-Katyama\ et al. 2011).\

    \
  • hCAGE
    • \
  • LQhCAGE
    • \
\

\

Samples

\

Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\

    \
  • Primary cell
    • \
  • Tissue
    • \
  • Cell Line
    • \
  • Time course
    • \
  • Fractionation
    • \
\

\

TSS peaks

\

TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as a\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They are\ named "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or "p@CHROM:START..END,STRAND"\ otherwise. The summary tracks consist of the TSS (CAGE) peaks and summary profiles of TSS\ activities (total and maximum values). The summary track consists of the following tracks.\

    \
  • TSS (CAGE) peaks\
      \
    • the robust peaks
      • \
    \
    • \
  • TSS summary profiles\
      \
    • Total counts and TPM (tags per million) in all the samples
      • \
    • Maximum counts and TPM among the samples
      • \
    \
    • \
\ \

TSS activity

\

\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as TPM (tags per million).\

\ \
\
Categories of individual samples
\
- Cell Line hCAGE
\
- Cell Line LQhCAGE
\
- fractionation hCAGE
\
- Primary cell hCAGE
\
- Primary cell LQhCAGE
\
- Time course hCAGE
\
- Tissue hCAGE
\
\ \

Data Access

\

\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

\ \

\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.

\ \

Credits

\ \

\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, the Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.

\ \

References

\

\ FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\ Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\ \ A promoter-level mammalian expression atlas.\ Nature. 2014 Mar 27;507(7493):462-70.\ PMID: 24670764; PMC: PMC4529748\

\ \

\ Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\ N, Daub CO et al.\ \ Unamplified cap analysis of gene expression on a single-molecule sequencer.\ Genome Res. 2011 Jul;21(7):1150-9.\ PMID: 21596820; PMC: PMC3129257\

\ \

\ Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\ Ishikawa-Kato S et al.\ \ Gateways to the FANTOM5 promoter level mammalian expression atlas.\ Genome Biol. 2015 Jan 5;16(1):22.\ PMID: 25723102; PMC: PMC4310165\

\ regulation 0 boxedCfg on\ compositeTrack on\ dataVersion FANTOM5 reprocessed7\ dimensions dimX=sequenceTech dimY=category dimA=strand\ html fantom5.html\ longLabel FANTOM5: TSS activity per sample read counts\ priority 2\ shortLabel TSS activity - read counts\ showSubtrackColorOnUi off\ sortOrder category=+ sequenceTech=+\ subGroup1 sequenceTech Sequence_Tech hCAGE=hCAGE LQhCAGE=LQhCAGE\ subGroup2 category Category cellLine=cellLine fractionation=fractionation primaryCell=primaryCell tissue=tissue AoSMC_response_to_FGF2=AoSMC_response_to_FGF2_timecourse AoSMC_response_to_IL1b=AoSMC_response_to_IL1b_timecourse ES_to_cardiomyocyte=ES_to_cardiomyocyte_timecourse Embryoid_body_to_melanocyte=Embryoid_body_to_melanocyte_timecourse Epithelial_to_mesenchymal=Epithelial_to_mesenchymal_timecourse Human_iPS_to_neuron_Downs_syndrome_1=Human_iPS_to_neuron_Downs_syndrome_1_timecourse Human_iPS_to_neuron_Downs_syndrome_2=Human_iPS_to_neuron_Downs_syndrome_2_timecourse Human_iPS_to_neuron_wt_1=Human_iPS_to_neuron_wt_1_timecourse Human_iPS_to_neuron_wt_2=Human_iPS_to_neuron_wt_2_timecourse Lymphatic_EC_response_to_VEGFC=Lymphatic_EC_response_to_VEGFC_timecourse MCF7_response_to_EGF=MCF7_response_to_EGF_timecourse MCF7_response_to_HRG=MCF7_response_to_HRG_timecourse MSC_to_adipocyte_human=MSC_to_adipocyte_human_timecourse Macrophage_influenza_infection=Macrophage_influenza_infection_timecourse Macrophage_response_to_LPS=Macrophage_response_to_LPS_timecourse Myoblast_to_myotube_wt_and_DMD=Myoblast_to_myotube_wt_and_DMD_timecourse Preadipocyte_to_adipocyte=Preadipocyte_to_adipocyte_timecourse Rinderpest_infection_series=Rinderpest_infection_series_timecourse Saos_calcification=Saos_calcification_timecourse timecourse=other_samples_in_timecourse\ subGroup3 strand Strand forward=forward reverse=reverse\ superTrack fantom5\ track TSS_activity_read_counts\ type bigWig\ visibility hide\ umap36 Umap S36 bigBed 6 Single-read mappability with 36-mers 0 2 80 70 240 167 162 247 0 0 0 map 1 bigDataUrl /gbdb/hg38/hoffmanMappability/k36.Unique.Mappability.bb\ color 80,70,240\ longLabel Single-read mappability with 36-mers\ parent umapBigBed off\ priority 2\ shortLabel Umap S36\ subGroups view=SR\ track umap36\ visibility hide\ cpgIslandExtUnmasked Unmasked CpG bed 4 + CpG Islands on All Sequence (Islands < 300 Bases are Light Green) 0 2 0 100 0 128 228 128 0 0 0

Description

\ \

CpG islands are associated with genes, particularly housekeeping\ genes, in vertebrates. CpG islands are typically common near\ transcription start sites and may be associated with promoter\ regions. Normally a C (cytosine) base followed immediately by a \ G (guanine) base (a CpG) is rare in\ vertebrate DNA because the Cs in such an arrangement tend to be\ methylated. This methylation helps distinguish the newly synthesized\ DNA strand from the parent strand, which aids in the final stages of\ DNA proofreading after duplication. However, over evolutionary time,\ methylated Cs tend to turn into Ts because of spontaneous\ deamination. The result is that CpGs are relatively rare unless\ there is selective pressure to keep them or a region is not methylated\ for some other reason, perhaps having to do with the regulation of gene\ expression. CpG islands are regions where CpGs are present at\ significantly higher levels than is typical for the genome as a whole.

\ \

\ The unmasked version of the track displays potential CpG islands\ that exist in repeat regions and would otherwise not be visible\ in the repeat masked version.\

\ \

\ By default, only the masked version of the track is displayed. To view the\ unmasked version, change the visibility settings in the track controls at\ the top of this page.\

\ \

Methods

\ \

CpG islands were predicted by searching the sequence one base at a\ time, scoring each dinucleotide (+17 for CG and -1 for others) and\ identifying maximally scoring segments. Each segment was then\ evaluated for the following criteria:\ \

    \ \
  • GC content of 50% or greater
    • \ \
  • length greater than 200 bp
    • \ \
  • ratio greater than 0.6 of observed number of CG dinucleotides to the expected number on the \ \ basis of the number of Gs and Cs in the segment
    • \
\

\

\ The entire genome sequence, masking areas included, was\ used for the construction of the track Unmasked CpG.\ The track CpG Islands is constructed on the sequence after\ all masked sequence is removed.\

\ \

The CpG count is the number of CG dinucleotides in the island. \ The Percentage CpG is the ratio of CpG nucleotide bases\ (twice the CpG count) to the length. The ratio of observed to expected \ CpG is calculated according to the formula (cited in \ Gardiner-Garden et al. (1987)):\ \ 

    Obs/Exp CpG = Number of CpG * N / (Number of C * Number of G)
\ \ where N = length of sequence.

\

\ The calculation of the track data is performed by the following command sequence:\ 

\
twoBitToFa assembly.2bit stdout | maskOutFa stdin hard stdout \\\
  | cpg_lh /dev/stdin 2> cpg_lh.err \\\
    |  awk '{$2 = $2 - 1; width = $3 - $2;  printf("%s\\t%d\\t%s\\t%s %s\\t%s\\t%s\\t%0.0f\\t%0.1f\\t%s\\t%s\\n", $1, $2, $3, $5, $6, width, $6, width*$7*0.01, 100.0*2*$6/width, $7, $9);}' \\\
     | sort -k1,1 -k2,2n > cpgIsland.bed\
\ The unmasked track data is constructed from\ twoBitToFa -noMask output for the twoBitToFa command.\

\ \

Data access

\

\ CpG islands and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator.\ All the tables can also be queried directly from our public MySQL\ servers, with more information available on our\ help page as well as on\ our blog.

\

\ The source for the cpg_lh program can be obtained from\ src/utils/cpgIslandExt/.\ The cpg_lh program binary can be obtained from: http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/cpg_lh (choose "save file")\

\ \

Credits

\ \

This track was generated using a modification of a program developed by G. Miklem and L. Hillier \ (unpublished).

\ \

References

\ \

\ Gardiner-Garden M, Frommer M.\ \ CpG islands in vertebrate genomes.\ J Mol Biol. 1987 Jul 20;196(2):261-82.\ PMID: 3656447\

\ regulation 1 html cpgIslandSuper\ longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green)\ parent cpgIslandSuper hide\ priority 2\ shortLabel Unmasked CpG\ track cpgIslandExtUnmasked\ covidHgiGwas COVID GWAS v3 bigLolly 9 + GWAS meta-analyses from the COVID-19 Host Genetics Initiative 0 2.1 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,

Description

\

\ This track set shows GWAS meta-analyses from the \ \ COVID-19 Host Genetics Initiative (HGI): \ a collaborative effort to facilitate \ the generation, analysis and sharing of COVID-19 host genetics research.\ The COVID-19 HGI organizes meta-analyses across multiple studies contributed by \ partners world-wide\ to identify the genetic determinants of SARS-CoV-2 infection susceptibility and disease severity \ and outcomes. Moreover, the COVID-19 HGI also aims to provide a platform for study partners to \ share analytical results in the form of summary statistics and/or individual level data where \ possible.\

\ \

\ The specific phenotypes studied by the COVID-19 HGI are those that benefit from maximal sample \ size: primary analysis on disease severity. Two meta-analyses are represented in this track:\

\ \
    \
  • ANA_C2_V2: covid vs. population (6696 cases from 18 studies)
    • \
  • ANA_B2_V2: hospitalized covid vs. population (3199 cases from 8 studies)
    • \
\ \

Display Conventions

\

\ Displayed items are colored by GWAS effect: red for positive, blue for negative. \ The height of the item reflects the effect size. The effect size, defined as the \ contribution of a SNP to the genetic variance of the trait, was measured as beta coefficient \ (beta). The higher the absolute value of the beta coefficient, the stronger the effect.\ The color saturation indicates statistical significance: p-values smaller than 1e-5\ are brightly colored (bright red\   \ , bright blue\   \ ),\ those with less significance (p >= 1e-5) are paler (light red\   \ , light blue\   \ ). For better visualization of the data, only SNPs with p-values smaller than 1e-3 are \ displayed by default. \

\ \

\ Each track has separate display controls and data can be filtered according to the\ number of studies, minimum -log10 p-value, and the\ effect size (beta coefficient), using the track Configure options.\

\ \

\ Mouseover on items shows the rs ID (or chrom:pos if none assigned), both the non-effect \ and effect alleles, the effect size (beta coefficient), the p-value, and the number of \ studies.\ Additional information on each variant can be found on the details page by clicking on the item.\

\ \

Methods

\

\ COVID-19 Host Genetics Initiative (HGI) GWAS meta-analysis round 3 (July 2020) results were used \ in this study. Each participating study partner submitted GWAS summary statistics for up to four \ of the COVID-19 phenotype definitions.\

\

\ Data were generated from genome-wide SNP array and whole exome and genome\ sequencing, leveraging the impact of both common and rare variants. The statistical analysis\ performed takes into account differences between sex, ancestry, and date of sample collection. \ Alleles were harmonized across studies and reported allele frequencies are based on gnomAD \ version 3.0 reference data. Most study partners used the SAIGE GWAS pipeline in order \ to generate summary statistics used for the COVID-19 HGI meta-analysis. The summary statistics \ of individual studies were manually examined for inflation, \ deflation, and excessive number of false positives. Qualifying summary statistics were filtered for \ INFO > 0.6 and MAF > 0.0001 prior to meta-analyzing the entirety of the data. \ The meta-analysis was done using inverse variance weighting of effects method, accounting for \ strand differences and allele flips in the individual studies. \

\

\ The meta-analysis results of variants appearing in at least three studies (analysis C2) or two \ studies (all other analyses) were made publicly available.\ The meta-analysis software and workflow are available here. More information about the \ prospective studies, processing pipeline, results and data sharing can be found \ here.\

\ \ \

Data Access

\

\ The data underlying these tracks and summary statistics results are publicly available in \ COVID19-hg Release 3 (June 2020).\ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. \ Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.\

\ \

Credits

\

\ Thanks to the COVID-19 Host Genetics Initiative contributors and project leads for making these \ data available, and in particular to Rachel Liao, Juha Karjalainen, and Kumar Veerapen at the \ Broad Institute for their review and input during browser track development.\

\ \

References

\ \

\ COVID-19 Host Genetics Initiative.\ \ The COVID-19 Host Genetics Initiative, a global initiative to elucidate the role of host genetic\ factors in susceptibility and severity of the SARS-CoV-2 virus pandemic.\ Eur J Hum Genet. 2020 Jun;28(6):715-718.\ PMID: 32404885; PMC: PMC7220587\

\ \ \ \ varRep 1 autoScale on\ bedNameLabel SNP\ chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22\ compositeTrack on\ filter._effectSizeAbs 0\ filter.effectSize -13:21\ filter.pValueLog 3\ filter.sourceCount 1\ filterByRange.effectSize on\ filterLabel._effectSizeAbs Minimum effect size +-\ filterLabel.effectSize Effect size range\ filterLabel.sourceCount Minimum number of studies\ filterLimits.effectSize -13:21\ group varRep\ lollyField 21\ longLabel GWAS meta-analyses from the COVID-19 Host Genetics Initiative\ maxHeightPixels 48:75:128\ maxItems 500000\ mouseOver $name $ref/$alt effect $effectSize pval $pValue studies $sourceCount\ noScoreFilter on\ priority 2.1\ shortLabel COVID GWAS v3\ track covidHgiGwas\ type bigLolly 9 +\ viewLimits -13:21\ visibility hide\ covidMuts COVID Rare Harmful Var bigBed 12 + Rare variants underlying COVID-19 severity and susceptibility from the COVID Human Genetics Effort 0 2.2 179 0 0 217 127 127 0 0 0

Description

\

\ This track shows rare variants associated with monogenic congenital defects of immunity to \ the SARS-CoV-2 virus identified by the \ COVID Human Genetic Effort. \ This international consortium aims to discover truly causative variations: those underlying \ severe forms of COVID-19 in previously healthy individuals, and those that make certain \ individuals resistant to infection by the SARS-CoV2 virus despite repeated exposure.\

\

\ The major feature of the small set of variants in this track is that they are functionally tested\ to be deleterious and genetically tested to be disease-causing. \ Specifically, rare variants were predicted to be loss-of-function at human loci known to govern\ interferon (IFN) immunity to influenza virus in patients with life-threatening COVID-19 pneumonia, \ relative to subjects with asymptomatic or benign infection.\ These genetic defects display incomplete penetrance for influenza respiratory distress and only\ appear clinically upon infection with the more virulent SARS-CoV-2.\

\ \

Display Conventions

\

\ Only eight genes with 23 variants are contained in this track. \ Use the links below to navigate to the gene of interest or view \ all eight genes together using the following sessions for \ hg38 or\ hg19.\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
Gene NameHuman GRCh37/hg19 AssemblyHuman GRCh38/hg38 Assembly
TLR3\ chr4:186990309-187006252\ chr4:186069152-186088069
IRF7\ chr11:612555-615999\ chr11:612591-615970
UNC93B1\ chr11:67758575-67771593\ chr11:67991100-68004097
TBK1\ chr12:64845840-64895899\ chr12:64452120-64502114
TICAM1\ chr19:4815936-4831754\ chr19:4815932-4831704
IRF3\ chr19:50162826-50169132\ chr19:49659570-49665875
IFNAR1\ chr21:34697214-34732128\ chr21:33324970-33359864
IFNAR2\ chr21:34602231-34636820\ chr21:33229974-33264525
\ \

Methods

\

\ This track uses variant calls in autosomal IFN-related genes from whole exome and genome data \ with a MAF lower than 0.001 (gnomAD v2.1.1) and experimental demonstration of loss-of-function.\ The patient population studied consisted of 659 patients with life-threatening COVID-19 pneumonia \ relative to 534 subjects with asymptomatic or benign infection of varying ethnicities. \ Variants underlying autosomal-recessive or autosomal-dominant deficiencies were identified in \ 23 patients (3.5%) 17 to 77 years of age.\ The proportion of individuals carrying at least one variant was compared between severe cases \ and control cases by means of logistic regression with the likelihood ratio test.\ Principal Component Analysis (PCA) was conducted with Plink v1.9 software on whole exome and \ genome sequencing data with the 1000 Genomes (1kG) Project phase 3 public database as reference.\ Analysis of enrichment in rare synonymous variants of the genes was performed to check the \ calibration of the burden test. \ The odds ratio was also estimated by logistic regression and adjusted for ethnic heterogeneity.\

\ \

Data Access

\

\ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator.\ Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.\

\ \

Credits

\

\ Thanks to the COVID Human Genetic Effort contributors for making these data available, and in\ particular to Qian Zhang at the Rockefeller University for review and input during browser track\ development.\

\ \

References

\

\ Zhang Q, Bastard P, Liu Z, Le Pen J, Moncada-Velez M, Chen J, Ogishi M, Sabli IKD, Hodeib S, Korol C\ et al.\ \ Inborn errors of type I IFN immunity in patients with life-threatening COVID-19.\ Science. 2020 Sep 24;.\ PMID: 32972995\

\ \ phenDis 1 bigDataUrl /gbdb/hg38/covidMuts/covidMuts.bb\ color 179,0,0\ defaultLabelFields gene, name\ group phenDis\ labelFields gene, name\ longLabel Rare variants underlying COVID-19 severity and susceptibility from the COVID Human Genetics Effort\ mouseOver $gene $name $rsId Genotype: $genotype; Zygosity: $zygo ; Inheritance: $inhMode\ multiRegionsBedUrl /gbdb/hg38/covidMuts/covidMuts.regions.bed\ noScoreFilter on\ priority 2.2\ shortLabel COVID Rare Harmful Var\ track covidMuts\ type bigBed 12 +\ visibility hide\ chainMelGal5 Turkey Chain chain melGal5 Turkey (Nov. 2014 (Turkey_5.0/melGal5)) Chained Alignments 3 3 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Turkey (Nov. 2014 (Turkey_5.0/melGal5)) Chained Alignments\ otherDb melGal5\ parent vertebrateChainNetViewchain off\ shortLabel Turkey Chain\ subGroups view=chain species=s006 clade=c01\ track chainMelGal5\ type chain melGal5\ chainPanPan3 Bonobo Chain chain panPan3 Bonobo (May 2020 (Mhudiblu_PPA_v0/panPan3)) Chained Alignments 3 3 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Bonobo (May 2020 (Mhudiblu_PPA_v0/panPan3)) Chained Alignments\ otherDb panPan3\ parent primateChainNetViewchain off\ shortLabel Bonobo Chain\ subGroups view=chain species=s007b clade=c00\ track chainPanPan3\ type chain panPan3\ chainGalVar1 Malayan flying lemur Chain chain galVar1 Malayan flying lemur (Jun. 2014 (G_variegatus-3.0.2/galVar1)) Chained Alignments 3 3 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Malayan flying lemur (Jun. 2014 (G_variegatus-3.0.2/galVar1)) Chained Alignments\ otherDb galVar1\ parent placentalChainNetViewchain off\ shortLabel Malayan flying lemur Chain\ subGroups view=chain species=s006 clade=c00\ track chainGalVar1\ type chain galVar1\ encTfChipPkENCFF208AXT A549 CBX2 narrowPeak Transcription Factor ChIP-seq Peaks of CBX2 in A549 from ENCODE 3 (ENCFF208AXT) 0 3 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of CBX2 in A549 from ENCODE 3 (ENCFF208AXT)\ parent encTfChipPk off\ shortLabel A549 CBX2\ subGroups cellType=A549 factor=CBX2\ track encTfChipPkENCFF208AXT\ cloneEndABC12 ABC12 bed 12 Agencourt fosmid library 12 0 3 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 12\ parent cloneEndSuper off\ priority 3\ shortLabel ABC12\ subGroups source=agencourt\ track cloneEndABC12\ type bed 12\ visibility hide\ gtexCovAdrenalGland Adren Gland bigWig Adrenal Gland 0 3 143 188 143 199 221 199 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-Y5LM-0126-SM-4VBRL.Adrenal_Gland.RNAseq.bw\ color 143,188,143\ longLabel Adrenal Gland\ parent gtexCov\ shortLabel Adren Gland\ track gtexCovAdrenalGland\ genetiSureCytoCghSnp8x60 Agilent GenetiSure Cyto CGH 8x60 bigBed 4 Agilent GenetiSure Cyto CGH 8x60K 085590 20200302 3 3 0 0 0 127 127 127 0 0 0 varRep 1 bigDataUrl /gbdb/hg38/snpCnvArrays/agilent/hg38.GenetiSure_Cyto_CGH_Microarray_8x60K_085590_D_BED_20200302.bb\ longLabel Agilent GenetiSure Cyto CGH 8x60K 085590 20200302\ parent genotypeArrays on\ priority 3\ shortLabel Agilent GenetiSure Cyto CGH 8x60\ track genetiSureCytoCghSnp8x60\ type bigBed 4\ visibility pack\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep2LK2_CNhs13358_tpm_fwd AorticSmsToFgf2_00hr00minBr2+ bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep2 (LK2)_CNhs13358_12740-135I4_forward 1 3 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep2%20%28LK2%29.CNhs13358.12740-135I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep2 (LK2)_CNhs13358_12740-135I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12740-135I4 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToFgf2_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep2LK2_CNhs13358_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep2LK2_CNhs13358_ctss_fwd AorticSmsToFgf2_00hr00minBr2+ bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep2 (LK2)_CNhs13358_12740-135I4_forward 0 3 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep2%20%28LK2%29.CNhs13358.12740-135I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep2 (LK2)_CNhs13358_12740-135I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12740-135I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep2LK2_CNhs13358_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4\ urlLabel FANTOM5 Details:\ cons30wayViewphyloP Basewise Conservation (phyloP) bed 4 Mammals Multiz Alignment & Conservation (27 primates) 2 3 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Mammals Multiz Alignment & Conservation (27 primates)\ parent cons30way\ shortLabel Basewise Conservation (phyloP)\ track cons30wayViewphyloP\ view phyloP\ viewLimits -3:1\ viewLimitsMax -14.191:1.199\ visibility full\ iscaBenignGainCum Benign Gain bedGraph 4 ClinGen CNVs: Benign Gain Coverage 2 3 0 0 200 127 127 227 0 0 0 phenDis 0 color 0,0,200\ longLabel ClinGen CNVs: Benign Gain Coverage\ parent iscaViewTotal\ shortLabel Benign Gain\ subGroups view=cov class=ben level=sub\ track iscaBenignGainCum\ bismap50Pos Bismap S50 + bigBed 6 Single-read mappability with 50-mers after bisulfite conversion (forward strand) 0 3 240 120 80 247 187 167 0 0 0 map 1 bigDataUrl /gbdb/hg38/hoffmanMappability/k50.C2T-Converted.bb\ color 240,120,80\ longLabel Single-read mappability with 50-mers after bisulfite conversion (forward strand)\ parent bismapBigBed off\ priority 3\ shortLabel Bismap S50 +\ subGroups view=SR\ track bismap50Pos\ visibility hide\ BLCA BLCA bigLolly 12 + Bladder Urothelial Carcinoma 0 3 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/BLCA.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Bladder Urothelial Carcinoma\ parent gdcCancer off\ priority 3\ shortLabel BLCA\ track BLCA\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ lincRNAsCTBrain Brain bed 5 + lincRNAs from brain 1 3 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from brain\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Brain\ subGroups view=lincRNAsRefseqExp tissueType=brain\ track lincRNAsCTBrain\ clinGenGeneDisease ClinGen Validity bigBed 9 + ClinGen Gene-Disease Validity Classification 3 3 0 0 0 127 127 127 0 0 0 phenDis 1 bedNameLabel Associated Disease\ bigDataUrl /gbdb/hg38/bbi/clinGen/clinGenGeneDisease.bb\ filterLabel.Classification ClinGen Gene-Disease Validity Classification\ filterLabel.Inheritance Inheritance Pattern\ filterLabel.SOPversion ClinGen SOP Version Number\ filterValues.Classification Definitive,Strong,Moderate,Limited,Animal Model Only,No Reported Evidence,Disputed,Refuted\ filterValues.Inheritance Autosomal Dominant,Autosomal Recessive,Semidominant,X-Linked,X-linked recessive,Other\ filterValues.SOPversion SOP4,SOP5,SOP6,SOP7\ itemRgb on\ longLabel ClinGen Gene-Disease Validity Classification\ mouseOverField Mouseover\ noScoreFilter on\ parent clinGenComp on\ priority 3\ searchIndex name,geneSymbol,HGNCid,MONDOid,Classification\ sepFields MONDOid,SOPversion\ shortLabel ClinGen Validity\ skipFields Mouseover\ track clinGenGeneDisease\ type bigBed 9 +\ urls geneSymbol="https://search.clinicalgenome.org/kb/genes/$$" ClinGenURL="https://search.clinicalgenome.org/kb/gene-validity/$$" HGNCid="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$$" MONDOid="https://monarchinitiative.org/disease/$$"\ visibility pack\ cons30way Cons 30 Primates bed 4 Mammals Multiz Alignment & Conservation (27 primates) 0 3 0 0 0 127 127 127 0 0 0

Description

\

\ This track shows multiple alignments of 30 species and measurements of\ evolutionary conservation using\ two methods (phastCons and phyloP) from the\ \ PHAST package, for all thirty species.\ The multiple alignments were generated using multiz and\ other tools in the UCSC/Penn State Bioinformatics\ comparative genomics alignment pipeline.\ Conserved elements identified by phastCons are also displayed in\ this track.\

\

\ PhastCons (which has been used in previous Conservation tracks) is a hidden\ Markov model-based method that estimates the probability that each\ nucleotide belongs to a conserved element, based on the multiple alignment.\ It considers not just each individual alignment column, but also its\ flanking columns. By contrast, phyloP separately measures conservation at\ individual columns, ignoring the effects of their neighbors. As a\ consequence, the phyloP plots have a less smooth appearance than the\ phastCons plots, with more "texture" at individual sites. The two methods\ have different strengths and weaknesses. PhastCons is sensitive to "runs"\ of conserved sites, and is therefore effective for picking out conserved\ elements. PhyloP, on the other hand, is more appropriate for evaluating\ signatures of selection at particular nucleotides or classes of nucleotides\ (e.g., third codon positions, or first positions of miRNA target sites).\

\

\ Another important difference is that phyloP can measure acceleration\ (faster evolution than expected under neutral drift) as well as\ conservation (slower than expected evolution). In the phyloP plots, sites\ predicted to be conserved are assigned positive scores (and shown in blue),\ while sites predicted to be fast-evolving are assigned negative scores (and\ shown in red). The absolute values of the scores represent -log p-values\ under a null hypothesis of neutral evolution. The phastCons scores, by\ contrast, represent probabilities of negative selection and range between 0\ and 1.\

\

\ Both phastCons and phyloP treat alignment gaps and unaligned nucleotides as\ missing data.\

\

\ See also: lastz parameters and other details \ and chain minimum score and gap parameters used in these alignments.\

\ \

\ Missing sequence in the assemblies is highlighted in the track display\ by regions of yellow when zoomed out and Ns displayed at base\ level (see Gap Annotation, below).

\

\

\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
OrganismSpeciesRelease dateUCSC versionalignment type
HumanHomo sapiens\ Dec. 2013 (GRCh38/hg38)Dec. 2013 (GRCh38/hg38)MAF Net
ChimpPan troglodytes\ May 2016 (Pan_tro 3.0/panTro5)May 2016 (Pan_tro 3.0/panTro5)MAF Net
BonoboPan paniscus\ Aug. 2015 (MPI-EVA panpan1.1/panPan2)Aug. 2015 (MPI-EVA panpan1.1/panPan2)MAF Net
GorillaGorilla gorilla gorilla\ Mar. 2016 (GSMRT3/gorGor5)Mar. 2016 (GSMRT3/gorGor5)MAF Net
OrangutanPongo pygmaeus abelii\ July 2007 (WUGSC 2.0.2/ponAbe2)July 2007 (WUGSC 2.0.2/ponAbe2)MAF Net
GibbonNomascus leucogenys\ Oct. 2012 (GGSC Nleu3.0/nomLeu3)Oct. 2012 (GGSC Nleu3.0/nomLeu3)MAF Net
RhesusMacaca mulatta\ Nov. 2015 (BCM Mmul_8.0.1/rheMac8)Nov. 2015 (BCM Mmul_8.0.1/rheMac8)MAF Net
Crab-eating macaqueMacaca fascicularis\ Jun. 2013 (Macaca_fascicularis_5.0/macFas5)Jun. 2013 (Macaca_fascicularis_5.0/macFas5)MAF Net
Pig-tailed macaqueMacaca nemestrina\ Mar. 2015 (Mnem_1.0/macNem1)Mar. 2015 (Mnem_1.0/macNem1)MAF Net
Sooty mangabeyCercocebus atys\ Mar. 2015 (Caty_1.0/cerAty1)Mar. 2015 (Caty_1.0/cerAty1)MAF Net
BaboonPapio anubis\ Feb. 2013 (Baylor Panu_2.0/papAnu3)Feb. 2013 (Baylor Panu_2.0/papAnu3)MAF Net
Green monkeyChlorocebus sabaeus\ Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2)Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2)MAF Net
DrillMandrillus leucophaeus\ Mar. 2015 (Mleu.le_1.0/manLeu1)Mar. 2015 (Mleu.le_1.0/manLeu1)MAF Net
Proboscis monkeyNasalis larvatus\ Nov. 2014 (Charlie1.0/nasLar1)Nov. 2014 (Charlie1.0/nasLar1)MAF Net
Angolan colobusColobus angolensis palliatus\ Mar. 2015 (Cang.pa_1.0/colAng1)Mar. 2015 (Cang.pa_1.0/colAng1)MAF Net
Golden snub-nosed monkeyRhinopithecus roxellana\ Oct. 2014 (Rrox_v1/rhiRox1)Oct. 2014 (Rrox_v1/rhiRox1)MAF Net
Black snub-nosed monkeyRhinopithecus bieti\ Aug. 2016 (ASM169854v1/rhiBie1)Aug. 2016 (ASM169854v1/rhiBie1)MAF Net
MarmosetCallithrix jacchus\ March 2009 (WUGSC 3.2/calJac3)March 2009 (WUGSC 3.2/calJac3)MAF Net
Squirrel monkeySaimiri boliviensis\ Oct. 2011 (Broad/saiBol1)Oct. 2011 (Broad/saiBol1)MAF Net
White-faced sapajouCebus capucinus imitator\ Apr. 2016 (Cebus_imitator-1.0/cebCap1)Apr. 2016 (Cebus_imitator-1.0/cebCap1)MAF Net
Ma's night monkeyAotus nancymaae\ Jun. 2017 (Anan_2.0/aotNan1)Jun. 2017 (Anan_2.0/aotNan1)MAF Net
TarsierTarsius syrichta\ Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2)Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2)MAF Net
Mouse lemurMicrocebus murinus\ Feb. 2017 (Mmur_3.0/micMur3)Feb. 2017 (Mmur_3.0/micMur3)MAF Net
Coquerel's sifakaPropithecus coquereli\ Mar. 2015 (Pcoq_1.0/proCoq1)Mar. 2015 (Pcoq_1.0/proCoq1)MAF Net
Black lemurEulemur macaco\ Aug. 2015 (Emacaco_refEf_BWA_oneround/eulMac1)Aug. 2015 (Emacaco_refEf_BWA_oneround/eulMac1)MAF Net
Sclater's lemurEulemur flavifrons\ Aug. 2015 (Eflavifronsk33QCA/eulFla1)Aug. 2015 (Eflavifronsk33QCA/eulFla1)MAF Net
BushbabyOtolemur garnettii\ Mar. 2011 (Broad/otoGar3)Mar. 2011 (Broad/otoGar3)MAF Net
MouseMus musculus\ Dec. 2011 (GRCm38/mm10)Dec. 2011 (GRCm38/mm10)MAF Net
DogCanis lupus familiaris\ Sep. 2011 (Broad CanFam3.1/canFam3)Sep. 2011 (Broad CanFam3.1/canFam3)MAF Net
ArmadilloDasypus novemcinctus\ Dec. 2011 (Baylor/dasNov3)Dec. 2011 (Baylor/dasNov3)MAF Net

\ Table 1. Genome assemblies included in the 30-way Conservation track.\

\ \ Downloads for data in this track are available:\ \ \

Display Conventions and Configuration

\

\ In full and pack display modes, conservation scores are displayed as a\ wiggle track (histogram) in which the height reflects the\ value of the score.\ The conservation wiggles can be configured in a variety of ways to\ highlight different aspects of the displayed information.\ Click the Graph configuration help link for an explanation\ of the configuration options.

\

\ Pairwise alignments of each species to the human genome are\ displayed below the conservation histogram as a grayscale density plot (in\ pack mode) or as a wiggle (in full mode) that indicates alignment quality.\ In dense display mode, conservation is shown in grayscale using\ darker values to indicate higher levels of overall conservation\ as scored by phastCons.

\

\ Checkboxes on the track configuration page allow selection of the\ species to include in the pairwise display.\ Configuration buttons are available to select all of the species\ (Set all), deselect all of the species (Clear all), or\ use the default settings (Set defaults).\ Note that excluding species from the pairwise display does not alter the\ the conservation score display.

\

\ To view detailed information about the alignments at a specific\ position, zoom the display in to 30,000 or fewer bases, then click on\ the alignment.

\ \

Gap Annotation

\

\ The Display chains between alignments configuration option\ enables display of gaps between alignment blocks in the pairwise alignments in\ a manner similar to the Chain track display. The following\ conventions are used:\

    \
  • Single line: No bases in the aligned species. Possibly due to a\ lineage-specific insertion between the aligned blocks in the human genome\ or a lineage-specific deletion between the aligned blocks in the aligning\ species.\
  • Double line: Aligning species has one or more unalignable bases in\ the gap region. Possibly due to excessive evolutionary distance between\ species or independent indels in the region between the aligned blocks in both\ species.\
  • Pale yellow coloring: Aligning species has Ns in the gap region.\ Reflects uncertainty in the relationship between the DNA of both species, due\ to lack of sequence in relevant portions of the aligning species.\

\ \

Genomic Breaks

\

\ Discontinuities in the genomic context (chromosome, scaffold or region) of the\ aligned DNA in the aligning species are shown as follows:\

    \
  • \ Vertical blue bar: Represents a discontinuity that persists indefinitely\ on either side, e.g. a large region of DNA on either side of the bar\ comes from a different chromosome in the aligned species due to a large scale\ rearrangement.\
  • \ Green square brackets: Enclose shorter alignments consisting of DNA from\ one genomic context in the aligned species nested inside a larger chain of\ alignments from a different genomic context. The alignment within the\ brackets may represent a short misalignment, a lineage-specific insertion of a\ transposon in the human genome that aligns to a paralogous copy somewhere\ else in the aligned species, or other similar occurrence.\

\ \

Base Level

\

\ When zoomed-in to the base-level display, the track shows the base\ composition of each alignment.\ The numbers and symbols on the Gaps\ line indicate the lengths of gaps in the human sequence at those\ alignment positions relative to the longest non-human sequence.\ If there is sufficient space in the display, the size of the gap is shown.\ If the space is insufficient and the gap size is a multiple of 3, a\ "*" is displayed; other gap sizes are indicated by "+".

\

\ Codon translation is available in base-level display mode if the\ displayed region is identified as a coding segment. To display this annotation,\ select the species for translation from the pull-down menu in the Codon\ Translation configuration section at the top of the page. Then, select one of\ the following modes:\

    \
  • \ No codon translation: The gene annotation is not used; the bases are\ displayed without translation.\
  • \ Use default species reading frames for translation: The annotations from\ the genome displayed in the Default species to establish reading frame\ pull-down menu are used to translate all the aligned species present in the\ alignment.\
  • \ Use reading frames for species if available, otherwise no translation:\ Codon translation is performed only for those species where the region is\ annotated as protein coding.\
  • Use reading frames for species if available, otherwise use default species:\ Codon translation is done on those species that are annotated as being protein\ coding over the aligned region using species-specific annotation; the remaining\ species are translated using the default species annotation.\

\

\ Codon translation uses the following gene tracks as the basis for\ translation, depending on the species chosen (Table 2).\ \

\ \ \ \ \ \
Gene TrackSpecies
Known Geneshuman, mouse
Ensembl Genes v78baboon, bushbaby, chimp, dog, gorilla, marmoset, mouse lemur, orangutan, tree shrew
RefSeqcrab-eating macaque, rhesus
no annotationbonobo, green monkey, gibbon, proboscis monkey, golden snub-nosed monkey, squirrel monkey, tarsier
\ Table 2. Gene tracks used for codon translation.\

\ \

Methods

\

\ Pairwise alignments with the human genome were generated for\ each species using lastz from repeat-masked genomic sequence.\ Pairwise alignments were then linked into chains using a dynamic programming\ algorithm that finds maximally scoring chains of gapless subsections\ of the alignments organized in a kd-tree.\ The scoring matrix and parameters for pairwise alignment and chaining\ were tuned for each species based on phylogenetic distance from the reference.\ High-scoring chains were then placed along the genome, with\ gaps filled by lower-scoring chains, to produce an alignment net.\ For more information about the chaining and netting process and\ parameters for each species, see the description pages for the Chain and Net\ tracks.

\

\ An additional filtering step was introduced in the generation of the 30-way\ conservation track to reduce the number of paralogs and pseudogenes from the\ high-quality assemblies and the suspect alignments from the low-quality\ assemblies.\

\

\

\ \ \ \
type of net alignmentSpecies
Syntenic Netbaboon, chimp, dog, gibbon, green monkey, crab-eating macaque, marmoset, mouse, orangutan, rhesus
Reciprocal best Netbushbaby, bonobo, gorilla, golden snub-nosed monkey, mouse lemur, proboscis monkey, squirrel monkey, tarsier, tree shrew
\ Table 3. Type of Net alignment\
\

\

\ The resulting best-in-genome pairwise alignments\ were progressively aligned using multiz/autoMZ,\ following the tree topology diagrammed above, to produce multiple alignments.\ The multiple alignments were post-processed to\ add annotations indicating alignment gaps, genomic breaks,\ and base quality of the component sequences.\ The annotated multiple alignments, in MAF format, are available for\ bulk download.\ An alignment summary table containing an entry for each\ alignment block in each species was generated to improve\ track display performance at large scales.\ Framing tables were constructed to enable\ visualization of codons in the multiple alignment display.

\ \

Phylogenetic Tree Model

\

\ Both phastCons and phyloP are phylogenetic methods that rely\ on a tree model containing the tree topology, branch lengths representing\ evolutionary distance at neutrally evolving sites, the background distribution\ of nucleotides, and a substitution rate matrix.\ The\ all species tree model for this track was\ generated using the phyloFit program from the PHAST package\ (REV model, EM algorithm, medium precision) using multiple alignments of\ 4-fold degenerate sites extracted from the 30-way alignment\ (msa_view). The 4d sites were derived from the Xeno RefSeq gene set,\ filtered to select single-coverage long transcripts.\

\

\ This same tree model was used in the phyloP calculations, however their\ background frequencies were modified to maintain reversibility.\ The resulting tree model for\ all species.\

\

PhastCons Conservation

\

\ The phastCons program computes conservation scores based on a phylo-HMM, a\ type of probabilistic model that describes both the process of DNA\ substitution at each site in a genome and the way this process changes from\ one site to the next (Felsenstein and Churchill 1996, Yang 1995, Siepel and\ Haussler 2005). PhastCons uses a two-state phylo-HMM, with a state for\ conserved regions and a state for non-conserved regions. The value plotted\ at each site is the posterior probability that the corresponding alignment\ column was "generated" by the conserved state of the phylo-HMM. These\ scores reflect the phylogeny (including branch lengths) of the species in\ question, a continuous-time Markov model of the nucleotide substitution\ process, and a tendency for conservation levels to be autocorrelated along\ the genome (i.e., to be similar at adjacent sites). The general reversible\ (REV) substitution model was used. Unlike many conservation-scoring programs,\ phastCons does not rely on a sliding window\ of fixed size; therefore, short highly-conserved regions and long moderately\ conserved regions can both obtain high scores.\ More information about\ phastCons can be found in Siepel et al. (2005).

\

\ The phastCons parameters used were: expected-length=45,\ target-coverage=0.3, rho=0.3.

\ \

PhyloP Conservation

\

\ The phyloP program supports several different methods for computing\ p-values of conservation or acceleration, for individual nucleotides or\ larger elements\ (http://compgen.cshl.edu/phast/).\ Here it was used\ to produce separate scores at each base (--wig-scores option), considering\ all branches of the phylogeny rather than a particular subtree or lineage\ (i.e., the --subtree option was not used). The scores were computed by\ performing a likelihood ratio test at each alignment column (--method LRT),\ and scores for both conservation and acceleration were produced (--mode CONACC).\

\

Conserved Elements

\

\ The conserved elements were predicted by running phastCons with the\ --viterbi option. The predicted elements are segments of the alignment\ that are likely to have been "generated" by the conserved state of the\ phylo-HMM. Each element is assigned a log-odds score equal to its log\ probability under the conserved model minus its log probability under the\ non-conserved model. The "score" field associated with this track contains\ transformed log-odds scores, taking values between 0 and 1000. (The scores\ are transformed using a monotonic function of the form a * log(x) + b.) The\ raw log odds scores are retained in the "name" field and can be seen on the\ details page or in the browser when the track's display mode is set to\ "pack" or "full".\

\ \

Credits

\

This track was created using the following programs:\

    \
  • Alignment tools: blastz and multiz by Minmei Hou, Scott Schwartz and Webb\ Miller of the Penn State Bioinformatics Group\
  • Chaining and Netting: axtChain, chainNet by Jim Kent at UCSC\
  • Conservation scoring: phastCons, phyloP, phyloFit, tree_doctor, msa_view and\ other programs in PHAST by\ Adam Siepel at Cold Spring Harbor Laboratory (original development\ done at the Haussler lab at UCSC).\
  • MAF Annotation tools: mafAddIRows by Brian Raney, UCSC; mafAddQRows\ by Richard Burhans, Penn State; genePredToMafFrames by Mark Diekhans, UCSC\
  • Tree image generator: phyloPng by Galt Barber, UCSC\
  • Conservation track display: Kate Rosenbloom, Hiram Clawson (wiggle\ display), and Brian Raney (gap annotation and codon framing) at UCSC\
\

\

The phylogenetic tree is based on Murphy et al. (2001) and general\ consensus in the vertebrate phylogeny community as of March 2007.\

\ \

References

\ \

Phylo-HMMs, phastCons, and phyloP:

\ \

\ Felsenstein J, Churchill GA.\ A Hidden Markov Model approach to\ variation among sites in rate of evolution.\ Mol Biol Evol. 1996 Jan;13(1):93-104.\ PMID: 8583911\

\ \

\ Pollard KS, Hubisz MJ, Rosenbloom KR, Siepel A.\ \ Detection of nonneutral substitution rates on mammalian phylogenies.\ Genome Res. 3010 Jan;30(1):110-21.\ PMID: 19858363; PMC: PMC2798823\

\ \

\ Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K,\ Clawson H, Spieth J, Hillier LW, Richards S, et al.\ Evolutionarily conserved elements in vertebrate, insect, worm,\ and yeast genomes.\ Genome Res. 2005 Aug;15(8):1034-50.\ PMID: 16024819; PMC: PMC1182216\

\ \

\ Siepel A, Haussler D.\ Phylogenetic Hidden Markov Models.\ In: Nielsen R, editor. Statistical Methods in Molecular Evolution.\ New York: Springer; 2005. pp. 325-351\

\ \

\ Yang Z.\ A space-time process model for the evolution of DNA\ sequences.\ Genetics. 1995 Feb;139(2):993-1005.\ PMID: 7713447; PMC: PMC1306396\

\ \

Chain/Net:

\

\ Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\ Evolution's cauldron:\ duplication, deletion, and rearrangement in the mouse and human genomes.\ Proc Natl Acad Sci U S A. 2003 Sep 30;100(30):11484-9.\ PMID: 14500911; PMC: PMC308784\

\ \

Multiz:

\

\ Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, Roskin KM,\ Baertsch R, Rosenbloom K, Clawson H, Green ED, et al.\ Aligning multiple genomic sequences with the threaded blockset aligner.\ Genome Res. 2004 Apr;14(4):708-15.\ PMID: 15060014; PMC: PMC383327\

\ \

\ Harris RS.\ Improved pairwise alignment of genomic DNA.\ Ph.D. Thesis. Pennsylvania State University, USA. 2007.\

\ \

Blastz:

\

\ Chiaromonte F, Yap VB, Miller W.\ Scoring pairwise genomic sequence alignments.\ Pac Symp Biocomput. 2002:115-26.\ PMID: 11928468\

\ \

\ Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC,\ Haussler D, Miller W.\ Human-mouse alignments with BLASTZ.\ Genome Res. 2003 Jan;13(1):103-7.\ PMID: 12529312; PMC: PMC430961\

\ \

Phylogenetic Tree:

\

\ Murphy WJ, Eizirik E, O'Brien SJ, Madsen O, Scally M, Douady CJ, Teeling E,\ Ryder OA, Stanhope MJ, de Jong WW, Springer MS.\ Resolution of the early placental mammal radiation using Bayesian phylogenetics.\ Science. 2001 Dec 14;294(5550):2348-51.\ PMID: 12743200\

\ compGeno 1 compositeTrack on\ dragAndDrop subTracks\ group compGeno\ longLabel Mammals Multiz Alignment & Conservation (27 primates)\ priority 3\ shortLabel Cons 30 Primates\ subGroup1 view Views align=Multiz_Alignments phyloP=Basewise_Conservation_(phyloP) phastcons=Element_Conservation_(phastCons) elements=Conserved_Elements\ track cons30way\ type bed 4\ visibility hide\ cons30wayViewelements Conserved Elements bed 4 Mammals Multiz Alignment & Conservation (27 primates) 1 3 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Mammals Multiz Alignment & Conservation (27 primates)\ parent cons30way\ shortLabel Conserved Elements\ track cons30wayViewelements\ view elements\ visibility dense\ cq8Vcf CQ-8 Variants vcfTabix CQ-8 Variants 0 3 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/problematic/highRepro/CQ-8.sort.vcf.gz\ longLabel CQ-8 Variants\ parent highReproVcfs\ shortLabel CQ-8 Variants\ subGroups view=vcfs\ track cq8Vcf\ type vcfTabix\ dbSnp153Mult dbSNP(153) Mult. bigDbSnp Short Genetic Variants from dbSNP Release 153 that Map to Multiple Genomic Loci 1 3 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg38/snp/dbSnp153Mult.bb\ defaultGeneTracks knownGene\ longLabel Short Genetic Variants from dbSNP Release 153 that Map to Multiple Genomic Loci\ parent dbSnp153ViewVariants off\ priority 3\ shortLabel dbSNP(153) Mult.\ subGroups view=variants\ track dbSnp153Mult\ dbVar_common_global dbVar Curated All Populations bigBed 9 + . NCBI dbVar Curated Common SVs: all populations 3 3 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg38/bbi/dbVar/common_global.bb\ longLabel NCBI dbVar Curated Common SVs: all populations\ parent dbVar_common on\ shortLabel dbVar Curated All Populations\ track dbVar_common_global\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ cons30wayViewphastcons Element Conservation (phastCons) bed 4 Mammals Multiz Alignment & Conservation (27 primates) 2 3 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Mammals Multiz Alignment & Conservation (27 primates)\ parent cons30way\ shortLabel Element Conservation (phastCons)\ track cons30wayViewphastcons\ view phastcons\ visibility full\ geneHancerInteractionsDoubleElite GH Interactions (DE) bigInteract Interactions between GeneHancer regulatory elements and genes (Double Elite) 2 3 0 0 0 127 127 127 0 0 0 https://www.genecards.org/cgi-bin/carddisp.pl?gene=$&keywords=$&prefilter=enhancers#enhancers regulation 1 bigDataUrl /gbdb/hg38/geneHancer/geneHancerInteractionsDoubleElite.v2.hg38.bb\ longLabel Interactions between GeneHancer regulatory elements and genes (Double Elite)\ parent ghInteraction on\ shortLabel GH Interactions (DE)\ subGroups set=a_ELITE view=c_I\ track geneHancerInteractionsDoubleElite\ urlLabel Interaction in GeneCards\ gnomadGenomesVariantsV3 gnomAD v3 vcfTabix Genome Aggregation Database (gnomAD) Genome Variants v3 0 3 0 0 0 127 127 127 0 0 0 http://gnomad.broadinstitute.org/variant/$s-$-$-$?dataset=gnomad_r3&ignore=$$

Description

\

\ The gnomAD v3 track shows variants and derived information from 71,702 whole genomes (and no exomes), all mapped to the \ GRCh38/hg38 reference sequence. Most of the genomes from v2 are included in v3. For more detailed \ information on gnomAD v3, see the related blog post.

\ \

\ The gnomAD v2 tracks show variants from 125,748 exomes and 15,708 whole genomes, all mapped to \ the GRCh37/hg19 reference sequence and lifted to the GRCh38/hg38 assembly. The data originate \ from 141,456 unrelated individuals sequenced as part of various population-genetic and \ disease-specific studies \ collected by the Genome Aggregation Database (gnomAD), release 2.1.1.\ Raw data from all studies have been reprocessed through a unified pipeline and jointly\ variant-called to increase consistency across projects. For more information on the processing\ pipeline and population annotations, see the following blog post\ and the 2.1.1 README.

\

\ gnomAD v2 data are based on the GRCh37/hg19 assembly. These tracks display the \ GRCh38/hg38 lift-over provided by gnomAD on their downloads site.\

\ \

On hg38 only, a subtrack "Gnomad mutational constraint" aka "Genome\ non-coding constraint of haploinsufficient variation (Gnocchi)" captures the\ depletion of variation caused by purifying natural selection.\ This is similar to negative selection on loss-of-function (LoF) for genes, but\ can be calculated for non-coding regions, too. Briefly, for any 1kbp window in\ the genome, a model based on trinucleotide sequence context, base-level\ methylation, and regional genomic features predicts expected number of mutations,\ and compares this number to the observed number of mutations using a Z-score (see Chen et al 2024 \ in the Reference section for details). The chrX scores were added as received from the authors, \ as there are no mutations available for chrX, they are more speculative than the ones on the autosomes.

\ \

\ For questions on the gnomAD data, also see the gnomAD FAQ.

\ \

Display Conventions

\
\
\
  • In mode, a vertical line is drawn at the position of\ each variant.
    • \
  • In mode, "ref" and "alt" alleles are\ displayed to the left of a vertical line with colored portions corresponding to allele counts.\ Hovering the mouse pointer over a variant pops up a display of alleles and counts.
    • \
    \ \

    Data Access

    \ \

    \ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that\ can be downloaded from our download server, subject\ to the conditions set forth by the gnomAD consortium (see below). Coverage values\ and constraint scores for the genome are in bigWig files in\ the coverage/ subdirectory. Variant VCFs can be found in the vcf/ subdirectory.

    \

    \ The data can also be found directly from the gnomAD downloads page. Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.

    \ \

    The mutational constraints score ("Gnocchi") was updated in October 2022 from a previous,\ now deprecated, pre-publication version. The old version can be found in our \ archive\ directory on the download server. It can be loaded by copying the URL into\ our "Custom tracks" input box.

    \ \

    Credits

    \

    \ Thanks to the Genome Aggregation\ Database Consortium for making these data available. The data are released under the ODC Open Database License\ (ODbL) as described here.\

    \ \

    References

    \ \

    \ Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alfoldi J, Wang Q, Collins RL, Laricchia KM,\ Ganna A, Birnbaum DP et al.\ Variation across \ 141,456 human exomes and genomes reveals the spectrum of loss-of-function intolerance across human \ protein-coding genes. doi: https://doi.org/10.1101/531210.\

    \

    \ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ Analysis of protein-coding\ genetic variation in 60,706 humans. Nature. 2016 Aug 17;536(7616):285-91.\ PMID: 27535533;\ PMC: PMC5018207\

    \

    \ Chen S, Francioli LC, Goodrich JK, Collins RL, Kanai M, Wang Q, Alföldi J, Watts NA, Vittal C,\ Gauthier LD et al.\ \ A genomic mutational constraint map using variation in 76,156 human genomes.\ Nature. 2024 Jan;625(7993):92-100.\ PMID: 38057664
    \ (We added the data in 2021, then later referenced the 2022 Biorxiv preprint, in which the track was not called "Gnocchi" yet)\

    \ \ varRep 1 bigDataUrl /gbdb/hg38/gnomAD/vcf/gnomad.genomes.r3.0.sites.vcf.gz\ configureByPopup off\ dataVersion Release 3.0 (October 16, 2019)\ html gnomad\ longLabel Genome Aggregation Database (gnomAD) Genome Variants v3\ maxWindowToDraw 200000\ parent gnomadVariants\ priority 3\ shortLabel gnomAD v3\ showHardyWeinberg on\ track gnomadGenomesVariantsV3\ type vcfTabix\ url http://gnomad.broadinstitute.org/variant/$s-$-$-$?dataset=gnomad_r3&ignore=$$\ urlLabel gnomAD:\ visibility hide\ grcExclusions GRC Exclusions bigBed 4 GRC Exclusion list: contaminations or false duplications 1 3 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/problematic/grcExclusions.bb\ longLabel GRC Exclusion list: contaminations or false duplications\ parent problematic\ priority 3\ shortLabel GRC Exclusions\ track grcExclusions\ type bigBed 4\ visibility dense\ gtexImmuneAtlasFullDetails GTEx Immune Atlas bigBarChart GTEx single nuclei immune expression 3 3 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=tabula-sapiens+all&gene=$

    \ Description

    \

    \ This track collection shows data from \ Single-nucleus cross-tissue molecular reference maps toward\ understanding disease gene function. The dataset covers ~200,000 single nuclei\ from a total of 16 human donors across 25 samples, using 4 different sample preparation\ protocols followed by droplet based single-cell RNA-seq. The samples were obtained from\ frozen tissue as part of the Genotype-Tissue Expression (GTEx) project.\ Samples were taken from the esophagus, skeletal muscle, heart, lung, prostate, breast,\ and skin. The dataset includes 43 broad cell classes, some specific to certain tissues\ and some shared across all tissue types.\

    \ \

    \ This track collection contains three bar chart tracks of RNA expression. The first track,\ Cross Tissue Nuclei, allows\ cells to be grouped together and faceted on up to 4 categories: tissue, cell class, cell subclass,\ and cell type. The second track,\ Cross Tissue Details, allows\ cells to be grouped together and faceted on up to 7 categories: tissue, cell class, cell subclass,\ cell type, granular cell type, sex, and donor. The third track,\ GTEx Immune Atlas,\ allows cells to be grouped together and faceted on up to 5 categories: tissue, cell type, cell\ class, sex, and donor.\

    \ \

    \ Please see the\ GTEx portal\ for further interactive displays and additional data.

    \ \

    Display Conventions and Configuration

    \

    \ Tissue-cell type combinations in the Full and Combined tracks are\ colored by which cell type they belong to in the below table:\

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell Type
    Endothelial
    Epithelial
    Glia
    Immune
    Neuron
    Stromal
    Other
    \

    \ \

    \ Tissue-cell type combinations in the Immune Atlas track are shaded according\ to the below table:\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell Type
    Inflammatory Macrophage
    Lung Macrophage
    Monocyte/Macrophage FCGR3A High
    Monocyte/Macrophage FCGR3A Low
    Macrophage HLAII High
    Macrophage LYVE1 High
    Proliferating Macrophage
    Dendritic Cell 1
    Dendritic Cell 2
    Mature Dendritic Cell
    Langerhans
    CD14+ Monocyte
    CD16+ Monocyte
    LAM-like
    Other
    \

    \ \

    Methods

    \

    \ Using the previously collected tissue samples from the Genotype-Tissue Expression\ project, nuclei were isolated using four different protocols and sequenced\ using droplet based single cell RNA-seq. CellBender v2.1 and other standard quality\ control techniques were applied, resulting in 209,126 nuclei profiles across eight\ tissues, with a mean of 918 genes and 1519 transcripts per profile.\

    \ \

    \ Data from all samples was integrated with a conditional variation autoencoder\ in order to correct for multiple sources of variation like sex, and protocol\ while preserving tissue and cell type specific effects.\

    \ \

    \ For detailed methods, please refer to Eraslan et al, or the\ \ GTEx portal website.\

    \ \

    UCSC Methods

    \

    \ The gene expression files were downloaded from the\ \ GTEx portal. The UCSC command line utilities matrixClusterColumns,\ matrixToBarChartBed, and bedToBigBed were used to transform\ these into a bar chart format bigBed file that can be visualized.\ The UCSC utilities can be found on\ our download server.\

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions or our Data Access FAQ for more\ information.

    \ \

    Credits

    \

    Thanks to the GTEx Consortium for creating and analyzing these data.

    \ \

    References

    \

    \ Eraslan G, Drokhlyansky E, Anand S, Fiskin E, Subramanian A, Slyper M, Wang J, Van Wittenberghe N,\ Rouhana JM, Waldman J et al.\ \ Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function.\ Science. 2022 May 13;376(6594):eabl4290.\ PMID: 35549429; PMC: PMC9383269\

    \ singleCell 1 barChartCategoryUrl /gbdb/hg38/bbi/gtexImmuneAtlas/facet_detailed.categories\ barChartFacets tissue,cell_type,cell_class,sex,donor\ barChartMerge on\ barChartMetric gene/genome\ barChartStatsUrl /gbdb/hg38/bbi/gtexImmuneAtlas/facet_detailed_class.facets\ barChartStretchToItem on\ barChartUnit parts per million\ bigDataUrl /gbdb/hg38/bbi/gtexImmuneAtlas/facet_detailed_class.bb\ defaultLabelFields name\ html crossTissueMaps\ labelFields name,name2\ longLabel GTEx single nuclei immune expression\ parent crossTissueMaps\ priority 3\ shortLabel GTEx Immune Atlas\ track gtexImmuneAtlasFullDetails\ type bigBarChart\ url https://cells.ucsc.edu/?ds=tabula-sapiens+all&gene=$\ urlLabel View on the UCSC Cell Browser: $\ visibility pack\ wgEncodeRegTxnCaltechRnaSeqHelas3R2x75Il200SigPooled HeLa-S3 bigWig 0 65535 Transcription of HeLa-S3 cells from ENCODE 0 3 227 255 128 241 255 191 0 0 0 regulation 1 color 227,255,128\ longLabel Transcription of HeLa-S3 cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegTxn\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 3\ shortLabel HeLa-S3\ track wgEncodeRegTxnCaltechRnaSeqHelas3R2x75Il200SigPooled\ type bigWig 0 65535\ hffc6Insitu HFFc6 In situ hic In situ Hi-C Chromatin Structure on HFFc6 0 3 0 0 0 127 127 127 0 0 0 regulation 1 bigDataUrl /gbdb/hg38/bbi/hic/4DNFIFLJLIS5.hic\ longLabel In situ Hi-C Chromatin Structure on HFFc6\ parent hicAndMicroC off\ shortLabel HFFc6 In situ\ track hffc6Insitu\ type hic\ chainHprcGCA_018466985v1 HG02559.mat chain GCA_018466985.1 HG02559.mat HG02559.pri.mat.f1_v2 (May 2021 GCA_018466985.1_HG02559.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 3 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02559.mat HG02559.pri.mat.f1_v2 (May 2021 GCA_018466985.1_HG02559.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018466985.1\ parent hprcChainNetViewchain off\ priority 20\ shortLabel HG02559.mat\ subGroups view=chain sample=s020 population=afr subpop=acb hap=mat\ track chainHprcGCA_018466985v1\ type chain GCA_018466985.1\ wgEncodeRegMarkH3k4me1Hsmm HSMM bigWig 0 6265 H3K4Me1 Mark (Often Found Near Regulatory Elements) on HSMM Cells from ENCODE 0 3 120 235 204 187 245 229 0 0 0 regulation 1 color 120,235,204\ longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on HSMM Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k4me1\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel HSMM\ table wgEncodeBroadHistoneHsmmH3k4me1StdSig\ track wgEncodeRegMarkH3k4me1Hsmm\ type bigWig 0 6265\ wgEncodeRegMarkH3k4me3Hsmm HSMM bigWig 0 25995 H3K4Me3 Mark (Often Found Near Promoters) on HSMM Cells from ENCODE 0 3 120 235 204 187 245 229 0 0 0 regulation 1 color 120,235,204\ longLabel H3K4Me3 Mark (Often Found Near Promoters) on HSMM Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k4me3\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel HSMM\ table wgEncodeBroadHistoneHsmmH3k4me3StdSig\ track wgEncodeRegMarkH3k4me3Hsmm\ type bigWig 0 25995\ wgEncodeRegMarkH3k27acHsmm HSMM bigWig 0 5448 H3K27Ac Mark (Often Found Near Regulatory Elements) on HSMM Cells from ENCODE 2 3 120 235 204 187 245 229 0 0 0 regulation 1 color 120,235,204\ longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on HSMM Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k27ac\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel HSMM\ table wgEncodeBroadHistoneHsmmH3k27acStdSig\ track wgEncodeRegMarkH3k27acHsmm\ type bigWig 0 5448\ xGen_Research_Probes_V2 IDT xGen V2 P bigBed IDT - xGen Exome Research Panel V2 Probes 1 3 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/xgen-exome-research-panel-v2-probes-hg38.bb\ color 100,143,255\ longLabel IDT - xGen Exome Research Panel V2 Probes\ parent exomeProbesets on\ shortLabel IDT xGen V2 P\ track xGen_Research_Probes_V2\ type bigBed\ visibility dense\ jaspar2020 JASPAR 2020 TFBS bigBed 6 + JASPAR CORE 2020 - Predicted Transcription Factor Binding Sites 0 3 0 0 0 127 127 127 1 0 0 http://jaspar.genereg.net/search?q=$$&collection=all&tax_group=all&tax_id=all&type=all&class=all&family=all&version=all regulation 1 bigDataUrl /gbdb/hg38/jaspar/JASPAR2020.bb\ filterValues.name Ahr::Arnt,Alx1,ALX3,Alx4,Ar,ARGFX,Arid3a,Arid3b,Arid5a,Arnt,ARNT2,ARNT::HIF1A,Arntl,Arx,ASCL1,ASCL1(var.2),Ascl2,Atf1,ATF2,ATF3,ATF4,ATF6,ATF7,Atoh1,ATOH1(var.2),ATOH7,BACH1,Bach1::Mafk,BACH2,BACH2(var.2),BARHL1,BARHL2,BARX1,BARX2,BATF,BATF3,BATF::JUN,BCL6,BCL6B,Bhlha15,BHLHA15(var.2),BHLHE22,BHLHE22(var.2),BHLHE23,BHLHE40,BHLHE41,BSX,CDX1,CDX2,CDX4,CEBPA,CEBPB,CEBPD,CEBPE,CEBPG,CEBPG(var.2),CENPB,CLOCK,CREB1,CREB3,CREB3L1,Creb3l2,CREB3L4,CREB3L4(var.2),Creb5,CREM,Crx,CTCF,CTCFL,CUX1,CUX2,DBP,Ddit3::Cebpa,Dlx1,Dlx2,Dlx3,Dlx4,DLX5,DLX6,Dmbx1,Dmrt1,DMRT3,DMRTA2,DMRTC2,DPRX,DRGX,Dux,DUX4,DUXA,E2F1,E2F2,E2F3,E2F4,E2F6,E2F7,E2F8,EBF1,Ebf2,EBF3,EGR1,EGR2,EGR3,EGR4,EHF,ELF1,ELF2,ELF3,ELF4,ELF5,ELK1,ELK3,ELK4,EMX1,EMX2,EN1,EN2,EOMES,ERF,ERG,ESR1,ESR2,ESRRA,ESRRB,Esrrg,ESX1,ETS1,ETS2,ETV1,ETV2,ETV3,ETV4,ETV5,ETV6,EVX1,EVX2,EWSR1-FLI1,FERD3L,FEV,FIGLA,FLI1,FOS,FOSB::JUN,FOSB::JUNB,FOSB::JUNB(var.2),FOS::JUN,FOS::JUNB,FOS::JUND,FOS::JUN(var.2),FOSL1,FOSL1::JUN,FOSL1::JUNB,FOSL1::JUND,FOSL1::JUND(var.2),FOSL1::JUN(var.2),FOSL2,FOSL2::JUN,FOSL2::JUNB,FOSL2::JUNB(var.2),FOSL2::JUND,FOSL2::JUND(var.2),FOSL2::JUN(var.2),FOXA1,FOXA2,FOXA3,FOXB1,FOXC1,FOXC2,FOXD1,FOXD2,Foxd3,FOXE1,Foxf1,FOXF2,FOXG1,FOXH1,FOXI1,Foxj2,Foxj3,FOXK1,FOXK2,FOXL1,Foxl2,FOXN3,Foxo1,FOXO3,FOXO4,FOXO6,FOXP1,FOXP2,FOXP3,Foxq1,GABPA,GATA1,GATA1::TAL1,GATA2,GATA3,GATA4,GATA5,GATA6,GBX1,GBX2,GCM1,GCM2,GFI1,Gfi1b,GLI2,GLI3,GLIS1,GLIS2,GLIS3,Gmeb1,GMEB2,GRHL1,GRHL2,GSC,GSC2,GSX1,GSX2,Hand1::Tcf3,HAND2,HES1,HES2,HES5,HES6,HES7,HESX1,HEY1,HEY2,Hic1,HIC2,HIF1A,HINFP,HLF,HLTF,HMBOX1,Hmx1,Hmx2,Hmx3,HNF1A,HNF1B,HNF4A,HNF4A(var.2),HNF4G,HOXA1,HOXA10,Hoxa11,HOXA13,HOXA2,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,HOXB13,HOXB2,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC8,HOXC9,HOXD10,HOXD11,HOXD12,HOXD13,HOXD3,HOXD4,HOXD8,HOXD9,HSF1,HSF2,HSF4,IKZF1,INSM1,IRF1,IRF2,IRF3,IRF4,IRF5,IRF6,IRF7,IRF8,IRF9,Isl1,ISL2,ISX,JDP2,JDP2(var.2),JUN,JUNB,JUNB(var.2),JUND,JUND(var.2),JUN::JUNB,JUN::JUNB(var.2),JUN(var.2),Klf1,KLF10,KLF11,Klf12,KLF13,KLF14,KLF15,KLF16,KLF17,KLF2,KLF3,KLF4,KLF5,KLF6,KLF9,LBX1,LBX2,LEF1,LHX1,LHX2,Lhx3,Lhx4,LHX5,LHX6,Lhx8,LHX9,LIN54,LMX1A,LMX1B,MAF,MAFA,Mafb,MAFF,MAFG,MAFK,MAF::NFE2,MAX,MAX::MYC,MAZ,Mecom,MEF2A,MEF2B,MEF2C,MEF2D,MEIS1,MEIS1(var.2),MEIS2,MEIS2(var.2),MEIS3,MEOX1,MEOX2,MGA,MITF,mix-a,MIXL1,MLX,Mlxip,MLXIPL,MNT,MNX1,MSANTD3,MSC,MSGN1,MSX1,MSX2,Msx3,MTF1,MXI1,MYB,MYBL1,MYBL2,MYC,MYCN,MYF5,MYF6,MYOD1,MYOG,MZF1,MZF1(var.2),NEUROD1,NEUROD2,NEUROG1,NEUROG2,NEUROG2(var.2),NFAT5,NFATC1,NFATC2,NFATC3,NFATC4,NFE2,NFE2L1,Nfe2l2,NFIA,NFIB,NFIC,NFIC::TLX1,NFIC(var.2),NFIL3,NFIX,NFIX(var.2),NFKB1,NFKB2,NFYA,NFYB,NFYC,NHLH1,NHLH2,NKX2-2,NKX2-3,NKX2-5,Nkx2-5(var.2),NKX2-8,Nkx3-1,Nkx3-2,NKX6-1,NKX6-2,NKX6-3,Nobox,NOTO,Npas2,NR1D1,NR1D2,NR1H2::RXRA,Nr1h3::Rxra,NR1H4,NR1H4::RXRA,NR1I2,NR1I3,NR2C1,NR2C2,NR2C2(var.2),Nr2e1,Nr2e3,NR2F1,NR2F1(var.2),NR2F1(var.3),NR2F2,Nr2f6,Nr2f6(var.2),NR2F6(var.3),NR3C1,NR3C2,NR4A1,NR4A2,NR4A2::RXRA,NR5A1,Nr5a2,NR6A1,NRF1,NRL,OLIG1,OLIG2,OLIG3,ONECUT1,ONECUT2,ONECUT3,OSR1,OSR2,OTX1,OTX2,OVOL1,OVOL2,PAX1,Pax2,PAX3,PAX3(var.2),PAX4,PAX5,PAX6,PAX7,PAX9,PBX1,PBX2,PBX3,PDX1,PHOX2A,PHOX2B,PITX1,PITX2,PITX3,PKNOX1,PKNOX2,PLAG1,Plagl1,PLAGL2,POU1F1,POU2F1,POU2F2,POU2F3,POU3F1,POU3F2,POU3F3,POU3F4,POU4F1,POU4F2,POU4F3,POU5F1,POU5F1B,Pou5f1::Sox2,POU6F1,POU6F1(var.2),POU6F2,PPARA::RXRA,PPARD,PPARG,Pparg::Rxra,PRDM1,Prdm15,PRDM4,PROP1,PROX1,PRRX1,PRRX2,Ptf1a,Ptf1a(var.2),Ptf1a(var.3),RARA,RARA::RXRA,RARA::RXRG,RARA(var.2),Rarb,Rarb(var.2),RARB(var.3),Rarg,Rarg(var.2),RARG(var.3),RAX,RAX2,RBPJ,Rbpjl,REL,RELA,RELB,REST,RFX1,RFX2,RFX3,RFX4,RFX5,RFX7,Rhox11,RHOXF1,RORA,RORA(var.2),RORB,RORC,RREB1,RUNX1,RUNX2,RUNX3,Rxra,RXRA::VDR,RXRB,RXRB(var.2),RXRG,RXRG(var.2),SCRT1,SCRT2,SHOX,Shox2,SIX1,SIX2,Six3,Smad2::Smad3,SMAD2::SMAD3::SMAD4,SMAD3,Smad4,SMAD5,SNAI1,SNAI2,SNAI3,SOHLH2,Sox1,SOX10,Sox11,SOX12,SOX13,SOX14,SOX15,Sox17,SOX18,SOX2,SOX21,Sox3,SOX4,Sox5,Sox6,SOX8,SOX9,SP1,SP2,SP3,SP4,SP8,SP9,SPDEF,SPI1,SPIB,SPIC,Spz1,SREBF1,SREBF1(var.2),SREBF2,SREBF2(var.2),SRF,SRY,STAT1,STAT1::STAT2,Stat2,STAT3,Stat4,Stat5a,Stat5a::Stat5b,Stat5b,Stat6,TAL1::TCF3,TBP,TBR1,TBX1,TBX15,TBX18,TBX19,TBX2,TBX20,TBX21,TBX3,TBX4,TBX5,TBX6,TBXT,Tcf12,TCF12(var.2),Tcf21,TCF21(var.2),TCF3,TCF4,TCF7,TCF7L1,TCF7L2,TCFL5,TEAD1,TEAD2,TEAD3,TEAD4,TEF,TFAP2A,TFAP2A(var.2),TFAP2A(var.3),TFAP2B,TFAP2B(var.2),TFAP2B(var.3),TFAP2C,TFAP2C(var.2),TFAP2C(var.3),TFAP2E,TFAP4,TFAP4(var.2),TFCP2,TFDP1,TFE3,TFEB,TFEC,TGIF1,TGIF2,TGIF2LX,TGIF2LY,THAP1,THAP11,THRB,THRB(var.2),THRB(var.3),TLX2,TP53,TP63,TP73,TWIST1,Twist2,UNCX,USF1,USF2,VAX1,VAX2,VDR,VENTX,VEZF1,VSX1,VSX2,Wt1,XBP1,YY1,YY2,ZBED1,ZBTB12,ZBTB14,ZBTB18,ZBTB26,ZBTB32,ZBTB33,ZBTB6,ZBTB7A,ZBTB7B,ZBTB7C,ZEB1,ZFP42,ZFP57,Zfx,ZIC1,Zic1::Zic2,Zic2,ZIC3,ZIC4,ZIC5,ZKSCAN1,ZKSCAN5,ZNF135,ZNF136,ZNF140,ZNF143,ZNF148,ZNF16,ZNF24,ZNF263,ZNF274,Znf281,ZNF282,ZNF317,ZNF341,ZNF354C,ZNF382,ZNF384,ZNF410,Znf423,ZNF449,ZNF460,ZNF528,ZNF652,ZNF682,ZNF684,ZNF740,ZNF75D,ZSCAN29,ZSCAN4\ longLabel JASPAR CORE 2020 - Predicted Transcription Factor Binding Sites\ motifPwmTable hgFixed.jasparVertebrates2020\ parent jaspar off\ priority 3\ shortLabel JASPAR 2020 TFBS\ track jaspar2020\ type bigBed 6 +\ visibility hide\ wgEncodeRegDnaseUwLncapPeak LNCaP Pk narrowPeak LNCaP prostate adenocarcinoma cell line DNaseI Peaks from ENCODE 1 3 255 102 85 255 178 170 1 0 0 regulation 1 color 255,102,85\ longLabel LNCaP prostate adenocarcinoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel LNCaP Pk\ subGroups view=a_Peaks cellType=LNCaP treatment=n_a tissue=prostate cancer=cancer\ track wgEncodeRegDnaseUwLncapPeak\ wgEncodeRegDnaseUwLncapWig LNCaP Sg bigWig 0 37372.7 LNCaP prostate adenocarcinoma cell line DNaseI Signal from ENCODE 0 3 255 102 85 255 178 170 0 0 0 regulation 1 color 255,102,85\ longLabel LNCaP prostate adenocarcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.01793\ shortLabel LNCaP Sg\ subGroups cellType=LNCaP treatment=n_a tissue=prostate cancer=cancer\ table wgEncodeRegDnaseUwLncapSignal\ track wgEncodeRegDnaseUwLncapWig\ type bigWig 0 37372.7\ tgpNA19685_m011_MXL m011 MXL Trio vcfPhasedTrio 1000 Genomes m011 Mexican Ancestry from Los Angeles Trio 2 3 0 0 0 127 127 127 0 0 23 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX, varRep 0 longLabel 1000 Genomes m011 Mexican Ancestry from Los Angeles Trio\ parent tgpTrios\ shortLabel m011 MXL Trio\ track tgpNA19685_m011_MXL\ type vcfPhasedTrio\ vcfChildSample NA19685|child\ vcfParentSamples NA19660|mother,NA19661|father\ visibility full\ microsat Microsatellite bed 4 Microsatellites - Di-nucleotide and Tri-nucleotide Repeats 0 3 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track displays regions that are likely to be useful as microsatellite\ markers. These are sequences of at least 15 perfect di-nucleotide and \ tri-nucleotide repeats and tend to be highly polymorphic in the\ population.\

    \ \

    Methods

    \

    \ The data shown in this track are a subset of the Simple Repeats track, \ selecting only those \ repeats of period 2 and 3, with 100% identity and no indels and with\ at least 15 copies of the repeat. The Simple Repeats track is\ created using the \ Tandem Repeats Finder. For more information about this \ program, see Benson (1999).

    \ \

    Credits

    \

    \ Tandem Repeats Finder was written by \ Gary Benson.

    \ \

    References

    \ \

    \ Benson G.\ \ Tandem repeats finder: a program to analyze DNA sequences.\ Nucleic Acids Res. 1999 Jan 15;27(2):573-80.\ PMID: 9862982; PMC: PMC148217\

    \ rep 1 group rep\ longLabel Microsatellites - Di-nucleotide and Tri-nucleotide Repeats\ priority 3\ shortLabel Microsatellite\ track microsat\ type bed 4\ visibility hide\ dbSnp155Mult Mult. dbSNP(155) bigDbSnp Short Genetic Variants from dbSNP Release 155 that Map to Multiple Genomic Loci 1 3 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg38/snp/dbSnp155Mult.bb\ defaultGeneTracks knownGene\ longLabel Short Genetic Variants from dbSNP Release 155 that Map to Multiple Genomic Loci\ parent dbSnp155ViewVariants off\ priority 3\ shortLabel Mult. dbSNP(155)\ subGroups view=variants\ track dbSnp155Mult\ cons30wayViewalign Multiz Alignments bed 4 Mammals Multiz Alignment & Conservation (27 primates) 3 3 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Mammals Multiz Alignment & Conservation (27 primates)\ parent cons30way\ shortLabel Multiz Alignments\ track cons30wayViewalign\ view align\ viewUi on\ visibility pack\ revelG Mutation: G bigWig REVEL: Mutation is G 1 3 150 80 200 202 167 227 0 0 0 phenDis 0 bigDataUrl /gbdb/hg38/revel/g.bw\ longLabel REVEL: Mutation is G\ maxHeightPixels 128:20:8\ maxWindowToDraw 10000000\ maxWindowToQuery 500000\ mouseOverFunction noAverage\ parent revel on\ shortLabel Mutation: G\ track revelG\ type bigWig\ viewLimits 0:1.0\ viewLimitsMax 0:1.0\ visibility dense\ caddG Mutation: G bigWig CADD 1.6 Score: Mutation is G 1 3 100 130 160 177 192 207 0 0 0 phenDis 0 bigDataUrl /gbdb/hg38/cadd/g.bw\ longLabel CADD 1.6 Score: Mutation is G\ maxHeightPixels 128:20:8\ parent cadd on\ shortLabel Mutation: G\ track caddG\ type bigWig\ viewLimits 10:50\ viewLimitsMax 0:100\ visibility dense\ platinumNA12878 NA12878 vcfTabix Platinum genome variant NA12878 3 3 0 0 0 127 127 127 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 1 bigDataUrl /gbdb/hg38/platinumGenomes/NA12878.vcf.gz\ chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX\ configureByPopup off\ group varRep\ longLabel Platinum genome variant NA12878\ maxWindowToDraw 200000\ parent platinumGenomes\ shortLabel NA12878\ showHardyWeinberg on\ track platinumNA12878\ type vcfTabix\ vcfDoFilter off\ vcfDoMaf off\ visibility pack\ panelAppTandRep PanelApp STRs bigBed 9 + Genomics England PanelApp Short Tandem Repeats 3 3 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg38/panelApp/tandRep.bb\ filterValues.confidenceLevel 3,2,1,0\ itemRgb on\ labelFields hgncSymbol\ longLabel Genomics England PanelApp Short Tandem Repeats\ mouseOverField mouseOverField\ parent panelApp on\ shortLabel PanelApp STRs\ skipEmptyFields on\ skipFields chrom,chromStart,blockStarts,blockSizes,mouseOverField\ track panelAppTandRep\ type bigBed 9 +\ urls omimGene="https://www.omim.org/entry/$$" ensemblID="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" geneSymbol="https://panelapp.genomicsengland.co.uk/panels/entities/$$"\ visibility pack\ wgEncodeGencodePseudoGeneV20 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 20 (Ensembl 76) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 20 (Ensembl 76)\ parent wgEncodeGencodeV20ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV20\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV22 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 22 (Ensembl 79) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 22 (Ensembl 79)\ parent wgEncodeGencodeV22ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV22\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV23 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 23 (Ensembl 81) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 23 (Ensembl 81)\ parent wgEncodeGencodeV23ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV23\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV24 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 24 (Ensembl 83) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 24 (Ensembl 83)\ parent wgEncodeGencodeV24ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV24\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV25 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 25 (Ensembl 85) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 25 (Ensembl 85)\ parent wgEncodeGencodeV25ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV25\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV26 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 26 (Ensembl 88) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 26 (Ensembl 88)\ parent wgEncodeGencodeV26ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV26\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV27 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 27 (Ensembl 90) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 27 (Ensembl 90)\ parent wgEncodeGencodeV27ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV27\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV28 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 28 (Ensembl 92) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 28 (Ensembl 92)\ parent wgEncodeGencodeV28ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV28\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV29 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 29 (Ensembl 94) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 29 (Ensembl 94)\ parent wgEncodeGencodeV29ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV29\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV30 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 30 (Ensembl 96) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 30 (Ensembl 96)\ parent wgEncodeGencodeV30ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV30\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV31 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 31 (Ensembl 97) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 31 (Ensembl 97)\ parent wgEncodeGencodeV31ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV31\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV32 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 32 (Ensembl 98) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 32 (Ensembl 98)\ parent wgEncodeGencodeV32ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV32\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV33 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 33 (Ensembl 99) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 33 (Ensembl 99)\ parent wgEncodeGencodeV33ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV33\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV34 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 34 (Ensembl 100) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 34 (Ensembl 100)\ parent wgEncodeGencodeV34ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV34\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV35 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 35 (Ensembl 101) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 35 (Ensembl 101)\ parent wgEncodeGencodeV35ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV35\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV36 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 36 (Ensembl 102) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 36 (Ensembl 102)\ parent wgEncodeGencodeV36ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV36\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV37 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 37 (Ensembl 103) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 37 (Ensembl 103)\ parent wgEncodeGencodeV37ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV38 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 38 (Ensembl 104) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 38 (Ensembl 104)\ parent wgEncodeGencodeV38ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV38\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV39 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 39 (Ensembl 105) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 39 (Ensembl 105)\ parent wgEncodeGencodeV39ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV39\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV40 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 40 (Ensembl 106) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 40 (Ensembl 106)\ parent wgEncodeGencodeV40ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV40\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV41 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 41 (Ensembl 107) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 41 (Ensembl 107)\ parent wgEncodeGencodeV41ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV41\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV42 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 42 (Ensembl 108) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 42 (Ensembl 108)\ parent wgEncodeGencodeV42ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV42\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV43 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 43 (Ensembl 109) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 43 (Ensembl 109)\ parent wgEncodeGencodeV43ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV43\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV44 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 44 (Ensembl 110) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 44 (Ensembl 110)\ parent wgEncodeGencodeV44ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV44\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV45 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 45 (Ensembl 111) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 45 (Ensembl 111)\ parent wgEncodeGencodeV45ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV45\ trackHandler wgEncodeGencode\ type genePred\ recombMat Recomb. deCODE Mat bigWig Recombination rate: deCODE Genetics, maternal 2 3 0 130 0 127 192 127 0 0 0

    Description

    \

    \ The recombination rate track represents calculated rates of recombination based\ on the genetic maps from deCODE (Halldorsson et al., 2019) and 1000 Genomes\ (2013 Phase 3 release, lifted from hg19). The deCODE map is more recent, has a higher \ resolution and was natively created on hg38 and therefore recommended. \ For the Recomb. deCODE average track, the recombination rates for chrX represent the female rate.\

    \ \

    This track also includes a subtrack with all the\ individual deCODE recombination events and another subtrack with several thousand\ de-novo mutations found in the deCODE sequencing data. These two tracks are hidden by\ default and have to be switched on explicitly on the configuration page.\

    \ \

    Display Conventions and Configuration

    \

    \ This is a super track that contains different subtracks, three with the deCODE\ recombination rates (paternal, maternal and average) and one with the 1000\ Genomes recombination rate (average). These tracks are in \ signal graph\ (wiggle) format. By default, to show most recombination hotspots, their maximum\ value is set to 100 cM, even though many regions have values higher than 100.\ The maximum value can be changed on the configuration pages of the tracks.\

    \ \

    \ There are two more tracks that show additional details provided by deCODE: one\ subtrack with the raw data of all cross-overs tagged with their proband ID and\ another one with around 8000 human de-novo mutation variants that are linked to\ cross-over changes.\

    \ \

    Methods

    \

    \ The deCODE genetic map was created at \ deCODE Genetics. It is based \ on microarrays assaying 626,828 SNP markers that allowed to identify 1,476,140 crossovers in\ 56,321 paternal meioses and 3,055,395 crossovers in 70,086 maternal meioses.\ In total, the data is based on 4,531,535 crossovers in 126,427 meioses. By\ using WGS data with 9,305,070 SNPs, the boundaries for 761,981 crossovers were\ refined: 247,942 crossovers in 9423 paternal meioses and 514,039 crossovers in\ 11,750 maternal meioses. The average resolution of the genetic map is 682 base\ pairs (bp): 655 and 708 bp for the paternal and maternal maps, respectively.\

    \ \

    The 1000 Genomes genetic map is based on the IMPUTE genetic map based on 1000 Genomes Phase 3, on hg19 coordinates. It\ was converted to hg38 by Po-Ru Loh at the Broad Institute. After a run of \ liftOver, he post-processed the data to deal with situations in which\ consecutive map locations became much closer/farther after lifting. The\ heuristic used is sufficient for statistical phasing but may not be optimal for\ other analyses. For this reason, and because of its higher resolution, the DeCODE\ map is therefore recommended for hg38.\

    \ \

    As with all other tracks, the data conversion commands and pointers to the\ original data files are documented in the \ makeDoc file of this track.

    \ \

    Data Access

    \

    \ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\

    \ \

    \ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

    \ bigWigToBedGraph -chrom=chr17 -start=45941345 -end=45942345 http://hgdownload.soe.ucsc.edu/gbdb/hg38/recombRate/recombAvg.bw stdout\
    \

    \ \

    \ Please refer to our\ Data Access FAQ\ for more information.\

    \ \

    Credits

    \

    \ This track was produced at UCSC using data that are freely available for\ the deCODE\ and 1000 Genomes genetic maps. Thanks to Po-Ru Loh at the\ Broad Institute for providing the code to lift the hg19 1000 Genomes map data to hg38.\

    \ \

    References

    \

    \ 1000 Genomes Project Consortium., Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA,\ Hurles ME, McVean GA.\ \ A map of human genome variation from population-scale sequencing.\ Nature. 2010 Oct 28;467(7319):1061-73.\ PMID: 20981092; PMC: PMC3042601\

    \ \

    \ Halldorsson BV, Palsson G, Stefansson OA, Jonsson H, Hardarson MT, Eggertsson HP, Gunnarsson B,\ Oddsson A, Halldorsson GH, Zink F et al.\ \ Characterizing mutagenic effects of recombination through a sequence-level genetic map.\ Science. 2019 Jan 25;363(6425).\ PMID: 30679340\

    \ map 0 bigDataUrl /gbdb/hg38/recombRate/recombMat.bw\ html recombRate2.html\ longLabel Recombination rate: deCODE Genetics, maternal\ maxHeightPixels 128:60:8\ parent recombRate2\ priority 3\ shortLabel Recomb. deCODE Mat\ track recombMat\ type bigWig\ viewLimits 0.0:100\ viewLimitsMax 0:150000\ visibility full\ ncbiRefSeqPredicted RefSeq Predicted genePred NCBI RefSeq genes, predicted subset (XM_* or XR_*) 1 3 12 12 120 133 133 187 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 12,12,120\ idXref ncbiRefSeqLink mrnaAcc name\ longLabel NCBI RefSeq genes, predicted subset (XM_* or XR_*)\ parent refSeqComposite off\ priority 3\ shortLabel RefSeq Predicted\ track ncbiRefSeqPredicted\ chainHg19ReMapAxtChain ReMap + axtChain hg19 chain hg19 NCBI ReMap alignments to hg19/GRCh37, joined by axtChain 0 3 0 0 0 127 127 127 0 0 0 map 1 chainLinearGap medium\ chainMinScore 3000\ longLabel NCBI ReMap alignments to hg19/GRCh37, joined by axtChain\ matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91\ matrixHeader A, C, G, T\ otherDb hg19\ parent liftHg19\ priority 3\ shortLabel ReMap + axtChain hg19\ track chainHg19ReMapAxtChain\ type chain hg19\ unipLocSignal Signal Peptide bigBed 12 + UniProt Signal Peptides 1 3 255 0 150 255 127 202 0 0 0 genes 1 bigDataUrl /gbdb/hg38/uniprot/unipLocSignal.bb\ color 255,0,150\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ itemRgb off\ longLabel UniProt Signal Peptides\ parent uniprot\ priority 3\ shortLabel Signal Peptide\ track unipLocSignal\ type bigBed 12 +\ visibility dense\ giabSv Structural Variants bigBed 9 + Genome in a Bottle Structural Variants (dbVar nstd175) 3 3 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/#VariantDetails varRep 1 bigDataUrl /gbdb/hg38/giab/structuralVariants/giabSv.bb\ itemRgb on\ longLabel Genome in a Bottle Structural Variants (dbVar nstd175)\ mouseOverField _mouseOver\ parent svView\ shortLabel Structural Variants\ subGroups view=sv\ track giabSv\ type bigBed 9 +\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/#VariantDetails\ urlLabel dbVar Variant Details:\ urls dbVarUrl="$$"\ covidHgiGwasR4PvalC1 Tested COVID vars bigLolly 9 + Tested COVID risk variants from the COVID-19 HGI GWAS Analyis C1 (11085 cases, 20 studies, Rel 4: Oct 2020) 0 3 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22, varRep 1 bigDataUrl /gbdb/hg38/covidHgiGwas/covidHgiGwasR4.C1.hg38.bb\ longLabel Tested COVID risk variants from the COVID-19 HGI GWAS Analyis C1 (11085 cases, 20 studies, Rel 4: Oct 2020)\ parent covidHgiGwasR4Pval on\ priority 3\ shortLabel Tested COVID vars\ track covidHgiGwasR4PvalC1\ TSS_activity_TPM TSS activity (TPM) bigWig FANTOM5: TSS activity per sample (TPM) 1 3 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\

    \ \

    Display Conventions and Configuration

    \ \

    Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

    \ \

    Methods

    \

    Protocol

    \

    Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE (Kanamori-Katyama\ et al. 2011).\

      \
    • hCAGE
      • \
    • LQhCAGE
      • \
    \

    \

    Samples

    \

    Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\

      \
    • Primary cell
      • \
    • Tissue
      • \
    • Cell Line
      • \
    • Time course
      • \
    • Fractionation
      • \
    \

    \

    TSS peaks

    \

    TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as a\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They are\ named "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or "p@CHROM:START..END,STRAND"\ otherwise. The summary tracks consist of the TSS (CAGE) peaks and summary profiles of TSS\ activities (total and maximum values). The summary track consists of the following tracks.\

      \
    • TSS (CAGE) peaks\
        \
      • the robust peaks
        • \
      \
      • \
    • TSS summary profiles\
        \
      • Total counts and TPM (tags per million) in all the samples
        • \
      • Maximum counts and TPM among the samples
        • \
      \
      • \
    \ \

    TSS activity

    \

    \ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as TPM (tags per million).\

    \ \
    \
    Categories of individual samples
    \
    - Cell Line hCAGE
    \
    - Cell Line LQhCAGE
    \
    - fractionation hCAGE
    \
    - Primary cell hCAGE
    \
    - Primary cell LQhCAGE
    \
    - Time course hCAGE
    \
    - Tissue hCAGE
    \
    \ \

    Data Access

    \

    \ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

    \ \

    \ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.

    \ \

    Credits

    \ \

    \ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, the Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.

    \ \

    References

    \

    \ FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\ Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\ \ A promoter-level mammalian expression atlas.\ Nature. 2014 Mar 27;507(7493):462-70.\ PMID: 24670764; PMC: PMC4529748\

    \ \

    \ Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\ N, Daub CO et al.\ \ Unamplified cap analysis of gene expression on a single-molecule sequencer.\ Genome Res. 2011 Jul;21(7):1150-9.\ PMID: 21596820; PMC: PMC3129257\

    \ \

    \ Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\ Ishikawa-Kato S et al.\ \ Gateways to the FANTOM5 promoter level mammalian expression atlas.\ Genome Biol. 2015 Jan 5;16(1):22.\ PMID: 25723102; PMC: PMC4310165\

    \ regulation 0 boxedCfg on\ compositeTrack on\ dataVersion FANTOM5 reprocessed7\ dimensions dimX=sequenceTech dimY=category dimA=strand\ html fantom5.html\ longLabel FANTOM5: TSS activity per sample (TPM)\ priority 3\ shortLabel TSS activity (TPM)\ showSubtrackColorOnUi off\ sortOrder category=+ sequenceTech=+\ subGroup1 sequenceTech Sequence_Tech hCAGE=hCAGE LQhCAGE=LQhCAGE\ subGroup2 category Category cellLine=cellLine fractionation=fractionation primaryCell=primaryCell tissue=tissue AoSMC_response_to_FGF2=AoSMC_response_to_FGF2_timecourse AoSMC_response_to_IL1b=AoSMC_response_to_IL1b_timecourse ES_to_cardiomyocyte=ES_to_cardiomyocyte_timecourse Embryoid_body_to_melanocyte=Embryoid_body_to_melanocyte_timecourse Epithelial_to_mesenchymal=Epithelial_to_mesenchymal_timecourse Human_iPS_to_neuron_Downs_syndrome_1=Human_iPS_to_neuron_Downs_syndrome_1_timecourse Human_iPS_to_neuron_Downs_syndrome_2=Human_iPS_to_neuron_Downs_syndrome_2_timecourse Human_iPS_to_neuron_wt_1=Human_iPS_to_neuron_wt_1_timecourse Human_iPS_to_neuron_wt_2=Human_iPS_to_neuron_wt_2_timecourse Lymphatic_EC_response_to_VEGFC=Lymphatic_EC_response_to_VEGFC_timecourse MCF7_response_to_EGF=MCF7_response_to_EGF_timecourse MCF7_response_to_HRG=MCF7_response_to_HRG_timecourse MSC_to_adipocyte_human=MSC_to_adipocyte_human_timecourse Macrophage_influenza_infection=Macrophage_influenza_infection_timecourse Macrophage_response_to_LPS=Macrophage_response_to_LPS_timecourse Myoblast_to_myotube_wt_and_DMD=Myoblast_to_myotube_wt_and_DMD_timecourse Preadipocyte_to_adipocyte=Preadipocyte_to_adipocyte_timecourse Rinderpest_infection_series=Rinderpest_infection_series_timecourse Saos_calcification=Saos_calcification_timecourse timecourse=other_samples_in_timecourse\ subGroup3 strand Strand forward=forward reverse=reverse\ superTrack fantom5\ track TSS_activity_TPM\ type bigWig\ visibility dense\ umap50 Umap S50 bigBed 6 Single-read mappability with 50-mers 0 3 80 120 240 167 187 247 0 0 0 map 1 bigDataUrl /gbdb/hg38/hoffmanMappability/k50.Unique.Mappability.bb\ color 80,120,240\ longLabel Single-read mappability with 50-mers\ parent umapBigBed off\ priority 3\ shortLabel Umap S50\ subGroups view=SR\ track umap50\ visibility hide\ netMelGal5 Turkey Net netAlign melGal5 chainMelGal5 Turkey (Nov. 2014 (Turkey_5.0/melGal5)) Alignment Net 1 4 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Turkey (Nov. 2014 (Turkey_5.0/melGal5)) Alignment Net\ otherDb melGal5\ parent vertebrateChainNetViewnet off\ shortLabel Turkey Net\ subGroups view=net species=s006 clade=c01\ track netMelGal5\ type netAlign melGal5 chainMelGal5\ netPanPan3 Bonobo Net netAlign panPan3 chainPanPan3 Bonobo (May 2020 (Mhudiblu_PPA_v0/panPan3)) Alignment Net 1 4 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Bonobo (May 2020 (Mhudiblu_PPA_v0/panPan3)) Alignment Net\ otherDb panPan3\ parent primateChainNetViewnet off\ shortLabel Bonobo Net\ subGroups view=net species=s007b clade=c00\ track netPanPan3\ type netAlign panPan3 chainPanPan3\ netGalVar1 Malayan flying lemur Net netAlign galVar1 chainGalVar1 Malayan flying lemur (Jun. 2014 (G_variegatus-3.0.2/galVar1)) Alignment Net 1 4 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Malayan flying lemur (Jun. 2014 (G_variegatus-3.0.2/galVar1)) Alignment Net\ otherDb galVar1\ parent placentalChainNetViewnet off\ shortLabel Malayan flying lemur Net\ subGroups view=net species=s006 clade=c00\ track netGalVar1\ type netAlign galVar1 chainGalVar1\ wgEncodeGencode2wayConsPseudoV20 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 20 (Ensembl 76) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 20 (Ensembl 76)\ parent wgEncodeGencodeV20View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV20\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV22 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 22 (Ensembl 79) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 22 (Ensembl 79)\ parent wgEncodeGencodeV22View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV22\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV23 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 23 (Ensembl 81) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 23 (Ensembl 81)\ parent wgEncodeGencodeV23View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV23\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV24 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 24 (Ensembl 83) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 24 (Ensembl 83)\ parent wgEncodeGencodeV24View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV24\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV25 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 25 (Ensembl 85) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 25 (Ensembl 85)\ parent wgEncodeGencodeV25View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV25\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV26 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 26 (Ensembl 88) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 26 (Ensembl 88)\ parent wgEncodeGencodeV26View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV26\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV27 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 27 (Ensembl 90) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 27 (Ensembl 90)\ parent wgEncodeGencodeV27View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV27\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV28 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 28 (Ensembl 92) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 28 (Ensembl 92)\ parent wgEncodeGencodeV28View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV28\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV29 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 29 (Ensembl 94) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 29 (Ensembl 94)\ parent wgEncodeGencodeV29View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV29\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV30 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 30 (Ensembl 96) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 30 (Ensembl 96)\ parent wgEncodeGencodeV30View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV30\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV31 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 31 (Ensembl 97) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 31 (Ensembl 97)\ parent wgEncodeGencodeV31View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV31\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV32 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 32 (Ensembl 98) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 32 (Ensembl 98)\ parent wgEncodeGencodeV32View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV32\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV33 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 33 (Ensembl 99) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 33 (Ensembl 99)\ parent wgEncodeGencodeV33View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV33\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV34 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 34 (Ensembl 100) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 34 (Ensembl 100)\ parent wgEncodeGencodeV34View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV34\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV35 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 35 (Ensembl 101) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 35 (Ensembl 101)\ parent wgEncodeGencodeV35View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV35\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV36 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 36 (Ensembl 102) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 36 (Ensembl 102)\ parent wgEncodeGencodeV36View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV36\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV37 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 37 (Ensembl 103) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 37 (Ensembl 103)\ parent wgEncodeGencodeV37View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV38 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 38 (Ensembl 104) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 38 (Ensembl 104)\ parent wgEncodeGencodeV38View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV38\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV39 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 39 (Ensembl 105) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 39 (Ensembl 105)\ parent wgEncodeGencodeV39View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV39\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV40 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 40 (Ensembl 106) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 40 (Ensembl 106)\ parent wgEncodeGencodeV40View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV40\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV41 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 41 (Ensembl 107) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 41 (Ensembl 107)\ parent wgEncodeGencodeV41View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV41\ trackHandler wgEncodeGencode\ type genePred\ phyloP447wayLRT 447 phyloP primates LRT bigWig -20 1.951 447 mammals Basewise Conservation by PhyloP, primates subset LRT 2 4 60 60 140 140 60 60 0 0 0 compGeno 0 altColor 140,60,60\ autoScale off\ bigDataUrl https://hgdownload.soe.ucsc.edu/goldenPath/hg38/phyloP447way/hg38.phyloP447wayLRT.bw\ color 60,60,140\ configurable on\ longLabel 447 mammals Basewise Conservation by PhyloP, primates subset LRT\ maxHeightPixels 100:50:11\ noInherit on\ parent cons447wayViewphyloP\ priority 4\ shortLabel 447 phyloP primates LRT\ spanList 1\ subGroups view=phyloP\ track phyloP447wayLRT\ type bigWig -20 1.951\ viewLimits -4.5:2\ windowingFunction mean\ phyloP470wayBW 470 phyloP bigWig -20 11.936 470 mammals Basewise Conservation by PhyloP 2 4 60 60 140 140 60 60 0 0 0 compGeno 0 altColor 140,60,60\ autoScale off\ bigDataUrl https://hgdownload.soe.ucsc.edu/goldenPath/hg38/phyloP470way/hg38.phyloP470way.bw\ color 60,60,140\ configurable on\ logoMaf https://hgdownload.soe.ucsc.edu/goldenPath/hg38/multiz470way/multiz470way.bigMaf\ longLabel 470 mammals Basewise Conservation by PhyloP\ maxHeightPixels 100:50:11\ parent cons470wayViewphyloP\ priority 4\ shortLabel 470 phyloP\ spanList 1\ subGroups view=phyloP\ track phyloP470wayBW\ type bigWig -20 11.936\ viewLimits -4.5:7.5\ windowingFunction mean\ encTfChipPkENCFF330OCU A549 CBX8 narrowPeak Transcription Factor ChIP-seq Peaks of CBX8 in A549 from ENCODE 3 (ENCFF330OCU) 0 4 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of CBX8 in A549 from ENCODE 3 (ENCFF330OCU)\ parent encTfChipPk off\ shortLabel A549 CBX8\ subGroups cellType=A549 factor=CBX8\ track encTfChipPkENCFF330OCU\ cloneEndABC13 ABC13 bed 12 Agencourt fosmid library 13 0 4 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 13\ parent cloneEndSuper off\ priority 4\ shortLabel ABC13\ subGroups source=agencourt\ track cloneEndABC13\ type bed 12\ visibility hide\ covidHgiGwasR4PvalC2 All COVID vars bigLolly 9 + COVID risk variants from the COVID-19 HGI GWAS Analysis C2 (17965 cases, 33 studies, Rel 4: Oct 2020) 0 4 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22, varRep 1 bigDataUrl /gbdb/hg38/covidHgiGwas/covidHgiGwasR4.C2.hg38.bb\ longLabel COVID risk variants from the COVID-19 HGI GWAS Analysis C2 (17965 cases, 33 studies, Rel 4: Oct 2020)\ parent covidHgiGwasR4Pval on\ priority 4\ shortLabel All COVID vars\ track covidHgiGwasR4PvalC2\ dbSnp153 All dbSNP(153) bigDbSnp All Short Genetic Variants from dbSNP Release 153 1 4 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg38/snp/dbSnp153.bb\ defaultGeneTracks knownGene\ longLabel All Short Genetic Variants from dbSNP Release 153\ maxWindowToDraw 1000000\ parent dbSnp153ViewVariants off\ priority 4\ shortLabel All dbSNP(153)\ subGroups view=variants\ track dbSnp153\ dbSnp155 All dbSNP(155) bigDbSnp All Short Genetic Variants from dbSNP Release 155 1 4 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg38/snp/dbSnp155.bb\ defaultGeneTracks knownGene\ longLabel All Short Genetic Variants from dbSNP Release 155\ maxWindowToDraw 1000000\ parent dbSnp155ViewVariants off\ priority 4\ shortLabel All dbSNP(155)\ subGroups view=variants\ track dbSnp155\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep2LK2_CNhs13358_tpm_rev AorticSmsToFgf2_00hr00minBr2- bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep2 (LK2)_CNhs13358_12740-135I4_reverse 1 4 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep2%20%28LK2%29.CNhs13358.12740-135I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep2 (LK2)_CNhs13358_12740-135I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12740-135I4 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToFgf2_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep2LK2_CNhs13358_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep2LK2_CNhs13358_ctss_rev AorticSmsToFgf2_00hr00minBr2- bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep2 (LK2)_CNhs13358_12740-135I4_reverse 0 4 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep2%20%28LK2%29.CNhs13358.12740-135I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep2 (LK2)_CNhs13358_12740-135I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12740-135I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep2LK2_CNhs13358_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4\ urlLabel FANTOM5 Details:\ gtexCovArteryAorta Artery Aorta bigWig Artery Aorta 0 4 139 28 98 197 141 176 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-WYVS-0426-SM-4ONDL.Artery_Aorta.RNAseq.bw\ color 139,28,98\ longLabel Artery Aorta\ parent gtexCov\ shortLabel Artery Aorta\ track gtexCovArteryAorta\ phyloP241wayBW Basewise Cons bigWig -20 9.28 PhyloP Basewise Conservation of Zoonomia 241 Placental Mammals 2 4 60 60 140 140 60 60 0 0 0 compGeno 0 altColor 140,60,60\ autoScale off\ bigDataUrl https://hgdownload.soe.ucsc.edu/goldenPath/hg38/cactus241way/cactus241way.phyloP.bw\ color 60,60,140\ configurable on\ longLabel PhyloP Basewise Conservation of Zoonomia 241 Placental Mammals\ maxHeightPixels 100:50:11\ parent cons241wayViewphyloP\ priority 4\ shortLabel Basewise Cons\ spanList 1\ subGroups view=phyloP clade=all\ track phyloP241wayBW\ type bigWig -20 9.28\ viewLimits -4.5:7.5\ windowingFunction mean\ iscaBenignLossCum Benign Loss bedGraph 4 ClinGen CNVs: Benign Loss Coverage 2 4 200 0 0 227 127 127 0 0 0 phenDis 0 color 200,0,0\ longLabel ClinGen CNVs: Benign Loss Coverage\ parent iscaViewTotal\ shortLabel Benign Loss\ subGroups view=cov class=ben level=sub\ track iscaBenignLossCum\ bismap100Pos Bismap S100 + bigBed 6 Single-read mappability with 100-mers after bisulfite conversion (forward strand) 0 4 240 170 80 247 212 167 0 0 0 map 1 bigDataUrl /gbdb/hg38/hoffmanMappability/k100.C2T-Converted.bb\ color 240,170,80\ longLabel Single-read mappability with 100-mers after bisulfite conversion (forward strand)\ parent bismapBigBed off\ priority 4\ shortLabel Bismap S100 +\ subGroups view=SR\ track bismap100Pos\ visibility hide\ lincRNAsCTBrain_R Brain_R bed 5 + lincRNAs from brain_r 1 4 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from brain_r\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Brain_R\ subGroups view=lincRNAsRefseqExp tissueType=brain_r\ track lincRNAsCTBrain_R\ BRCA BRCA bigLolly 12 + Breast invasive carcinoma 0 4 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/BRCA.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Breast invasive carcinoma\ parent gdcCancer off\ priority 4\ shortLabel BRCA\ track BRCA\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ phyloP100way Cons 100 Verts wig -20 7.532 100 vertebrates Basewise Conservation by PhyloP 2 4 60 60 140 140 60 60 0 0 0 compGeno 0 altColor 140,60,60\ autoScale off\ color 60,60,140\ configurable on\ logoMaf multiz100way\ longLabel 100 vertebrates Basewise Conservation by PhyloP\ maxHeightPixels 100:50:11\ noInherit on\ parent cons100wayViewphyloP on\ priority 4\ shortLabel Cons 100 Verts\ spanList 1\ subGroups view=phyloP\ track phyloP100way\ type wig -20 7.532\ viewLimits -0.5:4\ windowingFunction mean\ phyloP30way Cons 30 Mammals wig -20 1.312 30 mammals Basewise Conservation by PhyloP (27 primates) 2 4 60 60 140 140 60 60 0 0 0 compGeno 0 altColor 140,60,60\ autoScale off\ color 60,60,140\ configurable on\ logoMaf multiz30way\ longLabel 30 mammals Basewise Conservation by PhyloP (27 primates)\ maxHeightPixels 100:50:11\ noInherit on\ parent cons30wayViewphyloP on\ priority 4\ shortLabel Cons 30 Mammals\ spanList 1\ subGroups view=phyloP\ track phyloP30way\ type wig -20 1.312\ viewLimits -3:1\ windowingFunction mean\ dbVar_common_decipher dbVar Curated DECIPHER SVs bigBed 9 + . NCBI dbVar Curated Common SVs: all populations from DECIPHER 3 4 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg38/bbi/dbVar/common_decipher.bb\ longLabel NCBI dbVar Curated Common SVs: all populations from DECIPHER\ parent dbVar_common on\ shortLabel dbVar Curated DECIPHER SVs\ track dbVar_common_decipher\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ unipLocExtra Extracellular bigBed 12 + UniProt Extracellular Domain 1 4 0 150 255 127 202 255 0 0 0 genes 1 bigDataUrl /gbdb/hg38/uniprot/unipLocExtra.bb\ color 0,150,255\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ itemRgb off\ longLabel UniProt Extracellular Domain\ parent uniprot\ priority 4\ shortLabel Extracellular\ track unipLocExtra\ type bigBed 12 +\ visibility dense\ geneHancerClusteredInteractionsDoubleElite GH Clusters (DE) bigInteract Clustered interactions of GeneHancer regulatory elements and genes (Double Elite) 3 4 0 0 0 127 127 127 0 0 0 https://www.genecards.org/cgi-bin/carddisp.pl?gene=$&keywords=$&prefilter=enhancers#enhancers regulation 1 bigDataUrl /gbdb/hg38/geneHancer/geneHancerInteractionsDoubleElite.v2.hg38.bb\ longLabel Clustered interactions of GeneHancer regulatory elements and genes (Double Elite)\ parent ghClusteredInteraction on\ shortLabel GH Clusters (DE)\ subGroups set=a_ELITE view=d_I\ track geneHancerClusteredInteractionsDoubleElite\ urlLabel Interaction in GeneCards\ gnomadVariantsV2 gnomAD v2 vcfTabix Genome Aggregation Database (gnomAD) Genome and Exome Variants v2.1 0 4 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The gnomAD v3.1 track shows variants from 76,156 whole genomes (and no exomes), all mapped to the\ GRCh38/hg38 reference sequence. 4,454 genomes were added to the number of genomes in the previous\ v3 release. For more detailed information on gnomAD v3.1, see the related blog post.

    \ \

    \ The gnomAD v3.1.1 track contains the same underlying data as v3.1, but\ with minor corrections to the VEP annotations and dbSNP rsIDs. On the UCSC side, we have now\ included the mitochondrial chromosome data that was released as part of gnomAD v3.1 (but after\ the UCSC version of the track was released). For more information about gnomAD v3.1.1, please\ see the related\ changelog.

    \ \

    GnomAD Genome Mutational Constraint is based on v3.1.2 and is available only on hg38. \ It shows the reduced variation caused by purifying\ natural selection. This is similar to negative selection on loss-of-function\ (LoF) for genes, but can be calculated for non-coding regions too. \ Positive values are red and reflect stronger mutation constraint (and less variation), indicating \ higher natural selection pressure in a region. Negative values are green and \ reflect lower mutation constraint \ (and more variation), indicating less selection pressure and less functional effect.\ Briefly, for any 1kbp window in\ the genome, a model based on trinucleotide sequence context, base-level\ methylation, and regional genomic features predicts expected number of mutations,\ and compares this number to the observed number of mutations using a Z-score (see preprint\ in the Reference section for details). The chrX scores were added as received from the authors,\ as there are no de novo mutation data available on chrX (for estimating the effects of regional \ genomic features on mutation rates), they are more speculative than the ones on the autosomes.

    \ \

    \ The gnomAD Predicted Constraint Metrics track contains metrics of pathogenicity per-gene as \ predicted for gnomAD v2.1.1 and identifies genes subject to strong selection against various \ classes of mutation. This includes data on both the gene and transcript level.

    \ \

    \ The gnomAD v2 tracks show variants from 125,748 exomes and 15,708 whole genomes, all mapped to\ the GRCh37/hg19 reference sequence and lifted to the GRCh38/hg38 assembly. The data originate\ from 141,456 unrelated individuals sequenced as part of various population-genetic and\ disease-specific studies\ collected by the Genome Aggregation Database (gnomAD), release 2.1.1.\ Raw data from all studies have been reprocessed through a unified pipeline and jointly\ variant-called to increase consistency across projects. For more information on the processing\ pipeline and population annotations, see the following blog post\ and the 2.1.1 README.

    \

    \ gnomAD v2 data are based on the GRCh37/hg19 assembly. These tracks display the\ GRCh38/hg38 lift-over provided by gnomAD on their downloads site.\

    \ \

    \ For questions on the gnomAD data, also see the gnomAD FAQ.

    \

    \ More details on the Variant type(s) can be found on the Sequence Ontology page.

    \ \

    Display Conventions and Configuration

    \

    gnomAD v3.1.1

    \

    \ The gnomAD v3.1.1 track version follows the same conventions and configuration as the v3.1 track,\ except as noted below.

    \ \
      \
    1. There is a Non-cancer filter used to exclude/include variants from samples of individuals who\ were not ascertained for having cancer in a cancer study.\
    2. There are additional FILTER field filters: AS_VQSR, indel_stack (chrM only), and npg (chrM only).\
    3. Where possible, variants overlapping multiple transcripts/genes have been collapsed into one\ variant, with additional information available on the details page, which has roughly halved the\ number of items in the bigBed.\
    4. The bigBed has been split into two files, one with the information necessary for the track\ display, and one with the information necessary for the details page. For more information on\ this data format, please see the Data Access section below.\
    5. The VEP annotation is shown as a table instead of spread across multiple fields.\
    6. Intergenic variants have not been pre-filtered.\
    \ \

    gnomAD v3.1

    \

    \ By default, a maximum of 50,000 variants can be displayed at a time (before applying the filters\ described below), before the track switches to dense display mode.\

    \ \

    \ Mouse hover on an item will display many details about each variant, including the affected gene(s),\ the variant type, and annotation (missense, synonymous, etc).\

    \ \

    \ Clicking on an item will display additional details on the variant, including a population frequency\ table showing allele count in each sub-population.\

    \ \

    \ Following the conventions on the gnomAD browser, items are shaded according to their Annotation\ type:\ \ \ \ \ \
    pLoF
    Missense
    Synonymous
    Other
    \

    \ \

    Label Options

    \

    \ To maintain consistency with the gnomAD website, variants are by default labeled according\ to their chromosomal start position followed by the reference and alternate alleles,\ for example "chr1-1234-T-CAG". dbSNP rsID's are also available as an additional\ label, if the variant is present in dbSnp.\

    \ \

    Filtering Options

    \

    \ Three filters are available for these tracks:\

    \
      \
    • FILTER: Used to exclude/include variants that failed Random Forest\ (RF), Inbreeding Coefficient (Inbreeding Coeff), or Allele Count (AC0) filters. The\ PASS option is used to include/exclude variants that pass all of the RF,\ InbreedingCoeff, and AC0 filters, as denoted in the original VCF.\
    • Annotation type: Used to exclude/include variants that are annotated as\ Probability Loss of Function (pLoF), Missense, Synonymous, or Other, as\ annotated by VEP version 85 (GENCODE v19).\
    • Variant Type: Used to exclude/include variants according to the type of\ variation, as annotated by VEP v85.\
    \ There is one additional configurable filter on the minimum minor allele frequency.\ \

    gnomAD v2.1.1

    \

    \ The gnomAD v2.1.1 track follows the standard display and configuration options available for\ VCF tracks, briefly explained below.\

    \
      \
    • In mode, a vertical line is drawn at the position of\ each variant.
      • \
    • In mode, "ref" and "alt" alleles are\ displayed to the left of a vertical line with colored portions corresponding to allele counts.\ Hovering the mouse pointer over a variant pops up a display of alleles and counts.
      • \
    \ \

    Filtering Options

    \

    \ Four filters are available for these tracks, the same as the underlying VCF:\

      \
    • AC0: Allele Count 0 after filtering out low confidence genotypes (GQ < 20; DP < 10; and AB < 0.2 for het calls))\
    • InbreedingCoeff: Inbreeding Coefficient < -0.3\
    • RF: Used to exclude/include variants that failed Random Forest filtering thresholds of 0.055272738028512555, 0.20641025579497013 (probabilities of being a true positive variant) for SNPs, indels)\
    • Pass: Variant passes all 3 filters\
    \

    \ \

    \ There are two additional filters available, one for the minimum minor allele frequency, and a configurable filter on the QUAL score.\

    \ \ \

    UCSC Methods

    \

    \ The gnomAD v3.1.1 data is unfiltered.

    \

    \ For the v3.1 update only, in order to cut \ down on the amount of displayed data, the following variant\ types have been filtered out, but are still viewable in the gnomAD browser:\

      \
    • Regulatory Region Variants\
    • Downstream/Upstream Gene Variants\
    • Transcription Factor Binding Site Variants\
    \

    \ \

    \ For the full steps used to create the track at UCSC, please see the section\ denoted "gnomAD v3.1 update" in the hg38 makedoc.\

    \ \ \

    Data Access

    \ \

    \ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that\ can be downloaded from our download server, subject\ to the conditions set forth by the gnomAD consortium (see below). Variant VCFs can be found in the\ vcf/ subdirectory. The\ v3.1 and\ v3.1.1 variants can\ be found in a special directory as they have been transformed from the underlying VCF.

    \ \

    \ For the v3.1.1 variants in particular, the underlying bigBed only contains enough information\ necessary to use the track in the browser. The extra data like VEP annotations and CADD scores are\ available in the same directory\ as the bigBed but in the files gnomad.v3.1.1.details.tab.gz and\ gnomad.v3.1.1.details.tab.gz.gzi. The gnomad.v3.1.1.details.tab.gz contains the gzip\ compressed extra data in JSON format, and the .gzi file is available to speed searching of\ this data. Each variant has an associated md5sum in the name field of the bigBed which can be\ used along with the _dataOffset and _dataLen fields to get the associated external data, as show\ below:\ 

    \
# find item of interest:\
bigBedToBed genomes.bb stdout | head -4 | tail -1\
chr1    12416    12417    854246d79dc5d02dcdbd5f5438542b6e    [..omitted for brevity..]    chr1-12417-G-A    67293    902\
\
# use the final two fields, _dataOffset and _dataLen (add one to _dataLen to include a newline), to get the extra data:\
bgzip -b 67293 -s 903 gnomad.v3.1.1.details.tab.gz\
854246d79dc5d02dcdbd5f5438542b6e    {"DDX11L1": {"cons": ["non_coding_transcript_variant",  [..omitted for brevity..]\
    \ \

    \ The data can also be found directly from the gnomAD downloads page. Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.

    \ \

    The mutational constraints score was updated in October 2022 from a previous,\ now deprecated, pre-publication version. The old version can be found in our\ archive\ directory on the download server. It can be loaded by copying the URL into\ our "Custom tracks" input box.

    \ \

    Credits

    \

    \ Thanks to the Genome Aggregation\ Database Consortium for making these data available. The data are released under the ODC Open Database License\ (ODbL) as described here.\

    \ \

    References

    \ \

    \ Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alfoldi J, Wang Q, Collins RL, Laricchia KM,\ Ganna A, Birnbaum DP et al.\ Variation across\ 141,456 human exomes and genomes reveals the spectrum of loss-of-function intolerance across human\ protein-coding genes. doi: https://doi.org/10.1101/531210.\

    \

    \ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ Analysis of protein-coding\ genetic variation in 60,706 humans. Nature. 2016 Aug 17;536(7616):285-91.\ PMID: 27535533;\ PMC: PMC5018207\

    \

    \ Chen S, Francioli L, Goodrich J, Collins R, Wang Q, Alfoldi J, Watts N, Vittal C, Gauthier L, Poterba T, Wilson M\ \ A genome-wide mutational constraint map quantified from variation in 76,156 human genomes. Biorxiv 2022 \

    \ varRep 1 compositeTrack on\ configureByPopup off\ dataVersion Release 2.1.1 (March 6, 2019)\ html gnomadV3_1_1\ longLabel Genome Aggregation Database (gnomAD) Genome and Exome Variants v2.1\ maxWindowToDraw 200000\ parent gnomadVariants\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 4\ shortLabel gnomAD v2\ showHardyWeinberg on\ track gnomadVariantsV2\ type vcfTabix\ visibility hide\ wgEncodeRegTxnCaltechRnaSeqHepg2R2x75Il200SigPooled HepG2 bigWig 0 65535 Transcription of HepG2 cells from ENCODE 0 4 128 255 149 191 255 202 0 0 0 regulation 1 color 128,255,149\ longLabel Transcription of HepG2 cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegTxn\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 4\ shortLabel HepG2\ track wgEncodeRegTxnCaltechRnaSeqHepg2R2x75Il200SigPooled\ type bigWig 0 65535\ hffc6MicroC HFFc6 Micro-C hic Micro-C Chromatin Structure on HFFc6 0 4 0 0 0 127 127 127 0 0 0 regulation 1 bigDataUrl /gbdb/hg38/bbi/hic/4DNFI18Q799K.hic\ longLabel Micro-C Chromatin Structure on HFFc6\ parent hicAndMicroC off\ shortLabel HFFc6 Micro-C\ track hffc6MicroC\ type hic\ netHprcGCA_018466985v1 HG02559.mat netAlign GCA_018466985.1 chainHprcGCA_018466985v1 HG02559.mat HG02559.pri.mat.f1_v2 (May 2021 GCA_018466985.1_HG02559.pri.mat.f1_v2) HPRC project computed Chain Nets 1 4 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02559.mat HG02559.pri.mat.f1_v2 (May 2021 GCA_018466985.1_HG02559.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018466985.1\ parent hprcChainNetViewnet off\ priority 20\ shortLabel HG02559.mat\ subGroups view=net sample=s020 population=afr subpop=acb hap=mat\ track netHprcGCA_018466985v1\ type netAlign GCA_018466985.1 chainHprcGCA_018466985v1\ highReproRegions Highly Reproducible Regions bigBed 9 + Highly Reproducible Regions 1 4 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/problematic/highRepro/highRepro.bb\ filterType.sampleNames multipleListOr\ filterValues.sampleNames CQ-56,CQ-7,CQ-8,HR_NA10835,HR_NA12248,HR_NA12249,HR_NA12878\ longLabel Highly Reproducible Regions\ parent highReproBeds\ shortLabel Highly Reproducible Regions\ subGroups view=beds\ track highReproRegions\ type bigBed 9 +\ wgEncodeRegDnaseUwHmecPeak HMEC Pk narrowPeak HMEC mammary epithelium DNaseI Peaks from ENCODE 1 4 255 112 85 255 183 170 1 0 0 regulation 1 color 255,112,85\ longLabel HMEC mammary epithelium DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HMEC Pk\ subGroups view=a_Peaks cellType=HMEC treatment=n_a tissue=breast cancer=normal\ track wgEncodeRegDnaseUwHmecPeak\ wgEncodeRegDnaseUwHmecWig HMEC Sg bigWig 0 32097.2 HMEC mammary epithelium DNaseI Signal from ENCODE 0 4 255 112 85 255 183 170 0 0 0 regulation 1 color 255,112,85\ longLabel HMEC mammary epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.02847\ shortLabel HMEC Sg\ subGroups cellType=HMEC treatment=n_a tissue=breast cancer=normal\ table wgEncodeRegDnaseUwHmecSignal\ track wgEncodeRegDnaseUwHmecWig\ type bigWig 0 32097.2\ wgEncodeRegMarkH3k4me1Huvec HUVEC bigWig 0 4666 H3K4Me1 Mark (Often Found Near Regulatory Elements) on HUVEC Cells from ENCODE 0 4 128 212 255 191 233 255 0 0 0 regulation 1 color 128,212,255\ longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on HUVEC Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k4me1\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel HUVEC\ table wgEncodeBroadHistoneHuvecH3k4me1StdSig\ track wgEncodeRegMarkH3k4me1Huvec\ type bigWig 0 4666\ wgEncodeRegMarkH3k4me3Huvec HUVEC bigWig 0 7852 H3K4Me3 Mark (Often Found Near Promoters) on HUVEC Cells from ENCODE 0 4 128 212 255 191 233 255 0 0 0 regulation 1 color 128,212,255\ longLabel H3K4Me3 Mark (Often Found Near Promoters) on HUVEC Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k4me3\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel HUVEC\ table wgEncodeBroadHistoneHuvecH3k4me3StdSig\ track wgEncodeRegMarkH3k4me3Huvec\ type bigWig 0 7852\ wgEncodeRegMarkH3k27acHuvec HUVEC bigWig 0 3721 H3K27Ac Mark (Often Found Near Regulatory Elements) on HUVEC Cells from ENCODE 2 4 128 212 255 191 233 255 0 0 0 regulation 1 color 128,212,255\ longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on HUVEC Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k27ac\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel HUVEC\ table wgEncodeBroadHistoneHuvecH3k27acStdSig\ track wgEncodeRegMarkH3k27acHuvec\ type bigWig 0 3721\ xGen_Research_Targets_V2 IDT xGen V2 T bigBed IDT - xGen Exome Research Panel V2 Target Regions 1 4 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/xgen-exome-research-panel-v2-targets-hg38.bb\ color 100,143,255\ longLabel IDT - xGen Exome Research Panel V2 Target Regions\ parent exomeProbesets on\ shortLabel IDT xGen V2 T\ track xGen_Research_Targets_V2\ type bigBed\ visibility dense\ snpArrayIllumina450k Illumina 450k bigBed 6 Illumina 450k Methylation Array 3 4 0 0 0 127 127 127 0 0 0

    Description

    \

    Agilent Arrays

    \

    \ The arrays listed in this track are probes from the\ Agilent Catalog Oligonucleotide Microarrays.\

    \

    Please note that more microarray tracks are available on the hg19 genome assembly. \ To view those tracks, please \ click this link for hg19 microarrays.\ Microarrays that are not listed can be added as Custom Tracks with data from the companies.\

    \

    \ Agilent GenetiSure Cyto\

    \

    \ Agilent's oligonucleotide CGH (Comparative Genomic Hybridization) platform enables the\ study of genome-wide DNA copy number changes at a high resolution. The CGH probes on Agilent\ CGH microarrays are 60-mer oligonucleotides synthesized in situ using Agilent's inkjet\ SurePrint technology. The probes represented on the Agilent CGH microarrays have been\ selected using algorithms developed specifically for the CGH application, assuring optimal\ performance of these probes in detecting DNA copy number changes.\

    \ \

    Illumina 450k and 850k Methylation Arrays

    \

    \ With the Infinium MethylationEPIC BeadChip Kit, researchers can interrogate over 850,000\ methylation sites quantitatively across the genome at single-nucleotide resolution. Multiple\ samples, including FFPE, can be analyzed in parallel to deliver high-throughput power while\ minimizing the cost per sample. These tracks show positions being measured on the Illumina 450k and\ 850k (EPIC) microarray tracks. More information about the arrays can be found on the\ Infinium MethylationEPIC Kit website.\ \

    Illumina CytoSNP 850K Probe Array

    \

    \ The Infinium CytoSNP-850K v1.2 BeadChip provides comprehensive coverage of\ cytogenetically relevant genes on a proven platform, helping researchers find valuable information\ that may be missed by other technologies. It contains approximately 850,000 empirically selected\ single nucleotide polymorphisms (SNPs) spanning the entire genome with enriched coverage for 3,262\ genes of known cytogenetics relevance in both constitutional and cancer applications. \

    \ \

    Affymetrix Cytoscan HD GeneChip Array

    \

    \ The CytoScan HD Array, which is included in the\ CytoScan HD Suite, provides the broadest coverage and highest performance for\ detecting chromosomal aberrations. CytoScan HD Suite has greater than 99% sensitivity and can\ reliably detect 25-50kb copy number changes across the genome at high specificity with\ single-nucleotide polymorphism (SNP) allelic corroboration. With more than 2.6 million copy number\ markers, CytoScan HD Suite covers all OMIM and RefSeq genes.\

    \ \ \ \

    Display Conventions and Configuration

    \ \

    \ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

    \ \ \

    Methods

    \

    \ The Agilent arrays were downloaded from their \ Agilent SureDesign website tool on March 2022.

    \

    \ The Illumina 450k and 850k (EPIC) tracks were created using a few columns from the\ Infinium MethylationEPIC v1.0 B5 Manifest File (CSV Format)\ and was then converted into a bigBed.

    \

    \ The Illumina CytoSNP-850K track was created by downloading the\ CytoSNP-850K v1.2 Manifest File (CSV Format) (GRCh38) file and then converted\ into a bigBed file.\

    \

    \ The Affymetrix Cytoscan HD GeneChip Array track was created by converting the \ CytoScanHD_Accel_Array.na36.bed.zip\ into a bigBed file.\

    \ \

    Data Access

    \

    \ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated analysis, the data may be queried from our\ REST API \ or downloaded from our \ Downloads site. Please refer to our\ \ mailing list archives for questions, or our\ \ Data Access FAQ for more information.\

    \ \

    Credits

    \

    \ Thanks to the Aliglent and Illumina support teams for sharing the data and the UCSC Genome Browser\ engineers for configuring the data.

    \ varRep 1 bigDataUrl /gbdb/hg38/bbi/illumina/illumina450K.bb\ colorByStrand 255,0,0 0,0,255\ html genotypeArrays\ longLabel Illumina 450k Methylation Array\ noScoreFilter on\ parent genotypeArrays on\ priority 4\ shortLabel Illumina 450k\ track snpArrayIllumina450k\ type bigBed 6\ urls refGeneAccession="https://www.ncbi.nlm.nih.gov/nuccore/$$" rsID="https://www.ncbi.nlm.nih.gov/snp/?term=$$"\ visibility pack\ unipInterest Interest bigBed 12 + UniProt Regions of Interest 1 4 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg38/uniprot/unipInterest.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ itemRgb off\ longLabel UniProt Regions of Interest\ parent uniprot\ priority 4\ shortLabel Interest\ track unipInterest\ type bigBed 12 +\ visibility dense\ jaspar2018 JASPAR 2018 TFBS bigBed 6 + JASPAR CORE 2018 - Predicted Transcription Factor Binding Sites 3 4 0 0 0 127 127 127 1 0 0 http://jaspar.genereg.net/search?q=$$&collection=all&tax_group=all&tax_id=all&type=all&class=all&family=all&version=all regulation 1 bigDataUrl /gbdb/hg38/jaspar/JASPAR2018.bb\ filterValues.name Ahr::Arnt,Alx1,ALX3,Alx4,Ar,Arid3a,Arid3b,Arid5a,Arnt,ARNT::HIF1A,Arntl,Arx,ASCL1,Ascl2,Atf1,Atf3,ATF4,ATF7,Atoh1,Bach1::Mafk,BACH2,Barhl1,BARHL2,BARX1,BATF3,BATF::JUN,Bcl6,BCL6B,Bhlha15,BHLHE22,BHLHE23,BHLHE40,BHLHE41,BSX,CDX1,CDX2,CEBPA,CEBPB,CEBPD,CEBPE,CEBPG,CENPB,CLOCK,CREB1,CREB3,CREB3L1,Creb3l2,Creb5,Crem,Crx,CTCF,CTCFL,CUX1,CUX2,DBP,Ddit3::Cebpa,Dlx1,Dlx2,Dlx3,Dlx4,DLX6,Dmbx1,DMRT3,Dux,DUX4,DUXA,E2F1,E2F2,E2F3,E2F4,E2F6,E2F7,E2F8,EBF1,EGR1,EGR2,EGR3,EGR4,EHF,ELF1,ELF3,ELF4,ELF5,ELK1,ELK3,ELK4,EMX1,EMX2,EN1,EN2,EOMES,ERF,ERG,ESR1,ESR2,Esrra,ESRRB,Esrrg,ESX1,ETS1,ETV1,ETV2,ETV3,ETV4,ETV5,ETV6,EVX1,EVX2,EWSR1-FLI1,FEV,FIGLA,FLI1,FOS,FOSB::JUN,FOSB::JUNB,FOSB::JUNB(var.2),FOS::JUN,FOS::JUNB,FOS::JUND,FOS::JUN(var.2),FOSL1,FOSL1::JUN,FOSL1::JUNB,FOSL1::JUND,FOSL1::JUND(var.2),FOSL1::JUN(var.2),FOSL2,FOSL2::JUN,FOSL2::JUNB,FOSL2::JUNB(var.2),FOSL2::JUND,FOSL2::JUND(var.2),FOSL2::JUN(var.2),FOXA1,Foxa2,FOXB1,FOXC1,FOXC2,FOXD1,FOXD2,Foxd3,FOXF2,FOXG1,FOXH1,FOXI1,Foxj2,Foxj3,FOXK1,FOXK2,FOXL1,Foxo1,FOXO3,FOXO4,FOXO6,FOXP1,FOXP2,FOXP3,Foxq1,Gabpa,Gata1,GATA1::TAL1,GATA2,GATA3,Gata4,GATA5,GATA6,GBX1,GBX2,GCM1,GCM2,Gfi1,Gfi1b,GLI2,GLIS1,GLIS2,GLIS3,Gmeb1,GMEB2,GRHL1,GRHL2,GSC,GSC2,GSX1,GSX2,Hand1::Tcf3,Hes1,Hes2,HES5,HES7,HESX1,HEY1,HEY2,Hic1,HIC2,HIF1A,HINFP,HLF,HLTF,HMBOX1,Hmx1,Hmx2,Hmx3,HNF1A,HNF1B,Hnf4a,HNF4G,HOXA10,Hoxa11,HOXA13,HOXA2,HOXA5,Hoxa9,HOXB13,HOXB2,HOXB3,Hoxb5,HOXC10,HOXC11,HOXC12,HOXC13,Hoxc9,HOXD11,HOXD12,HOXD13,Hoxd3,Hoxd8,Hoxd9,HSF1,HSF2,HSF4,Id2,ID4,INSM1,IRF1,IRF2,IRF3,IRF4,IRF5,IRF7,IRF8,IRF9,ISL2,ISX,JDP2,JDP2(var.2),JUN,JUNB,JUNB(var.2),JUND,JUND(var.2),JUN::JUNB,JUN::JUNB(var.2),JUN(var.2),Klf1,Klf12,KLF13,KLF14,KLF16,KLF4,KLF5,KLF9,LBX1,LBX2,LEF1,LHX2,Lhx3,Lhx4,LHX6,Lhx8,LHX9,LIN54,LMX1A,LMX1B,Mafb,MAFF,MAFG,MAFG::NFE2L1,MAFK,MAF::NFE2,MAX,MAX::MYC,Mecom,MEF2A,MEF2B,MEF2C,MEF2D,MEIS1,MEIS2,MEIS3,MEOX1,MEOX2,MGA,MITF,mix-a,MIXL1,MLX,Mlxip,MLXIPL,MNT,MNX1,MSC,MSX1,MSX2,Msx3,MTF1,MXI1,MYB,MYBL1,MYBL2,MYC,MYCN,MYF6,Myod1,Myog,MZF1,MZF1(var.2),NEUROD1,NEUROD2,Neurog1,NEUROG2,NFAT5,NFATC1,NFATC2,NFATC3,NFE2,Nfe2l2,NFIA,NFIC,NFIC::TLX1,NFIL3,NFIX,NFKB1,NFKB2,NFYA,NFYB,NHLH1,NKX2-3,Nkx2-5,Nkx2-5(var.2),NKX2-8,Nkx3-1,NKX3-2,NKX6-1,NKX6-2,Nobox,NOTO,Npas2,NR1A4::RXRA,NR1H2::RXRA,Nr1h3::Rxra,NR1H4,NR2C2,Nr2e1,Nr2e3,NR2F1,NR2F2,Nr2f6,Nr2f6(var.2),NR3C1,NR3C2,NR4A1,NR4A2,NR4A2::RXRA,Nr5a2,NRF1,NRL,OLIG1,OLIG2,OLIG3,ONECUT1,ONECUT2,ONECUT3,OTX1,OTX2,PAX1,Pax2,PAX3,PAX4,PAX5,Pax6,PAX7,PAX9,PBX1,PBX2,PBX3,PDX1,PHOX2A,Phox2b,Pitx1,PITX3,PKNOX1,PKNOX2,PLAG1,POU1F1,POU2F1,POU2F2,Pou2f3,POU3F1,POU3F2,POU3F3,POU3F4,POU4F1,POU4F2,POU4F3,POU5F1,POU5F1B,Pou5f1::Sox2,POU6F1,POU6F2,PPARA::RXRA,PPARG,Pparg::Rxra,PRDM1,PROP1,PROX1,PRRX1,Prrx2,RARA,RARA::RXRA,RARA::RXRG,RARA(var.2),Rarb,Rarb(var.2),Rarg,Rarg(var.2),RAX,RAX2,RBPJ,REL,RELA,RELB,REST,Rfx1,RFX2,RFX3,RFX4,RFX5,Rhox11,RHOXF1,RORA,RORA(var.2),RORB,RORC,RREB1,RUNX1,RUNX2,RUNX3,Rxra,RXRA::VDR,RXRB,RXRG,SCRT1,SCRT2,SHOX,Shox2,SIX1,SIX2,Six3,SMAD2::SMAD3::SMAD4,SMAD3,Smad4,SNAI2,Sox1,SOX10,Sox11,SOX13,SOX15,Sox17,Sox2,SOX21,Sox3,SOX4,Sox5,Sox6,SOX8,SOX9,SP1,SP2,SP3,SP4,SP8,SPDEF,SPI1,SPIB,SPIC,Spz1,SREBF1,Srebf1(var.2),SREBF2,SREBF2(var.2),SRF,SRY,STAT1,STAT1::STAT2,STAT3,Stat4,Stat5a::Stat5b,Stat6,T,TAL1::TCF3,TBP,TBR1,TBX1,TBX15,TBX19,TBX2,TBX20,TBX21,TBX4,TBX5,Tcf12,Tcf21,TCF3,TCF4,Tcf7,TCF7L1,TCF7L2,Tcfl5,TEAD1,TEAD2,TEAD3,TEAD4,TEF,TFAP2A,TFAP2A(var.2),TFAP2A(var.3),TFAP2B,TFAP2B(var.2),TFAP2B(var.3),TFAP2C,TFAP2C(var.2),TFAP2C(var.3),TFAP4,TFCP2,TFDP1,TFE3,TFEB,TFEC,TGIF1,TGIF2,THAP1,TP53,TP63,TP73,TWIST1,Twist2,UNCX,USF1,USF2,VAX1,VAX2,VDR,VENTX,VSX1,VSX2,XBP1,YY1,YY2,ZBED1,ZBTB18,ZBTB33,ZBTB7A,ZBTB7B,ZBTB7C,ZEB1,Zfx,ZIC1,ZIC3,ZIC4,ZNF143,ZNF24,ZNF263,ZNF282,ZNF354C,ZNF384,ZNF410,Znf423,ZNF740,ZSCAN4\ longLabel JASPAR CORE 2018 - Predicted Transcription Factor Binding Sites\ parent jaspar off\ priority 4\ shortLabel JASPAR 2018 TFBS\ track jaspar2018\ type bigBed 6 +\ visibility pack\ revelT Mutation: T bigWig REVEL: Mutation is T 1 4 150 80 200 202 167 227 0 0 0 phenDis 0 bigDataUrl /gbdb/hg38/revel/t.bw\ longLabel REVEL: Mutation is T\ maxHeightPixels 128:20:8\ maxWindowToDraw 10000000\ maxWindowToQuery 500000\ mouseOverFunction noAverage\ parent revel on\ shortLabel Mutation: T\ track revelT\ type bigWig\ viewLimits 0:1.0\ viewLimitsMax 0:1.0\ visibility dense\ caddT Mutation: T bigWig CADD 1.6 Score: Mutation is T 1 4 100 130 160 177 192 207 0 0 0 phenDis 0 bigDataUrl /gbdb/hg38/cadd/t.bw\ longLabel CADD 1.6 Score: Mutation is T\ maxHeightPixels 128:20:8\ parent cadd on\ shortLabel Mutation: T\ track caddT\ type bigWig\ viewLimits 10:50\ viewLimitsMax 0:100\ visibility dense\ wgEncodeGencodePolyaV42 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 42 (Ensembl 108) 0 4 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 42 (Ensembl 108)\ parent wgEncodeGencodeV42ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=bPolya name=zPolyA\ track wgEncodeGencodePolyaV42\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV43 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 43 (Ensembl 109) 0 4 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 43 (Ensembl 109)\ parent wgEncodeGencodeV43ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=bPolya name=zPolyA\ track wgEncodeGencodePolyaV43\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV44 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 44 (Ensembl 110) 0 4 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 44 (Ensembl 110)\ parent wgEncodeGencodeV44ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=bPolya name=zPolyA\ track wgEncodeGencodePolyaV44\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV45 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 45 (Ensembl 111) 0 4 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 45 (Ensembl 111)\ parent wgEncodeGencodeV45ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=bPolya name=zPolyA\ track wgEncodeGencodePolyaV45\ trackHandler wgEncodeGencode\ type genePred\ tgpHG00733_PR05_PUR PR05 PUR Trio vcfPhasedTrio 1000 Genomes Puerto Ricans from Puerto Rico Trio 2 4 0 0 0 127 127 127 0 0 23 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX, varRep 0 longLabel 1000 Genomes Puerto Ricans from Puerto Rico Trio\ parent tgpTrios\ shortLabel PR05 PUR Trio\ track tgpHG00733_PR05_PUR\ type vcfPhasedTrio\ vcfChildSample HG00733|child\ vcfParentSamples HG00732|mother,HG00731|father\ visibility full\ recombEvents Recomb. deCODE Evts bigBed 4 + Recombination events in deCODE Genetic Map (zoom to < 10kbp to see the events) 0 4 0 130 0 127 192 127 0 0 0

    Description

    \

    \ The recombination rate track represents calculated rates of recombination based\ on the genetic maps from deCODE (Halldorsson et al., 2019) and 1000 Genomes\ (2013 Phase 3 release, lifted from hg19). The deCODE map is more recent, has a higher \ resolution and was natively created on hg38 and therefore recommended. \ For the Recomb. deCODE average track, the recombination rates for chrX represent the female rate.\

    \ \

    This track also includes a subtrack with all the\ individual deCODE recombination events and another subtrack with several thousand\ de-novo mutations found in the deCODE sequencing data. These two tracks are hidden by\ default and have to be switched on explicitly on the configuration page.\

    \ \

    Display Conventions and Configuration

    \

    \ This is a super track that contains different subtracks, three with the deCODE\ recombination rates (paternal, maternal and average) and one with the 1000\ Genomes recombination rate (average). These tracks are in \ signal graph\ (wiggle) format. By default, to show most recombination hotspots, their maximum\ value is set to 100 cM, even though many regions have values higher than 100.\ The maximum value can be changed on the configuration pages of the tracks.\

    \ \

    \ There are two more tracks that show additional details provided by deCODE: one\ subtrack with the raw data of all cross-overs tagged with their proband ID and\ another one with around 8000 human de-novo mutation variants that are linked to\ cross-over changes.\

    \ \

    Methods

    \

    \ The deCODE genetic map was created at \ deCODE Genetics. It is based \ on microarrays assaying 626,828 SNP markers that allowed to identify 1,476,140 crossovers in\ 56,321 paternal meioses and 3,055,395 crossovers in 70,086 maternal meioses.\ In total, the data is based on 4,531,535 crossovers in 126,427 meioses. By\ using WGS data with 9,305,070 SNPs, the boundaries for 761,981 crossovers were\ refined: 247,942 crossovers in 9423 paternal meioses and 514,039 crossovers in\ 11,750 maternal meioses. The average resolution of the genetic map is 682 base\ pairs (bp): 655 and 708 bp for the paternal and maternal maps, respectively.\

    \ \

    The 1000 Genomes genetic map is based on the IMPUTE genetic map based on 1000 Genomes Phase 3, on hg19 coordinates. It\ was converted to hg38 by Po-Ru Loh at the Broad Institute. After a run of \ liftOver, he post-processed the data to deal with situations in which\ consecutive map locations became much closer/farther after lifting. The\ heuristic used is sufficient for statistical phasing but may not be optimal for\ other analyses. For this reason, and because of its higher resolution, the DeCODE\ map is therefore recommended for hg38.\

    \ \

    As with all other tracks, the data conversion commands and pointers to the\ original data files are documented in the \ makeDoc file of this track.

    \ \

    Data Access

    \

    \ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\

    \ \

    \ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

    \ bigWigToBedGraph -chrom=chr17 -start=45941345 -end=45942345 http://hgdownload.soe.ucsc.edu/gbdb/hg38/recombRate/recombAvg.bw stdout\
    \

    \ \

    \ Please refer to our\ Data Access FAQ\ for more information.\

    \ \

    Credits

    \

    \ This track was produced at UCSC using data that are freely available for\ the deCODE\ and 1000 Genomes genetic maps. Thanks to Po-Ru Loh at the\ Broad Institute for providing the code to lift the hg19 1000 Genomes map data to hg38.\

    \ \

    References

    \

    \ 1000 Genomes Project Consortium., Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA,\ Hurles ME, McVean GA.\ \ A map of human genome variation from population-scale sequencing.\ Nature. 2010 Oct 28;467(7319):1061-73.\ PMID: 20981092; PMC: PMC3042601\

    \ \

    \ Halldorsson BV, Palsson G, Stefansson OA, Jonsson H, Hardarson MT, Eggertsson HP, Gunnarsson B,\ Oddsson A, Halldorsson GH, Zink F et al.\ \ Characterizing mutagenic effects of recombination through a sequence-level genetic map.\ Science. 2019 Jan 25;363(6425).\ PMID: 30679340\

    \ map 1 bigDataUrl /gbdb/hg38/recombRate/events.bb\ html recombRate2.html\ longLabel Recombination events in deCODE Genetic Map (zoom to < 10kbp to see the events)\ parent recombRate2\ priority 4\ shortLabel Recomb. deCODE Evts\ track recombEvents\ type bigBed 4 +\ visibility hide\ ncbiRefSeqOther RefSeq Other bigBed 12 + NCBI RefSeq Other Annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*) 1 4 32 32 32 143 143 143 0 0 0 genes 1 bigDataUrl /gbdb/hg38/ncbiRefSeq/ncbiRefSeqOther.bb\ color 32,32,32\ labelFields gene\ longLabel NCBI RefSeq Other Annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*)\ parent refSeqComposite off\ priority 4\ searchIndex name\ searchTrix /gbdb/hg38/ncbiRefSeq/ncbiRefSeqOther.ix\ shortLabel RefSeq Other\ skipEmptyFields on\ track ncbiRefSeqOther\ type bigBed 12 +\ urls GeneID="https://www.ncbi.nlm.nih.gov/gene/$$" MIM="https://www.ncbi.nlm.nih.gov/omim/612091" HGNC="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$$" FlyBase="http://flybase.org/reports/$$" WormBase="http://www.wormbase.org/db/gene/gene?name=$$" RGD="https://rgd.mcw.edu/rgdweb/search/search.html?term=$$" SGD="https://www.yeastgenome.org/locus/$$" miRBase="http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$$" ZFIN="https://zfin.org/$$" MGI="http://www.informatics.jax.org/marker/$$"\ joinedRmsk RepeatMasker Viz. bed 3 + Detailed Visualization of RepeatMasker Annotations 0 4 0 0 0 127 127 127 1 0 0

    Description

    \ \

    \ This track was created using Arian Smit's\ RepeatMasker\ program, which screens DNA sequences\ for interspersed repeats and low complexity DNA sequences. The program\ outputs a detailed annotation of the repeats that are present in the\ query sequence (represented by this track), as well as a modified version\ of the query sequence in which all the annotated repeats have been masked\ (generally available on the\ Downloads page). RepeatMasker uses a separately curated version of the \ Repbase Update repeat library from the\ Genetic \ Information Research Institute (GIRI).\ Repbase Update is described in Jurka (2000) in the References section below.

    \

    \ Alternatively, RepeatMasker can use the new\ Dfam database of repeat profile HMMs.\ Profile HMMs provide a richer description of the repeat families and when used with\ RepeatMasker + nhmmer provide a more\ sensitive approach to identifying repeats. Dfam is described in Wheeler et al. (2012)\ in the References section below.\

    \ \

    Display Conventions and Configuration

    \ \

    \ In dense display mode, a single line is displayed denoting the coverage of repeats using a series\ of black boxes. \

    \

    \ In full display mode, the track view is controlled by the scale of the view. At scales between 10 Mb\ and 30 kb, this track displays up to ten different classes of repeats (see below) one class per\ line. The repeat ranges are denoted as grayscale boxes, reflecting both the size of the repeat and\ the amount of base mismatch, base deletion, and base insertion associated with a repeat element.\ The higher the combined number of these, the lighter the shading.\

    \

    \ In full display mode and at scales less than 30 kb, a new detailed display mode is used. Repeats\ are displayed as arrow boxes, indicating the size and orientation of the repeat. The interior\ grayscale shading represents the divergence of the repeat (see above) while the outline color\ represents the class of the repeat. Dotted lines above the repeat and extending left or right\ indicate the length of unaligned repeat consensus sequence. If the length of the unaligned sequence\ is large, a double interruption line is used to indicate that the unaligned sequence is not to scale. \

    \

    \ For example, the following repeat is a SINE element in the forward orientation with average\ divergence. Only the 5' proximal fragment of the consensus sequence is aligned to the genome.\ The 3' unaligned length (384bp) is not drawn to scale and is instead displayed using a set of\ interruption lines along with the length of the unaligned sequence.\

    \ \ \ \ \ Layer 1\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ 384\ \ \ \

    \ Repeats that have been fragmented by insertions or large internal deletions are now represented\ by join lines. In the example below, a LINE element is found as two fragments. The solid\ connection lines indicate that there are no unaligned consensus bases between the two fragments.\ Also note these fragments represent the end of the repeat, as there is no unaligned consensus\ sequence following the last fragment.\

    \ \ \ \ \ Layer 1\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \

    \ In cases where there is unaligned consensus sequence between the fragments, the repeat will look like\ the following. The dotted line indicates the length of the unaligned sequence between the two\ fragments. In this case the unaligned consensus is longer than the actual genomic distance between\ these two fragments.\

    \ \ \ \ \ Layer 1\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \

    \ If there is consensus overlap between the two fragments, the joining lines will be drawn to indicate\ how much of the left fragment is repeated in the right fragment. \

    \ \ \ \ \ Layer 1\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \

    \ The following table lists the repeat class colors:\

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorRepeat Class
    SINE - Short Interspersed Nuclear Element
    LINE - Long Interspersed Nuclear Element
    LTR - Long Terminal Repeat
    DNA - DNA Transposon
    Simple - Single Nucleotide Stretches and Tandem Repeats
    Low_complexity - Low Complexity DNA
    Satellite - Satellite Repeats
    RNA - RNA Repeats (including RNA, tRNA, rRNA, snRNA, scRNA, srpRNA)
    Other - Other Repeats (including class RC - Rolling Circle)
    Unknown - Unknown Classification
    \

    \ \

    \ A "?" at the end of the "Family" or "Class" (for example, DNA?)\ signifies that the curator was unsure of the classification. At some point in the future,\ either the "?" will be removed or the classification will be changed.

    \ \

    Methods

    \ \

    \ UCSC has used the most current versions of the RepeatMasker software\ and repeat libraries available to generate these data. Note that these\ versions may be newer than those that are publicly available on the Internet.\

    \

    \ Data are generated using the RepeatMasker -s flag. Additional flags\ may be used for certain organisms. Repeats are soft-masked. Alignments may\ extend through repeats, but are not permitted to initiate in them.\ See the FAQ for more information.\

    \ \

    Credits

    \ \

    \ Thanks to Arian Smit, Robert Hubley and GIRI for providing the tools and\ repeat libraries used to generate this track.\

    \ \

    References

    \ \

    \ Smit AFA, Hubley R, Green P. RepeatMasker Open-3.0.\ \ http://www.repeatmasker.org. 1996-2010.\

    \ \

    \ Dfam is described in:\

    \

    \ Wheeler TJ, Clements J, Eddy SR, Hubley R, Jones TA, Jurka J, Smit AF, Finn RD.\ \ Dfam: a database of repetitive DNA based on profile hidden Markov models.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D70-82.\ PMID: 23203985; PMC: PMC3531169\

    \ \

    \ Repbase Update is described in:\

    \

    \ Jurka J.\ \ Repbase Update: a database and an electronic journal of repetitive elements.\ Trends Genet. 2000 Sep;16(9):418-420.\ PMID: 10973072\

    \ \

    \ For a discussion of repeats in mammalian genomes, see:\

    \

    \ Smit AF.\ \ Interspersed repeats and other mementos of transposable elements in mammalian genomes.\ Curr Opin Genet Dev. 1999 Dec;9(6):657-63.\ PMID: 10607616\

    \ \

    \ Smit AF.\ \ The origin of interspersed repeats in the human genome.\ Curr Opin Genet Dev. 1996 Dec;6(6):743-8.\ PMID: 8994846\

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Coronary\ parent gtexCov\ shortLabel Artery Coron\ track gtexCovArteryCoronary\ bismap24Neg Bismap S24 - bigBed 6 Single-read mappability with 24-mers after bisulfite conversion (reverse strand) 1 5 240 20 80 247 137 167 0 0 0 map 1 bigDataUrl /gbdb/hg38/hoffmanMappability/k24.G2A-Converted.bb\ color 240,20,80\ longLabel Single-read mappability with 24-mers after bisulfite conversion (reverse strand)\ parent bismapBigBed on\ priority 5\ shortLabel Bismap S24 -\ subGroups view=SR\ track bismap24Neg\ visibility dense\ lincRNAsCTBreast Breast bed 5 + lincRNAs from breast 1 5 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from breast\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Breast\ subGroups view=lincRNAsRefseqExp tissueType=breast\ track lincRNAsCTBreast\ CESC CESC bigLolly 12 + Cervical squamous cell carcinoma and endocervical adenocarcinoma 0 5 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/CESC.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Cervical squamous cell carcinoma and endocervical adenocarcinoma\ parent gdcCancer off\ priority 5\ shortLabel CESC\ track CESC\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ dbVar_common_european dbVar Curated European SVs bigBed 9 + . NCBI dbVar Curated Common SVs: European 3 5 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg38/bbi/dbVar/common_european.bb\ longLabel NCBI dbVar Curated Common SVs: European\ parent dbVar_common on\ shortLabel dbVar Curated European SVs\ track dbVar_common_european\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ geneHancerRegElements GH Reg Elems bigBed 9 + Enhancers and promoters from GeneHancer 1 5 0 0 0 127 127 127 0 0 0 http://www.genecards.org/Search/Keyword?queryString=$$ regulation 1 bigDataUrl /gbdb/hg38/geneHancer/geneHancerRegElementsAll.hg38.bb\ longLabel Enhancers and promoters from GeneHancer\ parent ghGeneHancer off\ shortLabel GH Reg Elems\ subGroups set=b_ALL view=a_GH\ track geneHancerRegElements\ chainHprcGCA_018467015v1 HG02486.mat chain GCA_018467015.1 HG02486.mat HG02486.pri.mat.f1_v2 (May 2021 GCA_018467015.1_HG02486.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 5 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02486.mat HG02486.pri.mat.f1_v2 (May 2021 GCA_018467015.1_HG02486.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018467015.1\ parent hprcChainNetViewchain off\ priority 22\ shortLabel HG02486.mat\ subGroups view=chain sample=s022 population=afr subpop=acb hap=mat\ track chainHprcGCA_018467015v1\ type chain GCA_018467015.1\ hr_na10835Vcf HR_NA10835 Variants vcfTabix HR_NA10835 Variants 0 5 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/problematic/highRepro/HR_NA10835.sort.vcf.gz\ longLabel HR_NA10835 Variants\ parent highReproVcfs\ shortLabel HR_NA10835 Variants\ subGroups view=vcfs\ track hr_na10835Vcf\ type vcfTabix\ wgEncodeRegTxnCaltechRnaSeqHsmmR2x75Il200SigPooled HSMM bigWig 0 65535 Transcription of HSMM cells from ENCODE 0 5 128 255 242 191 255 248 0 0 0 regulation 1 color 128,255,242\ longLabel Transcription of HSMM cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegTxn\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 5\ shortLabel HSMM\ track wgEncodeRegTxnCaltechRnaSeqHsmmR2x75Il200SigPooled\ type bigWig 0 65535\ snpArrayIllumina850k Illumina 850k bigBed 6 Illumina 850k EPIC Methylation Array 3 5 0 0 0 127 127 127 0 0 0

    Description

    \

    Agilent Arrays

    \

    \ The arrays listed in this track are probes from the\ Agilent Catalog Oligonucleotide Microarrays.\

    \

    Please note that more microarray tracks are available on the hg19 genome assembly. \ To view those tracks, please \ click this link for hg19 microarrays.\ Microarrays that are not listed can be added as Custom Tracks with data from the companies.\

    \

    \ Agilent GenetiSure Cyto\

    \

    \ Agilent's oligonucleotide CGH (Comparative Genomic Hybridization) platform enables the\ study of genome-wide DNA copy number changes at a high resolution. The CGH probes on Agilent\ CGH microarrays are 60-mer oligonucleotides synthesized in situ using Agilent's inkjet\ SurePrint technology. The probes represented on the Agilent CGH microarrays have been\ selected using algorithms developed specifically for the CGH application, assuring optimal\ performance of these probes in detecting DNA copy number changes.\

    \ \

    Illumina 450k and 850k Methylation Arrays

    \

    \ With the Infinium MethylationEPIC BeadChip Kit, researchers can interrogate over 850,000\ methylation sites quantitatively across the genome at single-nucleotide resolution. Multiple\ samples, including FFPE, can be analyzed in parallel to deliver high-throughput power while\ minimizing the cost per sample. These tracks show positions being measured on the Illumina 450k and\ 850k (EPIC) microarray tracks. More information about the arrays can be found on the\ Infinium MethylationEPIC Kit website.\ \

    Illumina CytoSNP 850K Probe Array

    \

    \ The Infinium CytoSNP-850K v1.2 BeadChip provides comprehensive coverage of\ cytogenetically relevant genes on a proven platform, helping researchers find valuable information\ that may be missed by other technologies. It contains approximately 850,000 empirically selected\ single nucleotide polymorphisms (SNPs) spanning the entire genome with enriched coverage for 3,262\ genes of known cytogenetics relevance in both constitutional and cancer applications. \

    \ \

    Affymetrix Cytoscan HD GeneChip Array

    \

    \ The CytoScan HD Array, which is included in the\ CytoScan HD Suite, provides the broadest coverage and highest performance for\ detecting chromosomal aberrations. CytoScan HD Suite has greater than 99% sensitivity and can\ reliably detect 25-50kb copy number changes across the genome at high specificity with\ single-nucleotide polymorphism (SNP) allelic corroboration. With more than 2.6 million copy number\ markers, CytoScan HD Suite covers all OMIM and RefSeq genes.\

    \ \ \ \

    Display Conventions and Configuration

    \ \

    \ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

    \ \ \

    Methods

    \

    \ The Agilent arrays were downloaded from their \ Agilent SureDesign website tool on March 2022.

    \

    \ The Illumina 450k and 850k (EPIC) tracks were created using a few columns from the\ Infinium MethylationEPIC v1.0 B5 Manifest File (CSV Format)\ and was then converted into a bigBed.

    \

    \ The Illumina CytoSNP-850K track was created by downloading the\ CytoSNP-850K v1.2 Manifest File (CSV Format) (GRCh38) file and then converted\ into a bigBed file.\

    \

    \ The Affymetrix Cytoscan HD GeneChip Array track was created by converting the \ CytoScanHD_Accel_Array.na36.bed.zip\ into a bigBed file.\

    \ \

    Data Access

    \

    \ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated analysis, the data may be queried from our\ REST API \ or downloaded from our \ Downloads site. Please refer to our\ \ mailing list archives for questions, or our\ \ Data Access FAQ for more information.\

    \ \

    Credits

    \

    \ Thanks to the Aliglent and Illumina support teams for sharing the data and the UCSC Genome Browser\ engineers for configuring the data.

    \ varRep 1 bigDataUrl /gbdb/hg38/bbi/illumina/epic850K.bb\ colorByStrand 255,0,0 0,0,255\ html genotypeArrays\ longLabel Illumina 850k EPIC Methylation Array\ noScoreFilter on\ parent genotypeArrays on\ priority 5\ shortLabel Illumina 850k\ track snpArrayIllumina850k\ type bigBed 6\ urls refGeneAccession="https://www.ncbi.nlm.nih.gov/nuccore/$$" rsID="https://www.ncbi.nlm.nih.gov/snp/?term=$$"\ visibility pack\ wgEncodeRegMarkH3k4me1K562 K562 bigWig 0 5716 H3K4Me1 Mark (Often Found Near Regulatory Elements) on K562 Cells from ENCODE 0 5 128 128 255 191 191 255 0 0 0 regulation 1 color 128,128,255\ longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on K562 Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k4me1\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel K562\ table wgEncodeBroadHistoneK562H3k4me1StdSig\ track wgEncodeRegMarkH3k4me1K562\ type bigWig 0 5716\ wgEncodeRegMarkH3k4me3K562 K562 bigWig 0 9918 H3K4Me3 Mark (Often Found Near Promoters) on K562 Cells from ENCODE 0 5 128 128 255 191 191 255 0 0 0 regulation 1 color 128,128,255\ longLabel H3K4Me3 Mark (Often Found Near Promoters) on K562 Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k4me3\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel K562\ table wgEncodeBroadHistoneK562H3k4me3StdSig\ track wgEncodeRegMarkH3k4me3K562\ type bigWig 0 9918\ wgEncodeRegMarkH3k27acK562 K562 bigWig 0 6249 H3K27Ac Mark (Often Found Near Regulatory Elements) on K562 Cells from ENCODE 2 5 128 128 255 191 191 255 0 0 0 regulation 1 color 128,128,255\ longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on K562 Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k27ac\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel K562\ table wgEncodeBroadHistoneK562H3k27acStdSig\ track wgEncodeRegMarkH3k27acK562\ type bigWig 0 6249\ KAPA_HyperExome_hg38_capture_targets KAPA Hyper P bigBed Roche - KAPA HyperExome Capture Probe Footprint 0 5 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/KAPA_HyperExome_hg38_capture_targets.bb\ color 100,143,255\ longLabel Roche - KAPA HyperExome Capture Probe Footprint\ parent exomeProbesets off\ shortLabel KAPA Hyper P\ track KAPA_HyperExome_hg38_capture_targets\ type bigBed\ dbSnp153BadCoords Map Err dbSnp(153) bigBed 4 Mappings with Inconsistent Coordinates from dbSNP 153 1 5 100 100 100 177 177 177 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg38/snp/dbSnp153BadCoords.bb\ color 100,100,100\ longLabel Mappings with Inconsistent Coordinates from dbSNP 153\ parent dbSnp153ViewErrs off\ priority 5\ shortLabel Map Err dbSnp(153)\ subGroups view=errs\ track dbSnp153BadCoords\ type bigBed 4\ dbSnp155BadCoords Map Err dbSnp(155) bigBed 4 Mappings with Inconsistent Coordinates from dbSNP 155 1 5 100 100 100 177 177 177 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg38/snp/dbSnp155BadCoords.bb\ color 100,100,100\ longLabel Mappings with Inconsistent Coordinates from dbSNP 155\ parent dbSnp155ViewErrs off\ priority 5\ shortLabel Map Err dbSnp(155)\ subGroups view=errs\ track dbSnp155BadCoords\ type bigBed 4\ multiz470way Multiz 470-way bigMaf Multiz Alignments of 470 mammals 3 5 0 10 100 0 90 10 0 0 0 compGeno 1 altColor 0,90,10\ bigDataUrl https://hgdownload.soe.ucsc.edu/goldenPath/hg38/multiz470way/multiz470way.bigMaf\ color 0, 10, 100\ frames https://hgdownload.soe.ucsc.edu/goldenPath/hg38/multiz470way/multiz470wayFrames.bb\ group compGeno\ irows on\ itemFirstCharCase noChange\ longLabel Multiz Alignments of 470 mammals\ noInherit on\ parent cons470wayViewalign on\ priority 5\ sGroup_Afrotheria triMan1 HLloxAfr4 HLeleMax1 HLdugDug1 oryAfe1 HLproCap3 HLhetBru1 chrAsi1 echTel2 HLhydGig1 eleEdw1 HLmicTal1\ sGroup_Artiodactyla HLbalMus1 HLeubGla1 HLbalEde1 balAcu1 HLeubJap1 HLmegNov1 HLmonMon1 HLphoSin1 HLlagObl1 HLgloMel1 HLpepEle1 HLbalMys1 HLneoAsi1 HLplaMin1 HLbalPhy1 HLmesBid1 HLkogBre1 HLlniGeo1 HLlamGuaCac1 HLvicVicMen1 HLvicPacHua3 HLlamGlaCha1 HLponBla1 HLzipCav1 HLlamGla1 HLcerHanYar1 HLmunMun1 HLbosGau1 HLaxiPor1 HLranTarGra2 HLranTar1 HLoviOri1 HLgirCam1 HLsynCaf1 HLoryDam1 HLcapSib1 HLmunRee1 HLcatWag1 HLhipEqu1 HLhipNig1 HLcapPyg1 HLhydIne1 HLodoVir1 HLprzAlb1 HLgirCam2 HLhemHyl1 HLmosMos1 HLbeaHun1 HLalcAlc1 HLoviNivLyd1 HLconTau2 HLdamLun1 HLodoHem1 HLoryGaz1 HLkobLecLec1 HLantAme1 HLbosFro1 HLeudTho1 HLkobEll1 HLlitWal1 HLoreAme1 HLbosGru1 bisBis1 HLmosBer1 HLcepHar1 HLaepMel1 HLantMar1 HLoviCan1 HLoreOre1 HLmunCri1 HLproPrz1 HLmadKir1 HLsylGri1 HLtraJav1 HLredRed1 HLsaiTat1 HLtraScr1 HLcerEla1 HLneoMos1 HLnanGra1 HLtraImb1 HLneoPyg1 HLphiMax1 HLrapCam1 HLtraKan1 HLmosChr1 HLcapIbe1\ sGroup_Carnivore HLphoVit1 HLzalCal1 HLodoRos1 HLursArc1 HLeumJub1 odoRosDiv1 neoSch1 HLcalUrs1 HLmirLeo1 HLursThi1 HLeriBar1 HLhalGry1 HLmirAng2 ursMar1 HLursAme2 HLailMel2 felCat9 HLneoNeb1 HLaciJub2 HLpanPar1 HLpanLeo1 HLursAme1 HLlynCan1 HLpumYag1 lepWed1 panTig1 HLpanOnc1 HLpanOnc2 HLarcGaz2 HLcryFer2 canFam4 HLlynPar1 HLpriBen1 enhLutKen1 canFam5 HLailFul2 HLcanLupDin1 HLlonCan1 HLlutLut1 HLvulVul1 HLpumCon1 HLmusErm1 HLpotFla1 HLpteBra2 HLlycPic3 HLhyaHya1 enhLutNer1 HLpteBra1 HLfelNig1 HLmelCap1 HLmusFur2 HLmarZib1 HLvulLag1 HLmusPut1 HLcroCro1 HLparHer1 HLgulGul1 HLneoVis1 HLsurSur1 HLmunMug1 HLbasSum1 HLspiGra1 HLhelPar1 HLsurSur2 HLtaxTax1 HLnasNar1 HLproLot1 HLlycPic2\ sGroup_Cetartiodactyla HLescRob1 HLphyCat2 HLhipAmp3 HLdelLeu2 HLturTru4 phyCat1 HLturAdu2 orcOrc1 HLsouChi1 lipVex1 HLturAdu1 HLbalBon1 HLphoPho1 HLphoPho2 HLturTru3 turTru2 HLcamDro2 HLhipAmp1 HLcamFer3 HLcamBac1 vicPac2 susScr11 bosTau9 HLbubBub2 HLodoVir3 HLelaDav1 HLbosInd2 HLoviAri5 HLcapHir2 HLodoVir2 HLbosMut2 HLcapAeg1 HLammLer1 panHod1 HLgirTip1 HLoviCan2 HLokaJoh2 HLtraStr1 HLoviAmm1\ sGroup_Chiroptera HLrhiFer5 HLrhiSin1 HLptePse1 HLpteGig1 pteAle1 HLpteRuf1 HLhipGal1 HLrouAeg4 HLpteVam2 HLrouLes1 HLhipArm1 HLeonSpe1 HLeidDup1 HLmacSob1 HLeidHel2 HLtadBra1 HLrouMad1 HLdesRot2 HLmolMol2 HLphyDis3 HLlepYer1 HLmorBla1 HLmegLyr2 HLtonSau1 HLanoCau1 HLcarPer3 HLartJam2 HLminNat1 ptePar1 HLartJam1 HLminSch1 HLmacCal1 HLstuHon1 HLcynBra1 HLmyoMyo6 HLmicHir1 HLcraTho1 HLmyoSep1 myoBra1 eptFus1 HLmyoLuc1 myoLuc2 HLnocLep1 myoDav1 HLmurAurFea1 HLnycHum2 HLantPal1 HLaeoCin1 HLlasBor1 HLpipKuh2 HLpipPip2 HLpipPip1\ sGroup_Euarchontoglires HLgalVar2 tupChi1 tupBel1\ sGroup_Glires HLsciCar1 HLsciVul1 HLmarMon2 HLmarFla1 HLxerIna1 HLmarMar1 HLcynGun1 HLmarMon1 HLmarHim1 HLspeDau1 HLmarVan1 HLuroPar1 speTri2 HLereDor1 HLaplRuf1 HLpedCap1 HLgliGli1 hetGla2 HLhysCri1 HLcoePre1 chiLan1 HLdasPun1 HLcasCan3 HLoryCunCun4 HLgraMur1 HLdinBra1 HLfukDam2 oryCun2 HLlepAme1 HLhydHyd1 HLsylBac1 HLcavTsc1 HLdolPat1 cavPor3 HLmusAve1 HLoryCun3 HLlepTim1 octDeg1 HLcteGun1 HLcteSoc1 HLpetTyp1 nanGal1 HLthrSwi1 HLmyoCoy1 HLperCal2 HLperCri1 HLperManBai2 HLperPol1 HLperNas1 HLperLeu1 HLperEre1 HLrhiPru1 HLonyTor1 HLallBul1 jacJac1 HLcriGam1 HLcriGri3 HLondZib1 ochPri3 HLgraSur1 HLarvAmp1 HLarvNil1 HLellTal1 mm10 mm39 HLdipSte1 dipOrd2 HLacoRus1 HLmasCou1 HLzapHud1 HLmicAgr2 HLpsaObe1 HLmusSpr1 HLmyoGla2 HLmusCar1 micOch1 HLratNor7 HLellLut1 HLmusPah1 HLrhoOpi1 HLacoCah1 rn6 HLmusSpi1 HLmicFor1 HLmicArv1 HLmicOec1 HLsigHis1 HLratRat7 HLneoLep1 mesAur1 HLmerUng1 HLperLonPac1 cavApe1 HLapoSyl1\ sGroup_Laurasiatheria HLdicBic1 cerSim1 HLrhiUni1 HLdicSum1 HLtapInd1 HLtapTer1 HLtapInd2 equCab3 HLcerSimCot1 HLequAsi1 HLequQuaBoe1 HLequAsiAsi2 equPrz1 HLmanPen2 HLphaTri2 HLmanJav1 HLmanJav2 HLmanTri1 manPen1 HLsolPar1 HLtalOcc1 HLscaAqu1 HLuroGra1 conCri1 sorAra2 eriEur2\ sGroup_Metatheria HLvomUrs1 HLphaCin1 HLtriVul1 HLgymLea1 HLmacGig1 HLphaGym1 HLnotEug3 HLantFla1 HLmacFul1 HLsarHar2 HLpseCup1 monDom5 HLgraAgi1 HLospRuf1 HLdidVir1 HLpseCor1 HLpseOcc1 HLthyCyn1 macEug2\ sGroup_Monotremata HLornAna3 HLtacAcu1\ sGroup_Primates panTro6 panPan3 gorGor6 ponAbe3 HLnomLeu4 HLhylMol2 rheMac10 HLmacFas6 HLtheGel1 HLmacFus1 HLrhiRox2 chlSab2 HLpapAnu5 cerAty1 HLmanSph1 macNem1 HLtraFra1 HLpygNem1 HLpilTep2 HLeryPat1 HLallNig1 rhiBie1 HLcerMon1 manLeu1 HLsemEnt1 colAng1 HLcerNeg1 HLpitPit1 HLateGeo1 HLsapApe1 HLaloPal1 HLpleDon1 cebCap1 HLcalJac4 aotNan1 HLsagImp1 HLcalPym1 HLcebAlb1 nasLar1 HLsaiBol1 saiBol1 HLdauMad1 tarSyr2 HLindInd1 HLmirZaz1 eulMac1 micMur3 HLproSim1 HLeulFla1 HLmirCoq1 HLlemCat1 HLcheMed1 HLmicSpe31 HLeulFul1 eulFla1 HLmicTav1 HLeulMon1 proCoq1 HLnycCou1 otoGar3\ sGroup_Xenarthra HLchoDid2 HLchoHof3 HLchoDid1 HLtamTet1 HLmyrTri1 dasNov3 HLtolMat1\ shortLabel Multiz 470-way\ speciesCodonDefault hg38\ speciesDefaultOff panPan3 gorGor6 ponAbe3 HLnomLeu4 HLhylMol2 macNem1 HLtheGel1 HLmacFas6 HLcerMon1 HLpilTep2 colAng1 manLeu1 cerAty1 HLpapAnu5 HLmanSph1 HLsemEnt1 HLmacFus1 HLtraFra1 rhiBie1 HLrhiRox2 HLpygNem1 HLcerNeg1 nasLar1 HLallNig1 chlSab2 HLeryPat1 HLpitPit1 HLateGeo1 aotNan1 HLpleDon1 HLaloPal1 HLsaiBol1 HLsagImp1 saiBol1 HLcalJac4 HLcalPym1 HLsapApe1 cebCap1 HLcebAlb1 HLdauMad1 proCoq1 HLgalVar2 HLindInd1 HLeulFul1 eulFla1 HLlemCat1 HLproSim1 HLeulMon1 HLeulFla1 HLcheMed1 eulMac1 tarSyr2 micMur3 HLmirZaz1 HLmirCoq1 HLmicSpe31 HLmicTav1 HLnycCou1 otoGar3 HLtapTer1 HLrhiUni1 HLtapInd1 HLtapInd2 HLdicBic1 HLdicSum1 HLcerSimCot1 cerSim1 HLequQuaBoe1 equPrz1 HLequAsi1 HLequAsiAsi2 HLeubGla1 HLsciCar1 HLeubJap1 HLsciVul1 balAcu1 HLbalBon1 HLxerIna1 HLmegNov1 HLbalPhy1 HLbalMys1 tupChi1 HLbalEde1 HLaplRuf1 HLescRob1 HLmarFla1 phyCat1 HLphyCat2 HLmarMar1 HLmesBid1 HLchoHof3 HLchoDid2 HLmarVan1 HLplaMin1 HLmarHim1 HLspeDau1 HLmarMon1 HLmarMon2 HLzipCav1 HLuroPar1 lipVex1 HLdelLeu2 HLlniGeo1 HLcynGun1 HLmonMon1 HLhipAmp3 HLhipAmp1 speTri2 HLneoAsi1 HLpumCon1 panTig1 HLkogBre1 HLneoNeb1 HLpanPar1 HLphoSin1 HLeriBar1 HLmanTri1 HLgliGli1 HLdugDug1 HLphaTri2 HLpanOnc1 HLphoVit1 HLaciJub2 HLhalGry1 HLchoDid1 HLpedCap1 HLphoPho2 HLphoPho1 neoSch1 lepWed1 HLpanOnc2 HLponBla1 HLpriBen1 HLcamFer3 orcOrc1 HLmanPen2 HLcasCan3 HLursThi1 HLrhiSin1 HLlynPar1 HLmirLeo1 HLlynCan1 HLmirAng2 HLpanLeo1 HLcamBac1 HLsouChi1 manPen1 HLodoRos1 HLcalUrs1 odoRosDiv1 HLvicPacHua3 HLhipArm1 HLlamGla1 HLailMel2 HLzalCal1 HLeumJub1 felCat9 HLpumYag1 pteAle1 HLursArc1 ursMar1 HLpepEle1 HLgloMel1 HLrhiFer5 HLarcGaz2 HLcamDro2 HLlagObl1 HLptePse1 HLmanJav1 HLmanJav2 vicPac2 HLvicVicMen1 HLlamGuaCac1 HLlamGlaCha1 HLturTru4 HLturAdu1 HLturAdu2 HLursAme1 HLursAme2 triMan1 HLtadBra1 HLpteVam2 turTru2 HLpteRuf1 HLpteGig1 HLturTru3 HLfelNig1 HLeidDup1 HLeidHel2 HLeleMax1 HLhipGal1 HLloxAfr4 tupBel1 HLcynBra1 HLeonSpe1 HLcryFer2 HLgraMur1 HLmyrTri1 oryAfe1 HLrouLes1 HLrouAeg4 HLrouMad1 HLvulVul1 HLvulLag1 HLlycPic3 HLtamTet1 HLcanLupDin1 canFam5 HLpotFla1 HLhydGig1 HLmegLyr2 HLlycPic2 HLailFul2 HLmolMol2 HLcroCro1 HLmacSob1 HLhyaHya1 HLlepTim1 susScr11 HLminSch1 HLparHer1 HLminNat1 HLlepAme1 HLcraTho1 HLcatWag1 HLmorBla1 HLoryCunCun4 ptePar1 oryCun2 HLoryCun3 HLsylBac1 HLnasNar1 HLhysCri1 HLereDor1 HLcoePre1 HLmarZib1 HLgulGul1 HLproLot1 HLbasSum1 HLspiGra1 HLtaxTax1 HLmelCap1 HLmusAve1 HLsurSur2 HLsurSur1 HLmunMug1 HLhelPar1 HLscaAqu1 HLlonCan1 HLpteBra2 HLpteBra1 enhLutNer1 enhLutKen1 HLlutLut1 HLmyoMyo6 hetGla2 myoBra1 HLdesRot2 HLtalOcc1 HLgirCam1 HLokaJoh2 HLmacCal1 HLmusErm1 HLmyoSep1 HLneoVis1 HLgirCam2 HLgirTip1 HLmyoLuc1 myoLuc2 HLmusPut1 HLmusFur2 HLlepYer1 myoDav1 HLsynCaf1 HLbubBub2 HLmosBer1 HLmosMos1 HLmosChr1 HLcerHanYar1 HLmicHir1 HLbosInd2 chrAsi1 HLbosGau1 HLanoCau1 HLbosFro1 HLbosMut2 HLprzAlb1 HLmurAurFea1 HLnocLep1 HLhipEqu1 HLcepHar1 HLhipNig1 HLbosGru1 HLoryDam1 HLsylGri1 HLphiMax1 HLoryGaz1 HLtraStr1 HLantAme1 HLmunRee1 HLmunCri1 HLcerEla1 HLtraImb1 HLconTau2 HLtraScr1 HLkobEll1 HLmunMun1 HLammLer1 HLdamLun1 HLoviCan1 HLkobLecLec1 HLcapPyg1 HLcapHir2 HLcapAeg1 panHod1 HLalcAlc1 HLbeaHun1 HLaepMel1 HLodoHem1 HLredRed1 HLfukDam2 HLcapSib1 HLodoVir3 HLranTarGra2 HLranTar1 HLoreOre1 HLhydIne1 HLoviCan2 HLoviNivLyd1 HLneoMos1 HLodoVir2 HLodoVir1 HLhemHyl1 HLoviOri1 HLoviAri5 HLneoPyg1 nanGal1 HLnanGra1 HLproPrz1 HLrapCam1 HLeudTho1 HLantMar1 chiLan1 HLdasPun1 HLcteGun1 HLlitWal1 HLmadKir1 HLcarPer3 HLaxiPor1 HLphyDis3 HLtonSau1 HLtraJav1 HLartJam1 HLartJam2 HLhetBru1 HLuroGra1 HLtraKan1 conCri1 HLstuHon1 HLoreAme1 HLallBul1 HLelaDav1 HLsaiTat1 HLaeoCin1 HLdipSte1 dipOrd2 HLtolMat1 HLantPal1 HLrhiPru1 HLnycHum2 HLoviAmm1 HLcapIbe1 HLdinBra1 jacJac1 HLzapHud1 HLdolPat1 HLlasBor1 HLpipKuh2 HLperLonPac1 HLhydHyd1 HLpipPip1 HLpipPip2 ochPri3 eleEdw1 cavApe1 HLpetTyp1 HLcavTsc1 cavPor3 HLthrSwi1 octDeg1 HLcriGam1 HLneoLep1 HLcteSoc1 HLmyoCoy1 echTel2 eriEur2 HLperNas1 HLcriGri3 HLperCri1 HLondZib1 HLperCal2 HLperEre1 HLonyTor1 mesAur1 HLperLeu1 HLellTal1 HLperPol1 HLperManBai2 HLsigHis1 HLellLut1 HLmyoGla2 HLarvAmp1 HLpsaObe1 HLacoRus1 HLgraSur1 HLarvNil1 HLmicOec1 HLmicTal1 HLmicAgr2 HLmicFor1 HLacoCah1 HLmicArv1 micOch1 HLrhoOpi1 HLmasCou1 HLmerUng1 HLratRat7 HLratNor7 rn6 HLmusPah1 HLmusCar1 HLmusSpi1 mm10 HLmusSpr1 HLapoSyl1 sorAra2 HLvomUrs1 HLphaCin1 HLgraAgi1 HLtriVul1 HLdidVir1 HLphaGym1 monDom5 HLgymLea1 HLthyCyn1 HLpseCup1 HLmacGig1 HLpseCor1 HLmacFul1 HLnotEug3 HLospRuf1 HLpseOcc1 macEug2 HLantFla1 HLornAna3 HLtacAcu1\ speciesDefaultOn panTro6 rheMac10 canFam4 equCab3 HLsolPar1 bosTau9 HLbalMus1 bisBis1 dasNov3 eptFus1 mm39 HLproCap3 HLsarHar2 HLtacAcu1\ speciesGroups Primates Euarchontoglires Carnivore Laurasiatheria Cetartiodactyla Artiodactyla Xenarthra Chiroptera Glires Afrotheria Metatheria Monotremata\ speciesLabels HLnomLeu4="northern white-cheeked gibbon" HLhylMol2="silvery gibbon" HLtheGel1=gelada HLmacFas6="crab-eating macaque" HLcerMon1="Mona monkey" HLpilTep2="Ugandan red Colobus" HLpapAnu5="olive baboon" HLmanSph1=mandrill HLsemEnt1="Hanuman langur" HLmacFus1="Japanese macaque" HLtraFra1="Francois's langur" HLrhiRox2="golden snub-nosed monkey" HLpygNem1="Red shanked douc langur" HLcerNeg1="De Brazza's monkey" HLallNig1="Allen's swamp monkey" HLeryPat1="red guenon" HLpitPit1="white-faced saki" HLateGeo1="black-handed spider monkey" HLpleDon1="Bolivian titi" HLaloPal1="mantled howler monkey" HLsaiBol1="Bolivian squirrel monkey" HLsagImp1=tamarin HLcalJac4="white-tufted-ear marmoset" HLcalPym1="pygmy marmoset" HLsapApe1="tufted capuchin" HLcebAlb1="white-fronted capuchin" HLdauMad1=aye-aye HLgalVar2="Sunda flying lemur" HLindInd1=babakoto HLeulFul1="brown lemur" HLlemCat1="Ring-tailed lemur" HLproSim1="greater bamboo lemur" HLeulMon1="mongoose lemur" HLeulFla1="Sclater's lemur" HLcheMed1="Lesser dwarf lemur" HLmirZaz1="Northern giant mouse lemur" HLmirCoq1="Coquerel's mouse lemur" HLmicSpe31="mouse lemur" HLmicTav1="Northern rufous mouse lemur" HLnycCou1="slow loris" HLtapTer1="Brazilian tapir" HLrhiUni1="greater Indian rhinoceros" HLtapInd1="Asiatic tapir" HLtapInd2="Asiatic tapir" HLdicBic1="black rhinoceros" HLdicSum1="Sumatran rhinoceros" HLcerSimCot1="northern white rhinoceros" HLequQuaBoe1="Equus burchelli boehmi" HLequAsi1=ass HLequAsiAsi2=donkey HLeubGla1="North Atlantic right whale" HLsciCar1="gray squirrel" HLeubJap1="North Pacific right whale" HLsciVul1="Eurasian red squirrel" HLbalBon1="Antarctic minke whale" HLxerIna1="South African ground squirrel" HLmegNov1="humpback whale" HLbalPhy1="Fin whale" HLbalMys1="bowhead whale" HLbalMus1="Blue whale" HLbalEde1="pygmy Bryde's whale" HLaplRuf1="mountain beaver" HLescRob1="grey whale" HLmarFla1="yellow-bellied marmot" HLphyCat2="sperm whale" HLmarMar1="Alpine marmot" HLmesBid1="Sowerby's beaked whale" HLchoHof3="Hoffmann's two-fingered sloth" HLchoDid2="southern two-toed sloth" HLmarVan1="Vancouver Island marmot" HLplaMin1="Indus River dolphin" HLmarHim1="Himalayan marmot" HLspeDau1="Daurian ground squirrel" HLmarMon1=woodchuck HLmarMon2=woodchuck HLzipCav1="Cuvier's beaked whale" HLuroPar1="Arctic ground squirrel" HLdelLeu2="beluga whale" HLlniGeo1=boutu HLcynGun1="Gunnison's prairie dog" HLmonMon1=narwhal HLhipAmp3=hippopotamus HLhipAmp1=hippopotamus HLneoAsi1="Yangtze finless porpoise" HLpumCon1=puma HLkogBre1="pygmy sperm whale" HLneoNeb1="Clouded leopard" HLpanPar1=leopard HLphoSin1=vaquita HLeriBar1="bearded seal" HLmanTri1="Tree pangolin" HLgliGli1="Fat dormouse" HLdugDug1=dugong HLphaTri2="Tree pangolin" HLpanOnc1=jaguar HLphoVit1="harbor seal" HLaciJub2=cheetah HLhalGry1="gray seal" HLchoDid1="southern two-toed sloth" HLpedCap1=springhare HLphoPho2="harbor porpoise" HLphoPho1="harbor porpoise" HLpanOnc2=jaguar HLponBla1=franciscana HLpriBen1="Amur leopard cat" HLcamFer3="Wild Bactrian camel" HLmanPen2="Chinese pangolin" HLcasCan3="American beaver" HLursThi1="Asian black bear" HLrhiSin1="Chinese rufous horseshoe bat" HLlynPar1="Spanish lynx" HLmirLeo1="Southern elephant seal" HLlynCan1="Canada lynx" HLmirAng2="Northern elephant seal" HLpanLeo1=lion HLcamBac1="Bactrian camel" HLsouChi1="Indo-pacific humpbacked dolphin" HLodoRos1=walrus HLcalUrs1="northern fur seal" HLvicPacHua3="Lama pacos huacaya" HLhipArm1="great roundleaf bat" HLlamGla1=llama HLailMel2="giant panda" HLzalCal1="California sea lion" HLeumJub1="Steller sea lion" HLpumYag1=jaguarundi HLursArc1="grizzly bear" HLpepEle1="melon-headed whale" HLgloMel1="long-finned pilot whale" HLrhiFer5="greater horseshoe bat" HLarcGaz2="antarctic fur seal" HLcamDro2="Arabian camel" HLlagObl1="Pacific white-sided dolphin" HLptePse1="Bonin flying fox" HLmanJav1="Malayan pangolin" HLmanJav2="Malayan pangolin" HLvicVicMen1="Vicugna mensalis" HLlamGuaCac1=guanaco HLlamGlaCha1=llama HLturTru4="common bottlenose dolphin" HLturAdu1="Indo-pacific bottlenose dolphin" HLturAdu2="Indo-pacific bottlenose dolphin" HLursAme1="American black bear" HLursAme2="American black bear" HLtadBra1="Brazilian free-tailed bat" HLpteVam2="large flying fox" HLpteRuf1="Malagasy flying fox" HLpteGig1="Indian flying fox" HLturTru3="common bottlenose dolphin" HLfelNig1="black-footed cat" HLeidDup1="Malagasy straw-colored fruit bat" HLeidHel2="straw-colored fruit bat" HLeleMax1="Asiatic elephant" HLhipGal1="Cantor's roundleaf bat" HLloxAfr4="African savanna elephant" HLcynBra1="lesser short-nosed fruit bat" HLeonSpe1="lesser dawn bat" HLcryFer2=fossa HLgraMur1="woodland dormouse" HLmyrTri1="giant anteater" HLrouLes1="Leschenault's rousette" HLrouAeg4="Egyptian rousette" HLrouMad1="Madagascan rousette" HLvulVul1="red fox" HLvulLag1="Arctic fox" HLlycPic3="African hunting dog" HLtamTet1="southern tamandua" HLcanLupDin1=dingo HLpotFla1=kinkajou HLhydGig1="Steller's sea cow" HLmegLyr2="Indian false vampire" HLlycPic2="African hunting dog" HLailFul2="lesser panda" HLmolMol2="Pallas's mastiff bat" HLcroCro1="spotted hyena" HLmacSob1="long-tongued fruit bat" HLhyaHya1="striped hyena" HLlepTim1="Mountain hare" HLminSch1="Schreibers' long-fingered bat" HLparHer1="Asian palm civet" HLminNat1="Miniopterus schreibersii natalensis" HLlepAme1="snowshoe hare" HLcraTho1="hog-nosed bat" HLcatWag1="Chacoan peccary" HLmorBla1="Antillean ghost-faced bat" HLoryCunCun4="European rabbit" HLoryCun3=rabbit HLsylBac1="brush rabbit" HLnasNar1="White-nosed coati" HLhysCri1="crested porcupine" HLereDor1="North American porcupine" HLcoePre1="Brazilian porcupine" HLmarZib1=sable HLsolPar1="Hispaniolan solenodon" HLgulGul1=wolverine HLproLot1=raccoon HLbasSum1=Cacomistle HLspiGra1="western spotted skunk" HLtaxTax1="North American badger" HLmelCap1=ratel HLmusAve1="hazel dormouse" HLsurSur2=meerkat HLsurSur1=meerkat HLmunMug1="banded mongoose" HLhelPar1="dwarf mongoose" HLscaAqu1="eastern mole" HLlonCan1="Northern American river otter" HLpteBra2="giant otter" HLpteBra1="giant otter" HLlutLut1="Eurasian river otter" HLmyoMyo6="greater mouse-eared bat" HLdesRot2="common vampire bat" HLtalOcc1="Iberian mole" HLgirCam1=giraffe HLokaJoh2=okapi HLmacCal1="California big-eared bat" HLmusErm1=ermine HLmyoSep1="Northern long-eared myotis" HLneoVis1="American mink" HLgirCam2=giraffe HLgirTip1="Masai giraffe" HLmyoLuc1="little brown bat" HLmusPut1="European polecat" HLmusFur2="domestic ferret" HLlepYer1="Lesser long-nosed bat" HLsynCaf1="African buffalo" HLbubBub2="water buffalo" HLmosBer1="Chinese forest musk deer" HLmosMos1="Siberian musk deer" HLmosChr1="alpine musk deer" HLcerHanYar1="Yarkand deer" HLmicHir1="Schizostoma hirsutum" HLbosInd2="zebu cattle" HLbosGau1=gaur HLanoCau1="tailed tailless bat" HLbosFro1=gayal HLbosMut2="wild yak" HLprzAlb1="white-lipped deer" HLmurAurFea1="Murina feae" HLnocLep1="greater bulldog bat" HLhipEqu1="roan antelope" HLcepHar1="Harvey's duiker" HLhipNig1="sable antelope" HLbosGru1="domestic yak" HLoryDam1="scimitar-horned oryx" HLsylGri1="bush duiker" HLphiMax1="Maxwell's duiker" HLoryGaz1=gemsbok HLtraStr1="greater kudu" HLantAme1=pronghorn HLmunRee1="Reeves' muntjac" HLmunCri1="black muntjac" HLcerEla1="Central European red deer" HLtraImb1="lesser kudu" HLconTau2="brindled gnu" HLtraScr1=bushbuck HLkobEll1=waterbuck HLmunMun1=muntjak HLammLer1=aoudad HLdamLun1=topi HLoviCan1="bighorn sheep" HLkobLecLec1=lechwe HLcapPyg1="Eastern roe deer" HLcapHir2=goat HLcapAeg1="wild goat" HLalcAlc1="Eurasian elk" HLbeaHun1="Cobus hunteri" HLaepMel1=impala HLodoHem1="mule deer" HLredRed1="Bohar reedbuck" HLfukDam2="Damara mole-rat" HLcapSib1="Siberian ibex" HLodoVir3="white-tailed deer" HLranTarGra2="porcupine caribou" HLranTar1=reindeer HLoreOre1=klipspringer HLhydIne1="Chinese water deer" HLoviCan2="bighorn sheep" HLoviNivLyd1="snow sheep" HLneoMos1=suni HLodoVir2="white-tailed deer" HLodoVir1="white-tailed deer" HLhemHyl1="Nilgiri tahr" HLoviOri1="Asiatic mouflon" HLoviAri5=sheep HLneoPyg1="royal antelope" HLnanGra1="Grant's gazelle" HLproPrz1="Przewalski's gazelle" HLrapCam1=steenbok HLeudTho1="Thomson's gazelle" HLantMar1=springbok HLdasPun1="punctate agouti" HLcteGun1="northern gundi" HLlitWal1=gerenuk HLmadKir1="Kirk's dik-dik" HLcarPer3="Seba's short-tailed bat" HLaxiPor1="Hog deer" HLphyDis3="pale spear-nosed bat" HLtonSau1="stripe-headed round-eared bat" HLtraJav1="Java mouse-deer" HLartJam1="Jamaican fruit-eating bat" HLartJam2="Jamaican fruit-eating bat" HLhetBru1="yellow-spotted hyrax" HLproCap3="Cape rock hyrax" HLuroGra1="gracile shrew mole" HLtraKan1="lesser mouse-deer" HLstuHon1="Honduran yellow-shouldered bat" HLoreAme1="mountain goat" HLallBul1="Gobi jerboa" HLelaDav1="Pere David's deer" HLsaiTat1="saiga antelope" HLaeoCin1="hoary bat" HLdipSte1="Stephens's kangaroo rat" HLtolMat1="Southern three-banded armadillo" HLantPal1="pallid bat" HLrhiPru1="hoary bamboo rat" HLnycHum2="evening bat" HLoviAmm1=argali HLcapIbe1="Alpine ibex" HLdinBra1=pacarana HLzapHud1="meadow jumping mouse" HLdolPat1="Patagonian cavy" HLlasBor1="red bat" HLpipKuh2="Kuhl's pipistrelle" HLperLonPac1="Pacific pocket mouse" HLhydHyd1=capybara HLpipPip1="common pipistrelle" HLpipPip2="common pipistrelle" HLpetTyp1=dassie-rat HLcavTsc1="Montane guinea pig" HLthrSwi1="Greater cane rat" HLcriGam1="Gambian giant pouched rat" HLneoLep1="desert woodrat" HLcteSoc1="social tuco-tuco" HLmyoCoy1=nutria HLperNas1="northern rock mouse" HLcriGri3="Chinese hamster" HLperCri1="Hesperomys crinitus" HLondZib1=muskrat HLperCal2="Peromyscus californicus subsp. insignis" HLperEre1="cactus mouse" HLonyTor1="southern grasshopper mouse" HLperLeu1="white-footed mouse" HLellTal1="Northern mole vole" HLperPol1="oldfield mouse" HLperManBai2="prairie deer mouse" HLsigHis1="hispid cotton rat" HLellLut1="Transcaucasian mole vole" HLmyoGla2="Bank vole" HLarvAmp1="Eurasian water vole" HLpsaObe1="fat sand rat" HLacoRus1="golden spiny mouse" HLgraSur1="African woodland thicket rat" HLarvNil1="African grass rat" HLmicOec1="root vole" HLmicTal1="Talazac's shrew tenrec" HLmicAgr2="short-tailed field vole" HLmicFor1="reed vole" HLacoCah1="Egyptian spiny mouse" HLmicArv1="Common vole" HLrhoOpi1="great gerbil" HLmasCou1="southern multimammate mouse" HLmerUng1="Mongolian gerbil" HLratRat7="black rat" HLratNor7="Norway rat" HLmusPah1="shrew mouse" HLmusCar1="Ryukyu mouse" HLmusSpi1="steppe mouse" HLmusSpr1="western wild mouse" HLapoSyl1="European woodmouse" HLvomUrs1="common wombat" HLphaCin1=koala HLgraAgi1="Agile Gracile Mouse Opossum" HLtriVul1="common brushtail" HLdidVir1="North American opossum" HLphaGym1="ground cuscus" HLgymLea1="Leadbeater's possum" HLthyCyn1="Tasmanian wolf" HLpseCup1="coppery ringtail possum" HLmacGig1="eastern gray kangaroo" HLpseCor1="golden ringtail possum" HLmacFul1="western gray kangaroo" HLnotEug3="tammar wallaby" HLospRuf1="red kangaroo" HLpseOcc1="Western ringtail oppossum" HLantFla1="yellow-footed antechinus" HLsarHar2="Tasmanian devil" HLornAna3=platypus HLtacAcu1="Australian echidna"\ subGroups view=align\ summary https://hgdownload.soe.ucsc.edu/goldenPath/hg38/multiz470way/multiz470waySummary.bb\ track multiz470way\ treeImage phylo/hg38_470way.png\ type bigMaf\ viewUi on\ wgEncodeGencodePolyaV20 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 20 (Ensembl 76) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 20 (Ensembl 76)\ parent wgEncodeGencodeV20ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV20\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV22 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 22 (Ensembl 79) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 22 (Ensembl 79)\ parent wgEncodeGencodeV22ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV22\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV23 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 23 (Ensembl 81) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 23 (Ensembl 81)\ parent wgEncodeGencodeV23ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV23\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV24 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 24 (Ensembl 83) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 24 (Ensembl 83)\ parent wgEncodeGencodeV24ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV24\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV25 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 25 (Ensembl 85) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 25 (Ensembl 85)\ parent wgEncodeGencodeV25ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV25\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV26 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 26 (Ensembl 88) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 26 (Ensembl 88)\ parent wgEncodeGencodeV26ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV26\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV27 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 27 (Ensembl 90) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 27 (Ensembl 90)\ parent wgEncodeGencodeV27ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV27\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV28 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 28 (Ensembl 92) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 28 (Ensembl 92)\ parent wgEncodeGencodeV28ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV28\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV29 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 29 (Ensembl 94) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 29 (Ensembl 94)\ parent wgEncodeGencodeV29ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV29\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV30 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 30 (Ensembl 96) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 30 (Ensembl 96)\ parent wgEncodeGencodeV30ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV30\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV31 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 31 (Ensembl 97) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 31 (Ensembl 97)\ parent wgEncodeGencodeV31ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV31\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV32 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 32 (Ensembl 98) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 32 (Ensembl 98)\ parent wgEncodeGencodeV32ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV32\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV33 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 33 (Ensembl 99) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 33 (Ensembl 99)\ parent wgEncodeGencodeV33ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV33\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV34 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 34 (Ensembl 100) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 34 (Ensembl 100)\ parent wgEncodeGencodeV34ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV34\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV35 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 35 (Ensembl 101) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 35 (Ensembl 101)\ parent wgEncodeGencodeV35ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV35\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV36 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 36 (Ensembl 102) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 36 (Ensembl 102)\ parent wgEncodeGencodeV36ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV36\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV37 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 37 (Ensembl 103) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 37 (Ensembl 103)\ parent wgEncodeGencodeV37ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV38 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 38 (Ensembl 104) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 38 (Ensembl 104)\ parent wgEncodeGencodeV38ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV38\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV39 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 39 (Ensembl 105) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 39 (Ensembl 105)\ parent wgEncodeGencodeV39ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV39\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV40 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 40 (Ensembl 106) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 40 (Ensembl 106)\ parent wgEncodeGencodeV40ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV40\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV41 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 41 (Ensembl 107) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 41 (Ensembl 107)\ parent wgEncodeGencodeV41ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV41\ trackHandler wgEncodeGencode\ type genePred\ recombDnm Recomb. deCODE Dmn bigBed 4 + Recombination rate: De-novo mutations found in deCODE samples 0 5 0 130 0 127 192 127 0 0 0

    Description

    \

    \ The recombination rate track represents calculated rates of recombination based\ on the genetic maps from deCODE (Halldorsson et al., 2019) and 1000 Genomes\ (2013 Phase 3 release, lifted from hg19). The deCODE map is more recent, has a higher \ resolution and was natively created on hg38 and therefore recommended. \ For the Recomb. deCODE average track, the recombination rates for chrX represent the female rate.\

    \ \

    This track also includes a subtrack with all the\ individual deCODE recombination events and another subtrack with several thousand\ de-novo mutations found in the deCODE sequencing data. These two tracks are hidden by\ default and have to be switched on explicitly on the configuration page.\

    \ \

    Display Conventions and Configuration

    \

    \ This is a super track that contains different subtracks, three with the deCODE\ recombination rates (paternal, maternal and average) and one with the 1000\ Genomes recombination rate (average). These tracks are in \ signal graph\ (wiggle) format. By default, to show most recombination hotspots, their maximum\ value is set to 100 cM, even though many regions have values higher than 100.\ The maximum value can be changed on the configuration pages of the tracks.\

    \ \

    \ There are two more tracks that show additional details provided by deCODE: one\ subtrack with the raw data of all cross-overs tagged with their proband ID and\ another one with around 8000 human de-novo mutation variants that are linked to\ cross-over changes.\

    \ \

    Methods

    \

    \ The deCODE genetic map was created at \ deCODE Genetics. It is based \ on microarrays assaying 626,828 SNP markers that allowed to identify 1,476,140 crossovers in\ 56,321 paternal meioses and 3,055,395 crossovers in 70,086 maternal meioses.\ In total, the data is based on 4,531,535 crossovers in 126,427 meioses. By\ using WGS data with 9,305,070 SNPs, the boundaries for 761,981 crossovers were\ refined: 247,942 crossovers in 9423 paternal meioses and 514,039 crossovers in\ 11,750 maternal meioses. The average resolution of the genetic map is 682 base\ pairs (bp): 655 and 708 bp for the paternal and maternal maps, respectively.\

    \ \

    The 1000 Genomes genetic map is based on the IMPUTE genetic map based on 1000 Genomes Phase 3, on hg19 coordinates. It\ was converted to hg38 by Po-Ru Loh at the Broad Institute. After a run of \ liftOver, he post-processed the data to deal with situations in which\ consecutive map locations became much closer/farther after lifting. The\ heuristic used is sufficient for statistical phasing but may not be optimal for\ other analyses. For this reason, and because of its higher resolution, the DeCODE\ map is therefore recommended for hg38.\

    \ \

    As with all other tracks, the data conversion commands and pointers to the\ original data files are documented in the \ makeDoc file of this track.

    \ \

    Data Access

    \

    \ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\

    \ \

    \ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

    \ bigWigToBedGraph -chrom=chr17 -start=45941345 -end=45942345 http://hgdownload.soe.ucsc.edu/gbdb/hg38/recombRate/recombAvg.bw stdout\
    \

    \ \

    \ Please refer to our\ Data Access FAQ\ for more information.\

    \ \

    Credits

    \

    \ This track was produced at UCSC using data that are freely available for\ the deCODE\ and 1000 Genomes genetic maps. Thanks to Po-Ru Loh at the\ Broad Institute for providing the code to lift the hg19 1000 Genomes map data to hg38.\

    \ \

    References

    \

    \ 1000 Genomes Project Consortium., Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA,\ Hurles ME, McVean GA.\ \ A map of human genome variation from population-scale sequencing.\ Nature. 2010 Oct 28;467(7319):1061-73.\ PMID: 20981092; PMC: PMC3042601\

    \ \

    \ Halldorsson BV, Palsson G, Stefansson OA, Jonsson H, Hardarson MT, Eggertsson HP, Gunnarsson B,\ Oddsson A, Halldorsson GH, Zink F et al.\ \ Characterizing mutagenic effects of recombination through a sequence-level genetic map.\ Science. 2019 Jan 25;363(6425).\ PMID: 30679340\

    \ map 1 bigDataUrl /gbdb/hg38/recombRate/recombDenovo.bb\ html recombRate2.html\ longLabel Recombination rate: De-novo mutations found in deCODE samples\ parent recombRate2\ priority 5\ shortLabel Recomb. deCODE Dmn\ track recombDnm\ type bigBed 4 +\ visibility hide\ ncbiRefSeqPsl RefSeq Alignments psl RefSeq Alignments of RNAs 1 5 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault diffCodons\ baseColorUseCds table ncbiRefSeqCds\ baseColorUseSequence extFile seqNcbiRefSeq extNcbiRefSeq\ color 0,0,0\ idXref ncbiRefSeqLink mrnaAcc name\ indelDoubleInsert on\ indelQueryInsert on\ longLabel RefSeq Alignments of RNAs\ parent refSeqComposite off\ pepTable ncbiRefSeqPepTable\ priority 5\ pslSequence no\ shortLabel RefSeq Alignments\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ track ncbiRefSeqPsl\ type psl\ revelOverlaps REVEL overlaps bigBed 9 + REVEL: Positions with >1 score due to overlapping transcripts (mouseover for details) 1 5 150 80 200 202 167 227 0 0 0 https://www.ensembl.org/homo_sapiens/Transcript/Summary?t=$&db=core phenDis 1 bigDataUrl /gbdb/hg38/revel/overlap.bb\ extraTableFields _jsonTable|Title\ longLabel REVEL: Positions with >1 score due to overlapping transcripts (mouseover for details)\ mouseOver REVEL score=${revelScore} for transcript(s): ${transcriptId}\ mouseOverField mouseOver\ parent revel on\ shortLabel REVEL overlaps\ track revelOverlaps\ type bigBed 9 +\ url https://www.ensembl.org/homo_sapiens/Transcript/Summary?t=$&db=core\ urlLabel Link to Ensembl Transcript View\ visibility dense\ genomicSuperDups Segmental Dups bed 6 + Duplications of >1000 Bases of Non-RepeatMasked Sequence 0 5 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track shows regions detected as putative genomic duplications within the\ golden path. The following display conventions are used to distinguish\ levels of similarity:\

      \
    • \ Light to dark gray: 90 - 98% similarity\
    • \ Light to dark yellow: 98 - 99% similarity\
    • \ Light to dark orange: greater than 99% similarity \
    • \ Red: duplications of greater than 98% similarity that lack sufficient \ Segmental Duplication Database evidence (most likely missed overlaps) \
    \ For a region to be included in the track, at least 1 Kb of the total \ sequence (containing at least 500 bp of non-RepeatMasked sequence) had to \ align and a sequence identity of at least 90% was required.

    \ \

    Methods

    \

    \ Segmental duplications play an important role in both genomic disease \ and gene evolution. This track displays an analysis of the global \ organization of these long-range segments of identity in genomic sequence.\

    \ \

    Large recent duplications (>= 1 kb and >= 90% identity) were detected\ by identifying high-copy repeats, removing these repeats from the genomic \ sequence ("fuguization") and searching all sequence for similarity. The\ repeats were then reinserted into the pairwise alignments, the ends of \ alignments trimmed, and global alignments were generated.\ For a full description of the "fuguization" detection method, see Bailey\ et al., 2001. This method has become\ known as WGAC (whole-genome assembly comparison); for example, see Bailey \ et al., 2002.\ \

    Credits

    \

    \ These data were provided by Ginger Cheng, Xinwei She,\ Archana Raja,\ Tin Louie and\ Evan Eichler \ at the University of Washington.

    \ \

    References

    \

    \ Bailey JA, Gu Z, Clark RA, Reinert K, Samonte RV, Schwartz S, Adams MD, \ Myers EW, Li PW, Eichler EE.\ Recent segmental duplications in the human genome.\ Science. 2002 Aug 9;297(5583):1003-7.\ PMID: 12169732\

    \ \

    \ Bailey JA, Yavor AM, Massa HF, Trask BJ, Eichler EE.\ Segmental duplications: organization and impact within the \ current human genome project assembly.\ Genome Res. 2001 Jun;11(6):1005-17.\ PMID: 11381028; PMC: PMC311093\

    \ rep 1 group rep\ longLabel Duplications of >1000 Bases of Non-RepeatMasked Sequence\ noScoreFilter .\ priority 5\ shortLabel Segmental Dups\ track genomicSuperDups\ type bed 6 +\ visibility hide\ tgpHG00702_SH089_CHS SH089 CHS Trio vcfPhasedTrio 1000 Genomes Southern Han Chinese Trio 2 5 0 0 0 127 127 127 0 0 23 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX, varRep 0 longLabel 1000 Genomes Southern Han Chinese Trio\ parent tgpTrios\ shortLabel SH089 CHS Trio\ track tgpHG00702_SH089_CHS\ type vcfPhasedTrio\ vcfChildSample HG00702|child\ vcfParentSamples HG00657|mother,HG00656|father\ visibility full\ wgEncodeRegDnaseUwT47dPeak T-47D Pk narrowPeak T-47D mammary ductal carcinoma cell line DNaseI Peaks from ENCODE 1 5 255 124 85 255 189 170 1 0 0 regulation 1 color 255,124,85\ longLabel T-47D mammary ductal carcinoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel T-47D Pk\ subGroups view=a_Peaks cellType=T-47D treatment=n_a tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwT47dPeak\ wgEncodeRegDnaseUwT47dWig T-47D Sg bigWig 0 34214.8 T-47D mammary ductal carcinoma cell line DNaseI Signal from ENCODE 0 5 255 124 85 255 189 170 0 0 0 regulation 1 color 255,124,85\ longLabel T-47D mammary ductal carcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.04106\ shortLabel T-47D Sg\ subGroups cellType=T-47D treatment=n_a tissue=breast cancer=cancer\ table wgEncodeRegDnaseUwT47dSignal\ track wgEncodeRegDnaseUwT47dWig\ type bigWig 0 34214.8\ unipLocTransMemb Transmembrane bigBed 12 + UniProt Transmembrane Domains 1 5 0 150 0 127 202 127 0 0 0 genes 1 bigDataUrl /gbdb/hg38/uniprot/unipLocTransMemb.bb\ color 0,150,0\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ itemRgb off\ longLabel UniProt Transmembrane Domains\ parent uniprot\ priority 5\ shortLabel Transmembrane\ track unipLocTransMemb\ type bigBed 12 +\ visibility dense\ umap24Quantitative Umap M24 bigWig 0.041667 1.0 Multi-read mappability with 24-mers 2 5 80 20 240 167 137 247 0 0 0 map 0 bigDataUrl /gbdb/hg38/hoffmanMappability/k24.Umap.MultiTrackMappability.bw\ color 80,20,240\ longLabel Multi-read mappability with 24-mers\ parent umapBigWig on\ priority 5\ shortLabel Umap M24\ subGroups view=MR\ track umap24Quantitative\ type bigWig 0.041667 1.0\ iscaLikelyBenign Uncert Ben gvf ClinGen CNVs: Uncertain: Likely Benign 3 5 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/?term=$$ phenDis 1 longLabel ClinGen CNVs: Uncertain: Likely Benign\ parent iscaViewDetail off\ shortLabel Uncert Ben\ subGroups view=cnv class=likB level=sub\ track iscaLikelyBenign\ chainMm10 Mouse Chain chain mm10 Mouse (Dec. 2011 (GRCm38/mm10)) Chained Alignments 3 6 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Mouse (Dec. 2011 (GRCm38/mm10)) Chained Alignments\ otherDb mm10\ parent placentalChainNetViewchain off\ shortLabel Mouse Chain\ subGroups view=chain species=s012a clade=c00\ track chainMm10\ type chain mm10\ netGalGal6 Chicken Net netAlign galGal6 chainGalGal6 Chicken (Mar. 2018 (GRCg6a/galGal6)) Alignment Net 1 6 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Chicken (Mar. 2018 (GRCg6a/galGal6)) Alignment Net\ otherDb galGal6\ parent vertebrateChainNetViewnet on\ shortLabel Chicken Net\ subGroups view=net species=s008a clade=c01\ track netGalGal6\ type netAlign galGal6 chainGalGal6\ netGorGor6 Gorilla Net netAlign gorGor6 chainGorGor6 Gorilla (Aug. 2019 (Kamilah_GGO_v0/gorGor6)) Alignment Net 1 6 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Gorilla (Aug. 2019 (Kamilah_GGO_v0/gorGor6)) Alignment Net\ otherDb gorGor6\ parent primateChainNetViewnet off\ shortLabel Gorilla Net\ subGroups view=net species=s009a clade=c00\ track netGorGor6\ type netAlign gorGor6 chainGorGor6\ encTfChipPkENCFF766YPH A549 CHD4 narrowPeak Transcription Factor ChIP-seq Peaks of CHD4 in A549 from ENCODE 3 (ENCFF766YPH) 0 6 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of CHD4 in A549 from ENCODE 3 (ENCFF766YPH)\ parent encTfChipPk off\ shortLabel A549 CHD4\ subGroups cellType=A549 factor=CHD4\ track encTfChipPkENCFF766YPH\ cloneEndABC16 ABC16 bed 12 Agencourt fosmid library 16 0 6 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 16\ parent cloneEndSuper off\ priority 6\ shortLabel ABC16\ subGroups source=agencourt\ track cloneEndABC16\ type bed 12\ visibility hide\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep1LK4_CNhs13340_tpm_rev AorticSmsToFgf2_00hr15minBr1- bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep1 (LK4)_CNhs13340_12643-134G6_reverse 1 6 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12643-134G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep1%20%28LK4%29.CNhs13340.12643-134G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep1 (LK4)_CNhs13340_12643-134G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12643-134G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep1LK4_CNhs13340_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12643-134G6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep1LK4_CNhs13340_ctss_rev AorticSmsToFgf2_00hr15minBr1- bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep1 (LK4)_CNhs13340_12643-134G6_reverse 0 6 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12643-134G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep1%20%28LK4%29.CNhs13340.12643-134G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep1 (LK4)_CNhs13340_12643-134G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12643-134G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep1LK4_CNhs13340_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12643-134G6\ urlLabel FANTOM5 Details:\ gtexCovArteryTibial Artery Tibia bigWig Artery Tibial 0 6 255 0 0 255 127 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-XPT6-2226-SM-4B66R.Artery_Tibial.RNAseq.bw\ color 255,0,0\ longLabel Artery Tibial\ parent gtexCov\ shortLabel Artery Tibia\ track gtexCovArteryTibial\ bismap36Neg Bismap S36 - bigBed 6 Single-read mappability with 36-mers after bisulfite conversion (reverse strand) 0 6 240 70 80 247 162 167 0 0 0 map 1 bigDataUrl /gbdb/hg38/hoffmanMappability/k36.G2A-Converted.bb\ color 240,70,80\ longLabel Single-read mappability with 36-mers after bisulfite conversion (reverse strand)\ parent bismapBigBed off\ priority 6\ shortLabel Bismap S36 -\ subGroups view=SR\ track bismap36Neg\ visibility hide\ CHOL CHOL bigLolly 12 + Cholangiocarcinoma 0 6 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/CHOL.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Cholangiocarcinoma\ parent gdcCancer off\ priority 6\ shortLabel CHOL\ track CHOL\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ lincRNAsCTColon Colon bed 5 + lincRNAs from colon 1 6 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from colon\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Colon\ subGroups view=lincRNAsRefseqExp tissueType=colon\ track lincRNAsCTColon\ unipLocCytopl Cytoplasmic bigBed 12 + UniProt Cytoplasmic Domains 1 6 255 150 0 255 202 127 0 0 0 genes 1 bigDataUrl /gbdb/hg38/uniprot/unipLocCytopl.bb\ color 255,150,0\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ itemRgb off\ longLabel UniProt Cytoplasmic Domains\ parent uniprot\ priority 6\ shortLabel Cytoplasmic\ track unipLocCytopl\ type bigBed 12 +\ visibility dense\ snpArrayCytoSnp850k CytoSNP 850k bigBed 6 + Illumina 850k CytoSNP Array 3 6 0 0 0 127 127 127 0 0 0

    Description

    \

    Agilent Arrays

    \

    \ The arrays listed in this track are probes from the\ Agilent Catalog Oligonucleotide Microarrays.\

    \

    Please note that more microarray tracks are available on the hg19 genome assembly. \ To view those tracks, please \ click this link for hg19 microarrays.\ Microarrays that are not listed can be added as Custom Tracks with data from the companies.\

    \

    \ Agilent GenetiSure Cyto\

    \

    \ Agilent's oligonucleotide CGH (Comparative Genomic Hybridization) platform enables the\ study of genome-wide DNA copy number changes at a high resolution. The CGH probes on Agilent\ CGH microarrays are 60-mer oligonucleotides synthesized in situ using Agilent's inkjet\ SurePrint technology. The probes represented on the Agilent CGH microarrays have been\ selected using algorithms developed specifically for the CGH application, assuring optimal\ performance of these probes in detecting DNA copy number changes.\

    \ \

    Illumina 450k and 850k Methylation Arrays

    \

    \ With the Infinium MethylationEPIC BeadChip Kit, researchers can interrogate over 850,000\ methylation sites quantitatively across the genome at single-nucleotide resolution. Multiple\ samples, including FFPE, can be analyzed in parallel to deliver high-throughput power while\ minimizing the cost per sample. These tracks show positions being measured on the Illumina 450k and\ 850k (EPIC) microarray tracks. More information about the arrays can be found on the\ Infinium MethylationEPIC Kit website.\ \

    Illumina CytoSNP 850K Probe Array

    \

    \ The Infinium CytoSNP-850K v1.2 BeadChip provides comprehensive coverage of\ cytogenetically relevant genes on a proven platform, helping researchers find valuable information\ that may be missed by other technologies. It contains approximately 850,000 empirically selected\ single nucleotide polymorphisms (SNPs) spanning the entire genome with enriched coverage for 3,262\ genes of known cytogenetics relevance in both constitutional and cancer applications. \

    \ \

    Affymetrix Cytoscan HD GeneChip Array

    \

    \ The CytoScan HD Array, which is included in the\ CytoScan HD Suite, provides the broadest coverage and highest performance for\ detecting chromosomal aberrations. CytoScan HD Suite has greater than 99% sensitivity and can\ reliably detect 25-50kb copy number changes across the genome at high specificity with\ single-nucleotide polymorphism (SNP) allelic corroboration. With more than 2.6 million copy number\ markers, CytoScan HD Suite covers all OMIM and RefSeq genes.\

    \ \ \ \

    Display Conventions and Configuration

    \ \

    \ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

    \ \ \

    Methods

    \

    \ The Agilent arrays were downloaded from their \ Agilent SureDesign website tool on March 2022.

    \

    \ The Illumina 450k and 850k (EPIC) tracks were created using a few columns from the\ Infinium MethylationEPIC v1.0 B5 Manifest File (CSV Format)\ and was then converted into a bigBed.

    \

    \ The Illumina CytoSNP-850K track was created by downloading the\ CytoSNP-850K v1.2 Manifest File (CSV Format) (GRCh38) file and then converted\ into a bigBed file.\

    \

    \ The Affymetrix Cytoscan HD GeneChip Array track was created by converting the \ CytoScanHD_Accel_Array.na36.bed.zip\ into a bigBed file.\

    \ \

    Data Access

    \

    \ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated analysis, the data may be queried from our\ REST API \ or downloaded from our \ Downloads site. Please refer to our\ \ mailing list archives for questions, or our\ \ Data Access FAQ for more information.\

    \ \

    Credits

    \

    \ Thanks to the Aliglent and Illumina support teams for sharing the data and the UCSC Genome Browser\ engineers for configuring the data.

    \ varRep 1 bigDataUrl /gbdb/hg38/bbi/cytoSnp/cytoSnp850k.bb\ colorByStrand 255,0,0 0,0,255\ html genotypeArrays\ longLabel Illumina 850k CytoSNP Array\ noScoreFilter on\ parent genotypeArrays on\ priority 6\ shortLabel CytoSNP 850k\ track snpArrayCytoSnp850k\ type bigBed 6 +\ urls rsID="https://www.ncbi.nlm.nih.gov/snp/?term=$$"\ visibility pack\ dbVar_common_gnomad dbVar Curated gnomAD SVs bigBed 9 + . NCBI dbVar Curated Common SVs: all populations from gnomAD 3 6 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg38/bbi/dbVar/common_gnomad.bb\ longLabel NCBI dbVar Curated Common SVs: all populations from gnomAD\ parent dbVar_common on\ shortLabel dbVar Curated gnomAD SVs\ track dbVar_common_gnomad\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ geneHancerGenes GH genes TSS bigBed 9 GH genes TSS 3 6 0 0 0 127 127 127 0 0 0 http://www.genecards.org/cgi-bin/carddisp.pl?gene=$$ regulation 1 bigDataUrl /gbdb/hg38/geneHancer/geneHancerGenesTssAll.hg38.bb\ longLabel GH genes TSS\ parent ghGeneTss off\ shortLabel GH genes TSS\ subGroups set=b_ALL view=b_TSS\ track geneHancerGenes\ type bigBed 9\ urlLabel In GeneCards:\ netHprcGCA_018467015v1 HG02486.mat netAlign GCA_018467015.1 chainHprcGCA_018467015v1 HG02486.mat HG02486.pri.mat.f1_v2 (May 2021 GCA_018467015.1_HG02486.pri.mat.f1_v2) HPRC project computed Chain Nets 1 6 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02486.mat HG02486.pri.mat.f1_v2 (May 2021 GCA_018467015.1_HG02486.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018467015.1\ parent hprcChainNetViewnet off\ priority 22\ shortLabel HG02486.mat\ subGroups view=net sample=s022 population=afr subpop=acb hap=mat\ track netHprcGCA_018467015v1\ type netAlign GCA_018467015.1 chainHprcGCA_018467015v1\ hr_na12248Vcf HR_NA12248 Variants vcfTabix HR_NA12248 Variants 0 6 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/problematic/highRepro/HR_NA12248.sort.vcf.gz\ longLabel HR_NA12248 Variants\ parent highReproVcfs\ shortLabel HR_NA12248 Variants\ subGroups view=vcfs\ track hr_na12248Vcf\ type vcfTabix\ wgEncodeRegTxnCaltechRnaSeqHuvecR2x75Il200SigPooled HUVEC bigWig 0 65535 Transcription of HUVEC cells from ENCODE 0 6 128 199 255 191 227 255 0 0 0 regulation 1 color 128,199,255\ longLabel Transcription of HUVEC cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegTxn\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 6\ shortLabel HUVEC\ track wgEncodeRegTxnCaltechRnaSeqHuvecR2x75Il200SigPooled\ type bigWig 0 65535\ KAPA_HyperExome_hg38_primary_targets KAPA Hyper T bigBed Roche - KAPA HyperExome Primary Target Regions 0 6 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/KAPA_HyperExome_hg38_primary_targets.bb\ color 100,143,255\ longLabel Roche - KAPA HyperExome Primary Target Regions\ parent exomeProbesets off\ shortLabel KAPA Hyper T\ track KAPA_HyperExome_hg38_primary_targets\ type bigBed\ wgEncodeRegMarkH3k4me1Nhek NHEK bigWig 0 2669 H3K4Me1 Mark (Often Found Near Regulatory Elements) on NHEK Cells from ENCODE 0 6 212 128 255 233 191 255 0 0 0 regulation 1 color 212,128,255\ longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on NHEK Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k4me1\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel NHEK\ table wgEncodeBroadHistoneNhekH3k4me1StdSig\ track wgEncodeRegMarkH3k4me1Nhek\ type bigWig 0 2669\ wgEncodeRegMarkH3k4me3Nhek NHEK bigWig 0 8230 H3K4Me3 Mark (Often Found Near Promoters) on NHEK Cells from ENCODE 0 6 212 128 255 233 191 255 0 0 0 regulation 1 color 212,128,255\ longLabel H3K4Me3 Mark (Often Found Near Promoters) on NHEK Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k4me3\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel NHEK\ table wgEncodeBroadHistoneNhekH3k4me3StdSig\ track wgEncodeRegMarkH3k4me3Nhek\ type bigWig 0 8230\ wgEncodeRegMarkH3k27acNhek NHEK bigWig 0 23439 H3K27Ac Mark (Often Found Near Regulatory Elements) on NHEK Cells from ENCODE 2 6 212 128 255 233 191 255 0 0 0 regulation 1 color 212,128,255\ longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on NHEK Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k27ac\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel NHEK\ table wgEncodeBroadHistoneNhekH3k27acStdSig\ track wgEncodeRegMarkH3k27acNhek\ type bigWig 0 23439\ wgEncodeRegDnaseUwPanc1Peak PANC-1 Pk narrowPeak PANC-1 pancreatic carcinoma cell line DNaseI Peaks from ENCODE 1 6 255 141 85 255 198 170 1 0 0 regulation 1 color 255,141,85\ longLabel PANC-1 pancreatic carcinoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel PANC-1 Pk\ subGroups view=a_Peaks cellType=PANC-1 treatment=n_a tissue=pancreas cancer=cancer\ track wgEncodeRegDnaseUwPanc1Peak\ wgEncodeRegDnaseUwPanc1Wig PANC-1 Sg bigWig 0 12279.3 PANC-1 pancreatic carcinoma cell line DNaseI Signal from ENCODE 0 6 255 141 85 255 198 170 0 0 0 regulation 1 color 255,141,85\ longLabel PANC-1 pancreatic carcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.05908\ shortLabel PANC-1 Sg\ subGroups cellType=PANC-1 treatment=n_a tissue=pancreas cancer=cancer\ table wgEncodeRegDnaseUwPanc1Signal\ track wgEncodeRegDnaseUwPanc1Wig\ type bigWig 0 12279.3\ recomb1000GAvg Recomb. 1k Genomes bigWig Recombination rate: 1000 Genomes, lifted from hg19 (PR Loh) 2 6 0 130 0 127 192 127 0 0 0

    Description

    \

    \ The recombination rate track represents calculated rates of recombination based\ on the genetic maps from deCODE (Halldorsson et al., 2019) and 1000 Genomes\ (2013 Phase 3 release, lifted from hg19). The deCODE map is more recent, has a higher \ resolution and was natively created on hg38 and therefore recommended. \ For the Recomb. deCODE average track, the recombination rates for chrX represent the female rate.\

    \ \

    This track also includes a subtrack with all the\ individual deCODE recombination events and another subtrack with several thousand\ de-novo mutations found in the deCODE sequencing data. These two tracks are hidden by\ default and have to be switched on explicitly on the configuration page.\

    \ \

    Display Conventions and Configuration

    \

    \ This is a super track that contains different subtracks, three with the deCODE\ recombination rates (paternal, maternal and average) and one with the 1000\ Genomes recombination rate (average). These tracks are in \ signal graph\ (wiggle) format. By default, to show most recombination hotspots, their maximum\ value is set to 100 cM, even though many regions have values higher than 100.\ The maximum value can be changed on the configuration pages of the tracks.\

    \ \

    \ There are two more tracks that show additional details provided by deCODE: one\ subtrack with the raw data of all cross-overs tagged with their proband ID and\ another one with around 8000 human de-novo mutation variants that are linked to\ cross-over changes.\

    \ \

    Methods

    \

    \ The deCODE genetic map was created at \ deCODE Genetics. It is based \ on microarrays assaying 626,828 SNP markers that allowed to identify 1,476,140 crossovers in\ 56,321 paternal meioses and 3,055,395 crossovers in 70,086 maternal meioses.\ In total, the data is based on 4,531,535 crossovers in 126,427 meioses. By\ using WGS data with 9,305,070 SNPs, the boundaries for 761,981 crossovers were\ refined: 247,942 crossovers in 9423 paternal meioses and 514,039 crossovers in\ 11,750 maternal meioses. The average resolution of the genetic map is 682 base\ pairs (bp): 655 and 708 bp for the paternal and maternal maps, respectively.\

    \ \

    The 1000 Genomes genetic map is based on the IMPUTE genetic map based on 1000 Genomes Phase 3, on hg19 coordinates. It\ was converted to hg38 by Po-Ru Loh at the Broad Institute. After a run of \ liftOver, he post-processed the data to deal with situations in which\ consecutive map locations became much closer/farther after lifting. The\ heuristic used is sufficient for statistical phasing but may not be optimal for\ other analyses. For this reason, and because of its higher resolution, the DeCODE\ map is therefore recommended for hg38.\

    \ \

    As with all other tracks, the data conversion commands and pointers to the\ original data files are documented in the \ makeDoc file of this track.

    \ \

    Data Access

    \

    \ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\

    \ \

    \ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

    \ bigWigToBedGraph -chrom=chr17 -start=45941345 -end=45942345 http://hgdownload.soe.ucsc.edu/gbdb/hg38/recombRate/recombAvg.bw stdout\
    \

    \ \

    \ Please refer to our\ Data Access FAQ\ for more information.\

    \ \

    Credits

    \

    \ This track was produced at UCSC using data that are freely available for\ the deCODE\ and 1000 Genomes genetic maps. Thanks to Po-Ru Loh at the\ Broad Institute for providing the code to lift the hg19 1000 Genomes map data to hg38.\

    \ \

    References

    \

    \ 1000 Genomes Project Consortium., Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA,\ Hurles ME, McVean GA.\ \ A map of human genome variation from population-scale sequencing.\ Nature. 2010 Oct 28;467(7319):1061-73.\ PMID: 20981092; PMC: PMC3042601\

    \ \

    \ Halldorsson BV, Palsson G, Stefansson OA, Jonsson H, Hardarson MT, Eggertsson HP, Gunnarsson B,\ Oddsson A, Halldorsson GH, Zink F et al.\ \ Characterizing mutagenic effects of recombination through a sequence-level genetic map.\ Science. 2019 Jan 25;363(6425).\ PMID: 30679340\

    \ map 0 bigDataUrl /gbdb/hg38/recombRate/recomb1000GAvg.bw\ html recombRate2.html\ longLabel Recombination rate: 1000 Genomes, lifted from hg19 (PR Loh)\ maxHeightPixels 128:60:8\ parent recombRate2\ priority 6\ shortLabel Recomb. 1k Genomes\ track recomb1000GAvg\ type bigWig\ viewLimits 0.0:100\ viewLimitsMax 0:150000\ visibility full\ ncbiRefSeqGenomicDiff RefSeq Diffs bigBed 9 + Differences between NCBI RefSeq Transcripts and the Reference Genome 1 6 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg38/ncbiRefSeq/ncbiRefSeqGenomicDiff.bb\ itemRgb on\ longLabel Differences between NCBI RefSeq Transcripts and the Reference Genome\ parent refSeqComposite off\ priority 6\ shortLabel RefSeq Diffs\ skipEmptyFields on\ track ncbiRefSeqGenomicDiff\ type bigBed 9 +\ chainSelf Self Chain chain hg38 Human Chained Self Alignments 0 6 100 50 0 255 240 200 1 0 0

    Description

    \

    \ This track shows alignments of the human genome with itself, using\ a gap scoring system that allows longer gaps than traditional\ affine gap scoring systems. The system can also tolerate gaps\ in both sets of sequence simultaneously. After filtering out the \ "trivial" alignments produced when identical locations of the \ genome map to one another (e.g. chrN mapping to chrN), \ the remaining alignments point out areas of duplication within the \ human genome. The pseudoautosomal regions of chrX and chrY are an \ exception: in this assembly, these regions have been copied from chrX into \ chrY, resulting in a large amount of self chains aligning in these positions \ on both chromosomes.

    \

    \ The chain track displays boxes joined together by either single or\ double lines. The boxes represent aligning regions. Single lines indicate \ gaps that are largely due to a deletion in the query assembly or an \ insertion in the target assembly. Double lines represent more complex gaps \ that involve substantial sequence in both the query and target assemblies. \ This may result from inversions, overlapping deletions, an abundance of local \ mutation, or an unsequenced gap in one of the assemblies. In cases where \ multiple chains align over a particular region of the human genome, the \ chains with single-lined gaps are often due to processed pseudogenes, while \ chains with double-lined gaps are more often due to paralogs and unprocessed \ pseudogenes.

    \

    \ Chains have both a score and a normalized score. The score is derived by \ comparing sequence similarity, while penalizing both mismatches and gaps\ in a per base fashion. This leads to longer chains having greater scores, \ even if a smaller chain provides a better match. The normalized score divides\ the score by the length of the alignment, providing a more comparable score value\ not dependent on the match length.

    \ \

    Display Conventions and Configuration

    \

    By default, the chains are colored by the normalized score. This can be changed\ to color based on which chromosome they map to in the aligning organism. There is also\ an option to color all the chains black.

    \

    \ To display only the chains of one chromosome in the aligning\ organism, enter the name of that chromosome (e.g. chr4) in box next to: \ Filter by chromosome.

    \

    \ By default, chains with a score of 20,000 or more are displayed. This default value provides\ a conservative cutoff, filtering out many false-positive alignments with low sequence \ similarity, or high penalties. It should be noted however, that alignments below this \ threshold may still be indicative of homology.

    \

    \ In the "pack" and "full" display\ modes, the individual feature names indicate the chromosome, strand, and\ location (in thousands) of the match for each matching alignment.

    \ \

    Methods

    \

    \ The genome was aligned to itself using blastz. Trivial alignments were \ filtered out, and the remaining alignments were converted into axt format\ using the lavToAxt program. The axt alignments were fed into axtChain, which \ organizes all alignments between a single target chromosome and a single\ query chromosome into a group and creates a kd-tree out of the gapless \ subsections (blocks) of the alignments. A dynamic program was then run over \ the kd-trees to find the maximally scoring chains of these blocks. Chains \ scoring below a threshold were discarded; the remaining chains are displayed \ in this track.

    \ \

    Credits

    \

    \ Blastz was developed at Pennsylvania State University by\ Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from\ Ross Hardison.

    \

    \ Lineage-specific repeats were identified by Arian Smit and his\ RepeatMasker\ program.

    \

    \ The axtChain program was developed at the University of California\ at Santa Cruz by Jim Kent with advice from Webb Miller and David Haussler.\

    \

    \ The browser display and database storage of the chains were generated\ by Robert Baertsch and Jim Kent.

    \ \

    References

    \ \

    \ Chiaromonte F, Yap VB, Miller W.\ Scoring pairwise genomic sequence alignments.\ Pac Symp Biocomput 2002, 115-26 (2002).\

    \ \

    \ Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\ \ Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes.\ Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9.\

    \ \

    \ Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC, Haussler D, Miller W.\ \ Human-mouse alignments with BLASTZ.\ Genome Res. 2003 Jan;13(1):103-7.\

    \ rep 1 altColor 255,240,200\ chainColor Normalized Score\ chainNormScoreAvailable yes\ color 100,50,0\ group rep\ longLabel Human Chained Self Alignments\ matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91\ matrixHeader A, C, G, T\ otherDb hg38\ priority 6\ scoreFilter 20000\ shortLabel Self Chain\ spectrum on\ track chainSelf\ type chain hg38\ visibility hide\ umap36Quantitative Umap M36 bigWig 0.027778 1.0 Multi-read mappability with 36-mers 0 6 80 70 240 167 162 247 0 0 0 map 0 bigDataUrl /gbdb/hg38/hoffmanMappability/k36.Umap.MultiTrackMappability.bw\ color 80,70,240\ longLabel Multi-read mappability with 36-mers\ parent umapBigWig off\ priority 6\ shortLabel Umap M36\ subGroups view=MR\ track umap36Quantitative\ type bigWig 0.027778 1.0\ visibility hide\ iscaLikelyPathogenic Uncert Path gvf ClinGen CNVs: Uncertain: Likely Pathogenic 3 6 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/?term=$$ phenDis 1 longLabel ClinGen CNVs: Uncertain: Likely Pathogenic\ parent iscaViewDetail off\ shortLabel Uncert Path\ subGroups view=cnv class=likP level=sub\ track iscaLikelyPathogenic\ tgpHG02024_VN049_KHV VN049 KHV Trio vcfPhasedTrio 1000 Genomes Kinh in Ho Chi Minh City, Vietnam Trio 2 6 0 0 0 127 127 127 0 0 23 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX, varRep 0 longLabel 1000 Genomes Kinh in Ho Chi Minh City, Vietnam Trio\ parent tgpTrios\ shortLabel VN049 KHV Trio\ track tgpHG02024_VN049_KHV\ type vcfPhasedTrio\ vcfChildSample HG02024|child\ vcfParentSamples HG02025|mother,HG02026|father\ visibility full\ chainAquChr2 aquChr2 Chain chain aquChr2 Golden eagle (Oct. 2014 (aquChr-1.0.2/aquChr2)) Chained Alignments 3 7 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Golden eagle (Oct. 2014 (aquChr-1.0.2/aquChr2)) Chained Alignments\ otherDb aquChr2\ parent vertebrateChainNetViewchain off\ shortLabel aquChr2 Chain\ subGroups view=chain species=s016 clade=c01\ track chainAquChr2\ type chain aquChr2\ chainPonAbe3 Orangutan Chain chain ponAbe3 Orangutan (Jan. 2018 (Susie_PABv2/ponAbe3)) Chained Alignments 3 7 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Orangutan (Jan. 2018 (Susie_PABv2/ponAbe3)) Chained Alignments\ otherDb ponAbe3\ parent primateChainNetViewchain off\ shortLabel Orangutan Chain\ subGroups view=chain species=s013a clade=c00\ track chainPonAbe3\ type chain ponAbe3\ netMm39 Mouse Net netAlign mm39 chainMm39 Mouse (Jun. 2020 (GRCm39/mm39)) Alignment Net 1 7 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Mouse (Jun. 2020 (GRCm39/mm39)) Alignment Net\ otherDb mm39\ parent placentalChainNetViewnet on\ shortLabel Mouse Net\ subGroups view=net species=s012a clade=c00\ track netMm39\ type netAlign mm39 chainMm39\ encTfChipPkENCFF576PUH A549 CREB1 1 narrowPeak Transcription Factor ChIP-seq Peaks of CREB1 in A549 from ENCODE 3 (ENCFF576PUH) 0 7 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of CREB1 in A549 from ENCODE 3 (ENCFF576PUH)\ parent encTfChipPk off\ shortLabel A549 CREB1 1\ subGroups cellType=A549 factor=CREB1\ track encTfChipPkENCFF576PUH\ cloneEndABC18 ABC18 bed 12 Agencourt fosmid library 18 0 7 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 18\ parent cloneEndSuper off\ priority 7\ shortLabel ABC18\ subGroups source=agencourt\ track cloneEndABC18\ type bed 12\ visibility hide\ affyCytoScanHD Affy CytoScan HD bigBed 12 Affymetrix Cytoscan HD GeneChip Array 3 7 0 0 0 127 127 127 0 0 0

    Description

    \

    Agilent Arrays

    \

    \ The arrays listed in this track are probes from the\ Agilent Catalog Oligonucleotide Microarrays.\

    \

    Please note that more microarray tracks are available on the hg19 genome assembly. \ To view those tracks, please \ click this link for hg19 microarrays.\ Microarrays that are not listed can be added as Custom Tracks with data from the companies.\

    \

    \ Agilent GenetiSure Cyto\

    \

    \ Agilent's oligonucleotide CGH (Comparative Genomic Hybridization) platform enables the\ study of genome-wide DNA copy number changes at a high resolution. The CGH probes on Agilent\ CGH microarrays are 60-mer oligonucleotides synthesized in situ using Agilent's inkjet\ SurePrint technology. The probes represented on the Agilent CGH microarrays have been\ selected using algorithms developed specifically for the CGH application, assuring optimal\ performance of these probes in detecting DNA copy number changes.\

    \ \

    Illumina 450k and 850k Methylation Arrays

    \

    \ With the Infinium MethylationEPIC BeadChip Kit, researchers can interrogate over 850,000\ methylation sites quantitatively across the genome at single-nucleotide resolution. Multiple\ samples, including FFPE, can be analyzed in parallel to deliver high-throughput power while\ minimizing the cost per sample. These tracks show positions being measured on the Illumina 450k and\ 850k (EPIC) microarray tracks. More information about the arrays can be found on the\ Infinium MethylationEPIC Kit website.\ \

    Illumina CytoSNP 850K Probe Array

    \

    \ The Infinium CytoSNP-850K v1.2 BeadChip provides comprehensive coverage of\ cytogenetically relevant genes on a proven platform, helping researchers find valuable information\ that may be missed by other technologies. It contains approximately 850,000 empirically selected\ single nucleotide polymorphisms (SNPs) spanning the entire genome with enriched coverage for 3,262\ genes of known cytogenetics relevance in both constitutional and cancer applications. \

    \ \

    Affymetrix Cytoscan HD GeneChip Array

    \

    \ The CytoScan HD Array, which is included in the\ CytoScan HD Suite, provides the broadest coverage and highest performance for\ detecting chromosomal aberrations. CytoScan HD Suite has greater than 99% sensitivity and can\ reliably detect 25-50kb copy number changes across the genome at high specificity with\ single-nucleotide polymorphism (SNP) allelic corroboration. With more than 2.6 million copy number\ markers, CytoScan HD Suite covers all OMIM and RefSeq genes.\

    \ \ \ \

    Display Conventions and Configuration

    \ \

    \ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

    \ \ \

    Methods

    \

    \ The Agilent arrays were downloaded from their \ Agilent SureDesign website tool on March 2022.

    \

    \ The Illumina 450k and 850k (EPIC) tracks were created using a few columns from the\ Infinium MethylationEPIC v1.0 B5 Manifest File (CSV Format)\ and was then converted into a bigBed.

    \

    \ The Illumina CytoSNP-850K track was created by downloading the\ CytoSNP-850K v1.2 Manifest File (CSV Format) (GRCh38) file and then converted\ into a bigBed file.\

    \

    \ The Affymetrix Cytoscan HD GeneChip Array track was created by converting the \ CytoScanHD_Accel_Array.na36.bed.zip\ into a bigBed file.\

    \ \

    Data Access

    \

    \ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated analysis, the data may be queried from our\ REST API \ or downloaded from our \ Downloads site. Please refer to our\ \ mailing list archives for questions, or our\ \ Data Access FAQ for more information.\

    \ \

    Credits

    \

    \ Thanks to the Aliglent and Illumina support teams for sharing the data and the UCSC Genome Browser\ engineers for configuring the data.

    \ varRep 1 bigDataUrl /gbdb/hg38/genotypeArrays/affyCytoScanHD.bb\ html genotypeArrays\ itemRgb on\ longLabel Affymetrix Cytoscan HD GeneChip Array\ parent genotypeArrays on\ priority 7\ shortLabel Affy CytoScan HD\ track affyCytoScanHD\ type bigBed 12\ visibility pack\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep2LK5_CNhs13359_tpm_fwd AorticSmsToFgf2_00hr15minBr2+ bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep2 (LK5)_CNhs13359_12741-135I5_forward 1 7 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12741-135I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep2%20%28LK5%29.CNhs13359.12741-135I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep2 (LK5)_CNhs13359_12741-135I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12741-135I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep2LK5_CNhs13359_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12741-135I5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep2LK5_CNhs13359_ctss_fwd AorticSmsToFgf2_00hr15minBr2+ bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep2 (LK5)_CNhs13359_12741-135I5_forward 0 7 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12741-135I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep2%20%28LK5%29.CNhs13359.12741-135I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep2 (LK5)_CNhs13359_12741-135I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12741-135I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep2LK5_CNhs13359_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12741-135I5\ urlLabel FANTOM5 Details:\ bismap100Neg Bismap S100 - bigBed 6 Single-read mappability with 100-mers after bisulfite conversion (reverse strand) 0 7 240 170 80 247 212 167 0 0 0 map 1 bigDataUrl /gbdb/hg38/hoffmanMappability/k100.G2A-Converted.bb\ color 240,170,80\ longLabel Single-read mappability with 100-mers after bisulfite conversion (reverse strand)\ parent bismapBigBed off\ priority 7\ shortLabel Bismap S100 -\ subGroups view=SR\ track bismap100Neg\ visibility hide\ bismap50Neg Bismap S50 - bigBed 6 Single-read mappability with 50-mers after bisulfite conversion (reverse strand) 0 7 240 120 80 247 187 167 0 0 0 map 1 bigDataUrl /gbdb/hg38/hoffmanMappability/k50.G2A-Converted.bb\ color 240,120,80\ longLabel Single-read mappability with 50-mers after bisulfite conversion (reverse strand)\ parent bismapBigBed off\ priority 7\ shortLabel Bismap S50 -\ subGroups view=SR\ track bismap50Neg\ visibility hide\ gtexCovBladder Bladder bigWig Bladder 0 7 205 183 158 230 219 206 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-S3XE-1226-SM-4AD4L.Bladder.RNAseq.bw\ color 205,183,158\ longLabel Bladder\ parent gtexCov\ shortLabel Bladder\ track gtexCovBladder\ unipChain Chains bigBed 12 + UniProt Mature Protein Products (Polypeptide Chains) 1 7 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg38/uniprot/unipChain.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ longLabel UniProt Mature Protein Products (Polypeptide Chains)\ parent uniprot\ priority 7\ shortLabel Chains\ track unipChain\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#ptm_processing" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility dense\ primateChainNetViewchain Chains bed 3 Primate Genomes, Chain and Net Alignments 3 7 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Primate Genomes, Chain and Net Alignments\ parent primateChainNet\ shortLabel Chains\ spectrum on\ track primateChainNetViewchain\ view chain\ visibility pack\ COAD COAD bigLolly 12 + Colon adenocarcinoma 0 7 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/COAD.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Colon adenocarcinoma\ parent gdcCancer off\ priority 7\ shortLabel COAD\ track COAD\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ iscaCuratedPathogenic Curated Path gvf ClinGen CNVs: Curated Pathogenic 3 7 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/?term=$$ phenDis 1 longLabel ClinGen CNVs: Curated Pathogenic\ parent iscaViewDetail off\ shortLabel Curated Path\ subGroups view=cnv class=path level=cur\ track iscaCuratedPathogenic\ lincRNAsCTForeskin_R Foreskin_R bed 5 + lincRNAs from foreskin_r 1 7 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from foreskin_r\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Foreskin_R\ subGroups view=lincRNAsRefseqExp tissueType=foreskin_r\ track lincRNAsCTForeskin_R\ geneHancerInteractions GH Interactions bigInteract Interactions between GeneHancer regulatory elements and genes 2 7 0 0 0 127 127 127 0 0 0 https://www.genecards.org/cgi-bin/carddisp.pl?gene=$&keywords=$&prefilter=enhancers#enhancers regulation 1 bigDataUrl /gbdb/hg38/geneHancer/geneHancerInteractionsAll.v2.hg38.bb\ longLabel Interactions between GeneHancer regulatory elements and genes\ parent ghInteraction off\ shortLabel GH Interactions\ subGroups set=b_ALL view=c_I\ track geneHancerInteractions\ urlLabel Interaction in GeneCards\ wgEncodeRegDnaseUwHct116Peak HCT-116 Pk narrowPeak HCT-116 colorectal carcinoma cell line DNaseI Peaks from ENCODE 1 7 255 150 85 255 202 170 1 0 0 regulation 1 color 255,150,85\ longLabel HCT-116 colorectal carcinoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HCT-116 Pk\ subGroups view=a_Peaks cellType=HCT-116 treatment=n_a tissue=colon cancer=cancer\ track wgEncodeRegDnaseUwHct116Peak\ wgEncodeRegDnaseUwHct116Wig HCT-116 Sg bigWig 0 27405.3 HCT-116 colorectal carcinoma cell line DNaseI Signal from ENCODE 0 7 255 150 85 255 202 170 0 0 0 regulation 1 color 255,150,85\ longLabel HCT-116 colorectal carcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.06881\ shortLabel HCT-116 Sg\ subGroups cellType=HCT-116 treatment=n_a tissue=colon cancer=cancer\ table wgEncodeRegDnaseUwHct116Signal\ track wgEncodeRegDnaseUwHct116Wig\ type bigWig 0 27405.3\ chainHprcGCA_018467155v1 HG01891.mat chain GCA_018467155.1 HG01891.mat HG01891.pri.mat.f1_v2 (May 2021 GCA_018467155.1_HG01891.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 7 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01891.mat HG01891.pri.mat.f1_v2 (May 2021 GCA_018467155.1_HG01891.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018467155.1\ parent hprcChainNetViewchain off\ priority 23\ shortLabel HG01891.mat\ subGroups view=chain sample=s023 population=afr subpop=acb hap=mat\ track chainHprcGCA_018467155v1\ type chain GCA_018467155.1\ hr_na12249Vcf HR_NA12249 Variants vcfTabix HR_NA12249 Variants 0 7 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/problematic/highRepro/HR_NA12249.sort.vcf.gz\ longLabel HR_NA12249 Variants\ parent highReproVcfs\ shortLabel HR_NA12249 Variants\ subGroups view=vcfs\ track hr_na12249Vcf\ type vcfTabix\ wgEncodeRegTxnCaltechRnaSeqK562R2x75Il200SigPooled K562 bigWig 0 65535 Transcription of K562 cells from ENCODE 0 7 149 128 255 202 191 255 0 0 0 regulation 1 color 149,128,255\ longLabel Transcription of K562 cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegTxn\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 7\ shortLabel K562\ track wgEncodeRegTxnCaltechRnaSeqK562R2x75Il200SigPooled\ type bigWig 0 65535\ primateChainNetViewnet Nets bed 3 Primate Genomes, Chain and Net Alignments 1 7 0 0 0 255 255 0 0 0 0 compGeno 1 longLabel Primate Genomes, Chain and Net Alignments\ parent primateChainNet\ shortLabel Nets\ track primateChainNetViewnet\ view net\ visibility dense\ wgEncodeRegMarkH3k4me1Nhlf NHLF bigWig 0 6866 H3K4Me1 Mark (Often Found Near Regulatory Elements) on NHLF Cells from ENCODE 0 7 255 128 212 255 191 233 0 0 0 regulation 1 color 255,128,212\ longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on NHLF Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k4me1\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel NHLF\ table wgEncodeBroadHistoneNhlfH3k4me1StdSig\ track wgEncodeRegMarkH3k4me1Nhlf\ type bigWig 0 6866\ wgEncodeRegMarkH3k4me3Nhlf NHLF bigWig 0 19229 H3K4Me3 Mark (Often Found Near Promoters) on NHLF Cells from ENCODE 0 7 255 128 212 255 191 233 0 0 0 regulation 1 color 255,128,212\ longLabel H3K4Me3 Mark (Often Found Near Promoters) on NHLF Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k4me3\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel NHLF\ table wgEncodeBroadHistoneNhlfH3k4me3StdSig\ track wgEncodeRegMarkH3k4me3Nhlf\ type bigWig 0 19229\ wgEncodeRegMarkH3k27acNhlf NHLF bigWig 0 3851 H3K27Ac Mark (Often Found Near Regulatory Elements) on NHLF Cells from ENCODE 2 7 255 128 212 255 191 233 0 0 0 regulation 1 color 255,128,212\ longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on NHLF Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k27ac\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel NHLF\ table wgEncodeBroadHistoneNhlfH3k27acStdSig\ track wgEncodeRegMarkH3k27acNhlf\ type bigWig 0 3851\ primateChainNet Primate Chain/Net bed 3 Primate Genomes, Chain and Net Alignments 0 7 0 0 0 255 255 0 0 0 0

    Description

    \

    Chain Track

    \

    \ The chain track shows alignments of human (Dec. 2013 (GRCh38/hg38)) to\ other genomes using a gap scoring system that allows longer gaps \ than traditional affine gap scoring systems. It can also tolerate gaps in both\ human and the other genome simultaneously. These \ "double-sided" gaps can be caused by local inversions and \ overlapping deletions in both species. \

    \ The chain track displays boxes joined together by either single or\ double lines. The boxes represent aligning regions.\ Single lines indicate gaps that are largely due to a deletion in the\ other assembly or an insertion in the human assembly.\ Double lines represent more complex gaps that involve substantial\ sequence in both species. This may result from inversions, overlapping\ deletions, an abundance of local mutation, or an unsequenced gap in one\ species. In cases where multiple chains align over a particular region of\ the other genome, the chains with single-lined gaps are often \ due to processed pseudogenes, while chains with double-lined gaps are more \ often due to paralogs and unprocessed pseudogenes.

    \

    \ In the "pack" and "full" display\ modes, the individual feature names indicate the chromosome, strand, and\ location (in thousands) of the match for each matching alignment.

    \ \

    Net Track

    \

    \ The net track shows only the alignments from the highest-scoring chain\ for each region of the human genome assembly. It is useful for finding\ orthologous regions and for studying genome rearrangement. The human\ sequence used in this annotation is from the Dec. 2013 (GRCh38/hg38) assembly.

    \ \

    Display Conventions and Configuration

    \

    Chain Track

    \

    By default, the chains to chromosome-based assemblies are colored\ based on which chromosome they map to in the aligning organism. To turn\ off the coloring, check the "off" button next to: Color\ track based on chromosome.

    \

    \ To display only the chains of one chromosome in the aligning\ organism, enter the name of that chromosome (e.g. chr4) in box next to: \ Filter by chromosome.

    \ \

    Net Track

    \

    \ In full display mode, the top-level (level 1)\ chains are the largest, highest-scoring chains that\ span this region. In many cases gaps exist in the\ top-level chain. When possible, these are filled in by\ other chains that are displayed at level 2. The gaps in \ level 2 chains may be filled by level 3 chains and so\ forth.

    \

    \ In the graphical display, the boxes represent ungapped \ alignments; the lines represent gaps. Click\ on a box to view detailed information about the chain\ as a whole; click on a line to display information\ about the gap. The detailed information is useful in determining\ the cause of the gap or, for lower level chains, the genomic\ rearrangement.

    \

    \ Individual items in the display are categorized as one of four types\ (other than gap):

    \

      \
    • Top - the best, longest match. Displayed on level 1.\
    • Syn - line-ups on the same chromosome as the gap in the level above\ it.\
    • Inv - a line-up on the same chromosome as the gap above it, but in \ the opposite orientation.\
    • NonSyn - a match to a chromosome different from the gap in the \ level above.\

    \ \

    Methods

    \

    Chain track

    \

    \ The assemblies were examined for any transposons that had been inserted\ since the divergence of the two species. Any such transposons were\ removed before running the alignment. The abbreviated genomes were\ aligned with lastz, and the removed transposons were then added back in.\ The resulting alignments were converted into axt format using the lavToAxt\ program. The axt alignments were fed into axtChain, which organizes all\ alignments between a single human chromosome and a single\ chromosome from the other genome into a group and creates a kd-tree out\ of the gapless subsections (blocks) of the alignments. A dynamic program\ was then run over the kd-trees to find the maximally scoring chains of these\ blocks.\

    \ The lastz matrices used for these alignments can be found in our\ download directory\ for the Dec. 2013 (GRCh38/hg38) assembly. See the README.txt file within the relevant\ vsAssembly directory for details (e.g., parameters for the alignment with\ tarSyr2 can be found in the vsTarSyr2/ subdirectory).\

    \ For the alignments to Chimp and Rhesus, chains scoring below a minimum\ score of '5000' were discarded; the remaining chains\ are displayed in this track. The linear gap matrix used with axtChain:
    \ 

    -linearGap=loose\
\
tablesize    11\
smallSize   111\
position  1   2   3   11  111  2111  12111  32111  72111  152111  252111\
qGap    325 360 400  450  600  1100   3600   7600  15600   31600   56600\
tGap    325 360 400  450  600  1100   3600   7600  15600   31600   56600\
bothGap 625 660 700  750  900  1400   4000   8000  16000   32000   57000\
    \ \ For the alignments to Tarsier and Bonobo, chains scoring\ below a minimum score of '3000' were discarded; the remaining chains\ are displayed in this track. The same linear gap matrix shown above\ was used with axtChain.\

    \

    Chains for low-coverage assemblies for which no browser has been built \ are not available as browser tracks, but only from our\ downloads page.\

    \ \ See also: lastz parameters and other details (e.g., update time) \ and chain minimum score and gap parameters used in these alignments.\ \

    Net track

    \

    \ Chains were derived from lastz alignments, using the methods\ described on the chain tracks description pages, and sorted with the \ highest-scoring chains in the genome ranked first. The program\ chainNet was then used to place the chains one at a time, trimming them as \ necessary to fit into sections not already covered by a higher-scoring chain. \ During this process, a natural hierarchy emerged in which a chain that filled \ a gap in a higher-scoring chain was placed underneath that chain. The program \ netSyntenic was used to fill in information about the relationship between \ higher- and lower-level chains, such as whether a lower-level\ chain was syntenic or inverted relative to the higher-level chain. \ The program netClass was then used to fill in how much of the gaps and chains \ contained Ns (sequencing gaps) in one or both species and how much\ was filled with transposons inserted before and after the two organisms \ diverged.

    \ \

    Credits

    \

    \ Lastz (previously known as blastz) was developed at\ Pennsylvania State University by \ Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from\ Ross Hardison.

    \

    \ Lineage-specific repeats were identified by Arian Smit and his \ RepeatMasker\ program.

    \

    \ The axtChain program was developed at the University of California at \ Santa Cruz by Jim Kent with advice from Webb Miller and David Haussler.

    \

    \ The browser display and database storage of the chains and nets were created\ by Robert Baertsch and Jim Kent.

    \

    \ The chainNet, netSyntenic, and netClass programs were\ developed at the University of California\ Santa Cruz by Jim Kent.

    \

    \ \

    References

    \

    \ Chiaromonte F, Yap VB, Miller W.\ Scoring pairwise genomic sequence alignments.\ Pac Symp Biocomput. 2002:115-26.\ PMID: 11928468\

    \ \

    \ Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\ Evolution's cauldron:\ duplication, deletion, and rearrangement in the mouse and human genomes.\ Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9.\ PMID: 14500911; PMC: PMC208784\

    \ \

    \ Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC,\ Haussler D, Miller W.\ Human-mouse alignments with BLASTZ.\ Genome Res. 2003 Jan;13(1):103-7.\ PMID: 12529312; PMC: PMC430961\

    \ compGeno 1 altColor 255,255,0\ chainLinearGap loose\ chainMinScore 5000\ color 0,0,0\ compositeTrack on\ configurable on\ dimensions dimensionX=clade dimensionY=species\ dragAndDrop subTracks\ group compGeno\ html primateChainNet\ longLabel Primate Genomes, Chain and Net Alignments\ noInherit on\ priority 7\ shortLabel Primate Chain/Net\ sortOrder species=+ view=+ clade=+\ subGroup1 view Views chain=Chains net=Nets\ subGroup2 species Species s000a=Human s000b=Hg38P2 s001=Human s002=J._Craig_Venter s002a=HG01243v3 s0025=Chimp s003=Chimp s004=Chimp s005=Chimp s006=Chimp s007a=Bonobo s007b=Bonobo s008=Bonobo s009a=Gorilla s009b=Gorilla s010=Gorilla s011=Gorilla s012=Gorilla s013a=Orangutan s013b=Orangutan s014=Gibbon s015=Gibbon s016=Proboscis_monkey s017=Black_snub-nosed_monkey s018=Golden_snub-nosed_monkey s019=Angolan_colobus s020=Crab-eating_macaque s021=Rhesus s022=Rhesus s023a=Rhesus s023b=Rhesus s024=Baboon s025=Baboon s026=Baboon s027=Pig-tailed_macaque s028=Sooty_mangabey s029=Green_monkey s030=Green_monkey s031=Drill s032=Squirrel_monkey s033=Ma's_night_monkey s034a=Marmoset s034b=Marmoset s035=Marmoset s036=White-faced_sapajou s037=Tarsier s038=Tarsier s039=Sclater's_lemur s040=Black_lemur s041=Coquerel's_sifaka s042=Mouse_lemur s043=Mouse_lemur s044=Mouse_lemur s045=Bushbaby s046=Bushbaby\ subGroup3 clade Clade c00=hominidae c01=cercopithecinae c02=haplorrhini c03=strepsirrhini\ track primateChainNet\ type bed 3\ visibility hide\ SeqCap-EZ_MedExome_hg38_capture_targets SeqCap EZ Med P bigBed Roche - SeqCap EZ MedExome Capture Probe Footprint 0 7 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/SeqCap_EZ_MedExome_hg38_capture_targets.bb\ color 100,143,255\ longLabel Roche - SeqCap EZ MedExome Capture Probe Footprint\ parent exomeProbesets off\ shortLabel SeqCap EZ Med P\ track SeqCap-EZ_MedExome_hg38_capture_targets\ type bigBed\ simpleRepeat Simple Repeats bed 4 + Simple Tandem Repeats by TRF 0 7 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track displays simple tandem repeats (possibly imperfect repeats) located\ by Tandem Repeats\ Finder (TRF) which is specialized for this purpose. These repeats can\ occur within coding regions of genes and may be quite\ polymorphic. Repeat expansions are sometimes associated with specific\ diseases.

    \ \

    Methods

    \

    \ For more information about the TRF program, see Benson (1999).\

    \ \

    Credits

    \

    \ TRF was written by \ Gary Benson.

    \ \

    References

    \ \

    \ Benson G.\ \ Tandem repeats finder: a program to analyze DNA sequences.\ Nucleic Acids Res. 1999 Jan 15;27(2):573-80.\ PMID: 9862982; PMC: PMC148217\

    \ rep 1 group rep\ longLabel Simple Tandem Repeats by TRF\ priority 7\ shortLabel Simple Repeats\ track simpleRepeat\ type bed 4 +\ visibility hide\ refGene UCSC RefSeq genePred refPep refMrna UCSC annotations of RefSeq RNAs (NM_* and NR_*) 1 7 12 12 120 133 133 187 0 0 0

    Description

    \ \

    \ The RefSeq Genes track shows known human protein-coding and\ non-protein-coding genes taken from the NCBI RNA reference sequences\ collection (RefSeq). The data underlying this track are updated weekly.

    \ \

    \ Please visit the Feedback for Gene and Reference Sequences (RefSeq) page to\ make suggestions, submit additions and corrections, or ask for help concerning\ RefSeq records.\

    \ \

    \ For more information on the different gene tracks, see our Genes FAQ.

    \ \

    Display Conventions and Configuration

    \ \

    \ This track follows the display conventions for\ \ gene prediction tracks.\ The color shading indicates the level of review the RefSeq record has\ undergone: predicted (light), provisional (medium), reviewed (dark).\

    \ \

    \ The item labels and display colors of features within this track can be\ configured through the controls at the top of the track description page.\

      \
    • Label: By default, items are labeled by gene name. Click the\ appropriate Label option to display the accession name instead of the gene\ name, show both the gene and accession names, or turn off the label\ completely.
      • \
    • Codon coloring: This track contains an optional codon coloring\ feature that allows users to quickly validate and compare gene predictions.\ To display codon colors, select the genomic codons option from the\ Color track by codons pull-down menu. For more information about this\ feature, go to the\ \ Coloring Gene Predictions and Annotations by Codon page.
      • \
    • Hide non-coding genes: By default, both the protein-coding and\ non-protein-coding genes are displayed. If you wish to see only the coding\ genes, click this box.
      • \
    \

    \ \

    Methods

    \ \

    \ RefSeq RNAs were aligned against the human genome using BLAT. Those\ with an alignment of less than 15% were discarded. When a single RNA\ aligned in multiple places, the alignment having the highest base identity\ was identified. Only alignments having a base identity level within 0.1% of\ the best and at least 96% base identity with the genomic sequence were kept.\

    \ \

    Credits

    \ \

    \ This track was produced at UCSC from RNA sequence data generated by scientists\ worldwide and curated by the NCBI\ RefSeq project.\

    \ \

    References

    \ \

    \ Kent WJ.\ \ BLAT - the BLAST-like alignment tool.\ Genome Res. 2002 Apr;12(4):656-64.\ PMID: 11932250; PMC: PMC187518\

    \ \

    \ Pruitt KD, Brown GR, Hiatt SM, Thibaud-Nissen F, Astashyn A, Ermolaeva O, Farrell CM, Hart J,\ Landrum MJ, McGarvey KM et al.\ \ RefSeq: an update on mammalian reference sequences.\ Nucleic Acids Res. 2014 Jan;42(Database issue):D756-63.\ PMID: 24259432; PMC: PMC3965018\

    \ \

    \ Pruitt KD, Tatusova T, Maglott DR.\ \ NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.\ Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.\ PMID: 15608248; PMC: PMC539979\

    \ genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 12,12,120\ dataVersion \ group genes\ idXref hgFixed.refLink mrnaAcc name\ longLabel UCSC annotations of RefSeq RNAs (NM_* and NR_*)\ parent refSeqComposite off\ priority 7\ shortLabel UCSC RefSeq\ track refGene\ type genePred refPep refMrna\ visibility dense\ umap50Quantitative Umap M50 bigWig 0.02 1.0 Multi-read mappability with 50-mers 0 7 80 120 240 167 187 247 0 0 0 map 0 bigDataUrl /gbdb/hg38/hoffmanMappability/k50.Umap.MultiTrackMappability.bw\ color 80,120,240\ longLabel Multi-read mappability with 50-mers\ parent umapBigWig off\ priority 7\ shortLabel Umap M50\ subGroups view=MR\ track umap50Quantitative\ type bigWig 0.02 1.0\ visibility hide\ tgpNA19240_Y117_YRI Y117 YRI Trio vcfPhasedTrio 1000 Genomes Yoruban in Ibadan, Nigeria Trio 2 7 0 0 0 127 127 127 0 0 23 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX, varRep 0 longLabel 1000 Genomes Yoruban in Ibadan, Nigeria Trio\ parent tgpTrios\ shortLabel Y117 YRI Trio\ track tgpNA19240_Y117_YRI\ type vcfPhasedTrio\ vcfChildSample NA19240|child\ vcfParentSamples NA19238|mother,NA19239|father\ visibility full\ netAquChr2 aquChr2 Net netAlign aquChr2 chainAquChr2 Golden eagle (Oct. 2014 (aquChr-1.0.2/aquChr2)) Alignment Net 1 8 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Golden eagle (Oct. 2014 (aquChr-1.0.2/aquChr2)) Alignment Net\ otherDb aquChr2\ parent vertebrateChainNetViewnet off\ shortLabel aquChr2 Net\ subGroups view=net species=s016 clade=c01\ track netAquChr2\ type netAlign aquChr2 chainAquChr2\ netPonAbe3 Orangutan Net netAlign ponAbe3 chainPonAbe3 Orangutan (Jan. 2018 (Susie_PABv2/ponAbe3)) Alignment Net 1 8 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Orangutan (Jan. 2018 (Susie_PABv2/ponAbe3)) Alignment Net\ otherDb ponAbe3\ parent primateChainNetViewnet off\ shortLabel Orangutan Net\ subGroups view=net species=s013a clade=c00\ track netPonAbe3\ type netAlign ponAbe3 chainPonAbe3\ netMm10 Mouse Net netAlign mm10 chainMm10 Mouse (Dec. 2011 (GRCm38/mm10)) Alignment Net 1 8 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Mouse (Dec. 2011 (GRCm38/mm10)) Alignment Net\ otherDb mm10\ parent placentalChainNetViewnet on\ shortLabel Mouse Net\ subGroups view=net species=s012a clade=c00\ track netMm10\ type netAlign mm10 chainMm10\ encTfChipPkENCFF186ZET A549 CREB1 2 narrowPeak Transcription Factor ChIP-seq Peaks of CREB1 in A549 from ENCODE 3 (ENCFF186ZET) 0 8 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of CREB1 in A549 from ENCODE 3 (ENCFF186ZET)\ parent encTfChipPk off\ shortLabel A549 CREB1 2\ subGroups cellType=A549 factor=CREB1\ track encTfChipPkENCFF186ZET\ cloneEndABC20 ABC20 bed 12 Agencourt fosmid library 20 0 8 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 20\ parent cloneEndSuper off\ priority 8\ shortLabel ABC20\ subGroups source=agencourt\ track cloneEndABC20\ type bed 12\ visibility hide\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep2LK5_CNhs13359_tpm_rev AorticSmsToFgf2_00hr15minBr2- bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep2 (LK5)_CNhs13359_12741-135I5_reverse 1 8 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12741-135I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep2%20%28LK5%29.CNhs13359.12741-135I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep2 (LK5)_CNhs13359_12741-135I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12741-135I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep2LK5_CNhs13359_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12741-135I5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep2LK5_CNhs13359_ctss_rev AorticSmsToFgf2_00hr15minBr2- bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep2 (LK5)_CNhs13359_12741-135I5_reverse 0 8 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12741-135I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep2%20%28LK5%29.CNhs13359.12741-135I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep2 (LK5)_CNhs13359_12741-135I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12741-135I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep2LK5_CNhs13359_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12741-135I5\ urlLabel FANTOM5 Details:\ gtexCovBrainAmygdala Brain Amygd bigWig Brain Amygdala 0 8 238 238 0 246 246 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-T5JC-0011-R4A-SM-32PLT.Brain_Amygdala.RNAseq.bw\ color 238,238,0\ longLabel Brain Amygdala\ parent gtexCov\ shortLabel Brain Amygd\ track gtexCovBrainAmygdala\ placentalChainNetViewchain Chains bed 3 Non-primate Placental Mammal Genomes, Chain and Net Alignments 3 8 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Non-primate Placental Mammal Genomes, Chain and Net Alignments\ parent placentalChainNet\ shortLabel Chains\ spectrum on\ track placentalChainNetViewchain\ view chain\ visibility pack\ phastCons470way Cons 470 Mammals bigWig 0 1 470 mammals conservation by PhastCons 0 8 70 130 70 130 70 70 0 0 0 compGeno 0 altColor 130,70,70\ autoScale off\ bigDataUrl https://hgdownload.soe.ucsc.edu/goldenPath/hg38/phastCons470way/hg38.phastCons470way.bw\ color 70,130,70\ configurable on\ longLabel 470 mammals conservation by PhastCons\ maxHeightPixels 100:40:11\ noInherit on\ parent cons470wayViewphastcons off\ priority 8\ shortLabel Cons 470 Mammals\ spanList 1\ subGroups view=phastcons\ track phastCons470way\ type bigWig 0 1\ windowingFunction mean\ unipDisulfBond Disulf. Bonds bigBed 12 + UniProt Disulfide Bonds 1 8 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg38/uniprot/unipDisulfBond.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ longLabel UniProt Disulfide Bonds\ parent uniprot\ priority 8\ shortLabel Disulf. Bonds\ track unipDisulfBond\ type bigBed 12 +\ visibility dense\ DLBC DLBC bigLolly 12 + Lymphoid Neoplasm Diffuse Large B-cell Lymphoma 0 8 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/DLBC.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Lymphoid Neoplasm Diffuse Large B-cell Lymphoma\ parent gdcCancer off\ priority 8\ shortLabel DLBC\ track DLBC\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ unipDomain Domains bigBed 12 + UniProt Domains 1 8 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg38/uniprot/unipDomain.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ longLabel UniProt Domains\ parent uniprot\ priority 8\ shortLabel Domains\ track unipDomain\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#family_and_domains" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility dense\ geneHancerClusteredInteractions GH Clusters bigInteract Clustered interactions of GeneHancer regulatory elements and genes 3 8 0 0 0 127 127 127 0 0 0 https://www.genecards.org/cgi-bin/carddisp.pl?gene=$&keywords=$&prefilter=enhancers#enhancers regulation 1 bigDataUrl /gbdb/hg38/geneHancer/geneHancerInteractionsAll.v2.hg38.bb\ longLabel Clustered interactions of GeneHancer regulatory elements and genes\ parent ghClusteredInteraction off\ shortLabel GH Clusters\ subGroups set=b_ALL view=d_I\ track geneHancerClusteredInteractions\ urlLabel Interaction in GeneCards\ lincRNAsCTHeart Heart bed 5 + lincRNAs from heart 1 8 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from heart\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Heart\ subGroups view=lincRNAsRefseqExp tissueType=heart\ track lincRNAsCTHeart\ netHprcGCA_018467155v1 HG01891.mat netAlign GCA_018467155.1 chainHprcGCA_018467155v1 HG01891.mat HG01891.pri.mat.f1_v2 (May 2021 GCA_018467155.1_HG01891.pri.mat.f1_v2) HPRC project computed Chain Nets 1 8 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01891.mat HG01891.pri.mat.f1_v2 (May 2021 GCA_018467155.1_HG01891.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018467155.1\ parent hprcChainNetViewnet off\ priority 23\ shortLabel HG01891.mat\ subGroups view=net sample=s023 population=afr subpop=acb hap=mat\ track netHprcGCA_018467155v1\ type netAlign GCA_018467155.1 chainHprcGCA_018467155v1\ hr_na12878Vcf HR_NA12878 Variants vcfTabix HR_NA12878 Variants 0 8 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/problematic/highRepro/HR_NA12878.sort.vcf.gz\ longLabel HR_NA12878 Variants\ parent highReproVcfs\ shortLabel HR_NA12878 Variants\ subGroups view=vcfs\ track hr_na12878Vcf\ type vcfTabix\ placentalChainNetViewnet Nets bed 3 Non-primate Placental Mammal Genomes, Chain and Net Alignments 1 8 0 0 0 255 255 0 0 0 0 compGeno 1 longLabel Non-primate Placental Mammal Genomes, Chain and Net Alignments\ parent placentalChainNet\ shortLabel Nets\ track placentalChainNetViewnet\ view net\ visibility dense\ wgEncodeRegDnaseUwNhberaPeak NHBE_RA Pk narrowPeak NHBE_RA bronchial epithelium, RA treated DNaseI Peaks from ENCODE 1 8 255 154 85 255 204 170 1 0 0 regulation 1 color 255,154,85\ longLabel NHBE_RA bronchial epithelium, RA treated DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel NHBE_RA Pk\ subGroups view=a_Peaks cellType=NHBE_RA treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwNhberaPeak\ wgEncodeRegDnaseUwNhberaWig NHBE_RA Sg bigWig 0 31238.7 NHBE_RA bronchial epithelium, RA treated DNaseI Signal from ENCODE 0 8 255 154 85 255 204 170 0 0 0 regulation 1 color 255,154,85\ longLabel NHBE_RA bronchial epithelium, RA treated DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.07294\ shortLabel NHBE_RA Sg\ subGroups cellType=NHBE_RA treatment=n_a tissue=lung cancer=normal\ table wgEncodeRegDnaseUwNhberaSignal\ track wgEncodeRegDnaseUwNhberaWig\ type bigWig 0 31238.7\ wgEncodeRegTxnCaltechRnaSeqNhekR2x75Il200SigPooled NHEK bigWig 0 65535 Transcription of NHEK cells from ENCODE 0 8 227 128 255 241 191 255 0 0 0 regulation 1 color 227,128,255\ longLabel Transcription of NHEK cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegTxn\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 8\ shortLabel NHEK\ track wgEncodeRegTxnCaltechRnaSeqNhekR2x75Il200SigPooled\ type bigWig 0 65535\ iscaPathogenic Pathogenic gvf ClinGen CNVs: Pathogenic 3 8 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/?term=$$ phenDis 1 longLabel ClinGen CNVs: Pathogenic\ parent iscaViewDetail\ shortLabel Pathogenic\ subGroups view=cnv class=path level=sub\ track iscaPathogenic\ placentalChainNet Placental Chain/Net bed 3 Non-primate Placental Mammal Genomes, Chain and Net Alignments 0 8 0 0 0 255 255 0 0 0 0

    Description

    \

    Chain Track

    \

    \ The chain track shows alignments of human (Dec. 2013 (GRCh38/hg38)) to\ other genomes using a gap scoring system that allows longer gaps \ than traditional affine gap scoring systems. It can also tolerate gaps in both\ human and the other genome simultaneously. These \ "double-sided" gaps can be caused by local inversions and \ overlapping deletions in both species. \

    \ The chain track displays boxes joined together by either single or\ double lines. The boxes represent aligning regions.\ Single lines indicate gaps that are largely due to a deletion in the\ other assembly or an insertion in the human assembly.\ Double lines represent more complex gaps that involve substantial\ sequence in both species. This may result from inversions, overlapping\ deletions, an abundance of local mutation, or an unsequenced gap in one\ species. In cases where multiple chains align over a particular region of\ the other genome, the chains with single-lined gaps are often \ due to processed pseudogenes, while chains with double-lined gaps are more \ often due to paralogs and unprocessed pseudogenes.

    \

    \ In the "pack" and "full" display\ modes, the individual feature names indicate the chromosome, strand, and\ location (in thousands) of the match for each matching alignment.

    \ \

    Net Track

    \

    \ The net track shows the best human/other chain for \ every part of the other genome. It is useful for\ finding orthologous regions and for studying genome\ rearrangement. The human sequence used in this annotation is from\ the Dec. 2013 (GRCh38/hg38) assembly.

    \ \

    Display Conventions and Configuration

    \

    Chain Track

    \

    By default, the chains to chromosome-based assemblies are colored\ based on which chromosome they map to in the aligning organism. To turn\ off the coloring, check the "off" button next to: Color\ track based on chromosome.

    \

    \ To display only the chains of one chromosome in the aligning\ organism, enter the name of that chromosome (e.g. chr4) in box next to: \ Filter by chromosome.

    \ \

    Net Track

    \

    \ In full display mode, the top-level (level 1)\ chains are the largest, highest-scoring chains that\ span this region. In many cases gaps exist in the\ top-level chain. When possible, these are filled in by\ other chains that are displayed at level 2. The gaps in \ level 2 chains may be filled by level 3 chains and so\ forth.

    \

    \ In the graphical display, the boxes represent ungapped \ alignments; the lines represent gaps. Click\ on a box to view detailed information about the chain\ as a whole; click on a line to display information\ about the gap. The detailed information is useful in determining\ the cause of the gap or, for lower level chains, the genomic\ rearrangement.

    \

    \ Individual items in the display are categorized as one of four types\ (other than gap):

    \

      \
    • Top - the best, longest match. Displayed on level 1.\
    • Syn - line-ups on the same chromosome as the gap in the level above\ it.\
    • Inv - a line-up on the same chromosome as the gap above it, but in \ the opposite orientation.\
    • NonSyn - a match to a chromosome different from the gap in the \ level above.\

    \ \

    Methods

    \

    Chain track

    \

    \ Transposons that have been inserted since the human/other\ split were removed from the assemblies. The abbreviated genomes were\ aligned with lastz, and the transposons were added back in.\ The resulting alignments were converted into axt format using the lavToAxt\ program. The axt alignments were fed into axtChain, which organizes all\ alignments between a single human chromosome and a single\ chromosome from the other genome into a group and creates a kd-tree out\ of the gapless subsections (blocks) of the alignments. A dynamic program\ was then run over the kd-trees to find the maximally scoring chains of these\ blocks.\ \ \ \ Chains scoring below a minimum score of '5000' were discarded;\ the remaining chains are displayed in this track. The linear gap\ matrix used with axtChain:
    \ 

    -linearGap=loose\
\
tablesize    11\
smallSize   111\
position  1   2   3   11  111  2111  12111  32111  72111  152111  252111\
qGap    325 360 400  450  600  1100   3600   7600  15600   31600   56600\
tGap    325 360 400  450  600  1100   3600   7600  15600   31600   56600\
bothGap 625 660 700  750  900  1400   4000   8000  16000   32000   57000\
    \ \ See also: lastz parameters used in these alignments,\ and chain minimum score and gap parameters used in these alignments.\

    \ \

    Net track

    \

    \ Chains were derived from lastz alignments, using the methods\ described on the chain tracks description pages, and sorted with the \ highest-scoring chains in the genome ranked first. The program\ chainNet was then used to place the chains one at a time, trimming them as \ necessary to fit into sections not already covered by a higher-scoring chain. \ During this process, a natural hierarchy emerged in which a chain that filled \ a gap in a higher-scoring chain was placed underneath that chain. The program \ netSyntenic was used to fill in information about the relationship between \ higher- and lower-level chains, such as whether a lower-level\ chain was syntenic or inverted relative to the higher-level chain. \ The program netClass was then used to fill in how much of the gaps and chains \ contained Ns (sequencing gaps) in one or both species and how much\ was filled with transposons inserted before and after the two organisms \ diverged.

    \ \

    Credits

    \

    \ Lastz (previously known as blastz) was developed at\ Pennsylvania State University by \ Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from\ Ross Hardison.

    \

    \ Lineage-specific repeats were identified by Arian Smit and his \ RepeatMasker\ program.

    \

    \ The axtChain program was developed at the University of California at \ Santa Cruz by Jim Kent with advice from Webb Miller and David Haussler.

    \

    \ The browser display and database storage of the chains and nets were created\ by Robert Baertsch and Jim Kent.

    \

    \ The chainNet, netSyntenic, and netClass programs were\ developed at the University of California\ Santa Cruz by Jim Kent.

    \

    \ \

    References

    \

    \ Chiaromonte F, Yap VB, Miller W.\ Scoring pairwise genomic sequence alignments.\ Pac Symp Biocomput. 2002:115-26.\ PMID: 11928468\

    \ \

    \ Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\ Evolution's cauldron:\ duplication, deletion, and rearrangement in the mouse and human genomes.\ Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9.\ PMID: 14500911; PMC: PMC208784\

    \ \

    \ Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC,\ Haussler D, Miller W.\ Human-mouse alignments with BLASTZ.\ Genome Res. 2003 Jan;13(1):103-7.\ PMID: 12529312; PMC: PMC430961\

    \ compGeno 1 altColor 255,255,0\ chainLinearGap loose\ chainMinScore 5000\ color 0,0,0\ compositeTrack on\ configurable on\ dimensions dimensionX=clade dimensionY=species\ dragAndDrop subTracks\ group compGeno\ html placentalChainNet\ longLabel Non-primate Placental Mammal Genomes, Chain and Net Alignments\ noInherit on\ priority 8\ shortLabel Placental Chain/Net\ sortOrder species=+ view=+ clade=+\ subGroup1 view Views chain=Chains net=Nets\ subGroup2 species Species s000=Guinea_pig s001=Guinea_pig s002=Chinchilla s003=Chinese_hamster s004a=Chinese_hamster_CHOv1 s004b=Chinese_hamster_CHOv2 s004c=RegenCHO1 s005a=Kangaroo_rat s005b=Beaver s006=Malayan_flying_lemur s007=Naked_mole-rat s008=Naked_mole-rat s0081=Damara_mole-rat s009=Lesser_Egyptian_jerboa s010=Golden_hamster s011=Prairie_vole s012a=Mouse s012b=Mouse38B s012c=Mouse s013=Mouse s014=Mouse s015=Mouse s016=Mouse s017=Upper_Galilee_mountains_blind_mole_rat s018=Pika s019=Pika s020=Brush-tailed_rat s021=Rabbit s022=Rabbit s023=Prairie_deer_mouse s024a=Rat s024b=RegenRn1 s024c=RegenRn0 s024d=Rat s025=Rat s026=Rat s027=Rat s028=Rat s029=Squirrel s030=Squirrel s031=Tree_shrew s032=Chinese_tree_shrew s033=Panda s034a=Dog s034b=Dog s034c=Dog s034d=Dog s035=Dog s036=Dog s037a=Dog s037b=Domestic_cat s037c=Cat s038=Cat s039=Cat s040=Cat s041=Cat s042=Weddell_seal s043=Ferret s043a=Southern_sea_otter s044=Hawaiian_monk_seal s045=Pacific_walrus s046=Amur_tiger s047=Polar_bear s048=Minke_whale s049=Bison s050=Wild_yak s051a=Cow s051b=Cow s052=Cow s053=Cow s054=Cow s055=Cow s056=Cow s057=Cow s058=Cow s059=Cow s060=Water_buffalo s061=Bactrian_camel s062=Domestic_goat s063=Yangtze_river_dolphin s064=Killer_whale s065a=Sheep s065b=Sheep s065c=Sheep s065d=Sheep s067=Tibetan_antelope s068=Sperm_whale s069=Pig s070=Pig s071=Pig s072=Pig s073=Dolphin s074=Dolphin s075=Alpaca s076=Alpaca s077=Straw_colored_fruit_bat s078=Big_brown_bat s079=Indian_false_vampire s080=Brandt's_myotis_(bat) s081=David's_myotis_(bat) s082=Microbat s083=Microbat s084=Black_flying-fox s085=Parnell's_mustached_bat s086=Megabat s087=Greater_horseshoe_bat s088=Egyptian_rousette s089=Star-nosed_mole s090=Hedgehog s091=Hedgehog s092=Chinese_pangolin s093=Shrew s094=Shrew s095=White_rhinoceros s096a=Horse s096b=Horse s096c=Horse s098=Przewalski_horse s099=Sloth s100=Armadillo s101=Armadillo s102=Armadillo s103=Cape_golden_mole s104=Tenrec s105=Tenrec s106=Cape_elephant_shrew s107=Elephant s108=Elephant s109a=Asiatic_elephant s109b=Elephant s110=Aardvark s111=Rock_hyrax s112=Manatee\ subGroup3 clade Clade c00=Euarchontoglires c01=Carnivora c02=Cetartiodactyla c03=Chiroptera c04=Laurasiatheria c05=Perissodactyla c06=Xenarthra c07=Afrotheria\ track placentalChainNet\ type bed 3\ visibility hide\ ncbiRefSeqSelect RefSeq Select and MANE genePred NCBI RefSeq Select and MANE subset: A single representative transcript 1 8 20 20 160 137 137 207 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 20,20,160\ idXref ncbiRefSeqLink mrnaAcc name\ longLabel NCBI RefSeq Select and MANE subset: A single representative transcript\ parent refSeqComposite off\ priority 8\ shortLabel RefSeq Select and MANE\ track ncbiRefSeqSelect\ trackHandler ncbiRefSeq\ type genePred\ SeqCap-EZ_MedExome_hg19_empirical_targets SeqCap EZ Med T bigBed Roche - SeqCap EZ MedExome Empirical Target Regions 0 8 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/SeqCap_EZ_MedExome_hg38_empirical_targets.bb\ color 100,143,255\ longLabel Roche - SeqCap EZ MedExome Empirical Target Regions\ parent exomeProbesets off\ shortLabel SeqCap EZ Med T\ track SeqCap-EZ_MedExome_hg19_empirical_targets\ type bigBed\ umap100Quantitative Umap M100 bigWig 0.01 1.0 Multi-read mappability with 100-mers 0 8 80 170 240 167 212 247 0 0 0 map 0 bigDataUrl /gbdb/hg38/hoffmanMappability/k100.Umap.MultiTrackMappability.bw\ color 80,170,240\ longLabel Multi-read mappability with 100-mers\ parent umapBigWig off\ priority 8\ shortLabel Umap M100\ subGroups view=MR\ track umap100Quantitative\ type bigWig 0.01 1.0\ visibility hide\ windowmaskerSdust WM + SDust bed 3 Genomic Intervals Masked by WindowMasker + SDust 0 8 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ This track depicts masked sequence as determined by\ WindowMasker. The\ WindowMasker tool is included in the NCBI C++ toolkit. The source code\ for the entire toolkit is available from the NCBI\ \ FTP site.\

    \ \

    Methods

    \ \

    \ To create this track, WindowMasker was run with the following parameters:\ 

    \
windowmasker -mk_counts true -input hg38.fa -output wm_counts\
windowmasker -ustat wm_counts -sdust true -input hg38.fa -output repeats.bed\
    \ The repeats.bed (BED3) file was loaded into the "windowmaskerSdust" table for\ this track.\

    \ \

    References

    \ \

    \ Morgulis A, Gertz EM, Schäffer AA, Agarwala R.\ WindowMasker: window-based masker for sequenced genomes.\ Bioinformatics. 2006 Jan 15;22(2):134-41.\ PMID: 16287941\

    \ rep 1 group rep\ longLabel Genomic Intervals Masked by WindowMasker + SDust\ priority 8\ shortLabel WM + SDust\ track windowmaskerSdust\ type bed 3\ visibility hide\ chainThaSir1 thaSir1 Chain chain thaSir1 Garter snake (Jun. 2015 (Thamnophis_sirtalis-6.0/thaSir1)) Chained Alignments 3 9 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Garter snake (Jun. 2015 (Thamnophis_sirtalis-6.0/thaSir1)) Chained Alignments\ otherDb thaSir1\ parent vertebrateChainNetViewchain off\ shortLabel thaSir1 Chain\ subGroups view=chain species=s028b clade=c02\ track chainThaSir1\ type chain thaSir1\ chainNomLeu3 Gibbon Chain chain nomLeu3 Gibbon (Oct. 2012 (GGSC Nleu3.0/nomLeu3)) Chained Alignments 3 9 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Gibbon (Oct. 2012 (GGSC Nleu3.0/nomLeu3)) Chained Alignments\ otherDb nomLeu3\ parent primateChainNetViewchain off\ shortLabel Gibbon Chain\ subGroups view=chain species=s014 clade=c00\ track chainNomLeu3\ type chain nomLeu3\ chainRn7 Rat Chain chain rn7 Rat (Nov. 2020 (mRatBN7.2/rn7)) Chained Alignments 3 9 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Rat (Nov. 2020 (mRatBN7.2/rn7)) Chained Alignments\ otherDb rn7\ parent placentalChainNetViewchain off\ shortLabel Rat Chain\ subGroups view=chain species=s024a clade=c00\ track chainRn7\ type chain rn7\ phastConsElements470way 470 Mamm. El bigBed 5 . 470 mammals Conserved Elements 0 9 110 10 40 182 132 147 0 0 0 compGeno 1 bigDataUrl https://hgdownload.soe.ucsc.edu/goldenPath/hg38/phastCons470way/hg38.phastConsElements470way.bb\ color 110,10,40\ longLabel 470 mammals Conserved Elements\ noInherit on\ parent cons470wayViewelements off\ priority 9\ shortLabel 470 Mamm. El\ subGroups view=elements\ track phastConsElements470way\ type bigBed 5 .\ encTfChipPkENCFF535MZG A549 CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in A549 from ENCODE 3 (ENCFF535MZG) 0 9 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in A549 from ENCODE 3 (ENCFF535MZG)\ parent encTfChipPk off\ shortLabel A549 CTCF 1\ subGroups cellType=A549 factor=CTCF\ track encTfChipPkENCFF535MZG\ unipModif AA Modifications bigBed 12 + UniProt Amino Acid Modifications 1 9 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg38/uniprot/unipModif.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ longLabel UniProt Amino Acid Modifications\ parent uniprot\ priority 9\ shortLabel AA Modifications\ track unipModif\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#aaMod_section" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility dense\ cloneEndABC21 ABC21 bed 12 Agencourt fosmid library 21 0 9 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 21\ parent cloneEndSuper off\ priority 9\ shortLabel ABC21\ subGroups source=agencourt\ track cloneEndABC21\ type bed 12\ visibility hide\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep3LK6_CNhs13568_tpm_fwd AorticSmsToFgf2_00hr15minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep3 (LK6)_CNhs13568_12839-137B4_forward 1 9 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12839-137B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep3%20%28LK6%29.CNhs13568.12839-137B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep3 (LK6)_CNhs13568_12839-137B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12839-137B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep3LK6_CNhs13568_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12839-137B4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep3LK6_CNhs13568_ctss_fwd AorticSmsToFgf2_00hr15minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep3 (LK6)_CNhs13568_12839-137B4_forward 0 9 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12839-137B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep3%20%28LK6%29.CNhs13568.12839-137B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep3 (LK6)_CNhs13568_12839-137B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12839-137B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep3LK6_CNhs13568_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12839-137B4\ urlLabel FANTOM5 Details:\ bismap24Quantitative Bismap M24 bigWig 0.041667 1.0 Multi-read mappability with 24-mers after bisulfite conversion 2 9 240 20 80 247 137 167 0 0 0 map 0 bigDataUrl /gbdb/hg38/hoffmanMappability/k24.Bismap.MultiTrackMappability.bw\ color 240,20,80\ longLabel Multi-read mappability with 24-mers after bisulfite conversion\ parent bismapBigWig on\ priority 9\ shortLabel Bismap M24\ subGroups view=MR\ track bismap24Quantitative\ type bigWig 0.041667 1.0\ visibility full\ gtexCovBrainAnteriorcingulatecortexBA24 Brain Ant cin cort bigWig Brain Anterior cingulate cortex BA24 0 9 238 238 0 246 246 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-14PN4-0011-R3b-SM-686ZU.Brain_Anterior_cingulate_cortex_BA24.RNAseq.bw\ color 238,238,0\ longLabel Brain Anterior cingulate cortex BA24\ parent gtexCov\ shortLabel Brain Ant cin cort\ track gtexCovBrainAnteriorcingulatecortexBA24\ vertebrateChainNetViewchain Chains bed 3 Non-placental Vertebrate Genomes, Chain and Net Alignments 3 9 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Non-placental Vertebrate Genomes, Chain and Net Alignments\ parent vertebrateChainNet\ shortLabel Chains\ spectrum on\ track vertebrateChainNetViewchain\ view chain\ visibility pack\ ESCA ESCA bigLolly 12 + Esophageal carcinoma 0 9 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/ESCA.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Esophageal carcinoma\ parent gdcCancer off\ priority 9\ shortLabel ESCA\ track ESCA\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ wgEncodeRegDnaseUwHffPeak HFF Pk narrowPeak HFF foreskin fibroblast DNaseI Peaks from ENCODE 1 9 255 163 85 255 209 170 1 0 0 regulation 1 color 255,163,85\ longLabel HFF foreskin fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HFF Pk\ subGroups view=a_Peaks cellType=HFF treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwHffPeak\ wgEncodeRegDnaseUwHffWig HFF Sg bigWig 0 17635.9 HFF foreskin fibroblast DNaseI Signal from ENCODE 0 9 255 163 85 255 209 170 0 0 0 regulation 1 color 255,163,85\ longLabel HFF foreskin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.0818\ shortLabel HFF Sg\ subGroups cellType=HFF treatment=n_a tissue=skin cancer=normal\ table wgEncodeRegDnaseUwHffSignal\ track wgEncodeRegDnaseUwHffWig\ type bigWig 0 17635.9\ chainHprcGCA_018505825v1 HG02109.mat chain GCA_018505825.1 HG02109.mat HG02109.pri.mat.f1_v2 (May 2021 GCA_018505825.1_HG02109.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 9 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02109.mat HG02109.pri.mat.f1_v2 (May 2021 GCA_018505825.1_HG02109.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018505825.1\ parent hprcChainNetViewchain off\ priority 25\ shortLabel HG02109.mat\ subGroups view=chain sample=s025 population=afr subpop=acb hap=mat\ track chainHprcGCA_018505825v1\ type chain GCA_018505825.1\ lincRNAsCThLF_r1 hLF_r1 bed 5 + lincRNAs from hlf_r1 1 9 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from hlf_r1\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel hLF_r1\ subGroups view=lincRNAsRefseqExp tissueType=hlf_r1\ track lincRNAsCThLF_r1\ vertebrateChainNetViewnet Nets bed 3 Non-placental Vertebrate Genomes, Chain and Net Alignments 1 9 0 0 0 255 255 0 0 0 0 compGeno 1 longLabel Non-placental Vertebrate Genomes, Chain and Net Alignments\ parent vertebrateChainNet\ shortLabel Nets\ track vertebrateChainNetViewnet\ view net\ visibility dense\ wgEncodeRegTxnCaltechRnaSeqNhlfR2x75Il200SigPooled NHLF bigWig 0 65535 Transcription of NHLF cells from ENCODE 0 9 255 128 212 255 191 233 0 0 0 regulation 1 color 255,128,212\ longLabel Transcription of NHLF cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegTxn\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 9\ shortLabel NHLF\ track wgEncodeRegTxnCaltechRnaSeqNhlfR2x75Il200SigPooled\ type bigWig 0 65535\ iscaPathGainCum Path Gain bedGraph 4 ClinGen CNVs: Pathogenic Gain Coverage 2 9 0 0 200 127 127 227 0 0 0 phenDis 0 color 0,0,200\ longLabel ClinGen CNVs: Pathogenic Gain Coverage\ parent iscaViewTotal\ shortLabel Path Gain\ subGroups view=cov class=path level=sub\ track iscaPathGainCum\ ncbiRefSeqHgmd RefSeq HGMD genePred NCBI RefSeq HGMD subset: transcripts with clinical variants in HGMD 1 9 20 20 160 137 137 207 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 20,20,160\ idXref ncbiRefSeqLink mrnaAcc name\ longLabel NCBI RefSeq HGMD subset: transcripts with clinical variants in HGMD\ parent refSeqComposite off\ priority 9\ shortLabel RefSeq HGMD\ track ncbiRefSeqHgmd\ trackHandler ncbiRefSeq\ type genePred\ SeqCap-EZ_MedExomePlusMito_hg19_capture_targets SeqCap EZ Med+Mito P bigBed Roche - SeqCap EZ MedExome + Mito Capture Probe Footprint 0 9 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/SeqCap_EZ_MedExomePlusMito_hg38_capture_targets.bb\ color 100,143,255\ longLabel Roche - SeqCap EZ MedExome + Mito Capture Probe Footprint\ parent exomeProbesets on\ shortLabel SeqCap EZ Med+Mito P\ track SeqCap-EZ_MedExomePlusMito_hg19_capture_targets\ type bigBed\ vertebrateChainNet Vertebrate Chain/Net bed 3 Non-placental Vertebrate Genomes, Chain and Net Alignments 0 9 0 0 0 255 255 0 0 0 0

    Description

    \

    Chain Track

    \

    \ The chain track shows alignments of human (Dec. 2013 (GRCh38/hg38)) to\ other genomes using a gap scoring system that allows longer gaps \ than traditional affine gap scoring systems. It can also tolerate gaps in both\ human and the other genome simultaneously. These \ "double-sided" gaps can be caused by local inversions and \ overlapping deletions in both species. \

    \ The chain track displays boxes joined together by either single or\ double lines. The boxes represent aligning regions.\ Single lines indicate gaps that are largely due to a deletion in the\ other assembly or an insertion in the human assembly.\ Double lines represent more complex gaps that involve substantial\ sequence in both species. This may result from inversions, overlapping\ deletions, an abundance of local mutation, or an unsequenced gap in one\ species. In cases where multiple chains align over a particular region of\ the other genome, the chains with single-lined gaps are often \ due to processed pseudogenes, while chains with double-lined gaps are more \ often due to paralogs and unprocessed pseudogenes.

    \

    \ In the "pack" and "full" display\ modes, the individual feature names indicate the chromosome, strand, and\ location (in thousands) of the match for each matching alignment.

    \ \

    Net Track

    \

    \ The net track shows the best human/other chain for \ every part of the other genome. It is useful for\ finding orthologous regions and for studying genome\ rearrangement. The human sequence used in this annotation is from\ the Dec. 2013 (GRCh38/hg38) assembly.

    \ \

    Display Conventions and Configuration

    \

    Chain Track

    \

    By default, the chains to chromosome-based assemblies are colored\ based on which chromosome they map to in the aligning organism. To turn\ off the coloring, check the "off" button next to: Color\ track based on chromosome.

    \

    \ To display only the chains of one chromosome in the aligning\ organism, enter the name of that chromosome (e.g. chr4) in box next to: \ Filter by chromosome.

    \ \

    Net Track

    \

    \ In full display mode, the top-level (level 1)\ chains are the largest, highest-scoring chains that\ span this region. In many cases gaps exist in the\ top-level chain. When possible, these are filled in by\ other chains that are displayed at level 2. The gaps in \ level 2 chains may be filled by level 3 chains and so\ forth.

    \

    \ In the graphical display, the boxes represent ungapped \ alignments; the lines represent gaps. Click\ on a box to view detailed information about the chain\ as a whole; click on a line to display information\ about the gap. The detailed information is useful in determining\ the cause of the gap or, for lower level chains, the genomic\ rearrangement.

    \

    \ Individual items in the display are categorized as one of four types\ (other than gap):

    \

      \
    • Top - the best, longest match. Displayed on level 1.\
    • Syn - line-ups on the same chromosome as the gap in the level above\ it.\
    • Inv - a line-up on the same chromosome as the gap above it, but in \ the opposite orientation.\
    • NonSyn - a match to a chromosome different from the gap in the \ level above.\

    \ \

    Methods

    \

    Chain track

    \

    \ Transposons that have been inserted since the human/other\ split were removed from the assemblies. The abbreviated genomes were\ aligned with lastz, and the transposons were added back in.\ The resulting alignments were converted into axt format using the lavToAxt\ program. The axt alignments were fed into axtChain, which organizes all\ alignments between a single human chromosome and a single\ chromosome from the other genome into a group and creates a kd-tree out\ of the gapless subsections (blocks) of the alignments. A dynamic program\ was then run over the kd-trees to find the maximally scoring chains of these\ blocks.\ \

    \
    \

    \

    \ The following lastz matrix was used
    for the alignments to: Wallaby, Tasmanian Devil\

    \ \ \ \ \ \ \ \
     ACGT
    A91-114-31-123
    C-114100-125-31
    G-31-125100-114
    T-123-31-11491
    \ \     		 \

    \

    \ The following lastz matrix was used
    for the alignments to: American Alligator, Medium Ground Finch,
    \ Opossum, Platypus, Chicken, Zebra Finch, Lizard, X. tropicalis,
    \ Stickleback, Fugu, Zebrafish, Tetraodon, Medaka, Lamprey\

    \ \ \ \ \ \ \
     ACGT
    A91-90-25-100
    C-90100-100-25
    G-25-100100-90
    T-100-25-9091
    \

    \ \ For the Wallaby alignment, chains scoring below a minimum score\ of '3000' were discarded; the remaining chains are displayed in this track.\ The linear gap matrix used with axtChain:
    \ \ 
    -linearGap=medium\
\
tableSize    11\
smallSize   111\
position  1   2   3   11  111  2111  12111  32111   72111  152111  252111\
qGap    350 425 450  600  900  2900  22900  57900  117900  217900  317900\
tGap    350 425 450  600  900  2900  22900  57900  117900  217900  317900\
bothGap 750 825 850 1000 1300  3300  23300  58300  118300  218300  318300\
    \ \ For the alignments to: American Alligator, Medium Ground Finch, Tasmanian Devil, Opossum, Platypus, Chicken,\ Zebra Finch, Lizard, X. tropicalis, Stickleback, Fugu, Zebrafish, Tetraodon,\ Medaka and Lamprey, chains scoring below a minimum score\ of '5000' were discarded; the remaining chains are displayed\ in this track. The linear gap matrix used with axtChain:
    \ \ 
    -linearGap=loose\
\
tablesize    11\
smallSize   111\
position  1   2   3   11  111  2111  12111  32111  72111  152111  252111\
qGap    325 360 400  450  600  1100   3600   7600  15600   31600   56600\
tGap    325 360 400  450  600  1100   3600   7600  15600   31600   56600\
bothGap 625 660 700  750  900  1400   4000   8000  16000   32000   57000\
    \ \ See also: lastz parameters used in these alignments,\ and chain minimum score and gap parameters used in these alignments.\

    \ \

    Net track

    \

    \ Chains were derived from lastz alignments, using the methods\ described on the chain tracks description pages, and sorted with the \ highest-scoring chains in the genome ranked first. The program\ chainNet was then used to place the chains one at a time, trimming them as \ necessary to fit into sections not already covered by a higher-scoring chain. \ During this process, a natural hierarchy emerged in which a chain that filled \ a gap in a higher-scoring chain was placed underneath that chain. The program \ netSyntenic was used to fill in information about the relationship between \ higher- and lower-level chains, such as whether a lower-level\ chain was syntenic or inverted relative to the higher-level chain. \ The program netClass was then used to fill in how much of the gaps and chains \ contained Ns (sequencing gaps) in one or both species and how much\ was filled with transposons inserted before and after the two organisms \ diverged.

    \ \

    Credits

    \

    \ Lastz (previously known as blastz) was developed at\ Pennsylvania State University by \ Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from\ Ross Hardison.

    \

    \ Lineage-specific repeats were identified by Arian Smit and his \ RepeatMasker\ program.

    \

    \ The axtChain program was developed at the University of California at \ Santa Cruz by Jim Kent with advice from Webb Miller and David Haussler.

    \

    \ The browser display and database storage of the chains and nets were created\ by Robert Baertsch and Jim Kent.

    \

    \ The chainNet, netSyntenic, and netClass programs were\ developed at the University of California\ Santa Cruz by Jim Kent.

    \

    \ \

    References

    \

    \ Chiaromonte F, Yap VB, Miller W.\ Scoring pairwise genomic sequence alignments.\ Pac Symp Biocomput. 2002:115-26.\ PMID: 11928468\

    \ \

    \ Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\ Evolution's cauldron:\ duplication, deletion, and rearrangement in the mouse and human genomes.\ Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9.\ PMID: 14500911; PMC: PMC208784\

    \ \

    \ Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC,\ Haussler D, Miller W.\ Human-mouse alignments with BLASTZ.\ Genome Res. 2003 Jan;13(1):103-7.\ PMID: 12529312; PMC: PMC430961\

    \ compGeno 1 altColor 255,255,0\ chainLinearGap loose\ chainMinScore 5000\ color 0,0,0\ compositeTrack on\ configurable on\ dimensions dimensionX=clade dimensionY=species\ dragAndDrop subTracks\ group compGeno\ html vertebrateChainNet\ longLabel Non-placental Vertebrate Genomes, Chain and Net Alignments\ noInherit on\ priority 9\ shortLabel Vertebrate Chain/Net\ sortOrder species=+ view=+ clade=+\ subGroup1 view Views chain=Chains net=Nets\ subGroup2 species Species s000=Wallaby s001=Wallaby s002=Tasmanian_devil s003=Opossum s004a=Platypus s004b=Platypus s005=Platypus s006=Turkey s007a=Turkey s007b=Japanese_quail s008a=Chicken s008b=Chicken s009=Chicken s010=Chicken s011=Mallard_duck s012=Scarlet_macaw s013=Medium_ground_finch s014=White-throated_sparrow s015=Collared_flycatcher s016=Golden_eagle s017=Peregrine_falcon s018=Saker_falcon s019=Rock_pigeon s020=Parrot s021=Budgerigar s022=Tibetan_ground_jay s023=Zebra_finch s024=Zebra_finch s025=American_alligator s026=Chinese_alligator s027=Lizard s028=Lizard s028b=Garter_snake s029a=Axolotl s029b=X._tropicalis s029c=X._tropicalis s030=X._tropicalis s031=X._tropicalis s032=X._tropicalis s033=X._tropicalis s034=African_clawed_frog s035=Spiny_softshell_turtle s036=Chinese_softshell_turtle s037=Painted_turtle s038=Painted_turtle s039=Green_seaturtle s040=Coelacanth s041=Spotted_gar s042=Mexican_tetra_(cavefish) s043=Zebrafish s044=Zebrafish s045=Zebrafish s046=Zebrafish s047=Zebrafish s048=Atlantic_cod s049=Stickleback s050=Southern_platyfish s051=Medaka s052=Pundamilia_nyererei s053=Zebra_mbuna s054=Princess_of_Burundi s055=Burton's_mouthbreeder s056=Nile_tilapia s057=Nile_tilapia s058=Nile_tilapia s059=Yellowbelly_pufferfish s060=Fugu s061=Fugu s062=Tetraodon s063=Tetraodon s064a=Lamprey s064b=Lamprey s065=Lamprey s066=Arctic_lamprey\ subGroup3 clade Clade c00=mammalia c01=dinosauria c02=lepidosauria c03=amphibia c04=cryptodira c05=coelancanthimorpha c06=neopterygii c07=hyperoartia\ track vertebrateChainNet\ type bed 3\ visibility hide\ netThaSir1 thaSir1 Net netAlign anoCar1 chainAnoCar1 Garter snake (Jun. 2015 (Thamnophis_sirtalis-6.0/thaSir1)) Alignment Net 1 10 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Garter snake (Jun. 2015 (Thamnophis_sirtalis-6.0/thaSir1)) Alignment Net\ otherDb thaSir1\ parent vertebrateChainNetViewnet off\ shortLabel thaSir1 Net\ subGroups view=net species=s028b clade=c02\ track netThaSir1\ type netAlign anoCar1 chainAnoCar1\ netNomLeu3 Gibbon Net netAlign nomLeu3 chainNomLeu3 Gibbon (Oct. 2012 (GGSC Nleu3.0/nomLeu3)) Alignment Net 1 10 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Gibbon (Oct. 2012 (GGSC Nleu3.0/nomLeu3)) Alignment Net\ otherDb nomLeu3\ parent primateChainNetViewnet off\ shortLabel Gibbon Net\ subGroups view=net species=s014 clade=c00\ track netNomLeu3\ type netAlign nomLeu3 chainNomLeu3\ netRn7 Rat Net netAlign rn7 chainRn7 Rat (Nov. 2020 (mRatBN7.2/rn7)) Alignment Net 1 10 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Rat (Nov. 2020 (mRatBN7.2/rn7)) Alignment Net\ otherDb rn7\ parent placentalChainNetViewnet on\ shortLabel Rat Net\ subGroups view=net species=s024a clade=c00\ track netRn7\ type netAlign rn7 chainRn7\ encTfChipPkENCFF615GTV A549 CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in A549 from ENCODE 3 (ENCFF615GTV) 0 10 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in A549 from ENCODE 3 (ENCFF615GTV)\ parent encTfChipPk off\ shortLabel A549 CTCF 2\ subGroups cellType=A549 factor=CTCF\ track encTfChipPkENCFF615GTV\ cloneEndABC22 ABC22 bed 12 Agencourt fosmid library 22 0 10 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 22\ parent cloneEndSuper off\ priority 10\ shortLabel ABC22\ subGroups source=agencourt\ track cloneEndABC22\ type bed 12\ visibility hide\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep3LK6_CNhs13568_tpm_rev AorticSmsToFgf2_00hr15minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep3 (LK6)_CNhs13568_12839-137B4_reverse 1 10 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12839-137B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep3%20%28LK6%29.CNhs13568.12839-137B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep3 (LK6)_CNhs13568_12839-137B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12839-137B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep3LK6_CNhs13568_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12839-137B4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep3LK6_CNhs13568_ctss_rev AorticSmsToFgf2_00hr15minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep3 (LK6)_CNhs13568_12839-137B4_reverse 0 10 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12839-137B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep3%20%28LK6%29.CNhs13568.12839-137B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep3 (LK6)_CNhs13568_12839-137B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12839-137B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep3LK6_CNhs13568_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12839-137B4\ urlLabel FANTOM5 Details:\ bismap36Quantitative Bismap M36 bigWig 0.027778 1.00 Multi-read mappability with 36-mers after bisulfite conversion 0 10 240 70 80 247 162 167 0 0 0 map 0 bigDataUrl /gbdb/hg38/hoffmanMappability/k36.Bismap.MultiTrackMappability.bw\ color 240,70,80\ longLabel Multi-read mappability with 36-mers after bisulfite conversion\ parent bismapBigWig off\ priority 10\ shortLabel Bismap M36\ subGroups view=MR\ track bismap36Quantitative\ type bigWig 0.027778 1.00\ visibility hide\ gtexCovBrainCaudatebasalganglia Brain Caud bas gangl bigWig Brain Caudate basal ganglia 0 10 238 238 0 246 246 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1HGF4-0011-R5b-SM-CM2ST.Brain_Caudate_basal_ganglia.RNAseq.bw\ color 238,238,0\ longLabel Brain Caudate basal ganglia\ parent gtexCov\ shortLabel Brain Caud bas gangl\ track gtexCovBrainCaudatebasalganglia\ GBM GBM bigLolly 12 + Glioblastoma multiforme 0 10 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/GBM.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Glioblastoma multiforme\ parent gdcCancer off\ priority 10\ shortLabel GBM\ track GBM\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ gnomadConstraint gnomAD Mut Constraint bigWig Genome Aggregation Database (gnomAD) non-coding constraint of haploinsufficient variation (Gnocchi), includes chrX 0 10 150 0 0 0 150 0 0 0 0

    Description

    \

    \ The gnomAD v3.1 track shows variants from 76,156 whole genomes (and no exomes), all mapped to the\ GRCh38/hg38 reference sequence. 4,454 genomes were added to the number of genomes in the previous\ v3 release. For more detailed information on gnomAD v3.1, see the related blog post.

    \ \

    \ The gnomAD v3.1.1 track contains the same underlying data as v3.1, but\ with minor corrections to the VEP annotations and dbSNP rsIDs. On the UCSC side, we have now\ included the mitochondrial chromosome data that was released as part of gnomAD v3.1 (but after\ the UCSC version of the track was released). For more information about gnomAD v3.1.1, please\ see the related\ changelog.

    \ \

    GnomAD Genome Mutational Constraint is based on v3.1.2 and is available only on hg38. \ It shows the reduced variation caused by purifying\ natural selection. This is similar to negative selection on loss-of-function\ (LoF) for genes, but can be calculated for non-coding regions too. \ Positive values are red and reflect stronger mutation constraint (and less variation), indicating \ higher natural selection pressure in a region. Negative values are green and \ reflect lower mutation constraint \ (and more variation), indicating less selection pressure and less functional effect.\ Briefly, for any 1kbp window in\ the genome, a model based on trinucleotide sequence context, base-level\ methylation, and regional genomic features predicts expected number of mutations,\ and compares this number to the observed number of mutations using a Z-score (see preprint\ in the Reference section for details). The chrX scores were added as received from the authors,\ as there are no de novo mutation data available on chrX (for estimating the effects of regional \ genomic features on mutation rates), they are more speculative than the ones on the autosomes.

    \ \

    \ The gnomAD Predicted Constraint Metrics track contains metrics of pathogenicity per-gene as \ predicted for gnomAD v2.1.1 and identifies genes subject to strong selection against various \ classes of mutation. This includes data on both the gene and transcript level.

    \ \

    \ The gnomAD v2 tracks show variants from 125,748 exomes and 15,708 whole genomes, all mapped to\ the GRCh37/hg19 reference sequence and lifted to the GRCh38/hg38 assembly. The data originate\ from 141,456 unrelated individuals sequenced as part of various population-genetic and\ disease-specific studies\ collected by the Genome Aggregation Database (gnomAD), release 2.1.1.\ Raw data from all studies have been reprocessed through a unified pipeline and jointly\ variant-called to increase consistency across projects. For more information on the processing\ pipeline and population annotations, see the following blog post\ and the 2.1.1 README.

    \

    \ gnomAD v2 data are based on the GRCh37/hg19 assembly. These tracks display the\ GRCh38/hg38 lift-over provided by gnomAD on their downloads site.\

    \ \

    \ For questions on the gnomAD data, also see the gnomAD FAQ.

    \

    \ More details on the Variant type(s) can be found on the Sequence Ontology page.

    \ \

    Display Conventions and Configuration

    \

    gnomAD v3.1.1

    \

    \ The gnomAD v3.1.1 track version follows the same conventions and configuration as the v3.1 track,\ except as noted below.

    \ \
      \
    1. There is a Non-cancer filter used to exclude/include variants from samples of individuals who\ were not ascertained for having cancer in a cancer study.\
    2. There are additional FILTER field filters: AS_VQSR, indel_stack (chrM only), and npg (chrM only).\
    3. Where possible, variants overlapping multiple transcripts/genes have been collapsed into one\ variant, with additional information available on the details page, which has roughly halved the\ number of items in the bigBed.\
    4. The bigBed has been split into two files, one with the information necessary for the track\ display, and one with the information necessary for the details page. For more information on\ this data format, please see the Data Access section below.\
    5. The VEP annotation is shown as a table instead of spread across multiple fields.\
    6. Intergenic variants have not been pre-filtered.\
    \ \

    gnomAD v3.1

    \

    \ By default, a maximum of 50,000 variants can be displayed at a time (before applying the filters\ described below), before the track switches to dense display mode.\

    \ \

    \ Mouse hover on an item will display many details about each variant, including the affected gene(s),\ the variant type, and annotation (missense, synonymous, etc).\

    \ \

    \ Clicking on an item will display additional details on the variant, including a population frequency\ table showing allele count in each sub-population.\

    \ \

    \ Following the conventions on the gnomAD browser, items are shaded according to their Annotation\ type:\ \ \ \ \ \
    pLoF
    Missense
    Synonymous
    Other
    \

    \ \

    Label Options

    \

    \ To maintain consistency with the gnomAD website, variants are by default labeled according\ to their chromosomal start position followed by the reference and alternate alleles,\ for example "chr1-1234-T-CAG". dbSNP rsID's are also available as an additional\ label, if the variant is present in dbSnp.\

    \ \

    Filtering Options

    \

    \ Three filters are available for these tracks:\

    \
      \
    • FILTER: Used to exclude/include variants that failed Random Forest\ (RF), Inbreeding Coefficient (Inbreeding Coeff), or Allele Count (AC0) filters. The\ PASS option is used to include/exclude variants that pass all of the RF,\ InbreedingCoeff, and AC0 filters, as denoted in the original VCF.\
    • Annotation type: Used to exclude/include variants that are annotated as\ Probability Loss of Function (pLoF), Missense, Synonymous, or Other, as\ annotated by VEP version 85 (GENCODE v19).\
    • Variant Type: Used to exclude/include variants according to the type of\ variation, as annotated by VEP v85.\
    \ There is one additional configurable filter on the minimum minor allele frequency.\ \

    gnomAD v2.1.1

    \

    \ The gnomAD v2.1.1 track follows the standard display and configuration options available for\ VCF tracks, briefly explained below.\

    \
      \
    • In mode, a vertical line is drawn at the position of\ each variant.
      • \
    • In mode, "ref" and "alt" alleles are\ displayed to the left of a vertical line with colored portions corresponding to allele counts.\ Hovering the mouse pointer over a variant pops up a display of alleles and counts.
      • \
    \ \

    Filtering Options

    \

    \ Four filters are available for these tracks, the same as the underlying VCF:\

      \
    • AC0: Allele Count 0 after filtering out low confidence genotypes (GQ < 20; DP < 10; and AB < 0.2 for het calls))\
    • InbreedingCoeff: Inbreeding Coefficient < -0.3\
    • RF: Used to exclude/include variants that failed Random Forest filtering thresholds of 0.055272738028512555, 0.20641025579497013 (probabilities of being a true positive variant) for SNPs, indels)\
    • Pass: Variant passes all 3 filters\
    \

    \ \

    \ There are two additional filters available, one for the minimum minor allele frequency, and a configurable filter on the QUAL score.\

    \ \ \

    UCSC Methods

    \

    \ The gnomAD v3.1.1 data is unfiltered.

    \

    \ For the v3.1 update only, in order to cut \ down on the amount of displayed data, the following variant\ types have been filtered out, but are still viewable in the gnomAD browser:\

      \
    • Regulatory Region Variants\
    • Downstream/Upstream Gene Variants\
    • Transcription Factor Binding Site Variants\
    \

    \ \

    \ For the full steps used to create the track at UCSC, please see the section\ denoted "gnomAD v3.1 update" in the hg38 makedoc.\

    \ \ \

    Data Access

    \ \

    \ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that\ can be downloaded from our download server, subject\ to the conditions set forth by the gnomAD consortium (see below). Variant VCFs can be found in the\ vcf/ subdirectory. The\ v3.1 and\ v3.1.1 variants can\ be found in a special directory as they have been transformed from the underlying VCF.

    \ \

    \ For the v3.1.1 variants in particular, the underlying bigBed only contains enough information\ necessary to use the track in the browser. The extra data like VEP annotations and CADD scores are\ available in the same directory\ as the bigBed but in the files gnomad.v3.1.1.details.tab.gz and\ gnomad.v3.1.1.details.tab.gz.gzi. The gnomad.v3.1.1.details.tab.gz contains the gzip\ compressed extra data in JSON format, and the .gzi file is available to speed searching of\ this data. Each variant has an associated md5sum in the name field of the bigBed which can be\ used along with the _dataOffset and _dataLen fields to get the associated external data, as show\ below:\ 

    \
# find item of interest:\
bigBedToBed genomes.bb stdout | head -4 | tail -1\
chr1    12416    12417    854246d79dc5d02dcdbd5f5438542b6e    [..omitted for brevity..]    chr1-12417-G-A    67293    902\
\
# use the final two fields, _dataOffset and _dataLen (add one to _dataLen to include a newline), to get the extra data:\
bgzip -b 67293 -s 903 gnomad.v3.1.1.details.tab.gz\
854246d79dc5d02dcdbd5f5438542b6e    {"DDX11L1": {"cons": ["non_coding_transcript_variant",  [..omitted for brevity..]\
    \ \

    \ The data can also be found directly from the gnomAD downloads page. Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.

    \ \

    The mutational constraints score was updated in October 2022 from a previous,\ now deprecated, pre-publication version. The old version can be found in our\ archive\ directory on the download server. It can be loaded by copying the URL into\ our "Custom tracks" input box.

    \ \

    Credits

    \

    \ Thanks to the Genome Aggregation\ Database Consortium for making these data available. The data are released under the ODC Open Database License\ (ODbL) as described here.\

    \ \

    References

    \ \

    \ Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alfoldi J, Wang Q, Collins RL, Laricchia KM,\ Ganna A, Birnbaum DP et al.\ Variation across\ 141,456 human exomes and genomes reveals the spectrum of loss-of-function intolerance across human\ protein-coding genes. doi: https://doi.org/10.1101/531210.\

    \

    \ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ Analysis of protein-coding\ genetic variation in 60,706 humans. Nature. 2016 Aug 17;536(7616):285-91.\ PMID: 27535533;\ PMC: PMC5018207\

    \

    \ Chen S, Francioli L, Goodrich J, Collins R, Wang Q, Alfoldi J, Watts N, Vittal C, Gauthier L, Poterba T, Wilson M\ \ A genome-wide mutational constraint map quantified from variation in 76,156 human genomes. Biorxiv 2022 \

    \ varRep 0 altColor 0,150,0\ autoScale on\ bigDataUrl /gbdb/hg38/gnomAD/mutConstraint/mutConstraint.bw\ color 150,0,0\ dataVersion Release 3.1.2 (October 22, 2021)\ html gnomadV3_1_1\ longLabel Genome Aggregation Database (gnomAD) non-coding constraint of haploinsufficient variation (Gnocchi), includes chrX\ maxHeightPixels 128:40:8\ parent gnomadVariants on\ priority 10\ shortLabel gnomAD Mut Constraint\ track gnomadConstraint\ type bigWig\ viewLimitsMax -3:3\ wgEncodeRegDnaseUwHffmycPeak HFF-Myc Pk narrowPeak HFF-Myc foreskin fibroblast cell line, cMyc DNaseI Peaks from ENCODE 1 10 255 165 85 255 210 170 1 0 0 regulation 1 color 255,165,85\ longLabel HFF-Myc foreskin fibroblast cell line, cMyc DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HFF-Myc Pk\ subGroups view=a_Peaks cellType=HFF-Myc treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwHffmycPeak\ wgEncodeRegDnaseUwHffmycWig HFF-Myc Sg bigWig 0 23416.2 HFF-Myc foreskin fibroblast cell line, cMyc DNaseI Signal from ENCODE 0 10 255 165 85 255 210 170 0 0 0 regulation 1 color 255,165,85\ longLabel HFF-Myc foreskin fibroblast cell line, cMyc DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.08427\ shortLabel HFF-Myc Sg\ subGroups cellType=HFF-Myc treatment=n_a tissue=skin cancer=normal\ table wgEncodeRegDnaseUwHffmycSignal\ track wgEncodeRegDnaseUwHffmycWig\ type bigWig 0 23416.2\ netHprcGCA_018505825v1 HG02109.mat netAlign GCA_018505825.1 chainHprcGCA_018505825v1 HG02109.mat HG02109.pri.mat.f1_v2 (May 2021 GCA_018505825.1_HG02109.pri.mat.f1_v2) HPRC project computed Chain Nets 1 10 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02109.mat HG02109.pri.mat.f1_v2 (May 2021 GCA_018505825.1_HG02109.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018505825.1\ parent hprcChainNetViewnet off\ priority 25\ shortLabel HG02109.mat\ subGroups view=net sample=s025 population=afr subpop=acb hap=mat\ track netHprcGCA_018505825v1\ type netAlign GCA_018505825.1 chainHprcGCA_018505825v1\ lincRNAsCThLF_r2 hLF_r2 bed 5 + lincRNAs from hlf_r2 1 10 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from hlf_r2\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel hLF_r2\ subGroups view=lincRNAsRefseqExp tissueType=hlf_r2\ track lincRNAsCThLF_r2\ unipMut Mutations bigBed 12 + UniProt Amino Acid Mutations 1 10 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg38/uniprot/unipMut.bb\ longLabel UniProt Amino Acid Mutations\ parent uniprot\ priority 10\ shortLabel Mutations\ track unipMut\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#pathology_and_biotech" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$" variationId="http://www.uniprot.org/uniprot/$$"\ visibility dense\ iscaPathLossCum Path Loss bedGraph 4 ClinGen CNVs: Pathogenic Loss Coverage 2 10 200 0 0 227 127 127 0 0 0 phenDis 0 color 200,0,0\ longLabel ClinGen CNVs: Pathogenic Loss Coverage\ parent iscaViewTotal\ shortLabel Path Loss\ subGroups view=cov class=path level=sub\ track iscaPathLossCum\ SeqCap-EZ_MedExomePlusMito_hg19_empirical_targets SeqCap EZ Med+Mito T bigBed Roche - SeqCap EZ MedExome + Mito Empirical Target Regions 0 10 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/SeqCap_EZ_MedExomePlusMito_hg38_empirical_targets.bb\ color 100,143,255\ longLabel Roche - SeqCap EZ MedExome + Mito Empirical Target Regions\ parent exomeProbesets on\ shortLabel SeqCap EZ Med+Mito T\ track SeqCap-EZ_MedExomePlusMito_hg19_empirical_targets\ type bigBed\ transMapEnsemblV5 TransMap Ensembl bigPsl TransMap Ensembl and GENCODE Mappings Version 5 3 10.001 0 100 0 127 177 127 0 0 0

    Description

    \ \

    \ This track contains GENCODE or Ensembl alignments produced by\ the TransMap cross-species alignment algorithm from other vertebrate\ species in the UCSC Genome Browser. GENCODE is Ensembl for human and mouse,\ for other Ensembl sources, only ones with full gene builds are used.\ Projection Ensembl gene annotations will not be used as sources.\ For closer evolutionary distances, the alignments are created using\ syntenically filtered BLASTZ alignment chains, resulting in a prediction of the\ orthologous genes in human.\

    \ \ \

    Display Conventions and Configuration

    \ \

    \ This track follows the display conventions for \ PSL alignment tracks.

    \

    \ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare cDNAs against the genomic sequence. For more \ information about this option, click \ here.\ Several types of alignment gap may also be colored; \ for more information, click \ here.\ \

    Methods

    \ \

    \

      \
    1. Source transcript alignments were obtained from vertebrate organisms\ in the UCSC Genome Browser Database. BLAT alignments of RefSeq Genes, GenBank \ mRNAs, and GenBank Spliced ESTs to the cognate genome, along with UCSC Genes,\ were used as available.\
    2. For all vertebrate assemblies that had BLASTZ alignment chains and\ nets to the human (hg38) genome, a subset of the alignment chains were\ selected as follows:\
        \
      • For organisms whose branch distance was no more than 0.5\ (as computed by phyloFit, see Conservation track description for details),\ syntenic filtering was used. Reciprocal best nets were used if available;\ otherwise, nets were selected with the netfilter -syn command.\ The chains corresponding to the selected nets were used for mapping.\
      • For more distant species, where the determination of synteny is difficult,\ the full set of chains was used for mapping. This allows for more genes to\ map at the expense of some mapping to paralogous regions. The\ post-alignment filtering step removes some of the duplications.\
      \
    3. The pslMap program was used to do a base-level projection of\ the source transcript alignments via the selected chains\ to the human genome, resulting in pairwise alignments of the source transcripts to\ the genome.\
    4. The resulting alignments were filtered with pslCDnaFilter\ with a global near-best criteria of 0.5% in finished genomes\ (human and mouse) and 1.0% in other genomes. Alignments\ where less than 20% of the transcript mapped were discarded.\
    \

    \ \

    \ To ensure unique identifiers for each alignment, cDNA and gene accessions were\ made unique by appending a suffix for each location in the source genome and\ again for each mapped location in the destination genome. The format is:\ 

    \
   accession.version-srcUniq.destUniq\
    \ \ Where srcUniq is a number added to make each source alignment unique, and\ destUniq is added to give the subsequent TransMap alignments unique\ identifiers.\

    \

    \ For example, in the cow genome, there are two alignments of mRNA BC149621.1.\ These are assigned the identifiers BC149621.1-1 and BC149621.1-2.\ When these are mapped to the human genome, BC149621.1-1 maps to a single\ location and is given the identifier BC149621.1-1.1. However, BC149621.1-2\ maps to two locations, resulting in BC149621.1-2.1 and BC149621.1-2.2. Note\ that multiple TransMap mappings are usually the result of tandem duplications, where both\ chains are identified as syntenic.\

    \ \

    Data Access

    \ \

    \ The raw data for these tracks can be accessed interactively through the\ Table Browser or the\ Data Integrator.\ For automated analysis, the annotations are stored in\ bigPsl files (containing a\ number of extra columns) and can be downloaded from our\ download server, \ or queried using our API. For more \ information on accessing track data see our \ Track Data Access FAQ.\ The files are associated with these tracks in the following way:\

      \
    • TransMap Ensembl - hg38.ensembl.transMapV4.bigPsl
      • \
    • TransMap RefGene - hg38.refseq.transMapV4.bigPsl
      • \
    • TransMap RNA - hg38.rna.transMapV4.bigPsl
      • \
    • TransMap ESTs - hg38.est.transMapV4.bigPsl
      • \
    \ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed which can be compiled from the source code or downloaded as\ a precompiled binary for your system. Instructions for downloading source code and\ binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, for example:\

    \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/transMap/V4/hg38.refseq.transMapV4.bigPsl\ -chrom=chr6 -start=0 -end=1000000 stdout\ \ \

    Credits

    \ \

    \ This track was produced by Mark Diekhans at UCSC from cDNA and EST sequence data\ submitted to the international public sequence databases by \ scientists worldwide and annotations produced by the RefSeq,\ Ensembl, and GENCODE annotations projects.

    \ \

    References

    \

    \ Siepel A, Diekhans M, Brejová B, Langton L, Stevens M, Comstock CL, Davis C, Ewing B, Oommen S,\ Lau C et al.\ \ Targeted discovery of novel human exons by comparative genomics.\ Genome Res. 2007 Dec;17(12):1763-73.\ PMID: 17989246; PMC: PMC2099585\

    \ \

    \ Stanke M, Diekhans M, Baertsch R, Haussler D.\ \ Using native and syntenically mapped cDNA alignments to improve de novo gene finding.\ Bioinformatics. 2008 Mar 1;24(5):637-44.\ PMID: 18218656\

    \ \

    \ Zhu J, Sanborn JZ, Diekhans M, Lowe CB, Pringle TH, Haussler D.\ \ Comparative genomics search for losses of long-established genes on the human lineage.\ PLoS Comput Biol. 2007 Dec;3(12):e247.\ PMID: 18085818; PMC: PMC2134963\

    \ \ genes 1 baseColorDefault diffCodons\ baseColorUseCds given\ baseColorUseSequence lfExtra\ bigDataUrl /gbdb/hg38/transMap/V5/hg38.ensembl.transMapV5.bigPsl\ canPack on\ color 0,100,0\ defaultLabelFields orgAbbrev,geneName\ group genes\ html transMapEnsembl\ indelDoubleInsert on\ indelQueryInsert on\ labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName,geneId,geneType,transcriptType\ labelSeparator " "\ longLabel TransMap Ensembl and GENCODE Mappings Version 5\ priority 10.001\ searchIndex name,srcTransId,geneName,geneId\ shortLabel TransMap Ensembl\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ superTrack transMapV5 pack\ track transMapEnsemblV5\ transMapSrcSet ensembl\ type bigPsl\ visibility pack\ transMapRefSeqV5 TransMap RefGene bigPsl TransMap RefSeq Gene Mappings Version 5 3 10.003 0 100 0 127 177 127 0 0 0

    Description

    \ \

    \ This track contains RefSeq Gene alignments produced by\ the TransMap cross-species alignment algorithm\ from other vertebrate species in the UCSC Genome Browser.\ For closer evolutionary distances, the alignments are created using\ syntenically filtered BLASTZ alignment chains, resulting in a prediction of the\ orthologous genes in human.\

    \ \ \

    Display Conventions and Configuration

    \ \

    \ This track follows the display conventions for \ PSL alignment tracks.

    \

    \ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare cDNAs against the genomic sequence. For more \ information about this option, click \ here.\ Several types of alignment gap may also be colored; \ for more information, click \ here.\ \

    Methods

    \ \

    \

      \
    1. Source transcript alignments were obtained from vertebrate organisms\ in the UCSC Genome Browser Database. BLAT alignments of RefSeq Genes, GenBank \ mRNAs, and GenBank Spliced ESTs to the cognate genome, along with UCSC Genes,\ were used as available.\
    2. For all vertebrate assemblies that had BLASTZ alignment chains and\ nets to the human (hg38) genome, a subset of the alignment chains were\ selected as follows:\
        \
      • For organisms whose branch distance was no more than 0.5\ (as computed by phyloFit, see Conservation track description for details),\ syntenic filtering was used. Reciprocal best nets were used if available;\ otherwise, nets were selected with the netfilter -syn command.\ The chains corresponding to the selected nets were used for mapping.\
      • For more distant species, where the determination of synteny is difficult,\ the full set of chains was used for mapping. This allows for more genes to\ map at the expense of some mapping to paralogous regions. The\ post-alignment filtering step removes some of the duplications.\
      \
    3. The pslMap program was used to do a base-level projection of\ the source transcript alignments via the selected chains\ to the human genome, resulting in pairwise alignments of the source transcripts to\ the genome.\
    4. The resulting alignments were filtered with pslCDnaFilter\ with a global near-best criteria of 0.5% in finished genomes\ (human and mouse) and 1.0% in other genomes. Alignments\ where less than 20% of the transcript mapped were discarded.\
    \

    \ \

    \ To ensure unique identifiers for each alignment, cDNA and gene accessions were\ made unique by appending a suffix for each location in the source genome and\ again for each mapped location in the destination genome. The format is:\ 

    \
   accession.version-srcUniq.destUniq\
    \ \ Where srcUniq is a number added to make each source alignment unique, and\ destUniq is added to give the subsequent TransMap alignments unique\ identifiers.\

    \

    \ For example, in the cow genome, there are two alignments of mRNA BC149621.1.\ These are assigned the identifiers BC149621.1-1 and BC149621.1-2.\ When these are mapped to the human genome, BC149621.1-1 maps to a single\ location and is given the identifier BC149621.1-1.1. However, BC149621.1-2\ maps to two locations, resulting in BC149621.1-2.1 and BC149621.1-2.2. Note\ that multiple TransMap mappings are usually the result of tandem duplications, where both\ chains are identified as syntenic.\

    \ \

    Data Access

    \ \

    \ The raw data for these tracks can be accessed interactively through the\ Table Browser or the\ Data Integrator.\ For automated analysis, the annotations are stored in\ bigPsl files (containing a\ number of extra columns) and can be downloaded from our\ download server, \ or queried using our API. For more \ information on accessing track data see our \ Track Data Access FAQ.\ The files are associated with these tracks in the following way:\

      \
    • TransMap Ensembl - hg38.ensembl.transMapV4.bigPsl
      • \
    • TransMap RefGene - hg38.refseq.transMapV4.bigPsl
      • \
    • TransMap RNA - hg38.rna.transMapV4.bigPsl
      • \
    • TransMap ESTs - hg38.est.transMapV4.bigPsl
      • \
    \ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed which can be compiled from the source code or downloaded as\ a precompiled binary for your system. Instructions for downloading source code and\ binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, for example:\

    \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/transMap/V4/hg38.refseq.transMapV4.bigPsl\ -chrom=chr6 -start=0 -end=1000000 stdout\ \ \

    Credits

    \ \

    \ This track was produced by Mark Diekhans at UCSC from cDNA and EST sequence data\ submitted to the international public sequence databases by \ scientists worldwide and annotations produced by the RefSeq,\ Ensembl, and GENCODE annotations projects.

    \ \

    References

    \

    \ Siepel A, Diekhans M, Brejová B, Langton L, Stevens M, Comstock CL, Davis C, Ewing B, Oommen S,\ Lau C et al.\ \ Targeted discovery of novel human exons by comparative genomics.\ Genome Res. 2007 Dec;17(12):1763-73.\ PMID: 17989246; PMC: PMC2099585\

    \ \

    \ Stanke M, Diekhans M, Baertsch R, Haussler D.\ \ Using native and syntenically mapped cDNA alignments to improve de novo gene finding.\ Bioinformatics. 2008 Mar 1;24(5):637-44.\ PMID: 18218656\

    \ \

    \ Zhu J, Sanborn JZ, Diekhans M, Lowe CB, Pringle TH, Haussler D.\ \ Comparative genomics search for losses of long-established genes on the human lineage.\ PLoS Comput Biol. 2007 Dec;3(12):e247.\ PMID: 18085818; PMC: PMC2134963\

    \ \ genes 1 baseColorDefault diffCodons\ baseColorUseCds given\ baseColorUseSequence lfExtra\ bigDataUrl /gbdb/hg38/transMap/V5/hg38.refseq.transMapV5.bigPsl\ canPack on\ color 0,100,0\ defaultLabelFields orgAbbrev,geneName\ group genes\ html transMapRefSeq\ indelDoubleInsert on\ indelQueryInsert on\ labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName,geneId\ labelSeparator " "\ longLabel TransMap RefSeq Gene Mappings Version 5\ priority 10.003\ searchIndex name,srcTransId,geneName,geneId\ shortLabel TransMap RefGene\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ superTrack transMapV5 pack\ track transMapRefSeqV5\ transMapSrcSet refseq\ type bigPsl\ visibility pack\ transMapRnaV5 TransMap RNA bigPsl TransMap GenBank RNA Mappings Version 5 0 10.004 0 100 0 127 177 127 0 0 0

    Description

    \ \

    \ This track contains GenBank mRNA alignments produced by\ the TransMap cross-species alignment algorithm\ from other vertebrate species in the UCSC Genome Browser.\ For closer evolutionary distances, the alignments are created using\ syntenically filtered BLASTZ alignment chains, resulting in a prediction of the\ orthologous genes in human.\

    \ \ \

    Display Conventions and Configuration

    \ \

    \ This track follows the display conventions for \ PSL alignment tracks.

    \

    \ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare cDNAs against the genomic sequence. For more \ information about this option, click \ here.\ Several types of alignment gap may also be colored; \ for more information, click \ here.\ \

    Methods

    \ \

    \

      \
    1. Source transcript alignments were obtained from vertebrate organisms\ in the UCSC Genome Browser Database. BLAT alignments of RefSeq Genes, GenBank \ mRNAs, and GenBank Spliced ESTs to the cognate genome, along with UCSC Genes,\ were used as available.\
    2. For all vertebrate assemblies that had BLASTZ alignment chains and\ nets to the human (hg38) genome, a subset of the alignment chains were\ selected as follows:\
        \
      • For organisms whose branch distance was no more than 0.5\ (as computed by phyloFit, see Conservation track description for details),\ syntenic filtering was used. Reciprocal best nets were used if available;\ otherwise, nets were selected with the netfilter -syn command.\ The chains corresponding to the selected nets were used for mapping.\
      • For more distant species, where the determination of synteny is difficult,\ the full set of chains was used for mapping. This allows for more genes to\ map at the expense of some mapping to paralogous regions. The\ post-alignment filtering step removes some of the duplications.\
      \
    3. The pslMap program was used to do a base-level projection of\ the source transcript alignments via the selected chains\ to the human genome, resulting in pairwise alignments of the source transcripts to\ the genome.\
    4. The resulting alignments were filtered with pslCDnaFilter\ with a global near-best criteria of 0.5% in finished genomes\ (human and mouse) and 1.0% in other genomes. Alignments\ where less than 20% of the transcript mapped were discarded.\
    \

    \ \

    \ To ensure unique identifiers for each alignment, cDNA and gene accessions were\ made unique by appending a suffix for each location in the source genome and\ again for each mapped location in the destination genome. The format is:\ 

    \
   accession.version-srcUniq.destUniq\
    \ \ Where srcUniq is a number added to make each source alignment unique, and\ destUniq is added to give the subsequent TransMap alignments unique\ identifiers.\

    \

    \ For example, in the cow genome, there are two alignments of mRNA BC149621.1.\ These are assigned the identifiers BC149621.1-1 and BC149621.1-2.\ When these are mapped to the human genome, BC149621.1-1 maps to a single\ location and is given the identifier BC149621.1-1.1. However, BC149621.1-2\ maps to two locations, resulting in BC149621.1-2.1 and BC149621.1-2.2. Note\ that multiple TransMap mappings are usually the result of tandem duplications, where both\ chains are identified as syntenic.\

    \ \

    Data Access

    \ \

    \ The raw data for these tracks can be accessed interactively through the\ Table Browser or the\ Data Integrator.\ For automated analysis, the annotations are stored in\ bigPsl files (containing a\ number of extra columns) and can be downloaded from our\ download server, \ or queried using our API. For more \ information on accessing track data see our \ Track Data Access FAQ.\ The files are associated with these tracks in the following way:\

      \
    • TransMap Ensembl - hg38.ensembl.transMapV4.bigPsl
      • \
    • TransMap RefGene - hg38.refseq.transMapV4.bigPsl
      • \
    • TransMap RNA - hg38.rna.transMapV4.bigPsl
      • \
    • TransMap ESTs - hg38.est.transMapV4.bigPsl
      • \
    \ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed which can be compiled from the source code or downloaded as\ a precompiled binary for your system. Instructions for downloading source code and\ binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, for example:\

    \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/transMap/V4/hg38.refseq.transMapV4.bigPsl\ -chrom=chr6 -start=0 -end=1000000 stdout\ \ \

    Credits

    \ \

    \ This track was produced by Mark Diekhans at UCSC from cDNA and EST sequence data\ submitted to the international public sequence databases by \ scientists worldwide and annotations produced by the RefSeq,\ Ensembl, and GENCODE annotations projects.

    \ \

    References

    \

    \ Siepel A, Diekhans M, Brejová B, Langton L, Stevens M, Comstock CL, Davis C, Ewing B, Oommen S,\ Lau C et al.\ \ Targeted discovery of novel human exons by comparative genomics.\ Genome Res. 2007 Dec;17(12):1763-73.\ PMID: 17989246; PMC: PMC2099585\

    \ \

    \ Stanke M, Diekhans M, Baertsch R, Haussler D.\ \ Using native and syntenically mapped cDNA alignments to improve de novo gene finding.\ Bioinformatics. 2008 Mar 1;24(5):637-44.\ PMID: 18218656\

    \ \

    \ Zhu J, Sanborn JZ, Diekhans M, Lowe CB, Pringle TH, Haussler D.\ \ Comparative genomics search for losses of long-established genes on the human lineage.\ PLoS Comput Biol. 2007 Dec;3(12):e247.\ PMID: 18085818; PMC: PMC2134963\

    \ \ genes 1 baseColorDefault diffCodons\ baseColorUseCds given\ baseColorUseSequence lfExtra\ bigDataUrl /gbdb/hg38/transMap/V5/hg38.rna.transMapV5.bigPsl\ canPack on\ color 0,100,0\ defaultLabelFields orgAbbrev,srcTransId\ group genes\ html transMapRna\ indelDoubleInsert on\ indelQueryInsert on\ labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName\ labelSeparator " "\ longLabel TransMap GenBank RNA Mappings Version 5\ priority 10.004\ searchIndex name,srcTransId,geneName\ shortLabel TransMap RNA\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ superTrack transMapV5 hide\ track transMapRnaV5\ transMapSrcSet rna\ type bigPsl\ visibility hide\ transMapEstV5 TransMap ESTs bigPsl TransMap EST Mappings Version 5 0 10.005 0 100 0 127 177 127 0 0 0

    Description

    \ \

    \ This track contains GenBank spliced EST alignments produced by\ the TransMap cross-species alignment algorithm\ from other vertebrate species in the UCSC Genome Browser.\ For closer evolutionary distances, the alignments are created using\ syntenically filtered BLASTZ alignment chains, resulting in a prediction of the\ orthologous genes in human.\

    \ \ \

    Display Conventions and Configuration

    \ \

    \ This track follows the display conventions for \ PSL alignment tracks.

    \

    \ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare cDNAs against the genomic sequence. For more \ information about this option, click \ here.\ Several types of alignment gap may also be colored; \ for more information, click \ here.\ \

    Methods

    \ \

    \

      \
    1. Source transcript alignments were obtained from vertebrate organisms\ in the UCSC Genome Browser Database. BLAT alignments of RefSeq Genes, GenBank \ mRNAs, and GenBank Spliced ESTs to the cognate genome, along with UCSC Genes,\ were used as available.\
    2. For all vertebrate assemblies that had BLASTZ alignment chains and\ nets to the human (hg38) genome, a subset of the alignment chains were\ selected as follows:\
        \
      • For organisms whose branch distance was no more than 0.5\ (as computed by phyloFit, see Conservation track description for details),\ syntenic filtering was used. Reciprocal best nets were used if available;\ otherwise, nets were selected with the netfilter -syn command.\ The chains corresponding to the selected nets were used for mapping.\
      • For more distant species, where the determination of synteny is difficult,\ the full set of chains was used for mapping. This allows for more genes to\ map at the expense of some mapping to paralogous regions. The\ post-alignment filtering step removes some of the duplications.\
      \
    3. The pslMap program was used to do a base-level projection of\ the source transcript alignments via the selected chains\ to the human genome, resulting in pairwise alignments of the source transcripts to\ the genome.\
    4. The resulting alignments were filtered with pslCDnaFilter\ with a global near-best criteria of 0.5% in finished genomes\ (human and mouse) and 1.0% in other genomes. Alignments\ where less than 20% of the transcript mapped were discarded.\
    \

    \ \

    \ To ensure unique identifiers for each alignment, cDNA and gene accessions were\ made unique by appending a suffix for each location in the source genome and\ again for each mapped location in the destination genome. The format is:\ 

    \
   accession.version-srcUniq.destUniq\
    \ \ Where srcUniq is a number added to make each source alignment unique, and\ destUniq is added to give the subsequent TransMap alignments unique\ identifiers.\

    \

    \ For example, in the cow genome, there are two alignments of mRNA BC149621.1.\ These are assigned the identifiers BC149621.1-1 and BC149621.1-2.\ When these are mapped to the human genome, BC149621.1-1 maps to a single\ location and is given the identifier BC149621.1-1.1. However, BC149621.1-2\ maps to two locations, resulting in BC149621.1-2.1 and BC149621.1-2.2. Note\ that multiple TransMap mappings are usually the result of tandem duplications, where both\ chains are identified as syntenic.\

    \ \

    Data Access

    \ \

    \ The raw data for these tracks can be accessed interactively through the\ Table Browser or the\ Data Integrator.\ For automated analysis, the annotations are stored in\ bigPsl files (containing a\ number of extra columns) and can be downloaded from our\ download server, \ or queried using our API. For more \ information on accessing track data see our \ Track Data Access FAQ.\ The files are associated with these tracks in the following way:\

      \
    • TransMap Ensembl - hg38.ensembl.transMapV4.bigPsl
      • \
    • TransMap RefGene - hg38.refseq.transMapV4.bigPsl
      • \
    • TransMap RNA - hg38.rna.transMapV4.bigPsl
      • \
    • TransMap ESTs - hg38.est.transMapV4.bigPsl
      • \
    \ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed which can be compiled from the source code or downloaded as\ a precompiled binary for your system. Instructions for downloading source code and\ binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, for example:\

    \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/transMap/V4/hg38.refseq.transMapV4.bigPsl\ -chrom=chr6 -start=0 -end=1000000 stdout\ \ \

    Credits

    \ \

    \ This track was produced by Mark Diekhans at UCSC from cDNA and EST sequence data\ submitted to the international public sequence databases by \ scientists worldwide and annotations produced by the RefSeq,\ Ensembl, and GENCODE annotations projects.

    \ \

    References

    \

    \ Siepel A, Diekhans M, Brejová B, Langton L, Stevens M, Comstock CL, Davis C, Ewing B, Oommen S,\ Lau C et al.\ \ Targeted discovery of novel human exons by comparative genomics.\ Genome Res. 2007 Dec;17(12):1763-73.\ PMID: 17989246; PMC: PMC2099585\

    \ \

    \ Stanke M, Diekhans M, Baertsch R, Haussler D.\ \ Using native and syntenically mapped cDNA alignments to improve de novo gene finding.\ Bioinformatics. 2008 Mar 1;24(5):637-44.\ PMID: 18218656\

    \ \

    \ Zhu J, Sanborn JZ, Diekhans M, Lowe CB, Pringle TH, Haussler D.\ \ Comparative genomics search for losses of long-established genes on the human lineage.\ PLoS Comput Biol. 2007 Dec;3(12):e247.\ PMID: 18085818; PMC: PMC2134963\

    \ \ genes 1 baseColorDefault none\ baseColorUseSequence lfExtra\ bigDataUrl /gbdb/hg38/transMap/V5/hg38.est.transMapV5.bigPsl\ canPack on\ color 0,100,0\ defaultLabelFields orgAbbrev,srcTransId\ group genes\ html transMapEst\ indelDoubleInsert on\ indelQueryInsert on\ labelFields commonName,orgAbbrev,srcDb,srcTransId,name\ labelSeparator " "\ longLabel TransMap EST Mappings Version 5\ priority 10.005\ searchIndex name,srcTransId\ shortLabel TransMap ESTs\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ superTrack transMapV5 hide\ track transMapEstV5\ transMapSrcSet est\ type bigPsl\ visibility hide\ gtexCov GTEx RNA-Seq Coverage bigWig GTEx V8 RNA-Seq Read Coverage by Tissue 0 10.2 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The\ \ NIH Genotype-Tissue Expression (GTEx) project\ determined genetic variation and gene expression in 52 tissues and 2 cell lines\ using RNA-seq data (V8, August 2019), on 17,382 samples from 948 adults.\ This track focuses on the gene expression part. It shows read coverage, from one\ single sample per tissue, selected for high-quality and high read depth.\ The data is summarized to one number per base pair, the number of sequencing\ reads that cover this position. The plot allows finding out if a given exon is\ transcribed primarily in certain tissues and also whether transcription is\ uniform over the length of a single exon.\

    \ \

    Display Conventions

    \

    \ This track follows the display conventions for composite \ "wiggle" tracks. The subtracks, one per tissue, of this track \ may be configured in a variety of ways to highlight different aspects of the \ displayed data. The graphical configuration options are shown at the top of \ the track description page, followed by a list of subtracks. To display only \ selected subtracks, uncheck the boxes next to the tracks you wish to hide. \ For more information about the graphical configuration options, click the \ Graph\ configuration help link.

    \ Tissue colors were assigned to conform to the GTEx Consortium publication conventions.\

    \ \ In Dense mode, the darkness of the grayscale rectangle displayed for the gene reflects the absolute\ read count.\

    \ \

    Methods

    \

    For background information about GTEx sample selection, see our \ GTEx gene expression\ track. In short, samples were sequenced with the Illumina TrueSeq protocol\ on unstranded polyA+ librarires to obtain 76-bp paired end reads with\ HiSeq 2000 and 2500 machines.

    \ \

    \ Sequence reads were aligned to the hg38/GRCh38 human genome using STAR v2.5.3a\ and the GENCODE 26 transcriptome. \ The alignment pipeline is available\ here.\ For further method details, see the \ \ GTEx Portal Documentation page.\

    \ \

    \ To obtain read coverage, the GTEx Laboratory, Data Analysis and Coordinating\ Center (LDACC) at the Broad Institute decided to select a single, high-quality\ representative sample for each tissue type, since aggregated tracks may\ obscure certain features or even introduce some artifacts (e.g. intronic\ coverage). For each tissue, the selected sample has the highest RIN value with\ a high coverage (>80M reads) and exonic rate (>85%). \ The alignment-to-coverage pipeline is available from Github:\ Python script,\ Docker file and \ Pipeline WDL description. \

    \

    To show the exact GTEx sample that was used for each tissue,\ click the "Schema" link on the track configuration page (above), the filename\ under "bigDataUrl" includes the identifier.

    \ \

    Subject and Sample Characteristics

    \

    \ The scientific goal of the GTEx project required that the donors and their biospecimen \ present with no evidence of disease. \ The tissue types collected were chosen based on their clinical significance, logistical \ feasibility and their relevance to the scientific goal of the project and the \ research community. \ Summary plots of GTEx sample characteristics are available at the \ \ GTEx Portal Tissue Summary page.

    \ \

    Data Access

    \

    \ The raw data for the GTEx Read Coverage track can be accessed interactively through the \ Table Browser.\

    \

    \ For automated analysis and downloads, the track data files can be downloaded from \ our downloads server\ or the JSON API.\ Individual regions or the whole genome annotation can be accessed as text using our utility\ bigBedToBed. Instructions for downloading the utility can be found \ here. \ That utility can also be used to obtain features within a given range, e.g. \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/gtex/gtexGeneV8.bb -chrom=chr21\ -start=0 -end=100000000 stdout

    \

    \ Data can also be obtained directly from GTEx at the following link:\ \ https://gtexportal.org/home/datasets

    \ \

    Credits

    \

    \ Statistical analysis and data interpretation was performed by The GTEx Consortium Analysis \ Working Group. \ Data was provided by the GTEx LDACC at The Broad Institute of MIT and Harvard.

    \ \

    References

    \

    \ GTEx Consortium.\ \ The GTEx Consortium atlas of genetic regulatory effects across human tissues.\ Science. 2020 Sep 11;369(6509):1318-1330.\ PMID: 32913098;\ PMC: PMC7737656

    \

    \ \

    \ GTEx Consortium.\ \ The Genotype-Tissue Expression (GTEx) project.\ Nat Genet. 2013 Jun;45(6):580-5.\ PMID: 23715323; \ PMC: PMC4010069

    \ \

    \ Carithers LJ, Ardlie K, Barcus M, Branton PA, Britton A, Buia SA, Compton CC, DeLuca DS, \ Peter-Demchok J, Gelfand ET et al.\ \ A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project.\ Biopreserv Biobank. 2015 Oct;13(5):311-9.\ PMID: 26484571; \ PMC: PMC4675181

    \ \ Melé M, Ferreira PG, Reverter F, DeLuca DS, Monlong J, Sammeth M, Young TR, Goldmann JM,\ Pervouchine DD, Sullivan TJ et al.\ \ Human genomics. The human transcriptome across tissues and individuals.\ Science. 2015 May 8;348(6235):660-5.\ PMID: 25954002; PMC: PMC4547472

    \ \

    \ DeLuca DS, Levin JZ, Sivachenko A, Fennell T, Nazaire MD, Williams C, Reich M, Winckler W, Getz G.\ \ RNA-SeQC: RNA-seq metrics for quality control and process optimization.\ Bioinformatics. 2012 Jun 1;28(11):1530-2.\ PMID: 22539670; PMC: PMC3356847

    \ expression 0 autoScale group\ compositeTrack on\ group expression\ longLabel GTEx V8 RNA-Seq Read Coverage by Tissue\ maxHeightPixels 100:50:8\ priority 10.20\ shortLabel GTEx RNA-Seq Coverage\ track gtexCov\ type bigWig\ ukbDepletion UKB Depl. Rank Score bigWig 0.0 1.0 UK Biobank / deCODE Genetics Depletion Rank Score 1 10.5 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ The "Constraint scores" container track includes several subtracks showing the results of\ constraint prediction algorithms. These try to find regions of negative\ selection, where variations likely have functional impact. The algorithms do\ not use multi-species alignments to derive evolutionary constraint, but use\ primarily human variation, usually from variants collected by gnomAD (see the\ gnomAD V2 or V3 tracks on hg19 and hg38) or TOPMED (contained in our dbSNP\ tracks and available as a filter). One of the subtracks is based on UK Biobank\ variants, which are not available publicly, so we have no track with the raw data.\ The number of human genomes that are used as the input for these scores are\ 76k, 53k and 110k for gnomAD, TOPMED and UK Biobank, respectively.\

    \ \

    Note that another important constraint score, gnomAD\ constraint, is not part of this container track but can be found in the hg38 gnomAD\ track.\

    \ \ The algorithms included in this track are:\
      \
    1. \ JARVIS - "Junk" Annotation genome-wide Residual Variation Intolerance Score: \ JARVIS scores were created by first scanning the entire genome with a\ sliding-window approach (using a 1-nucleotide step), recording the number of\ all TOPMED variants and common variants, irrespective of their predicted effect,\ within each window, to eventually calculate a single-nucleotide resolution\ genome-wide residual variation intolerance score (gwRVIS). That score, gwRVIS\ was then combined with primary genomic sequence context, and additional genomic\ annotations with a multi-module deep learning framework to infer\ pathogenicity of noncoding regions that still remains naive to existing\ phylogenetic conservation metrics. The higher the score, the more deleterious\ the prediction. This score covers the entire genome, except the gaps.\ \
    2. \ HMC - Homologous Missense Constraint:\ Homologous Missense Constraint (HMC) is a amino acid level measure\ of genetic intolerance of missense variants within human populations.\ For all assessable amino-acid positions in Pfam domains, the number of\ missense substitutions directly observed in gnomAD (Observed) was counted\ and compared to the expected value under a neutral evolution\ model (Expected). The upper limit of a 95% confidence interval for the\ Observed/Expected ratio is defined as the HMC score. Missense variants\ disrupting the amino-acid positions with HMC<0.8 are predicted to be\ likely deleterious. This score only covers PFAM domains within coding regions.\ \
    3. \ MetaDome - Tolerance Landscape Score (hg19 only):\ MetaDome Tolerance Landscape scores are computed as a missense over synonymous \ variant count ratio, which is calculated in a sliding window (with a size of 21 \ codons/residues) to provide \ a per-position indication of regional tolerance to missense variation. The \ variant database was gnomAD and the score corrected for codon composition. Scores \ <0.7 are considered intolerant. This score covers only coding regions.\ \
    4. \ MTR - Missense Tolerance Ratio (hg19 only):\ Missense Tolerance Ratio (MTR) scores aim to quantify the amount of purifying \ selection acting specifically on missense variants in a given window of \ protein-coding sequence. It is estimated across sliding windows of 31 codons \ (default) and uses observed standing variation data from the WES component of \ gnomAD / the Exome Aggregation Consortium Database (ExAC), version 2.0. Scores\ were computed using Ensembl v95 release. The number of gnomAD 2 exomes used here\ is higher than the number of gnomAD 3 samples (125 exoms versus 76k full genomes), \ but this score only covers coding regions.\ \
    5. \ UK Biobank depletion rank score (hg38 only):\ Halldorsson et al. tabulated the number of UK Biobank variants in each\ 500bp window of the genome and compared this number to an expected number\ given the heptamer nucleotide composition of the window and the fraction of\ heptamers with a sequence variant across the genome and their mutational\ classes. A variant depletion score was computed for every overlapping set\ of 500-bp windows in the genome with a 50-bp step size. They then assigned\ a rank (depletion rank (DR)) from 0 (most depletion) to 100 (least\ depletion) for each 500-bp window. Since the windows are overlapping, we\ plot the value only in the central 50bp of the 500bp window, following\ advice from the author of the score,\ Hakon Jonsson, deCODE Genetics. He suggested that the value of the central\ window, rather than the worst possible score of all overlapping windows, is\ the most informative for a position. This score covers almost the entire genome,\ only very few regions were excluded, where the genome sequence had too many gap characters.
    \ \

    Display Conventions and Configuration

    \ \

    JARVIS

    \

    \ JARVIS scores are shown as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The scores were downloaded and converted to a single bigWig file.\ Move the mouse over the bars to display the exact values. A horizontal line is shown at the 0.733\ value which signifies the 90th percentile.

    \ See hg19 makeDoc and\ hg38 makeDoc.

    \

    \ Interpretation: The authors offer a suggested guideline of > 0.9998 for identifying\ higher confidence calls and minimizing false positives. In addition to that strict threshold, the \ following two more relaxed cutoffs can be used to explore additional hits. Note that these\ thresholds are offered as guidelines and are not necessarily representative of pathogenicity.

    \ \

    \ \ \ \ \ \ \ \ \ \
    PercentileJARVIS score threshold
    99th0.9998
    95th0.9826
    90th0.7338
    \

    \ \

    HMC

    \

    \ HMC scores are displayed as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The highly-constrained cutoff\ of 0.8 is indicated with a line.

    \

    \ Interpretation: \ A protein residue with HMC score <1 indicates that missense variants affecting\ the homologous residues are significantly under negative selection (P-value <\ 0.05) and likely to be deleterious. A more stringent score threshold of HMC<0.8\ is recommended to prioritize predicted disease-associated variants.\

    \ \

    MetaDome

    \

    \ MetaDome data can be found on two tracks, MetaDome and MetaDome All Data.\ The MetaDome track should be used by default for data exploration. In this track\ the raw data containing the MetaDome tolerance scores were converted into a signal ("wiggle")\ track. Since this data was computed on the proteome, there was a small amount of coordinate\ overlap, roughly 0.42%. In these regions the lowest possible score was chosen for display\ in the track to maintain sensitivity. For this reason, if a protein variant is being evaluated,\ the MetaDome All Data track can be used to validate the score. More information\ on this data can be found in the MetaDome FAQ.

    \

    \ Interpretation: The authors suggest the following guidelines for evaluating\ intolerance. By default, the MetaDome track displays a horizontal line at 0.7 which \ signifies the first intolerant bin. For more information see the MetaDome publication.

    \ \

    \ \ \ \ \ \ \ \ \ \
    ClassificationMetaDome Tolerance Score
    Highly intolerant≤ 0.175
    Intolerant≤ 0.525
    Slightly intolerant≤ 0.7
    \

    \ \

    MTR

    \

    \ MTR data can be found on two tracks, MTR All data and MTR Scores. In the\ MTR Scores track the data has been converted into 4 separate signal tracks\ representing each base pair mutation, with the lowest possible score shown when\ multiple transcripts overlap at a position. Overlaps can happen since this score\ is derived from transcripts and multiple transcripts can overlap. \ A horizontal line is drawn on the 0.8 score line\ to roughly represent the 25th percentile, meaning the items below may be of particular\ interest. It is recommended that the data be explored using\ this version of the track, as it condenses the information substantially while\ retaining the magnitude of the data.

    \ \

    Any specific point mutations of interest can then be researched in the \ MTR All data track. This track contains all of the information from\ \ MTRV2 including more than 3 possible scores per base when transcripts overlap.\ A mouse-over on this track shows the ref and alt allele, as well as the MTR score\ and the MTR score percentile. Filters are available for MTR score, False Discovery Rate\ (FDR), MTR percentile, and variant consequence. By default, only items in the bottom\ 25 percentile are shown. Items in the track are colored according\ to their MTR percentile:

    \
      \
    • Green items MTR percentiles over 75\
    • Black items MTR percentiles between 25 and 75\
    • Red items MTR percentiles below 25\
    • Blue items No MTR score\
    \

    \ Interpretation: Regions with low MTR scores were seen to be enriched with\ pathogenic variants. For example, ClinVar pathogenic variants were seen to\ have an average score of 0.77 whereas ClinVar benign variants had an average score\ of 0.92. Further validation using the FATHMM cancer-associated training dataset saw\ that scores less than 0.5 contained 8.6% of the pathogenic variants while only containing\ 0.9% of neutral variants. In summary, lower scores are more likely to represent\ pathogenic variants whereas higher scores could be pathogenic, but have a higher chance\ to be a false positive. For more information see the MTR-Viewer publication.

    \ \

    Methods

    \ \

    JARVIS

    \

    \ Scores were downloaded and converted to a single bigWig file. See the\ hg19 makeDoc and the\ hg38 makeDoc for more info.\

    \ \

    HMC

    \

    \ Scores were downloaded and converted to .bedGraph files with a custom Python \ script. The bedGraph files were then converted to bigWig files, as documented in our \ makeDoc hg19 build log.

    \ \

    MetaDome

    \

    \ The authors provided a bed file containing codon coordinates along with the scores. \ This file was parsed with a python script to create the two tracks. For the first track\ the scores were aggregated for each coordinate, then the lowest score chosen for any\ overlaps and the result written out to bedGraph format. The file was then converted\ to bigWig with the bedGraphToBigWig utility. For the second track the file\ was reorganized into a bed 4+3 and conveted to bigBed with the bedToBigBed\ utility.

    \

    \ See the hg19 makeDoc for details including the build script.

    \

    \ The raw MetaDome data can also be accessed via their Zenodo handle.

    \ \

    MTR

    \

    \ V2\ file was downloaded and columns were reshuffled as well as itemRgb added for the\ MTR All data track. For the MTR Scores track the file was parsed with a python\ script to pull out the highest possible MTR score for each of the 3 possible mutations\ at each base pair and 4 tracks built out of these values representing each mutation.

    \

    \ See the hg19 makeDoc entry on MTR for more info.

    \ \

    Data Access

    \

    \ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\

    \ \

    \ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

    \ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/hmc/hmc.bw stdout\
    \

    \ \

    \ Please refer to our\ Data Access FAQ\ for more information.\

    \ \ \

    Credits

    \ \

    \ Thanks to Jean-Madeleine Desainteagathe (APHP Paris, France) for suggesting the JARVIS, MTR, HMC tracks. Thanks to Xialei Zhang for providing the HMC data file and to Dimitrios Vitsios and Slave Petrovski for helping clean up the hg38 JARVIS files for providing guidance on interpretation. Additional\ thanks to Laurens van de Wiel for providing the MetaDome data as well as guidance on the track development and interpretation. \

    \ \

    References

    \ \

    \ Vitsios D, Dhindsa RS, Middleton L, Gussow AB, Petrovski S.\ \ Prioritizing non-coding regions based on human genomic constraint and sequence context with deep\ learning.\ Nat Commun. 2021 Mar 8;12(1):1504.\ PMID: 33686085; PMC: PMC7940646\

    \ \

    \ Xiaolei Zhang, Pantazis I. Theotokis, Nicholas Li, the SHaRe Investigators, Caroline F. Wright, Kaitlin E. Samocha, Nicola Whiffin, James S. Ware\ \ Genetic constraint at single amino acid resolution improves missense variant prioritisation and gene discovery.\ Medrxiv 2022.02.16.22271023\

    \ \

    \ Wiel L, Baakman C, Gilissen D, Veltman JA, Vriend G, Gilissen C.\ \ MetaDome: Pathogenicity analysis of genetic variants through aggregation of homologous human protein\ domains.\ Hum Mutat. 2019 Aug;40(8):1030-1038.\ PMID: 31116477; PMC: PMC6772141\

    \ \

    \ Silk M, Petrovski S, Ascher DB.\ \ MTR-Viewer: identifying regions within genes under purifying selection.\ Nucleic Acids Res. 2019 Jul 2;47(W1):W121-W126.\ PMID: 31170280; PMC: PMC6602522\

    \ \

    \ Halldorsson BV, Eggertsson HP, Moore KHS, Hauswedell H, Eiriksson O, Ulfarsson MO, Palsson G,\ Hardarson MT, Oddsson A, Jensson BO et al.\ \ The sequences of 150,119 genomes in the UK Biobank.\ Nature. 2022 Jul;607(7920):732-740.\ PMID: 35859178; PMC: PMC9329122\

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24 0 12 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 24\ parent cloneEndSuper off\ priority 12\ shortLabel ABC24\ subGroups source=agencourt\ track cloneEndABC24\ type bed 12\ visibility hide\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep1LK7_CNhs13341_tpm_rev AorticSmsToFgf2_00hr30minBr1- bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep1 (LK7)_CNhs13341_12644-134G7_reverse 1 12 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12644-134G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep1%20%28LK7%29.CNhs13341.12644-134G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep1 (LK7)_CNhs13341_12644-134G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12644-134G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep1LK7_CNhs13341_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12644-134G7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep1LK7_CNhs13341_ctss_rev AorticSmsToFgf2_00hr30minBr1- bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep1 (LK7)_CNhs13341_12644-134G7_reverse 0 12 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12644-134G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep1%20%28LK7%29.CNhs13341.12644-134G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep1 (LK7)_CNhs13341_12644-134G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12644-134G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep1LK7_CNhs13341_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12644-134G7\ urlLabel FANTOM5 Details:\ bismap100Quantitative Bismap M100 bigWig 0.01 1.00 Multi-read mappability with 100-mers after bisulfite conversion 0 12 240 170 80 247 212 167 0 0 0 map 0 bigDataUrl /gbdb/hg38/hoffmanMappability/k100.Bismap.MultiTrackMappability.bw\ color 240,170,80\ longLabel Multi-read mappability with 100-mers after bisulfite conversion\ parent bismapBigWig off\ priority 12\ shortLabel Bismap M100\ subGroups view=MR\ track bismap100Quantitative\ type bigWig 0.01 1.00\ visibility hide\ wgEncodeRegDnaseUwBjPeak BJ Pk narrowPeak BJ foreskin fibroblast cell line DNaseI Peaks from ENCODE 1 12 255 184 85 255 219 170 1 0 0 regulation 1 color 255,184,85\ longLabel BJ foreskin fibroblast cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel BJ Pk\ subGroups view=a_Peaks cellType=BJ treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwBjPeak\ wgEncodeRegDnaseUwBjWig BJ Sg bigWig 0 28788.2 BJ foreskin fibroblast cell line DNaseI Signal from ENCODE 0 12 255 184 85 255 219 170 0 0 0 regulation 1 color 255,184,85\ longLabel BJ foreskin fibroblast cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.11593\ shortLabel BJ Sg\ subGroups cellType=BJ treatment=n_a tissue=skin cancer=normal\ table wgEncodeRegDnaseUwBjSignal\ track wgEncodeRegDnaseUwBjWig\ type bigWig 0 28788.2\ gtexCovBrainCerebellarHemisphere Brain Cereb Hemisph bigWig Brain Cerebellar Hemisphere 0 12 238 238 0 246 246 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-13X6J-0011-R11a-SM-5P9HE.Brain_Cerebellar_Hemisphere.RNAseq.bw\ color 238,238,0\ longLabel Brain Cerebellar Hemisphere\ parent gtexCov\ shortLabel Brain Cereb Hemisph\ track gtexCovBrainCerebellarHemisphere\ netHprcGCA_018506125v1 HG02055.mat netAlign GCA_018506125.1 chainHprcGCA_018506125v1 HG02055.mat HG02055.pri.mat.f1_v2 (May 2021 GCA_018506125.1_HG02055.pri.mat.f1_v2) HPRC project computed Chain Nets 1 12 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02055.mat HG02055.pri.mat.f1_v2 (May 2021 GCA_018506125.1_HG02055.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018506125.1\ parent hprcChainNetViewnet off\ priority 28\ shortLabel HG02055.mat\ subGroups view=net sample=s028 population=afr subpop=acb hap=mat\ track netHprcGCA_018506125v1\ type netAlign GCA_018506125.1 chainHprcGCA_018506125v1\ lincRNAsCTLiver Liver bed 5 + lincRNAs from liver 1 12 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from liver\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Liver\ subGroups view=lincRNAsRefseqExp tissueType=liver\ track lincRNAsCTLiver\ unipRepeat Repeats bigBed 12 + UniProt Repeats 1 12 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg38/uniprot/unipRepeat.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ longLabel UniProt Repeats\ parent uniprot\ priority 12\ shortLabel Repeats\ track unipRepeat\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#family_and_domains" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility dense\ Agilent_Human_Exon_Clinical_Research_V2_Regions SureSel. Clinical V2 T bigBed Agilent - SureSelect Clinical Research Exome V2 Target Regions 0 12 255 36 36 255 145 145 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/S30409818_Regions.bb\ color 255,36,36\ longLabel Agilent - SureSelect Clinical Research Exome V2 Target Regions\ parent exomeProbesets on\ shortLabel SureSel. Clinical V2 T\ track Agilent_Human_Exon_Clinical_Research_V2_Regions\ type bigBed\ chainXenLae2 xenLae2 Chain chain xenLae2 African clawed frog (Aug. 2016 (Xenopus_laevis_v2/xenLae2)) Chained Alignments 3 13 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel African clawed frog (Aug. 2016 (Xenopus_laevis_v2/xenLae2)) Chained Alignments\ otherDb xenLae2\ parent vertebrateChainNetViewchain off\ shortLabel xenLae2 Chain\ subGroups view=chain species=s034 clade=c03\ track chainXenLae2\ type chain xenLae2\ chainRhiRox1 rhiRox1 Chain chain rhiRox1 Golden snub-nosed monkey (Oct. 2014 (Rrox_v1/rhiRox1)) Chained Alignments 3 13 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Golden snub-nosed monkey (Oct. 2014 (Rrox_v1/rhiRox1)) Chained Alignments\ otherDb rhiRox1\ parent primateChainNetViewchain off\ shortLabel rhiRox1 Chain\ subGroups view=chain species=s018 clade=c01\ track chainRhiRox1\ type chain rhiRox1\ chainCanFam6 Dog Chain chain canFam6 Dog (Oct. 2020 (Dog10K_Boxer_Tasha/canFam6)) Chained Alignments 3 13 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Dog (Oct. 2020 (Dog10K_Boxer_Tasha/canFam6)) Chained Alignments\ otherDb canFam6\ parent placentalChainNetViewchain off\ shortLabel Dog Chain\ subGroups view=chain species=s034a clade=c01\ track chainCanFam6\ type chain canFam6\ encTfChipPkENCFF935ZUW A549 ELF1 narrowPeak Transcription Factor ChIP-seq Peaks of ELF1 in A549 from ENCODE 3 (ENCFF935ZUW) 0 13 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of ELF1 in A549 from ENCODE 3 (ENCFF935ZUW)\ parent encTfChipPk off\ shortLabel A549 ELF1\ subGroups cellType=A549 factor=ELF1\ track encTfChipPkENCFF935ZUW\ cloneEndABC27 ABC27 bed 12 Agencourt fosmid library 27 0 13 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 27\ parent cloneEndSuper off\ priority 13\ shortLabel ABC27\ subGroups source=agencourt\ track cloneEndABC27\ type bed 12\ visibility hide\ wgEncodeRegDnaseUwAg09309Peak AG09309 Pk narrowPeak AG09309 skin fibroblast DNaseI Peaks from ENCODE 1 13 255 186 85 255 220 170 1 0 0 regulation 1 color 255,186,85\ longLabel AG09309 skin fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel AG09309 Pk\ subGroups view=a_Peaks cellType=AG09309 treatment=n_a tissue=skin cancer=unknown\ track wgEncodeRegDnaseUwAg09309Peak\ wgEncodeRegDnaseUwAg09309Wig AG09309 Sg bigWig 0 29145.4 AG09309 skin fibroblast DNaseI Signal from ENCODE 0 13 255 186 85 255 220 170 0 0 0 regulation 1 color 255,186,85\ longLabel AG09309 skin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.11916\ shortLabel AG09309 Sg\ subGroups cellType=AG09309 treatment=n_a tissue=skin cancer=unknown\ table wgEncodeRegDnaseUwAg09309Signal\ track wgEncodeRegDnaseUwAg09309Wig\ type bigWig 0 29145.4\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_tpm_fwd AorticSmsToFgf2_00hr30minBr2+ bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_forward 1 13 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep2%20%28LK8%29.CNhs13360.12742-135I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12742-135I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_ctss_fwd AorticSmsToFgf2_00hr30minBr2+ bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_forward 0 13 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep2%20%28LK8%29.CNhs13360.12742-135I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12742-135I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6\ urlLabel FANTOM5 Details:\ gtexCovBrainCortex Brain Cortex bigWig Brain Cortex 0 13 238 238 0 246 246 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-UTHO-3026-SM-3GAFB.Brain_Cortex.RNAseq.bw\ color 238,238,0\ longLabel Brain Cortex\ parent gtexCov\ shortLabel Brain Cortex\ track gtexCovBrainCortex\ phastCons100way Cons 100 Verts wig 0 1 100 vertebrates conservation by PhastCons 0 13 70 130 70 130 70 70 0 0 0 compGeno 0 altColor 130,70,70\ autoScale off\ color 70,130,70\ configurable on\ longLabel 100 vertebrates conservation by PhastCons\ maxHeightPixels 100:40:11\ noInherit on\ parent cons100wayViewphastcons off\ priority 13\ shortLabel Cons 100 Verts\ spanList 1\ subGroups view=phastcons\ track phastCons100way\ type wig 0 1\ windowingFunction mean\ phastCons30way Cons 30 Mammals wig 0 1 30 mammals conservation by PhastCons (27 primates) 2 13 70 130 70 130 70 70 0 0 0 compGeno 0 altColor 130,70,70\ autoScale off\ color 70,130,70\ configurable on\ longLabel 30 mammals conservation by PhastCons (27 primates)\ maxHeightPixels 100:40:11\ noInherit on\ parent cons30wayViewphastcons on\ priority 13\ shortLabel Cons 30 Mammals\ spanList 1\ subGroups view=phastcons\ track phastCons30way\ type wig 0 1\ windowingFunction mean\ chainHprcGCA_018852585v1 HG02145.mat chain GCA_018852585.1 HG02145.mat HG02145.pri.mat.f1_v2 (Jun. 2021 GCA_018852585.1_HG02145.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 13 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02145.mat HG02145.pri.mat.f1_v2 (Jun. 2021 GCA_018852585.1_HG02145.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018852585.1\ parent hprcChainNetViewchain off\ priority 29\ shortLabel HG02145.mat\ subGroups view=chain sample=s029 population=afr subpop=acb hap=mat\ track chainHprcGCA_018852585v1\ type chain GCA_018852585.1\ KIRC KIRC bigLolly 12 + Kidney renal clear cell carcinoma 0 13 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/KIRC.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Kidney renal clear cell carcinoma\ parent gdcCancer off\ priority 13\ shortLabel KIRC\ track KIRC\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ lincRNAsCTLung Lung bed 5 + lincRNAs from lung 1 13 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from lung\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Lung\ subGroups view=lincRNAsRefseqExp tissueType=lung\ track lincRNAsCTLung\ unipConflict Seq. Conflicts bigBed 12 + UniProt Sequence Conflicts 1 13 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg38/uniprot/unipConflict.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ longLabel UniProt Sequence Conflicts\ parent uniprot off\ priority 13\ shortLabel Seq. Conflicts\ track unipConflict\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#Sequence_conflict_section" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility dense\ Agilent_Human_Exon_Focused_Covered SureSel. Focused P bigBed Agilent - SureSelect Focused Exome Covered by Probes 0 13 255 36 36 255 145 145 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/S07084713_Covered.bb\ color 255,36,36\ longLabel Agilent - SureSelect Focused Exome Covered by Probes\ parent exomeProbesets off\ shortLabel SureSel. Focused P\ track Agilent_Human_Exon_Focused_Covered\ type bigBed\ netXenLae2 xenLae2 Net netAlign xenLae2 chainXenLae2 African clawed frog (Aug. 2016 (Xenopus_laevis_v2/xenLae2)) Alignment Net 1 14 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel African clawed frog (Aug. 2016 (Xenopus_laevis_v2/xenLae2)) Alignment Net\ otherDb xenLae2\ parent vertebrateChainNetViewnet off\ shortLabel xenLae2 Net\ subGroups view=net species=s034 clade=c03\ track netXenLae2\ type netAlign xenLae2 chainXenLae2\ netRhiRox1 rhiRox1 Net netAlign rhiRox1 chainRhiRox1 Golden snub-nosed monkey (Oct. 2014 (Rrox_v1/rhiRox1)) Alignment Net 1 14 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Golden snub-nosed monkey (Oct. 2014 (Rrox_v1/rhiRox1)) Alignment Net\ otherDb rhiRox1\ parent primateChainNetViewnet off\ shortLabel rhiRox1 Net\ subGroups view=net species=s018 clade=c01\ track netRhiRox1\ type netAlign rhiRox1 chainRhiRox1\ netCanFam6 Dog Net netAlign canFam6 chainCanFam6 Dog (Oct. 2020 (Dog10K_Boxer_Tasha/canFam6)) Alignment Net 1 14 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Dog (Oct. 2020 (Dog10K_Boxer_Tasha/canFam6)) Alignment Net\ otherDb canFam6\ parent placentalChainNetViewnet on\ shortLabel Dog Net\ subGroups view=net species=s034a clade=c01\ track netCanFam6\ type netAlign canFam6 chainCanFam6\ encTfChipPkENCFF605JXG A549 ELK1 narrowPeak Transcription Factor ChIP-seq Peaks of ELK1 in A549 from ENCODE 3 (ENCFF605JXG) 0 14 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of ELK1 in A549 from ENCODE 3 (ENCFF605JXG)\ parent encTfChipPk off\ shortLabel A549 ELK1\ subGroups cellType=A549 factor=ELK1\ track encTfChipPkENCFF605JXG\ cloneEndABC7 ABC7 bed 12 Agencourt fosmid library 7 0 14 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 7\ parent cloneEndSuper off\ priority 14\ shortLabel ABC7\ subGroups source=agencourt\ track cloneEndABC7\ type bed 12\ visibility hide\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_tpm_rev AorticSmsToFgf2_00hr30minBr2- bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_reverse 1 14 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep2%20%28LK8%29.CNhs13360.12742-135I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12742-135I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_ctss_rev AorticSmsToFgf2_00hr30minBr2- bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_reverse 0 14 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep2%20%28LK8%29.CNhs13360.12742-135I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12742-135I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6\ urlLabel FANTOM5 Details:\ gtexCovBrainFrontalCortexBA9 Brain Front Cortex bigWig Brain Frontal Cortex BA9 0 14 238 238 0 246 246 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-T5JC-0011-R10A-SM-32PM2.Brain_Frontal_Cortex_BA9.RNAseq.bw\ color 238,238,0\ longLabel Brain Frontal Cortex BA9\ parent gtexCov\ shortLabel Brain Front Cortex\ track gtexCovBrainFrontalCortexBA9\ netHprcGCA_018852585v1 HG02145.mat netAlign GCA_018852585.1 chainHprcGCA_018852585v1 HG02145.mat HG02145.pri.mat.f1_v2 (Jun. 2021 GCA_018852585.1_HG02145.pri.mat.f1_v2) HPRC project computed Chain Nets 1 14 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02145.mat HG02145.pri.mat.f1_v2 (Jun. 2021 GCA_018852585.1_HG02145.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018852585.1\ parent hprcChainNetViewnet off\ priority 29\ shortLabel HG02145.mat\ subGroups view=net sample=s029 population=afr subpop=acb hap=mat\ track netHprcGCA_018852585v1\ type netAlign GCA_018852585.1 chainHprcGCA_018852585v1\ wgEncodeRegDnaseUwHnpcepicPeak HNPCEpiC Pk narrowPeak HNPCEpiC non-pigmented ciliary epithelium (NPCEC) DNaseI Peaks from ENCODE 1 14 255 188 85 255 221 170 1 0 0 regulation 1 color 255,188,85\ longLabel HNPCEpiC non-pigmented ciliary epithelium (NPCEC) DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HNPCEpiC Pk\ subGroups view=a_Peaks cellType=HNPCEpiC treatment=n_a tissue=eye cancer=normal\ track wgEncodeRegDnaseUwHnpcepicPeak\ wgEncodeRegDnaseUwHnpcepicWig HNPCEpiC Sg bigWig 0 26522.6 HNPCEpiC non-pigmented ciliary epithelium (NPCEC) DNaseI Signal from ENCODE 0 14 255 188 85 255 221 170 0 0 0 regulation 1 color 255,188,85\ longLabel HNPCEpiC non-pigmented ciliary epithelium (NPCEC) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.124\ shortLabel HNPCEpiC Sg\ subGroups cellType=HNPCEpiC treatment=n_a tissue=eye cancer=normal\ table wgEncodeRegDnaseUwHnpcepicSignal\ track wgEncodeRegDnaseUwHnpcepicWig\ type bigWig 0 26522.6\ KIRP KIRP bigLolly 12 + Kidney renal papillary cell carcinoma 0 14 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/KIRP.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Kidney renal papillary cell carcinoma\ parent gdcCancer off\ priority 14\ shortLabel KIRP\ track KIRP\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ lincRNAsCTLymphNode LymphNode bed 5 + lincRNAs from lymphnode 1 14 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from lymphnode\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel LymphNode\ subGroups view=lincRNAsRefseqExp tissueType=lymphnode\ track lincRNAsCTLymphNode\ Agilent_Human_Exon_Focused_Regions SureSel. Focused T bigBed Agilent - SureSelect Focused Exome Target Regions 0 14 255 36 36 255 145 145 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/S07084713_Regions.bb\ color 255,36,36\ longLabel Agilent - SureSelect Focused Exome Target Regions\ parent exomeProbesets off\ shortLabel SureSel. Focused T\ track Agilent_Human_Exon_Focused_Regions\ type bigBed\ chainDanRer11 Zebrafish Chain chain danRer11 Zebrafish (May 2017 (GRCz11/danRer11)) Chained Alignments 3 15 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Zebrafish (May 2017 (GRCz11/danRer11)) Chained Alignments\ otherDb danRer11\ parent vertebrateChainNetViewchain off\ shortLabel Zebrafish Chain\ subGroups view=chain species=s043 clade=c06\ track chainDanRer11\ type chain danRer11\ chainMacFas5 Crab-eating macaque Chain chain macFas5 Crab-eating macaque (Jun. 2013 (Macaca_fascicularis_5.0/macFas5)) Chained Alignments 3 15 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Crab-eating macaque (Jun. 2013 (Macaca_fascicularis_5.0/macFas5)) Chained Alignments\ otherDb macFas5\ parent primateChainNetViewchain off\ shortLabel Crab-eating macaque Chain\ subGroups view=chain species=s020 clade=c01\ track chainMacFas5\ type chain macFas5\ chainCanFam4 Dog Chain chain canFam4 Dog (Mar. 2020 (UU_Cfam_GSD_1.0/canFam4)) Chained Alignments 3 15 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Dog (Mar. 2020 (UU_Cfam_GSD_1.0/canFam4)) Chained Alignments\ otherDb canFam4\ parent placentalChainNetViewchain off\ shortLabel Dog Chain\ subGroups view=chain species=s034c clade=c01\ track chainCanFam4\ type chain canFam4\ encTfChipPkENCFF558UWY A549 ESRRA narrowPeak Transcription Factor ChIP-seq Peaks of ESRRA in A549 from ENCODE 3 (ENCFF558UWY) 0 15 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of ESRRA in A549 from ENCODE 3 (ENCFF558UWY)\ parent encTfChipPk off\ shortLabel A549 ESRRA\ subGroups cellType=A549 factor=ESRRA\ track encTfChipPkENCFF558UWY\ cloneEndABC8 ABC8 bed 12 Agencourt fosmid library 8 0 15 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 8\ parent cloneEndSuper off\ priority 15\ shortLabel ABC8\ subGroups source=agencourt\ track cloneEndABC8\ type bed 12\ visibility hide\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep3LK9_CNhs13569_tpm_fwd AorticSmsToFgf2_00hr30minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep3 (LK9)_CNhs13569_12840-137B5_forward 1 15 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12840-137B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep3%20%28LK9%29.CNhs13569.12840-137B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep3 (LK9)_CNhs13569_12840-137B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12840-137B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep3LK9_CNhs13569_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12840-137B5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep3LK9_CNhs13569_ctss_fwd AorticSmsToFgf2_00hr30minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep3 (LK9)_CNhs13569_12840-137B5_forward 0 15 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12840-137B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep3%20%28LK9%29.CNhs13569.12840-137B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep3 (LK9)_CNhs13569_12840-137B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12840-137B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep3LK9_CNhs13569_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12840-137B5\ urlLabel FANTOM5 Details:\ gtexCovBrainHippocampus Brain Hippocamp bigWig Brain Hippocampus 0 15 238 238 0 246 246 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1HSKV-0011-R1b-SM-CMKH7.Brain_Hippocampus.RNAseq.bw\ color 238,238,0\ longLabel Brain Hippocampus\ parent gtexCov\ shortLabel Brain Hippocamp\ track gtexCovBrainHippocampus\ chainHprcGCA_018466835v1 HG02257.pat chain GCA_018466835.1 HG02257.pat HG02257.alt.pat.f1_v2 (May 2021 GCA_018466835.1_HG02257.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 15 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02257.pat HG02257.alt.pat.f1_v2 (May 2021 GCA_018466835.1_HG02257.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018466835.1\ parent hprcChainNetViewchain off\ priority 17\ shortLabel HG02257.pat\ subGroups view=chain sample=s017 population=afr subpop=acb hap=pat\ track chainHprcGCA_018466835v1\ type chain GCA_018466835.1\ LAML LAML bigLolly 12 + Acute Myeloid Leukemia 0 15 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/LAML.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Acute Myeloid Leukemia\ parent gdcCancer off\ priority 15\ shortLabel LAML\ track LAML\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ lincRNAsCTOvary Ovary bed 5 + lincRNAs from ovary 1 15 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from ovary\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Ovary\ subGroups view=lincRNAsRefseqExp tissueType=ovary\ track lincRNAsCTOvary\ Agilent_Human_Exon_V4_Covered SureSel. V4+UTR P bigBed Agilent - SureSelect All Exon V4 + UTRs Covered by Probes 0 15 255 36 36 255 145 145 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/S04380110_Covered.bb\ color 255,36,36\ longLabel Agilent - SureSelect All Exon V4 + UTRs Covered by Probes\ parent exomeProbesets off\ shortLabel SureSel. V4+UTR P\ track Agilent_Human_Exon_V4_Covered\ type bigBed\ wgEncodeRegDnaseUwWi38Peak WI-38 Pk narrowPeak WI-38 embryonic lung fibroblast cell line DNaseI Peaks from ENCODE 1 15 255 192 85 255 223 170 1 0 0 regulation 1 color 255,192,85\ longLabel WI-38 embryonic lung fibroblast cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel WI-38 Pk\ subGroups view=a_Peaks cellType=WI-38 treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwWi38Peak\ wgEncodeRegDnaseUwWi38Wig WI-38 Sg bigWig 0 21133.7 WI-38 embryonic lung fibroblast cell line DNaseI Signal from ENCODE 0 15 255 192 85 255 223 170 0 0 0 regulation 1 color 255,192,85\ longLabel WI-38 embryonic lung fibroblast cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.13075\ shortLabel WI-38 Sg\ subGroups cellType=WI-38 treatment=n_a tissue=lung cancer=normal\ table wgEncodeRegDnaseUwWi38Signal\ track wgEncodeRegDnaseUwWi38Wig\ type bigWig 0 21133.7\ netDanRer11 Zebrafish Net netAlign danRer11 chainDanRer11 Zebrafish (May 2017 (GRCz11/danRer11)) Alignment Net 1 16 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Zebrafish (May 2017 (GRCz11/danRer11)) Alignment Net\ otherDb danRer11\ parent vertebrateChainNetViewnet on\ shortLabel Zebrafish Net\ subGroups view=net species=s043 clade=c06\ track netDanRer11\ type netAlign danRer11 chainDanRer11\ netMacFas5 Crab-eating macaque Net netAlign macFas5 chainMacFas5 Crab-eating macaque (Jun. 2013 (Macaca_fascicularis_5.0/macFas5)) Alignment Net 1 16 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Crab-eating macaque (Jun. 2013 (Macaca_fascicularis_5.0/macFas5)) Alignment Net\ otherDb macFas5\ parent primateChainNetViewnet off\ shortLabel Crab-eating macaque Net\ subGroups view=net species=s020 clade=c01\ track netMacFas5\ type netAlign macFas5 chainMacFas5\ netCanFam4 Dog Net netAlign canFam4 chainCanFam4 Dog (Mar. 2020 (UU_Cfam_GSD_1.0/canFam4)) Alignment Net 1 16 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Dog (Mar. 2020 (UU_Cfam_GSD_1.0/canFam4)) Alignment Net\ otherDb canFam4\ parent placentalChainNetViewnet on\ shortLabel Dog Net\ subGroups view=net species=s034c clade=c01\ track netCanFam4\ type netAlign canFam4 chainCanFam4\ encTfChipPkENCFF896WFR A549 ETS1 narrowPeak Transcription Factor ChIP-seq Peaks of ETS1 in A549 from ENCODE 3 (ENCFF896WFR) 0 16 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of ETS1 in A549 from ENCODE 3 (ENCFF896WFR)\ parent encTfChipPk off\ shortLabel A549 ETS1\ subGroups cellType=A549 factor=ETS1\ track encTfChipPkENCFF896WFR\ cloneEndABC9 ABC9 bed 12 Agencourt fosmid library 9 0 16 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 9\ parent cloneEndSuper off\ priority 16\ shortLabel ABC9\ subGroups source=agencourt\ track cloneEndABC9\ type bed 12\ visibility hide\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep3LK9_CNhs13569_tpm_rev AorticSmsToFgf2_00hr30minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep3 (LK9)_CNhs13569_12840-137B5_reverse 1 16 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12840-137B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep3%20%28LK9%29.CNhs13569.12840-137B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep3 (LK9)_CNhs13569_12840-137B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12840-137B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep3LK9_CNhs13569_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12840-137B5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep3LK9_CNhs13569_ctss_rev AorticSmsToFgf2_00hr30minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep3 (LK9)_CNhs13569_12840-137B5_reverse 0 16 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12840-137B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep3%20%28LK9%29.CNhs13569.12840-137B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep3 (LK9)_CNhs13569_12840-137B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12840-137B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep3LK9_CNhs13569_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12840-137B5\ urlLabel FANTOM5 Details:\ gtexCovBrainHypothalamus Brain Hypothal bigWig Brain Hypothalamus 0 16 238 238 0 246 246 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-T5JC-0011-R8A-SM-32PLM.Brain_Hypothalamus.RNAseq.bw\ color 238,238,0\ longLabel Brain Hypothalamus\ parent gtexCov\ shortLabel Brain Hypothal\ track gtexCovBrainHypothalamus\ wgEncodeRegDnaseUwGm04503Peak GM04503 Pk narrowPeak GM04503 skin fibroblast DNaseI Peaks from ENCODE 1 16 255 200 85 255 227 170 1 0 0 regulation 1 color 255,200,85\ longLabel GM04503 skin fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel GM04503 Pk\ subGroups view=a_Peaks cellType=GM04503 treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwGm04503Peak\ wgEncodeRegDnaseUwGm04503Wig GM04503 Sg bigWig 0 11390.2 GM04503 skin fibroblast DNaseI Signal from ENCODE 0 16 255 200 85 255 227 170 0 0 0 regulation 1 color 255,200,85\ longLabel GM04503 skin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.1425\ shortLabel GM04503 Sg\ subGroups cellType=GM04503 treatment=n_a tissue=skin cancer=normal\ table wgEncodeRegDnaseUwGm04503Signal\ track wgEncodeRegDnaseUwGm04503Wig\ type bigWig 0 11390.2\ netHprcGCA_018466835v1 HG02257.pat netAlign GCA_018466835.1 chainHprcGCA_018466835v1 HG02257.pat HG02257.alt.pat.f1_v2 (May 2021 GCA_018466835.1_HG02257.alt.pat.f1_v2) HPRC project computed Chain Nets 1 16 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02257.pat HG02257.alt.pat.f1_v2 (May 2021 GCA_018466835.1_HG02257.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018466835.1\ parent hprcChainNetViewnet off\ priority 17\ shortLabel HG02257.pat\ subGroups view=net sample=s017 population=afr subpop=acb hap=pat\ track netHprcGCA_018466835v1\ type netAlign GCA_018466835.1 chainHprcGCA_018466835v1\ LGG LGG bigLolly 12 + Brain Lower Grade Glioma 0 16 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/LGG.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Brain Lower Grade Glioma\ parent gdcCancer off\ priority 16\ shortLabel LGG\ track LGG\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ lincRNAsCTPlacenta_R Placenta_R bed 5 + lincRNAs from placenta_r 1 16 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from placenta_r\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Placenta_R\ subGroups view=lincRNAsRefseqExp tissueType=placenta_r\ track lincRNAsCTPlacenta_R\ Agilent_Human_Exon_V4_Regions SureSel. V4+UTR T bigBed Agilent - SureSelect All Exon V4 + UTRs Target Regions 0 16 255 36 36 255 145 145 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/S04380110_Regions.bb\ color 255,36,36\ longLabel Agilent - SureSelect All Exon V4 + UTRs Target Regions\ parent exomeProbesets off\ shortLabel SureSel. V4+UTR T\ track Agilent_Human_Exon_V4_Regions\ type bigBed\ chainPetMar3 Lamprey Chain chain petMar3 Lamprey (Dec. 2017 (Pmar_germline 1.0/petMar3)) Chained Alignments 3 17 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Lamprey (Dec. 2017 (Pmar_germline 1.0/petMar3)) Chained Alignments\ otherDb petMar3\ parent vertebrateChainNetViewchain off\ shortLabel Lamprey Chain\ subGroups view=chain species=s064a clade=c07\ track chainPetMar3\ type chain petMar3\ chainRheMac10 Rhesus Chain chain rheMac10 Rhesus (Feb. 2019 (Mmul_10/rheMac10)) Chained Alignments 3 17 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Rhesus (Feb. 2019 (Mmul_10/rheMac10)) Chained Alignments\ otherDb rheMac10\ parent primateChainNetViewchain off\ shortLabel Rhesus Chain\ subGroups view=chain species=s021 clade=c01\ track chainRheMac10\ type chain rheMac10\ chainFelCat9 Cat Chain chain felCat9 Cat (Nov. 2017 (Felis_catus_9.0/felCat9)) Chained Alignments 3 17 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Cat (Nov. 2017 (Felis_catus_9.0/felCat9)) Chained Alignments\ otherDb felCat9\ parent placentalChainNetViewchain off\ shortLabel Cat Chain\ subGroups view=chain species=s037c clade=c01\ track chainFelCat9\ type chain felCat9\ encTfChipPkENCFF808RWZ A549 FOSL2 narrowPeak Transcription Factor ChIP-seq Peaks of FOSL2 in A549 from ENCODE 3 (ENCFF808RWZ) 0 17 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of FOSL2 in A549 from ENCODE 3 (ENCFF808RWZ)\ parent encTfChipPk off\ shortLabel A549 FOSL2\ subGroups cellType=A549 factor=FOSL2\ track encTfChipPkENCFF808RWZ\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep1LK10_CNhs13343_tpm_fwd AorticSmsToFgf2_00hr45minBr1+ bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep1 (LK10)_CNhs13343_12645-134G8_forward 1 17 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12645-134G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep1%20%28LK10%29.CNhs13343.12645-134G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep1 (LK10)_CNhs13343_12645-134G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12645-134G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep1LK10_CNhs13343_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12645-134G8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep1LK10_CNhs13343_ctss_fwd AorticSmsToFgf2_00hr45minBr1+ bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep1 (LK10)_CNhs13343_12645-134G8_forward 0 17 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12645-134G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep1%20%28LK10%29.CNhs13343.12645-134G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep1 (LK10)_CNhs13343_12645-134G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12645-134G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep1LK10_CNhs13343_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12645-134G8\ urlLabel FANTOM5 Details:\ gtexCovBrainNucleusaccumbensbasalganglia Brain Nucl acc bas gang bigWig Brain Nucleus accumbens basal ganglia 0 17 238 238 0 246 246 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-14BIN-0011-R6a-SM-5S2RH.Brain_Nucleus_accumbens_basal_ganglia.RNAseq.bw\ color 238,238,0\ longLabel Brain Nucleus accumbens basal ganglia\ parent gtexCov\ shortLabel Brain Nucl acc bas gang\ track gtexCovBrainNucleusaccumbensbasalganglia\ cloneEndCTD CTD bed 12 CalTech BAC library D 0 17 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel CalTech BAC library D\ parent cloneEndSuper on\ priority 20\ shortLabel CTD\ subGroups source=caltech\ track cloneEndCTD\ type bed 12\ visibility hide\ wgEncodeRegDnaseUwGm04504Peak GM04504 Pk narrowPeak GM04504 skin fibroblast DNaseI Peaks from ENCODE 1 17 255 204 85 255 229 170 1 0 0 regulation 1 color 255,204,85\ longLabel GM04504 skin fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel GM04504 Pk\ subGroups view=a_Peaks cellType=GM04504 treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwGm04504Peak\ wgEncodeRegDnaseUwGm04504Wig GM04504 Sg bigWig 0 11566.9 GM04504 skin fibroblast DNaseI Signal from ENCODE 0 17 255 204 85 255 229 170 0 0 0 regulation 1 color 255,204,85\ longLabel GM04504 skin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.14786\ shortLabel GM04504 Sg\ subGroups cellType=GM04504 treatment=n_a tissue=skin cancer=normal\ table wgEncodeRegDnaseUwGm04504Signal\ track wgEncodeRegDnaseUwGm04504Wig\ type bigWig 0 11566.9\ chainHprcGCA_018466855v1 HG02559.pat chain GCA_018466855.1 HG02559.pat HG02559.alt.pat.f1_v2 (May 2021 GCA_018466855.1_HG02559.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 17 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02559.pat HG02559.alt.pat.f1_v2 (May 2021 GCA_018466855.1_HG02559.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018466855.1\ parent hprcChainNetViewchain off\ priority 19\ shortLabel HG02559.pat\ subGroups view=chain sample=s019 population=afr subpop=acb hap=pat\ track chainHprcGCA_018466855v1\ type chain GCA_018466855.1\ LIHC LIHC bigLolly 12 + Liver hepatocellular carcinoma 0 17 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/LIHC.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Liver hepatocellular carcinoma\ parent gdcCancer off\ priority 17\ shortLabel LIHC\ track LIHC\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ lincRNAsCTProstate Prostate bed 5 + lincRNAs from prostate 1 17 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from prostate\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Prostate\ subGroups view=lincRNAsRefseqExp tissueType=prostate\ track lincRNAsCTProstate\ Agilent_Human_Exon_V5_UTRs_Covered SureSel. V5+UTR P bigBed Agilent - SureSelect All Exon V5 + UTRs Covered by Probes 0 17 255 36 36 255 145 145 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/S04380219_Covered.bb\ color 255,36,36\ longLabel Agilent - SureSelect All Exon V5 + UTRs Covered by Probes\ parent exomeProbesets off\ shortLabel SureSel. V5+UTR P\ track Agilent_Human_Exon_V5_UTRs_Covered\ type bigBed\ netPetMar3 Lamprey Net netAlign petMar3 chainPetMar3 Lamprey (Dec. 2017 (Pmar_germline 1.0/petMar3)) Alignment Net 1 18 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Lamprey (Dec. 2017 (Pmar_germline 1.0/petMar3)) Alignment Net\ otherDb petMar3\ parent vertebrateChainNetViewnet off\ shortLabel Lamprey Net\ subGroups view=net species=s064a clade=c07\ track netPetMar3\ type netAlign petMar3 chainPetMar3\ netRheMac10 Rhesus Net netAlign rheMac10 chainRheMac10 Rhesus (Feb. 2019 (Mmul_10/rheMac10)) Alignment Net 1 18 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Rhesus (Feb. 2019 (Mmul_10/rheMac10)) Alignment Net\ otherDb rheMac10\ parent primateChainNetViewnet off\ shortLabel Rhesus Net\ subGroups view=net species=s021 clade=c01\ track netRheMac10\ type netAlign rheMac10 chainRheMac10\ netFelCat9 Cat Net netAlign felCat9 chainFelCat9 Cat (Nov. 2017 (Felis_catus_9.0/felCat9)) Alignment Net 1 18 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Cat (Nov. 2017 (Felis_catus_9.0/felCat9)) Alignment Net\ otherDb felCat9\ parent placentalChainNetViewnet off\ shortLabel Cat Net\ subGroups view=net species=s037c clade=c01\ track netFelCat9\ type netAlign felCat9 chainFelCat9\ encTfChipPkENCFF297HAX A549 FOXA1 1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in A549 from ENCODE 3 (ENCFF297HAX) 0 18 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in A549 from ENCODE 3 (ENCFF297HAX)\ parent encTfChipPk off\ shortLabel A549 FOXA1 1\ subGroups cellType=A549 factor=FOXA1\ track encTfChipPkENCFF297HAX\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep1LK10_CNhs13343_tpm_rev AorticSmsToFgf2_00hr45minBr1- bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep1 (LK10)_CNhs13343_12645-134G8_reverse 1 18 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12645-134G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep1%20%28LK10%29.CNhs13343.12645-134G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep1 (LK10)_CNhs13343_12645-134G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12645-134G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep1LK10_CNhs13343_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12645-134G8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep1LK10_CNhs13343_ctss_rev AorticSmsToFgf2_00hr45minBr1- bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep1 (LK10)_CNhs13343_12645-134G8_reverse 0 18 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12645-134G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep1%20%28LK10%29.CNhs13343.12645-134G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep1 (LK10)_CNhs13343_12645-134G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12645-134G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep1LK10_CNhs13343_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12645-134G8\ urlLabel FANTOM5 Details:\ gtexCovBrainPutamenbasalganglia Brain Put bas gang bigWig Brain Putamen basal ganglia 0 18 238 238 0 246 246 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1HFI6-0011-R7b-SM-CM2SS.Brain_Putamen_basal_ganglia.RNAseq.bw\ color 238,238,0\ longLabel Brain Putamen basal ganglia\ parent gtexCov\ shortLabel Brain Put bas gang\ track gtexCovBrainPutamenbasalganglia\ cloneEndCH17 CH17 bed 12 CHORI BAC hydatidiform mole 0 18 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel CHORI BAC hydatidiform mole\ parent cloneEndSuper on\ priority 17\ shortLabel CH17\ subGroups source=chori\ track cloneEndCH17\ type bed 12\ visibility hide\ netHprcGCA_018466855v1 HG02559.pat netAlign GCA_018466855.1 chainHprcGCA_018466855v1 HG02559.pat HG02559.alt.pat.f1_v2 (May 2021 GCA_018466855.1_HG02559.alt.pat.f1_v2) HPRC project computed Chain Nets 1 18 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02559.pat HG02559.alt.pat.f1_v2 (May 2021 GCA_018466855.1_HG02559.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018466855.1\ parent hprcChainNetViewnet off\ priority 19\ shortLabel HG02559.pat\ subGroups view=net sample=s019 population=afr subpop=acb hap=pat\ track netHprcGCA_018466855v1\ type netAlign GCA_018466855.1 chainHprcGCA_018466855v1\ LUAD LUAD bigLolly 12 + Lung adenocarcinoma 0 18 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/LUAD.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Lung adenocarcinoma\ parent gdcCancer off\ priority 18\ shortLabel LUAD\ track LUAD\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ wgEncodeRegDnaseUwNhlfPeak NHLF Pk narrowPeak NHLF lung fibroblast DNaseI Peaks from ENCODE 1 18 255 209 85 255 232 170 1 0 0 regulation 1 color 255,209,85\ longLabel NHLF lung fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak on\ shortLabel NHLF Pk\ subGroups view=a_Peaks cellType=NHLF treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwNhlfPeak\ wgEncodeRegDnaseUwNhlfWig NHLF Sg bigWig 0 11719.1 NHLF lung fibroblast DNaseI Signal from ENCODE 0 18 255 209 85 255 232 170 0 0 0 regulation 1 color 255,209,85\ longLabel NHLF lung fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig on\ priority 1.156\ shortLabel NHLF Sg\ subGroups cellType=NHLF treatment=n_a tissue=lung cancer=normal\ table wgEncodeRegDnaseUwNhlfSignal\ track wgEncodeRegDnaseUwNhlfWig\ type bigWig 0 11719.1\ lincRNAsCTSkeletalMuscle SkeletalMuscle bed 5 + lincRNAs from skeletalmuscle 1 18 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from skeletalmuscle\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel SkeletalMuscle\ subGroups view=lincRNAsRefseqExp tissueType=skeletalmuscle\ track lincRNAsCTSkeletalMuscle\ Agilent_Human_Exon_V5_UTRs_Regions SureSel. V5+UTR T bigBed Agilent - SureSelect All Exon V5 + UTRs Target Regions 0 18 255 36 36 255 145 145 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/S04380219_Regions.bb\ color 255,36,36\ longLabel Agilent - SureSelect All Exon V5 + UTRs Target Regions\ parent exomeProbesets off\ shortLabel SureSel. V5+UTR T\ track Agilent_Human_Exon_V5_UTRs_Regions\ type bigBed\ chainPapAnu4 papAnu4 Chain chain papAnu4 Baboon (Apr. 2017 (Panu_3.0/papAnu4)) Chained Alignments 3 19 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Baboon (Apr. 2017 (Panu_3.0/papAnu4)) Chained Alignments\ otherDb papAnu4\ parent primateChainNetViewchain off\ shortLabel papAnu4 Chain\ subGroups view=chain species=s024 clade=c01\ track chainPapAnu4\ type chain papAnu4\ chainEnhLutNer1 Southern sea otter Chain chain enhLutNer1 Southern sea otter (Jun. 2019 (ASM641071v1/enhLutNer1)) Chained Alignments 3 19 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Southern sea otter (Jun. 2019 (ASM641071v1/enhLutNer1)) Chained Alignments\ otherDb enhLutNer1\ parent placentalChainNetViewchain off\ shortLabel Southern sea otter Chain\ subGroups view=chain species=s043a clade=c01\ track chainEnhLutNer1\ type chain enhLutNer1\ encTfChipPkENCFF167BKY A549 FOXA1 2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in A549 from ENCODE 3 (ENCFF167BKY) 0 19 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in A549 from ENCODE 3 (ENCFF167BKY)\ parent encTfChipPk off\ shortLabel A549 FOXA1 2\ subGroups cellType=A549 factor=FOXA1\ track encTfChipPkENCFF167BKY\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep2LK11_CNhs13361_tpm_fwd AorticSmsToFgf2_00hr45minBr2+ bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep2 (LK11)_CNhs13361_12743-135I7_forward 1 19 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12743-135I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep2%20%28LK11%29.CNhs13361.12743-135I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep2 (LK11)_CNhs13361_12743-135I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12743-135I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep2LK11_CNhs13361_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12743-135I7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep2LK11_CNhs13361_ctss_fwd AorticSmsToFgf2_00hr45minBr2+ bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep2 (LK11)_CNhs13361_12743-135I7_forward 0 19 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12743-135I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep2%20%28LK11%29.CNhs13361.12743-135I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep2 (LK11)_CNhs13361_12743-135I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12743-135I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep2LK11_CNhs13361_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12743-135I7\ urlLabel FANTOM5 Details:\ gtexCovBrainSpinalcordcervicalc-1 Brain Spinal cord cerv bigWig Brain Spinal cord cervical c-1 0 19 238 238 0 246 246 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-YFC4-0011-R9a-SM-4SOK4.Brain_Spinal_cord_cervical_c-1.RNAseq.bw\ color 238,238,0\ longLabel Brain Spinal cord cervical c-1\ parent gtexCov\ shortLabel Brain Spinal cord cerv\ track gtexCovBrainSpinalcordcervicalc-1\ cloneEndCOR02 COR02 bed 12 NHGRI-CORIELLE CORIELL-02-F-39-40KB 0 19 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel NHGRI-CORIELLE CORIELL-02-F-39-40KB\ parent cloneEndSuper off\ priority 18\ shortLabel COR02\ subGroups source=corielle\ track cloneEndCOR02\ type bed 12\ visibility hide\ chainHprcGCA_018467005v1 HG02486.pat chain GCA_018467005.1 HG02486.pat HG02486.alt.pat.f1_v2 (May 2021 GCA_018467005.1_HG02486.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 19 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02486.pat HG02486.alt.pat.f1_v2 (May 2021 GCA_018467005.1_HG02486.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018467005.1\ parent hprcChainNetViewchain off\ priority 21\ shortLabel HG02486.pat\ subGroups view=chain sample=s021 population=afr subpop=acb hap=pat\ track chainHprcGCA_018467005v1\ type chain GCA_018467005.1\ LUSC LUSC bigLolly 12 + Lung squamous cell carcinoma 0 19 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/LUSC.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Lung squamous cell carcinoma\ parent gdcCancer off\ priority 19\ shortLabel LUSC\ track LUSC\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ wgEncodeRegDnaseUwNhaPeak NH-A Pk narrowPeak NH-A astrocyte DNaseI Peaks from ENCODE 1 19 255 210 85 255 232 170 1 0 0 regulation 1 color 255,210,85\ longLabel NH-A astrocyte DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel NH-A Pk\ subGroups view=a_Peaks cellType=NH-A treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwNhaPeak\ wgEncodeRegDnaseUwNhaWig NH-A Sg bigWig 0 9132.47 NH-A astrocyte DNaseI Signal from ENCODE 0 19 255 210 85 255 232 170 0 0 0 regulation 1 color 255,210,85\ longLabel NH-A astrocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.15667\ shortLabel NH-A Sg\ subGroups cellType=NH-A treatment=n_a tissue=brain cancer=normal\ table wgEncodeRegDnaseUwNhaSignal\ track wgEncodeRegDnaseUwNhaWig\ type bigWig 0 9132.47\ Agilent_Human_Exon_V6_UTRs_Regions SureSel. V6 +UTR T bigBed Agilent - SureSelect All Exon V6 + UTR r2 Target Regions 0 19 255 36 36 255 145 145 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/S07604624_Regions.bb\ color 255,36,36\ longLabel Agilent - SureSelect All Exon V6 + UTR r2 Target Regions\ parent exomeProbesets off\ shortLabel SureSel. V6 +UTR T\ track Agilent_Human_Exon_V6_UTRs_Regions\ type bigBed\ lincRNAsCTTestes Testes bed 5 + lincRNAs from testes 1 19 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from testes\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Testes\ subGroups view=lincRNAsRefseqExp tissueType=testes\ track lincRNAsCTTestes\ netPapAnu4 papAnu4 Net netAlign papAnu4 chainPapAnu4 Baboon (Apr. 2017 (Panu_3.0/papAnu4)) Alignment Net 1 20 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Baboon (Apr. 2017 (Panu_3.0/papAnu4)) Alignment Net\ otherDb papAnu4\ parent primateChainNetViewnet off\ shortLabel papAnu4 Net\ subGroups view=net species=s024 clade=c01\ track netPapAnu4\ type netAlign papAnu4 chainPapAnu4\ netEnhLutNer1 Southern sea otter Net netAlign enhLutNer1 chainEnhLutNer1 Southern sea otter (Jun. 2019 (ASM641071v1/enhLutNer1)) Alignment Net 1 20 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Southern sea otter (Jun. 2019 (ASM641071v1/enhLutNer1)) Alignment Net\ otherDb enhLutNer1\ parent placentalChainNetViewnet off\ shortLabel Southern sea otter Net\ subGroups view=net species=s043a clade=c01\ track netEnhLutNer1\ type netAlign enhLutNer1 chainEnhLutNer1\ encTfChipPkENCFF520GJC A549 GABPA narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in A549 from ENCODE 3 (ENCFF520GJC) 0 20 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of GABPA in A549 from ENCODE 3 (ENCFF520GJC)\ parent encTfChipPk off\ shortLabel A549 GABPA\ subGroups cellType=A549 factor=GABPA\ track encTfChipPkENCFF520GJC\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep2LK11_CNhs13361_tpm_rev AorticSmsToFgf2_00hr45minBr2- bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep2 (LK11)_CNhs13361_12743-135I7_reverse 1 20 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12743-135I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep2%20%28LK11%29.CNhs13361.12743-135I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep2 (LK11)_CNhs13361_12743-135I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12743-135I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep2LK11_CNhs13361_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12743-135I7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep2LK11_CNhs13361_ctss_rev AorticSmsToFgf2_00hr45minBr2- bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep2 (LK11)_CNhs13361_12743-135I7_reverse 0 20 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12743-135I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep2%20%28LK11%29.CNhs13361.12743-135I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep2 (LK11)_CNhs13361_12743-135I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12743-135I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep2LK11_CNhs13361_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12743-135I7\ urlLabel FANTOM5 Details:\ gtexCovBrainSubstantianigra Brain Subst nigr bigWig Brain Substantia nigra 0 20 238 238 0 246 246 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-Z93S-0011-R2a-SM-4RGNG.Brain_Substantia_nigra.RNAseq.bw\ color 238,238,0\ longLabel Brain Substantia nigra\ parent gtexCov\ shortLabel Brain Subst nigr\ track gtexCovBrainSubstantianigra\ cloneEndCOR2A COR2A bed 12 NHGRI-CORIELLE CORIELL-02A-F-39-40KB 0 20 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel NHGRI-CORIELLE CORIELL-02A-F-39-40KB\ parent cloneEndSuper off\ priority 19\ shortLabel COR2A\ subGroups source=corielle\ track cloneEndCOR2A\ type bed 12\ visibility hide\ wgEncodeRegDnaseUwHbmecPeak HBMEC Pk narrowPeak HBMEC brain microvascular endothelial cell (MEC) DNaseI Peaks from ENCODE 1 20 255 214 85 255 234 170 1 0 0 regulation 1 color 255,214,85\ longLabel HBMEC brain microvascular endothelial cell (MEC) DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HBMEC Pk\ subGroups view=a_Peaks cellType=HBMEC treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHbmecPeak\ wgEncodeRegDnaseUwHbmecWig HBMEC Sg bigWig 0 11394.7 HBMEC brain microvascular endothelial cell (MEC) DNaseI Signal from ENCODE 0 20 255 214 85 255 234 170 0 0 0 regulation 1 color 255,214,85\ longLabel HBMEC brain microvascular endothelial cell (MEC) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.1627\ shortLabel HBMEC Sg\ subGroups cellType=HBMEC treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHbmecSignal\ track wgEncodeRegDnaseUwHbmecWig\ type bigWig 0 11394.7\ netHprcGCA_018467005v1 HG02486.pat netAlign GCA_018467005.1 chainHprcGCA_018467005v1 HG02486.pat HG02486.alt.pat.f1_v2 (May 2021 GCA_018467005.1_HG02486.alt.pat.f1_v2) HPRC project computed Chain Nets 1 20 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02486.pat HG02486.alt.pat.f1_v2 (May 2021 GCA_018467005.1_HG02486.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018467005.1\ parent hprcChainNetViewnet off\ priority 21\ shortLabel HG02486.pat\ subGroups view=net sample=s021 population=afr subpop=acb hap=pat\ track netHprcGCA_018467005v1\ type netAlign GCA_018467005.1 chainHprcGCA_018467005v1\ MESO MESO bigLolly 12 + Mesothelioma 0 20 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/MESO.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Mesothelioma\ parent gdcCancer off\ priority 20\ shortLabel MESO\ track MESO\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ Agilent_Human_Exon_V6_Covered SureSel. V6 P bigBed Agilent - SureSelect All Exon V6 r2 Covered by Probes 0 20 255 36 36 255 145 145 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/S07604514_Covered.bb\ color 255,36,36\ longLabel Agilent - SureSelect All Exon V6 r2 Covered by Probes\ parent exomeProbesets off\ shortLabel SureSel. V6 P\ track Agilent_Human_Exon_V6_Covered\ type bigBed\ lincRNAsCTTestes_R Testes_R bed 5 + lincRNAs from testes_r 1 20 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from testes_r\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Testes_R\ subGroups view=lincRNAsRefseqExp tissueType=testes_r\ track lincRNAsCTTestes_R\ chainChlSab2 Green monkey Chain chain chlSab2 Green monkey (Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2)) Chained Alignments 3 21 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Green monkey (Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2)) Chained Alignments\ otherDb chlSab2\ parent primateChainNetViewchain off\ shortLabel Green monkey Chain\ subGroups view=chain species=s029 clade=c01\ track chainChlSab2\ type chain chlSab2\ chainNeoSch1 Hawaiian monk seal Chain chain neoSch1 Hawaiian monk seal (Jun. 2017 (ASM220157v1/neoSch1)) Chained Alignments 3 21 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Hawaiian monk seal (Jun. 2017 (ASM220157v1/neoSch1)) Chained Alignments\ otherDb neoSch1\ parent placentalChainNetViewchain off\ shortLabel Hawaiian monk seal Chain\ subGroups view=chain species=s044 clade=c01\ track chainNeoSch1\ type chain neoSch1\ encTfChipPkENCFF814DAF A549 HDAC2 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in A549 from ENCODE 3 (ENCFF814DAF) 0 21 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in A549 from ENCODE 3 (ENCFF814DAF)\ parent encTfChipPk off\ shortLabel A549 HDAC2\ subGroups cellType=A549 factor=HDAC2\ track encTfChipPkENCFF814DAF\ wgEncodeRegDnaseUwAg09319Peak AG09319 Pk narrowPeak AG09319 gingival fibroblast DNaseI Peaks from ENCODE 1 21 255 221 85 255 238 170 1 0 0 regulation 1 color 255,221,85\ longLabel AG09319 gingival fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel AG09319 Pk\ subGroups view=a_Peaks cellType=AG09319 treatment=n_a tissue=periodontium cancer=normal\ track wgEncodeRegDnaseUwAg09319Peak\ wgEncodeRegDnaseUwAg09319Wig AG09319 Sg bigWig 0 28099 AG09319 gingival fibroblast DNaseI Signal from ENCODE 0 21 255 221 85 255 238 170 0 0 0 regulation 1 color 255,221,85\ longLabel AG09319 gingival fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.17288\ shortLabel AG09319 Sg\ subGroups cellType=AG09319 treatment=n_a tissue=periodontium cancer=normal\ table wgEncodeRegDnaseUwAg09319Signal\ track wgEncodeRegDnaseUwAg09319Wig\ type bigWig 0 28099\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_tpm_fwd AorticSmsToFgf2_00hr45minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_forward 1 21 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep3%20%28LK12%29.CNhs13571.12841-137B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12841-137B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_ctss_fwd AorticSmsToFgf2_00hr45minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_forward 0 21 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep3%20%28LK12%29.CNhs13571.12841-137B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12841-137B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6\ urlLabel FANTOM5 Details:\ cloneEndbadEnds Bad end mappings bed 12 Clone end placements dropped at UCSC, map distance 3X median library size 0 21 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Clone end placements dropped at UCSC, map distance 3X median library size\ parent cloneEndSuper off\ priority 24\ shortLabel Bad end mappings\ subGroups source=placements\ track cloneEndbadEnds\ type bed 12\ visibility hide\ gtexCovBreastMammaryTissue Breast Mammary bigWig Breast Mammary Tissue 0 21 0 205 205 127 230 230 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-ZT9W-2026-SM-51MRA.Breast_Mammary_Tissue.RNAseq.bw\ color 0,205,205\ longLabel Breast Mammary Tissue\ parent gtexCov\ shortLabel Breast Mammary\ track gtexCovBreastMammaryTissue\ chainHprcGCA_018467165v1 HG01891.pat chain GCA_018467165.1 HG01891.pat HG01891.alt.pat.f1_v2 (May 2021 GCA_018467165.1_HG01891.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 21 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01891.pat HG01891.alt.pat.f1_v2 (May 2021 GCA_018467165.1_HG01891.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018467165.1\ parent hprcChainNetViewchain off\ priority 24\ shortLabel HG01891.pat\ subGroups view=chain sample=s024 population=afr subpop=acb hap=pat\ track chainHprcGCA_018467165v1\ type chain GCA_018467165.1\ OV OV bigLolly 12 + Ovarian serous cystadenocarcinoma 0 21 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/OV.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Ovarian serous cystadenocarcinoma\ parent gdcCancer off\ priority 21\ shortLabel OV\ track OV\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ Agilent_Human_Exon_V6_Regions SureSel. V6 T bigBed Agilent - SureSelect All Exon V6 r2 Target Regions 0 21 255 36 36 255 145 145 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/S07604514_Regions.bb\ color 255,36,36\ longLabel Agilent - SureSelect All Exon V6 r2 Target Regions\ parent exomeProbesets off\ shortLabel SureSel. V6 T\ track Agilent_Human_Exon_V6_Regions\ type bigBed\ lincRNAsCTThyroid Thyroid bed 5 + lincRNAs from thyroid 1 21 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from thyroid\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Thyroid\ subGroups view=lincRNAsRefseqExp tissueType=thyroid\ track lincRNAsCTThyroid\ netChlSab2 Green monkey Net netAlign chlSab2 chainChlSab2 Green monkey (Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2)) Alignment Net 1 22 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Green monkey (Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2)) Alignment Net\ otherDb chlSab2\ parent primateChainNetViewnet off\ shortLabel Green monkey Net\ subGroups view=net species=s029 clade=c01\ track netChlSab2\ type netAlign chlSab2 chainChlSab2\ netNeoSch1 Hawaiian monk seal Net netAlign neoSch1 chainNeoSch1 Hawaiian monk seal (Jun. 2017 (ASM220157v1/neoSch1)) Alignment Net 1 22 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Hawaiian monk seal (Jun. 2017 (ASM220157v1/neoSch1)) Alignment Net\ otherDb neoSch1\ parent placentalChainNetViewnet off\ shortLabel Hawaiian monk seal Net\ subGroups view=net species=s044 clade=c01\ track netNeoSch1\ type netAlign neoSch1 chainNeoSch1\ encTfChipPkENCFF127HJG A549 JUN narrowPeak Transcription Factor ChIP-seq Peaks of JUN in A549 from ENCODE 3 (ENCFF127HJG) 0 22 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of JUN in A549 from ENCODE 3 (ENCFF127HJG)\ parent encTfChipPk off\ shortLabel A549 JUN\ subGroups cellType=A549 factor=JUN\ track encTfChipPkENCFF127HJG\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_tpm_rev AorticSmsToFgf2_00hr45minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_reverse 1 22 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep3%20%28LK12%29.CNhs13571.12841-137B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12841-137B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_ctss_rev AorticSmsToFgf2_00hr45minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_reverse 0 22 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep3%20%28LK12%29.CNhs13571.12841-137B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12841-137B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6\ urlLabel FANTOM5 Details:\ gtexCovCellsEBV-transformedlymphocytes Cells EBV lymphoc bigWig Cells EBV-transformed lymphocytes 0 22 238 130 238 246 192 246 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1122O-0003-SM-5Q5DL.Cells_EBV-transformed_lymphocytes.RNAseq.bw\ color 238,130,238\ longLabel Cells EBV-transformed lymphocytes\ parent gtexCov\ shortLabel Cells EBV lymphoc\ track gtexCovCellsEBV-transformedlymphocytes\ cloneEndcoverageForward Coverage forward bigWig 0 5377 Clone end placements overlap coverage on the forward strand 2 22 0 0 0 127 127 127 0 0 0 map 0 alwaysZero on\ autoScale on\ longLabel Clone end placements overlap coverage on the forward strand\ maxHeightPixels 128:35:16\ parent cloneEndSuper off\ priority 25\ shortLabel Coverage forward\ subGroups source=placements\ track cloneEndcoverageForward\ type bigWig 0 5377\ visibility full\ windowingFunction mean\ netHprcGCA_018467165v1 HG01891.pat netAlign GCA_018467165.1 chainHprcGCA_018467165v1 HG01891.pat HG01891.alt.pat.f1_v2 (May 2021 GCA_018467165.1_HG01891.alt.pat.f1_v2) HPRC project computed Chain Nets 1 22 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01891.pat HG01891.alt.pat.f1_v2 (May 2021 GCA_018467165.1_HG01891.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018467165.1\ parent hprcChainNetViewnet off\ priority 24\ shortLabel HG01891.pat\ subGroups view=net sample=s024 population=afr subpop=acb hap=pat\ track netHprcGCA_018467165v1\ type netAlign GCA_018467165.1 chainHprcGCA_018467165v1\ wgEncodeRegDnaseUwHpdlfPeak HPdLF Pk narrowPeak HPdLF periodontal ligament fibroblast DNaseI Peaks from ENCODE 1 22 255 224 85 255 239 170 1 0 0 regulation 1 color 255,224,85\ longLabel HPdLF periodontal ligament fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HPdLF Pk\ subGroups view=a_Peaks cellType=HPdLF treatment=n_a tissue=periodontium cancer=normal\ track wgEncodeRegDnaseUwHpdlfPeak\ wgEncodeRegDnaseUwHpdlfWig HPdLF Sg bigWig 0 11009.1 HPdLF periodontal ligament fibroblast DNaseI Signal from ENCODE 0 22 255 224 85 255 239 170 0 0 0 regulation 1 color 255,224,85\ longLabel HPdLF periodontal ligament fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.17804\ shortLabel HPdLF Sg\ subGroups cellType=HPdLF treatment=n_a tissue=periodontium cancer=normal\ table wgEncodeRegDnaseUwHpdlfSignal\ track wgEncodeRegDnaseUwHpdlfWig\ type bigWig 0 11009.1\ PAAD PAAD bigLolly 12 + Pancreatic adenocarcinoma 0 22 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/PAAD.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Pancreatic adenocarcinoma\ parent gdcCancer off\ priority 22\ shortLabel PAAD\ track PAAD\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ Agilent_Human_Exon_V6_COSMIC_Covered SureSel. V6+COSMIC P bigBed Agilent - SureSelect All Exon V6 + COSMIC r2 Covered by Probes 0 22 255 36 36 255 145 145 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/S07604715_Covered.bb\ color 255,36,36\ longLabel Agilent - SureSelect All Exon V6 + COSMIC r2 Covered by Probes\ parent exomeProbesets off\ shortLabel SureSel. V6+COSMIC P\ track Agilent_Human_Exon_V6_COSMIC_Covered\ type bigBed\ lincRNAsCTWhiteBloodCell WhiteBloodCell bed 5 + lincRNAs from whitebloodcell 1 22 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from whitebloodcell\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel WhiteBloodCell\ subGroups view=lincRNAsRefseqExp tissueType=whitebloodcell\ track lincRNAsCTWhiteBloodCell\ chainSaiBol1 saiBol1 Chain chain saiBol1 Squirrel monkey (Oct. 2011 (Broad/saiBol1)) Chained Alignments 3 23 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Squirrel monkey (Oct. 2011 (Broad/saiBol1)) Chained Alignments\ otherDb saiBol1\ parent primateChainNetViewchain off\ shortLabel saiBol1 Chain\ subGroups view=chain species=s032 clade=c02\ track chainSaiBol1\ type chain saiBol1\ chainBosTau9 Cow Chain chain bosTau9 Cow (Apr. 2018 (ARS-UCD1.2/bosTau9)) Chained Alignments 3 23 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Cow (Apr. 2018 (ARS-UCD1.2/bosTau9)) Chained Alignments\ otherDb bosTau9\ parent placentalChainNetViewchain off\ shortLabel Cow Chain\ subGroups view=chain species=s051a clade=c02\ track chainBosTau9\ type chain bosTau9\ phastConsElements100way 100 Vert. El bed 5 . 100 vertebrates Conserved Elements 0 23 110 10 40 182 132 147 0 0 0 compGeno 1 color 110,10,40\ longLabel 100 vertebrates Conserved Elements\ noInherit on\ parent cons100wayViewelements off\ priority 23\ shortLabel 100 Vert. El\ subGroups view=elements\ track phastConsElements100way\ type bed 5 .\ phastConsElements30way 30-way El bed 5 . 30 mammals Conserved Elements (27 primates) 1 23 110 10 40 182 132 147 0 0 0 compGeno 1 color 110,10,40\ longLabel 30 mammals Conserved Elements (27 primates)\ noInherit on\ parent cons30wayViewelements on\ priority 23\ shortLabel 30-way El\ subGroups view=elements\ track phastConsElements30way\ type bed 5 .\ encTfChipPkENCFF587VEY A549 JUND narrowPeak Transcription Factor ChIP-seq Peaks of JUND in A549 from ENCODE 3 (ENCFF587VEY) 0 23 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of JUND in A549 from ENCODE 3 (ENCFF587VEY)\ parent encTfChipPk off\ shortLabel A549 JUND\ subGroups cellType=A549 factor=JUND\ track encTfChipPkENCFF587VEY\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep1LK13_CNhs12741_tpm_fwd AorticSmsToFgf2_01hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep1 (LK13)_CNhs12741_12646-134G9_forward 1 23 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12646-134G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep1%20%28LK13%29.CNhs12741.12646-134G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep1 (LK13)_CNhs12741_12646-134G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12646-134G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_01hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep1LK13_CNhs12741_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12646-134G9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep1LK13_CNhs12741_ctss_fwd AorticSmsToFgf2_01hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep1 (LK13)_CNhs12741_12646-134G9_forward 0 23 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12646-134G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep1%20%28LK13%29.CNhs12741.12646-134G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep1 (LK13)_CNhs12741_12646-134G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12646-134G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_01hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep1LK13_CNhs12741_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12646-134G9\ urlLabel FANTOM5 Details:\ gtexCovCellsCulturedfibroblasts Cells fibrobl cult bigWig Cells Cultured fibroblasts 0 23 154 192 205 204 223 230 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-117XS-0008-SM-5Q5DQ.Cells_Cultured_fibroblasts.RNAseq.bw\ color 154,192,205\ longLabel Cells Cultured fibroblasts\ parent gtexCov\ shortLabel Cells fibrobl cult\ track gtexCovCellsCulturedfibroblasts\ cloneEndcoverageReverse Coverage reverse bigWig 0 4112 Clone end placements overlap coverage on the reverse strand 2 23 0 0 0 127 127 127 0 0 0 map 0 alwaysZero on\ autoScale on\ longLabel Clone end placements overlap coverage on the reverse strand\ maxHeightPixels 128:35:16\ negateValues 1\ parent cloneEndSuper off\ priority 26\ shortLabel Coverage reverse\ subGroups source=placements\ track cloneEndcoverageReverse\ type bigWig 0 4112\ visibility full\ windowingFunction mean\ wgEncodeRegDnaseUwHcfPeak HCF Pk narrowPeak HCF cardiac fibroblast DNaseI Peaks from ENCODE 1 23 255 229 85 255 242 170 1 0 0 regulation 1 color 255,229,85\ longLabel HCF cardiac fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HCF Pk\ subGroups view=a_Peaks cellType=HCF treatment=n_a tissue=heart cancer=normal\ track wgEncodeRegDnaseUwHcfPeak\ wgEncodeRegDnaseUwHcfWig HCF Sg bigWig 0 19295.8 HCF cardiac fibroblast DNaseI Signal from ENCODE 0 23 255 229 85 255 242 170 0 0 0 regulation 1 color 255,229,85\ longLabel HCF cardiac fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.18546\ shortLabel HCF Sg\ subGroups cellType=HCF treatment=n_a tissue=heart cancer=normal\ table wgEncodeRegDnaseUwHcfSignal\ track wgEncodeRegDnaseUwHcfWig\ type bigWig 0 19295.8\ chainHprcGCA_018505855v1 HG02055.pat chain GCA_018505855.1 HG02055.pat HG02055.alt.pat.f1_v2 (May 2021 GCA_018505855.1_HG02055.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 23 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02055.pat HG02055.alt.pat.f1_v2 (May 2021 GCA_018505855.1_HG02055.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018505855.1\ parent hprcChainNetViewchain off\ priority 26\ shortLabel HG02055.pat\ subGroups view=chain sample=s026 population=afr subpop=acb hap=pat\ track chainHprcGCA_018505855v1\ type chain GCA_018505855.1\ PCPG PCPG bigLolly 12 + Pheochromocytoma and Paraganglioma 0 23 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/PCPG.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Pheochromocytoma and Paraganglioma\ parent gdcCancer off\ priority 23\ shortLabel PCPG\ track PCPG\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ Agilent_Human_Exon_V6_COSMIC_Regions SureSel. V6+COSMIC T bigBed Agilent - SureSelect All Exon V6 + COSMIC r2 Target Regions 0 23 255 36 36 255 145 145 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/S07604715_Regions.bb\ color 255,36,36\ longLabel Agilent - SureSelect All Exon V6 + COSMIC r2 Target Regions\ parent exomeProbesets off\ shortLabel SureSel. V6+COSMIC T\ track Agilent_Human_Exon_V6_COSMIC_Regions\ type bigBed\ netSaiBol1 saiBol1 Net netAlign saiBol1 chainSaiBol1 Squirrel monkey (Oct. 2011 (Broad/saiBol1)) Alignment Net 1 24 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Squirrel monkey (Oct. 2011 (Broad/saiBol1)) Alignment Net\ otherDb saiBol1\ parent primateChainNetViewnet off\ shortLabel saiBol1 Net\ subGroups view=net species=s032 clade=c02\ track netSaiBol1\ type netAlign saiBol1 chainSaiBol1\ netBosTau9 Cow Net netAlign bosTau9 chainBosTau9 Cow (Apr. 2018 (ARS-UCD1.2/bosTau9)) Alignment Net 1 24 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Cow (Apr. 2018 (ARS-UCD1.2/bosTau9)) Alignment Net\ otherDb bosTau9\ parent placentalChainNetViewnet off\ shortLabel Cow Net\ subGroups view=net species=s051a clade=c02\ track netBosTau9\ type netAlign bosTau9 chainBosTau9\ encTfChipPkENCFF316CBQ A549 KDM1A narrowPeak Transcription Factor ChIP-seq Peaks of KDM1A in A549 from ENCODE 3 (ENCFF316CBQ) 0 24 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of KDM1A in A549 from ENCODE 3 (ENCFF316CBQ)\ parent encTfChipPk off\ shortLabel A549 KDM1A\ subGroups cellType=A549 factor=KDM1A\ track encTfChipPkENCFF316CBQ\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep1LK13_CNhs12741_tpm_rev AorticSmsToFgf2_01hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep1 (LK13)_CNhs12741_12646-134G9_reverse 1 24 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12646-134G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep1%20%28LK13%29.CNhs12741.12646-134G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep1 (LK13)_CNhs12741_12646-134G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12646-134G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_01hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep1LK13_CNhs12741_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12646-134G9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep1LK13_CNhs12741_ctss_rev AorticSmsToFgf2_01hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep1 (LK13)_CNhs12741_12646-134G9_reverse 0 24 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12646-134G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep1%20%28LK13%29.CNhs12741.12646-134G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep1 (LK13)_CNhs12741_12646-134G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12646-134G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_01hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep1LK13_CNhs12741_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12646-134G9\ urlLabel FANTOM5 Details:\ gtexCovCervixEctocervix Cervix Ectocerv bigWig Cervix Ectocervix 0 24 238 213 210 246 234 232 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-S341-1126-SM-4AD6T.Cervix_Ectocervix.RNAseq.bw\ color 238,213,210\ longLabel Cervix Ectocervix\ parent gtexCov\ shortLabel Cervix Ectocerv\ track gtexCovCervixEctocervix\ wgEncodeRegDnaseUwHcmPeak HCM Pk narrowPeak HCM cardiac myocyte DNaseI Peaks from ENCODE 1 24 255 230 85 255 242 170 1 0 0 regulation 1 color 255,230,85\ longLabel HCM cardiac myocyte DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HCM Pk\ subGroups view=a_Peaks cellType=HCM treatment=n_a tissue=heart cancer=normal\ track wgEncodeRegDnaseUwHcmPeak\ wgEncodeRegDnaseUwHcmWig HCM Sg bigWig 0 14370.2 HCM cardiac myocyte DNaseI Signal from ENCODE 0 24 255 230 85 255 242 170 0 0 0 regulation 1 color 255,230,85\ longLabel HCM cardiac myocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.18728\ shortLabel HCM Sg\ subGroups cellType=HCM treatment=n_a tissue=heart cancer=normal\ table wgEncodeRegDnaseUwHcmSignal\ track wgEncodeRegDnaseUwHcmWig\ type bigWig 0 14370.2\ netHprcGCA_018505855v1 HG02055.pat netAlign GCA_018505855.1 chainHprcGCA_018505855v1 HG02055.pat HG02055.alt.pat.f1_v2 (May 2021 GCA_018505855.1_HG02055.alt.pat.f1_v2) HPRC project computed Chain Nets 1 24 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02055.pat HG02055.alt.pat.f1_v2 (May 2021 GCA_018505855.1_HG02055.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018505855.1\ parent hprcChainNetViewnet off\ priority 26\ shortLabel HG02055.pat\ subGroups view=net sample=s026 population=afr subpop=acb hap=pat\ track netHprcGCA_018505855v1\ type netAlign GCA_018505855.1 chainHprcGCA_018505855v1\ cloneEndmultipleMaps Multiple mappings bed 12 Clone end placements that map to multiple locations in the genome 0 24 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Clone end placements that map to multiple locations in the genome\ parent cloneEndSuper off\ priority 23\ shortLabel Multiple mappings\ subGroups source=placements\ track cloneEndmultipleMaps\ type bed 12\ visibility hide\ PRAD PRAD bigLolly 12 + Prostate adenocarcinoma 0 24 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/PRAD.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Prostate adenocarcinoma\ parent gdcCancer off\ priority 24\ shortLabel PRAD\ track PRAD\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ Agilent_Human_Exon_V6_UTRs_Covered SureSel. V6+UTR P bigBed Agilent - SureSelect All Exon V6 + UTR r2 Covered by Probes 0 24 255 36 36 255 145 145 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/S07604624_Covered.bb\ color 255,36,36\ longLabel Agilent - SureSelect All Exon V6 + UTR r2 Covered by Probes\ parent exomeProbesets off\ shortLabel SureSel. V6+UTR P\ track Agilent_Human_Exon_V6_UTRs_Covered\ type bigBed\ chainCalJac4 Marmoset Chain chain calJac4 Marmoset (May 2020 (Callithrix_jacchus_cj1700_1.1/calJac4)) Chained Alignments 3 25 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Marmoset (May 2020 (Callithrix_jacchus_cj1700_1.1/calJac4)) Chained Alignments\ otherDb calJac4\ parent primateChainNetViewchain off\ shortLabel Marmoset Chain\ subGroups view=chain species=s034a clade=c02\ track chainCalJac4\ type chain calJac4\ chainOviAri4 Sheep Chain chain oviAri4 Sheep (Nov. 2015 (Oar_v4.0/oviAri4)) Chained Alignments 3 25 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Sheep (Nov. 2015 (Oar_v4.0/oviAri4)) Chained Alignments\ otherDb oviAri4\ parent placentalChainNetViewchain off\ shortLabel Sheep Chain\ subGroups view=chain species=s065b clade=c02\ track chainOviAri4\ type chain oviAri4\ encTfChipPkENCFF149INM A549 KDM5A narrowPeak Transcription Factor ChIP-seq Peaks of KDM5A in A549 from ENCODE 3 (ENCFF149INM) 0 25 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of KDM5A in A549 from ENCODE 3 (ENCFF149INM)\ parent encTfChipPk off\ shortLabel A549 KDM5A\ subGroups cellType=A549 factor=KDM5A\ track encTfChipPkENCFF149INM\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep3LK15_CNhs13683_tpm_fwd AorticSmsToFgf2_01hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep3 (LK15)_CNhs13683_12842-137B7_forward 1 25 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12842-137B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep3%20%28LK15%29.CNhs13683.12842-137B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep3 (LK15)_CNhs13683_12842-137B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12842-137B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_01hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep3LK15_CNhs13683_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12842-137B7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep3LK15_CNhs13683_ctss_fwd AorticSmsToFgf2_01hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep3 (LK15)_CNhs13683_12842-137B7_forward 0 25 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12842-137B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep3%20%28LK15%29.CNhs13683.12842-137B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep3 (LK15)_CNhs13683_12842-137B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12842-137B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_01hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep3LK15_CNhs13683_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12842-137B7\ urlLabel FANTOM5 Details:\ gtexCovCervixEndocervix Cervix Endocerv bigWig Cervix Endocervix 0 25 238 213 210 246 234 232 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-ZPIC-1326-SM-DO91Y.Cervix_Endocervix.RNAseq.bw\ color 238,213,210\ longLabel Cervix Endocervix\ parent gtexCov\ shortLabel Cervix Endocerv\ track gtexCovCervixEndocervix\ chainHprcGCA_018505865v1 HG02109.pat chain GCA_018505865.1 HG02109.pat HG02109.alt.pat.f1_v2 (May 2021 GCA_018505865.1_HG02109.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 25 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02109.pat HG02109.alt.pat.f1_v2 (May 2021 GCA_018505865.1_HG02109.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018505865.1\ parent hprcChainNetViewchain off\ priority 27\ shortLabel HG02109.pat\ subGroups view=chain sample=s027 population=afr subpop=acb hap=pat\ track chainHprcGCA_018505865v1\ type chain GCA_018505865.1\ wgEncodeRegDnaseUwHpafPeak HPAF Pk narrowPeak HPAF pulmonary artery fibroblast DNaseI Peaks from ENCODE 1 25 255 232 85 255 243 170 1 0 0 regulation 1 color 255,232,85\ longLabel HPAF pulmonary artery fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HPAF Pk\ subGroups view=a_Peaks cellType=HPAF treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHpafPeak\ wgEncodeRegDnaseUwHpafWig HPAF Sg bigWig 0 11225.6 HPAF pulmonary artery fibroblast DNaseI Signal from ENCODE 0 25 255 232 85 255 243 170 0 0 0 regulation 1 color 255,232,85\ longLabel HPAF pulmonary artery fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.18958\ shortLabel HPAF Sg\ subGroups cellType=HPAF treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHpafSignal\ track wgEncodeRegDnaseUwHpafWig\ type bigWig 0 11225.6\ READ READ bigLolly 12 + Rectum adenocarcinoma 0 25 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/READ.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Rectum adenocarcinoma\ parent gdcCancer off\ priority 25\ shortLabel READ\ track READ\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ cloneEndRP11 RP11 bed 12 RPCI BAC library 11 0 25 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel RPCI BAC library 11\ parent cloneEndSuper on\ priority 21\ shortLabel RP11\ subGroups source=rpci\ track cloneEndRP11\ type bed 12\ visibility hide\ Agilent_Human_Exon_V7_Covered SureSel. V7 P bigBed Agilent - SureSelect All Exon V7 Covered by Probes 0 25 255 36 36 255 145 145 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/S31285117_Covered.bb\ color 255,36,36\ longLabel Agilent - SureSelect All Exon V7 Covered by Probes\ parent exomeProbesets on\ shortLabel SureSel. V7 P\ track Agilent_Human_Exon_V7_Covered\ type bigBed\ netCalJac4 Marmoset Net netAlign calJac4 chainCalJac4 Marmoset (May 2020 (Callithrix_jacchus_cj1700_1.1/calJac4)) Alignment Net 1 26 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Marmoset (May 2020 (Callithrix_jacchus_cj1700_1.1/calJac4)) Alignment Net\ otherDb calJac4\ parent primateChainNetViewnet on\ shortLabel Marmoset Net\ subGroups view=net species=s034a clade=c02\ track netCalJac4\ type netAlign calJac4 chainCalJac4\ netOviAri4 Sheep Net netAlign oviAri4 chainOviAri4 Sheep (Nov. 2015 (Oar_v4.0/oviAri4)) Alignment Net 1 26 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Sheep (Nov. 2015 (Oar_v4.0/oviAri4)) Alignment Net\ otherDb oviAri4\ parent placentalChainNetViewnet off\ shortLabel Sheep Net\ subGroups view=net species=s065b clade=c02\ track netOviAri4\ type netAlign oviAri4 chainOviAri4\ encTfChipPkENCFF813WJW A549 MAFK narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in A549 from ENCODE 3 (ENCFF813WJW) 0 26 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of MAFK in A549 from ENCODE 3 (ENCFF813WJW)\ parent encTfChipPk off\ shortLabel A549 MAFK\ subGroups cellType=A549 factor=MAFK\ track encTfChipPkENCFF813WJW\ wgEncodeRegDnaseUwAoafPeak AoAF Pk narrowPeak AoAF aorta fibroblast DNaseI Peaks from ENCODE 1 26 255 236 85 255 245 170 1 0 0 regulation 1 color 255,236,85\ longLabel AoAF aorta fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel AoAF Pk\ subGroups view=a_Peaks cellType=AoAF treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwAoafPeak\ wgEncodeRegDnaseUwAoafWig AoAF Sg bigWig 0 10369.5 AoAF aorta fibroblast DNaseI Signal from ENCODE 0 26 255 236 85 255 245 170 0 0 0 regulation 1 color 255,236,85\ longLabel AoAF aorta fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.19489\ shortLabel AoAF Sg\ subGroups cellType=AoAF treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwAoafSignal\ track wgEncodeRegDnaseUwAoafWig\ type bigWig 0 10369.5\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep3LK15_CNhs13683_tpm_rev AorticSmsToFgf2_01hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep3 (LK15)_CNhs13683_12842-137B7_reverse 1 26 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12842-137B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep3%20%28LK15%29.CNhs13683.12842-137B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep3 (LK15)_CNhs13683_12842-137B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12842-137B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_01hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep3LK15_CNhs13683_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12842-137B7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep3LK15_CNhs13683_ctss_rev AorticSmsToFgf2_01hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep3 (LK15)_CNhs13683_12842-137B7_reverse 0 26 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12842-137B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep3%20%28LK15%29.CNhs13683.12842-137B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep3 (LK15)_CNhs13683_12842-137B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12842-137B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_01hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep3LK15_CNhs13683_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12842-137B7\ urlLabel FANTOM5 Details:\ gtexCovColonSigmoid Colon Sigmoid bigWig Colon Sigmoid 0 26 205 183 158 230 219 206 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1KXAM-1926-SM-D3LAG.Colon_Sigmoid.RNAseq.bw\ color 205,183,158\ longLabel Colon Sigmoid\ parent gtexCov\ shortLabel Colon Sigmoid\ track gtexCovColonSigmoid\ netHprcGCA_018505865v1 HG02109.pat netAlign GCA_018505865.1 chainHprcGCA_018505865v1 HG02109.pat HG02109.alt.pat.f1_v2 (May 2021 GCA_018505865.1_HG02109.alt.pat.f1_v2) HPRC project computed Chain Nets 1 26 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02109.pat HG02109.alt.pat.f1_v2 (May 2021 GCA_018505865.1_HG02109.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018505865.1\ parent hprcChainNetViewnet off\ priority 27\ shortLabel HG02109.pat\ subGroups view=net sample=s027 population=afr subpop=acb hap=pat\ track netHprcGCA_018505865v1\ type netAlign GCA_018505865.1 chainHprcGCA_018505865v1\ SARC SARC bigLolly 12 + Sarcoma 0 26 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/SARC.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Sarcoma\ parent gdcCancer off\ priority 26\ shortLabel SARC\ track SARC\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ Agilent_Human_Exon_V7_Regions SureSel. V7 T bigBed Agilent - SureSelect All Exon V7 Target Regions 0 26 255 36 36 255 145 145 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/S31285117_Regions.bb\ color 255,36,36\ longLabel Agilent - SureSelect All Exon V7 Target Regions\ parent exomeProbesets on\ shortLabel SureSel. V7 T\ track Agilent_Human_Exon_V7_Regions\ type bigBed\ cloneEndWI2 WI2 bed 12 WIBR-2 Fosmid library 0 26 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel WIBR-2 Fosmid library\ parent cloneEndSuper off\ priority 22\ shortLabel WI2\ subGroups source=wibr\ track cloneEndWI2\ type bed 12\ visibility hide\ chainTarSyr2 Tarsier Chain chain tarSyr2 Tarsier (Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2)) Chained Alignments 3 27 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Tarsier (Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2)) Chained Alignments\ otherDb tarSyr2\ parent primateChainNetViewchain off\ shortLabel Tarsier Chain\ subGroups view=chain species=s037 clade=c02\ track chainTarSyr2\ type chain tarSyr2\ chainSusScr11 Pig Chain chain susScr11 Pig (Feb. 2017 (Sscrofa11.1/susScr11)) Chained Alignments 3 27 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Pig (Feb. 2017 (Sscrofa11.1/susScr11)) Chained Alignments\ otherDb susScr11\ parent placentalChainNetViewchain off\ shortLabel Pig Chain\ subGroups view=chain species=s069 clade=c02\ track chainSusScr11\ type chain susScr11\ encTfChipPkENCFF542GMN A549 MYC narrowPeak Transcription Factor ChIP-seq Peaks of MYC in A549 from ENCODE 3 (ENCFF542GMN) 0 27 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of MYC in A549 from ENCODE 3 (ENCFF542GMN)\ parent encTfChipPk off\ shortLabel A549 MYC\ subGroups cellType=A549 factor=MYC\ track encTfChipPkENCFF542GMN\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep1LK16_CNhs13344_tpm_fwd AorticSmsToFgf2_02hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep1 (LK16)_CNhs13344_12647-134H1_forward 1 27 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12647-134H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep1%20%28LK16%29.CNhs13344.12647-134H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep1 (LK16)_CNhs13344_12647-134H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12647-134H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_02hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep1LK16_CNhs13344_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12647-134H1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep1LK16_CNhs13344_ctss_fwd AorticSmsToFgf2_02hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep1 (LK16)_CNhs13344_12647-134H1_forward 0 27 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12647-134H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep1%20%28LK16%29.CNhs13344.12647-134H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep1 (LK16)_CNhs13344_12647-134H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12647-134H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_02hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep1LK16_CNhs13344_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12647-134H1\ urlLabel FANTOM5 Details:\ gtexCovColonTransverse Colon Transverse bigWig Colon Transverse 0 27 238 197 145 246 226 200 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1IDJC-1326-SM-CL53H.Colon_Transverse.RNAseq.bw\ color 238,197,145\ longLabel Colon Transverse\ parent gtexCov\ shortLabel Colon Transverse\ track gtexCovColonTransverse\ wgEncodeRegDnaseUwHcpepicPeak HCPEpiC Pk narrowPeak HCPEpiC choroid plexus epithelium DNaseI Peaks from ENCODE 1 27 255 242 85 255 248 170 1 0 0 regulation 1 color 255,242,85\ longLabel HCPEpiC choroid plexus epithelium DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HCPEpiC Pk\ subGroups view=a_Peaks cellType=HCPEpiC treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwHcpepicPeak\ wgEncodeRegDnaseUwHcpepicWig HCPEpiC Sg bigWig 0 13163.5 HCPEpiC choroid plexus epithelium DNaseI Signal from ENCODE 0 27 255 242 85 255 248 170 0 0 0 regulation 1 color 255,242,85\ longLabel HCPEpiC choroid plexus epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.20382\ shortLabel HCPEpiC Sg\ subGroups cellType=HCPEpiC treatment=n_a tissue=brain cancer=normal\ table wgEncodeRegDnaseUwHcpepicSignal\ track wgEncodeRegDnaseUwHcpepicWig\ type bigWig 0 13163.5\ chainHprcGCA_018852595v1 HG02145.pat chain GCA_018852595.1 HG02145.pat HG02145.alt.pat.f1_v2 (Jun. 2021 GCA_018852595.1_HG02145.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 27 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02145.pat HG02145.alt.pat.f1_v2 (Jun. 2021 GCA_018852595.1_HG02145.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018852595.1\ parent hprcChainNetViewchain off\ priority 30\ shortLabel HG02145.pat\ subGroups view=chain sample=s030 population=afr subpop=acb hap=pat\ track chainHprcGCA_018852595v1\ type chain GCA_018852595.1\ SKCM SKCM bigLolly 12 + Skin Cutaneous Melanoma 0 27 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/SKCM.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Skin Cutaneous Melanoma\ parent gdcCancer off\ priority 27\ shortLabel SKCM\ track SKCM\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ Twist_Comp_Exome_Target Twist Compr. T bigBed Twist - Comprehensive Exome Panel Target Regions 1 27 254 97 0 254 176 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/Twist_ComprehensiveExome_targets_hg38.bb\ color 254,97,0\ longLabel Twist - Comprehensive Exome Panel Target Regions\ parent exomeProbesets on\ shortLabel Twist Compr. T\ track Twist_Comp_Exome_Target\ type bigBed\ visibility dense\ netTarSyr2 Tarsier Net netAlign tarSyr2 chainTarSyr2 Tarsier (Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2)) Alignment Net 1 28 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Tarsier (Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2)) Alignment Net\ otherDb tarSyr2\ parent primateChainNetViewnet off\ shortLabel Tarsier Net\ subGroups view=net species=s037 clade=c02\ track netTarSyr2\ type netAlign tarSyr2 chainTarSyr2\ netSusScr11 Pig Net netAlign susScr11 chainSusScr11 Pig (Feb. 2017 (Sscrofa11.1/susScr11)) Alignment Net 1 28 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Pig (Feb. 2017 (Sscrofa11.1/susScr11)) Alignment Net\ otherDb susScr11\ parent placentalChainNetViewnet on\ shortLabel Pig Net\ subGroups view=net species=s069 clade=c02\ track netSusScr11\ type netAlign susScr11 chainSusScr11\ encTfChipPkENCFF418TUX A549 NFE2L2 narrowPeak Transcription Factor ChIP-seq Peaks of NFE2L2 in A549 from ENCODE 3 (ENCFF418TUX) 0 28 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of NFE2L2 in A549 from ENCODE 3 (ENCFF418TUX)\ parent encTfChipPk off\ shortLabel A549 NFE2L2\ subGroups cellType=A549 factor=NFE2L2\ track encTfChipPkENCFF418TUX\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep1LK16_CNhs13344_tpm_rev AorticSmsToFgf2_02hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep1 (LK16)_CNhs13344_12647-134H1_reverse 1 28 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12647-134H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep1%20%28LK16%29.CNhs13344.12647-134H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep1 (LK16)_CNhs13344_12647-134H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12647-134H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_02hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep1LK16_CNhs13344_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12647-134H1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep1LK16_CNhs13344_ctss_rev AorticSmsToFgf2_02hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep1 (LK16)_CNhs13344_12647-134H1_reverse 0 28 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12647-134H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep1%20%28LK16%29.CNhs13344.12647-134H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep1 (LK16)_CNhs13344_12647-134H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12647-134H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_02hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep1LK16_CNhs13344_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12647-134H1\ urlLabel FANTOM5 Details:\ gtexCovEsophagusGastroesophagealJunction Esoph Gastroes Junc bigWig Esophagus Gastroesophageal Junction 0 28 139 115 85 197 185 170 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1I1GU-1226-SM-A9SKT.Esophagus_Gastroesophageal_Junction.RNAseq.bw\ color 139,115,85\ longLabel Esophagus Gastroesophageal Junction\ parent gtexCov\ shortLabel Esoph Gastroes Junc\ track gtexCovEsophagusGastroesophagealJunction\ netHprcGCA_018852595v1 HG02145.pat netAlign GCA_018852595.1 chainHprcGCA_018852595v1 HG02145.pat HG02145.alt.pat.f1_v2 (Jun. 2021 GCA_018852595.1_HG02145.alt.pat.f1_v2) HPRC project computed Chain Nets 1 28 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02145.pat HG02145.alt.pat.f1_v2 (Jun. 2021 GCA_018852595.1_HG02145.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018852595.1\ parent hprcChainNetViewnet off\ priority 30\ shortLabel HG02145.pat\ subGroups view=net sample=s030 population=afr subpop=acb hap=pat\ track netHprcGCA_018852595v1\ type netAlign GCA_018852595.1 chainHprcGCA_018852595v1\ wgEncodeRegDnaseUwHpfPeak HPF Pk narrowPeak HPF pulmonary fibroblast DNaseI Peaks from ENCODE 1 28 255 247 85 255 251 170 1 0 0 regulation 1 color 255,247,85\ longLabel HPF pulmonary fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HPF Pk\ subGroups view=a_Peaks cellType=HPF treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwHpfPeak\ wgEncodeRegDnaseUwHpfWig HPF Sg bigWig 0 11172 HPF pulmonary fibroblast DNaseI Signal from ENCODE 0 28 255 247 85 255 251 170 0 0 0 regulation 1 color 255,247,85\ longLabel HPF pulmonary fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.21201\ shortLabel HPF Sg\ subGroups cellType=HPF treatment=n_a tissue=lung cancer=normal\ table wgEncodeRegDnaseUwHpfSignal\ track wgEncodeRegDnaseUwHpfWig\ type bigWig 0 11172\ STAD STAD bigLolly 12 + Stomach adenocarcinoma 0 28 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/STAD.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Stomach adenocarcinoma\ parent gdcCancer off\ priority 28\ shortLabel STAD\ track STAD\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ Twist_Exome_Target Twist Core T bigBed Twist - Bioscience - Core Exome Panel Target Regions 1 28 254 97 0 254 176 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/Twist_Exome_Target_hg38.bb\ color 254,97,0\ longLabel Twist - Bioscience - Core Exome Panel Target Regions\ parent exomeProbesets off\ shortLabel Twist Core T\ track Twist_Exome_Target\ type bigBed\ visibility dense\ chainMicMur2 Mouse lemur Chain chain micMur2 Mouse lemur (May 2015 (Mouse lemur/micMur2)) Chained Alignments 3 29 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Mouse lemur (May 2015 (Mouse lemur/micMur2)) Chained Alignments\ otherDb micMur2\ parent primateChainNetViewchain off\ shortLabel Mouse lemur Chain\ subGroups view=chain species=s043 clade=c03\ track chainMicMur2\ type chain micMur2\ chainManPen1 Chinese pangolin Chain chain manPen1 Chinese pangolin (Aug 2014 (M_pentadactyla-1.1.1/manPen1)) Chained Alignments 3 29 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Chinese pangolin (Aug 2014 (M_pentadactyla-1.1.1/manPen1)) Chained Alignments\ otherDb manPen1\ parent placentalChainNetViewchain off\ shortLabel Chinese pangolin Chain\ subGroups view=chain species=s092 clade=c04\ track chainManPen1\ type chain manPen1\ encTfChipPkENCFF714KXI A549 NR3C1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF714KXI) 0 29 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF714KXI)\ parent encTfChipPk off\ shortLabel A549 NR3C1 1\ subGroups cellType=A549 factor=NR3C1\ track encTfChipPkENCFF714KXI\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep2LK17_CNhs13363_tpm_fwd AorticSmsToFgf2_02hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep2 (LK17)_CNhs13363_12745-135I9_forward 1 29 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12745-135I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep2%20%28LK17%29.CNhs13363.12745-135I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep2 (LK17)_CNhs13363_12745-135I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12745-135I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_02hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep2LK17_CNhs13363_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12745-135I9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep2LK17_CNhs13363_ctss_fwd AorticSmsToFgf2_02hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep2 (LK17)_CNhs13363_12745-135I9_forward 0 29 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12745-135I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep2%20%28LK17%29.CNhs13363.12745-135I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep2 (LK17)_CNhs13363_12745-135I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12745-135I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_02hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep2LK17_CNhs13363_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12745-135I9\ urlLabel FANTOM5 Details:\ gtexCovEsophagusMucosa Esoph Mucosa bigWig Esophagus Mucosa 0 29 139 115 85 197 185 170 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-11NSD-1126-SM-5N9BQ.Esophagus_Mucosa.RNAseq.bw\ color 139,115,85\ longLabel Esophagus Mucosa\ parent gtexCov\ shortLabel Esoph Mucosa\ track gtexCovEsophagusMucosa\ wgEncodeRegDnaseUwHconfPeak HConF Pk narrowPeak HConF conjunctival fibroblast DNaseI Peaks from ENCODE 1 29 255 252 85 255 253 170 1 0 0 regulation 1 color 255,252,85\ longLabel HConF conjunctival fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HConF Pk\ subGroups view=a_Peaks cellType=HConF treatment=n_a tissue=eye cancer=unknown\ track wgEncodeRegDnaseUwHconfPeak\ wgEncodeRegDnaseUwHconfWig HConF Sg bigWig 0 8320.98 HConF conjunctival fibroblast DNaseI Signal from ENCODE 0 29 255 252 85 255 253 170 0 0 0 regulation 1 color 255,252,85\ longLabel HConF conjunctival fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.2193\ shortLabel HConF Sg\ subGroups cellType=HConF treatment=n_a tissue=eye cancer=unknown\ table wgEncodeRegDnaseUwHconfSignal\ track wgEncodeRegDnaseUwHconfWig\ type bigWig 0 8320.98\ chainHprcGCA_018504635v1 NA20129.mat chain GCA_018504635.1 NA20129.mat NA20129.pri.mat.f1_v2 (May 2021 GCA_018504635.1_NA20129.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 29 0 0 0 255 255 0 1 0 0 hprc 1 longLabel NA20129.mat NA20129.pri.mat.f1_v2 (May 2021 GCA_018504635.1_NA20129.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504635.1\ parent hprcChainNetViewchain off\ priority 42\ shortLabel NA20129.mat\ subGroups view=chain sample=s042 population=afr subpop=asw hap=mat\ track chainHprcGCA_018504635v1\ type chain GCA_018504635.1\ TGCT TGCT bigLolly 12 + Testicular Germ Cell Tumors 0 29 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/TGCT.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Testicular Germ Cell Tumors\ parent gdcCancer off\ priority 29\ shortLabel TGCT\ track TGCT\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ Twist_Exome_Target2 Twist Exome 2.0 bigBed Twist - Exome 2.0 Panel Target Regions 1 29 254 97 0 254 176 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/TwistExome21.bb\ color 254,97,0\ longLabel Twist - Exome 2.0 Panel Target Regions\ parent exomeProbesets on\ shortLabel Twist Exome 2.0\ track Twist_Exome_Target2\ type bigBed\ visibility dense\ netMicMur2 Mouse lemur Net netAlign micMur2 chainMicMur2 Mouse lemur (May 2015 (Mouse lemur/micMur2)) Alignment Net 1 30 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Mouse lemur (May 2015 (Mouse lemur/micMur2)) Alignment Net\ otherDb micMur2\ parent primateChainNetViewnet off\ shortLabel Mouse lemur Net\ subGroups view=net species=s043 clade=c03\ track netMicMur2\ type netAlign micMur2 chainMicMur2\ netManPen1 Chinese pangolin Net netAlign manPen1 chainManPen1 Chinese pangolin (Aug 2014 (M_pentadactyla-1.1.1/manPen1)) Alignment Net 1 30 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Chinese pangolin (Aug 2014 (M_pentadactyla-1.1.1/manPen1)) Alignment Net\ otherDb manPen1\ parent placentalChainNetViewnet off\ shortLabel Chinese pangolin Net\ subGroups view=net species=s092 clade=c04\ track netManPen1\ type netAlign manPen1 chainManPen1\ encTfChipPkENCFF514IGC A549 NR3C1 2 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF514IGC) 0 30 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF514IGC)\ parent encTfChipPk off\ shortLabel A549 NR3C1 2\ subGroups cellType=A549 factor=NR3C1\ track encTfChipPkENCFF514IGC\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep2LK17_CNhs13363_tpm_rev AorticSmsToFgf2_02hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep2 (LK17)_CNhs13363_12745-135I9_reverse 1 30 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12745-135I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep2%20%28LK17%29.CNhs13363.12745-135I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep2 (LK17)_CNhs13363_12745-135I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12745-135I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_02hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep2LK17_CNhs13363_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12745-135I9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep2LK17_CNhs13363_ctss_rev AorticSmsToFgf2_02hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep2 (LK17)_CNhs13363_12745-135I9_reverse 0 30 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12745-135I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep2%20%28LK17%29.CNhs13363.12745-135I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep2 (LK17)_CNhs13363_12745-135I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12745-135I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_02hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep2LK17_CNhs13363_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12745-135I9\ urlLabel FANTOM5 Details:\ gtexCovEsophagusMuscularis Esoph Muscularis bigWig Esophagus Muscularis 0 30 205 170 125 230 212 190 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1C475-0726-SM-73KVL.Esophagus_Muscularis.RNAseq.bw\ color 205,170,125\ longLabel Esophagus Muscularis\ parent gtexCov\ shortLabel Esoph Muscularis\ track gtexCovEsophagusMuscularis\ wgEncodeRegDnaseUwHacPeak HAc Pk narrowPeak HAc cerebellar astrocyte DNaseI Peaks from ENCODE 1 30 250 255 85 252 255 170 1 0 0 regulation 1 color 250,255,85\ longLabel HAc cerebellar astrocyte DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HAc Pk\ subGroups view=a_Peaks cellType=HAc treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwHacPeak\ wgEncodeRegDnaseUwHacWig HAc Sg bigWig 0 10000.7 HAc cerebellar astrocyte DNaseI Signal from ENCODE 0 30 250 255 85 252 255 170 0 0 0 regulation 1 color 250,255,85\ longLabel HAc cerebellar astrocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.22962\ shortLabel HAc Sg\ subGroups cellType=HAc treatment=n_a tissue=brain cancer=normal\ table wgEncodeRegDnaseUwHacSignal\ track wgEncodeRegDnaseUwHacWig\ type bigWig 0 10000.7\ netHprcGCA_018504635v1 NA20129.mat netAlign GCA_018504635.1 chainHprcGCA_018504635v1 NA20129.mat NA20129.pri.mat.f1_v2 (May 2021 GCA_018504635.1_NA20129.pri.mat.f1_v2) HPRC project computed Chain Nets 1 30 0 0 0 255 255 0 0 0 0 hprc 0 longLabel NA20129.mat NA20129.pri.mat.f1_v2 (May 2021 GCA_018504635.1_NA20129.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504635.1\ parent hprcChainNetViewnet off\ priority 42\ shortLabel NA20129.mat\ subGroups view=net sample=s042 population=afr subpop=asw hap=mat\ track netHprcGCA_018504635v1\ type netAlign GCA_018504635.1 chainHprcGCA_018504635v1\ THCA THCA bigLolly 12 + Thyroid carcinoma 0 30 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/THCA.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Thyroid carcinoma\ parent gdcCancer off\ priority 30\ shortLabel THCA\ track THCA\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ Twist_Exome_RefSeq_Targets Twist RefSeq T bigBed Twist - RefSeq Exome Panel Target Regions 1 30 254 97 0 254 176 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/Twist_Exome_RefSeq_targets_hg38.bb\ color 254,97,0\ longLabel Twist - RefSeq Exome Panel Target Regions\ parent exomeProbesets off\ shortLabel Twist RefSeq T\ track Twist_Exome_RefSeq_Targets\ type bigBed\ visibility dense\ chainOtoGar3 Bushbaby Chain chain otoGar3 Bushbaby (Mar. 2011 (Broad/otoGar3)) Chained Alignments 3 31 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Bushbaby (Mar. 2011 (Broad/otoGar3)) Chained Alignments\ otherDb otoGar3\ parent primateChainNetViewchain off\ shortLabel Bushbaby Chain\ subGroups view=chain species=s045 clade=c03\ track chainOtoGar3\ type chain otoGar3\ chainEquCab3 Horse Chain chain equCab3 Horse (Jan. 2018 (EquCab3.0/equCab3)) Chained Alignments 3 31 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Horse (Jan. 2018 (EquCab3.0/equCab3)) Chained Alignments\ otherDb equCab3\ parent placentalChainNetViewchain off\ shortLabel Horse Chain\ subGroups view=chain species=s096a clade=c05\ track chainEquCab3\ type chain equCab3\ encTfChipPkENCFF963CGV A549 NR3C1 3 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF963CGV) 0 31 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF963CGV)\ parent encTfChipPk off\ shortLabel A549 NR3C1 3\ subGroups cellType=A549 factor=NR3C1\ track encTfChipPkENCFF963CGV\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep3LK18_CNhs13572_tpm_fwd AorticSmsToFgf2_02hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep3 (LK18)_CNhs13572_12843-137B8_forward 1 31 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12843-137B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep3%20%28LK18%29.CNhs13572.12843-137B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep3 (LK18)_CNhs13572_12843-137B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12843-137B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_02hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep3LK18_CNhs13572_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12843-137B8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep3LK18_CNhs13572_ctss_fwd AorticSmsToFgf2_02hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep3 (LK18)_CNhs13572_12843-137B8_forward 0 31 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12843-137B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep3%20%28LK18%29.CNhs13572.12843-137B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep3 (LK18)_CNhs13572_12843-137B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12843-137B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_02hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep3LK18_CNhs13572_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12843-137B8\ urlLabel FANTOM5 Details:\ gtexCovFallopianTube Fallopian Tube bigWig Fallopian Tube 0 31 238 213 210 246 234 232 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-OHPK-2326-SM-3MJH2.Fallopian_Tube.RNAseq.bw\ color 238,213,210\ longLabel Fallopian Tube\ parent gtexCov\ shortLabel Fallopian Tube\ track gtexCovFallopianTube\ wgEncodeRegDnaseUwHvmfPeak HVMF Pk narrowPeak HVMF villous mesenchymal fibroblast DNaseI Peaks from ENCODE 1 31 242 255 85 248 255 170 1 0 0 regulation 1 color 242,255,85\ longLabel HVMF villous mesenchymal fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HVMF Pk\ subGroups view=a_Peaks cellType=HVMF treatment=n_a tissue=placenta cancer=normal\ track wgEncodeRegDnaseUwHvmfPeak\ wgEncodeRegDnaseUwHvmfWig HVMF Sg bigWig 0 5956.46 HVMF villous mesenchymal fibroblast DNaseI Signal from ENCODE 0 31 242 255 85 248 255 170 0 0 0 regulation 1 color 242,255,85\ longLabel HVMF villous mesenchymal fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.24127\ shortLabel HVMF Sg\ subGroups cellType=HVMF treatment=n_a tissue=placenta cancer=normal\ table wgEncodeRegDnaseUwHvmfSignal\ track wgEncodeRegDnaseUwHvmfWig\ type bigWig 0 5956.46\ chainHprcGCA_018504625v1 NA20129.pat chain GCA_018504625.1 NA20129.pat NA20129.alt.pat.f1_v2 (May 2021 GCA_018504625.1_NA20129.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 31 0 0 0 255 255 0 1 0 0 hprc 1 longLabel NA20129.pat NA20129.alt.pat.f1_v2 (May 2021 GCA_018504625.1_NA20129.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504625.1\ parent hprcChainNetViewchain off\ priority 41\ shortLabel NA20129.pat\ subGroups view=chain sample=s041 population=afr subpop=asw hap=pat\ track chainHprcGCA_018504625v1\ type chain GCA_018504625.1\ THYM THYM bigLolly 12 + Thymoma 0 31 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/THYM.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Thymoma\ parent gdcCancer off\ priority 31\ shortLabel THYM\ track THYM\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ netOtoGar3 Bushbaby Net netAlign otoGar3 chainOtoGar3 Bushbaby (Mar. 2011 (Broad/otoGar3)) Alignment Net 1 32 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Bushbaby (Mar. 2011 (Broad/otoGar3)) Alignment Net\ otherDb otoGar3\ parent primateChainNetViewnet on\ shortLabel Bushbaby Net\ subGroups view=net species=s045 clade=c03\ track netOtoGar3\ type netAlign otoGar3 chainOtoGar3\ netEquCab3 Horse Net netAlign equCab3 chainEquCab3 Horse (Jan. 2018 (EquCab3.0/equCab3)) Alignment Net 1 32 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Horse (Jan. 2018 (EquCab3.0/equCab3)) Alignment Net\ otherDb equCab3\ parent placentalChainNetViewnet off\ shortLabel Horse Net\ subGroups view=net species=s096a clade=c05\ track netEquCab3\ type netAlign equCab3 chainEquCab3\ encTfChipPkENCFF114SRD A549 NR3C1 4 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF114SRD) 0 32 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF114SRD)\ parent encTfChipPk off\ shortLabel A549 NR3C1 4\ subGroups cellType=A549 factor=NR3C1\ track encTfChipPkENCFF114SRD\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep3LK18_CNhs13572_tpm_rev AorticSmsToFgf2_02hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep3 (LK18)_CNhs13572_12843-137B8_reverse 1 32 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12843-137B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep3%20%28LK18%29.CNhs13572.12843-137B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep3 (LK18)_CNhs13572_12843-137B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12843-137B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_02hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep3LK18_CNhs13572_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12843-137B8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep3LK18_CNhs13572_ctss_rev AorticSmsToFgf2_02hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep3 (LK18)_CNhs13572_12843-137B8_reverse 0 32 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12843-137B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep3%20%28LK18%29.CNhs13572.12843-137B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep3 (LK18)_CNhs13572_12843-137B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12843-137B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_02hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep3LK18_CNhs13572_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12843-137B8\ urlLabel FANTOM5 Details:\ gtexCovHeartAtrialAppendage Heart Atr Append bigWig Heart Atrial Appendage 0 32 180 82 205 217 168 230 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-13S86-0326-SM-5SI6K.Heart_Atrial_Appendage.RNAseq.bw\ color 180,82,205\ longLabel Heart Atrial Appendage\ parent gtexCov\ shortLabel Heart Atr Append\ track gtexCovHeartAtrialAppendage\ wgEncodeRegDnaseUwHipepicPeak HIPEpiC Pk narrowPeak HIPEpiC iris pigment epithelium DNaseI Peaks from ENCODE 1 32 236 255 85 245 255 170 1 0 0 regulation 1 color 236,255,85\ longLabel HIPEpiC iris pigment epithelium DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HIPEpiC Pk\ subGroups view=a_Peaks cellType=HIPEpiC treatment=n_a tissue=eye cancer=normal\ track wgEncodeRegDnaseUwHipepicPeak\ wgEncodeRegDnaseUwHipepicWig HIPEpiC Sg bigWig 0 8028.81 HIPEpiC iris pigment epithelium DNaseI Signal from ENCODE 0 32 236 255 85 245 255 170 0 0 0 regulation 1 color 236,255,85\ longLabel HIPEpiC iris pigment epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.2515\ shortLabel HIPEpiC Sg\ subGroups cellType=HIPEpiC treatment=n_a tissue=eye cancer=normal\ table wgEncodeRegDnaseUwHipepicSignal\ track wgEncodeRegDnaseUwHipepicWig\ type bigWig 0 8028.81\ netHprcGCA_018504625v1 NA20129.pat netAlign GCA_018504625.1 chainHprcGCA_018504625v1 NA20129.pat NA20129.alt.pat.f1_v2 (May 2021 GCA_018504625.1_NA20129.alt.pat.f1_v2) HPRC project computed Chain Nets 1 32 0 0 0 255 255 0 0 0 0 hprc 0 longLabel NA20129.pat NA20129.alt.pat.f1_v2 (May 2021 GCA_018504625.1_NA20129.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504625.1\ parent hprcChainNetViewnet off\ priority 41\ shortLabel NA20129.pat\ subGroups view=net sample=s041 population=afr subpop=asw hap=pat\ track netHprcGCA_018504625v1\ type netAlign GCA_018504625.1 chainHprcGCA_018504625v1\ UCEC UCEC bigLolly 12 + Uterine Corpus Endometrial Carcinoma 0 32 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/UCEC.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Uterine Corpus Endometrial Carcinoma\ parent gdcCancer off\ priority 32\ shortLabel UCEC\ track UCEC\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ chainDasNov3 Armadillo Chain chain dasNov3 Armadillo (Dec. 2011 (Baylor/dasNov3)) Chained Alignments 3 33 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Armadillo (Dec. 2011 (Baylor/dasNov3)) Chained Alignments\ otherDb dasNov3\ parent placentalChainNetViewchain off\ shortLabel Armadillo Chain\ subGroups view=chain species=s100 clade=c06\ track chainDasNov3\ type chain dasNov3\ encTfChipPkENCFF463DJO A549 NR3C1 5 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF463DJO) 0 33 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF463DJO)\ parent encTfChipPk off\ shortLabel A549 NR3C1 5\ subGroups cellType=A549 factor=NR3C1\ track encTfChipPkENCFF463DJO\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep1LK19_CNhs13345_tpm_fwd AorticSmsToFgf2_03hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep1 (LK19)_CNhs13345_12648-134H2_forward 1 33 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12648-134H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep1%20%28LK19%29.CNhs13345.12648-134H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep1 (LK19)_CNhs13345_12648-134H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12648-134H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_03hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep1LK19_CNhs13345_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12648-134H2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep1LK19_CNhs13345_ctss_fwd AorticSmsToFgf2_03hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep1 (LK19)_CNhs13345_12648-134H2_forward 0 33 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12648-134H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep1%20%28LK19%29.CNhs13345.12648-134H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep1 (LK19)_CNhs13345_12648-134H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12648-134H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_03hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep1LK19_CNhs13345_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12648-134H2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwBonemarrowmscPeak bonemarrow_MSC Pk narrowPeak bone_marrow_MSC bone marrow fibroblastoid DNaseI Peaks from ENCODE 1 33 228 255 85 241 255 170 1 0 0 regulation 1 color 228,255,85\ longLabel bone_marrow_MSC bone marrow fibroblastoid DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel bonemarrow_MSC Pk\ subGroups view=a_Peaks cellType=bone_marrow_MSC treatment=n_a tissue=bone_marrow cancer=normal\ track wgEncodeRegDnaseUwBonemarrowmscPeak\ wgEncodeRegDnaseUwBonemarrowmscWig bonemarrow_MSC Sg bigWig 0 3047.47 bone_marrow_MSC bone marrow fibroblastoid DNaseI Signal from ENCODE 0 33 228 255 85 241 255 170 0 0 0 regulation 1 color 228,255,85\ longLabel bone_marrow_MSC bone marrow fibroblastoid DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.26303\ shortLabel bonemarrow_MSC Sg\ subGroups cellType=bone_marrow_MSC treatment=n_a tissue=bone_marrow cancer=normal\ table wgEncodeRegDnaseUwBonemarrowmscSignal\ track wgEncodeRegDnaseUwBonemarrowmscWig\ type bigWig 0 3047.47\ gtexCovHeartLeftVentricle Heart Left Ventr bigWig Heart Left Ventricle 0 33 122 55 139 188 155 197 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-NFK9-0926-SM-2HMJU.Heart_Left_Ventricle.RNAseq.bw\ color 122,55,139\ longLabel Heart Left Ventricle\ parent gtexCov\ shortLabel Heart Left Ventr\ track gtexCovHeartLeftVentricle\ chainHprcGCA_018471515v1 HG00438.mat chain GCA_018471515.1 HG00438.mat HG00438.pri.mat.f1_v2 (May 2021 GCA_018471515.1_HG00438.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 33 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00438.mat HG00438.pri.mat.f1_v2 (May 2021 GCA_018471515.1_HG00438.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471515.1\ parent hprcChainNetViewchain off\ priority 77\ shortLabel HG00438.mat\ subGroups view=chain sample=s077 population=eas subpop=chs hap=mat\ track chainHprcGCA_018471515v1\ type chain GCA_018471515.1\ UCS UCS bigLolly 12 + Uterine Carcinosarcoma 0 33 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/UCS.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Uterine Carcinosarcoma\ parent gdcCancer off\ priority 33\ shortLabel UCS\ track UCS\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ netDasNov3 Armadillo Net netAlign dasNov3 chainDasNov3 Armadillo (Dec. 2011 (Baylor/dasNov3)) Alignment Net 1 34 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Armadillo (Dec. 2011 (Baylor/dasNov3)) Alignment Net\ otherDb dasNov3\ parent placentalChainNetViewnet off\ shortLabel Armadillo Net\ subGroups view=net species=s100 clade=c06\ track netDasNov3\ type netAlign dasNov3 chainDasNov3\ encTfChipPkENCFF907WHF A549 PHF8 narrowPeak Transcription Factor ChIP-seq Peaks of PHF8 in A549 from ENCODE 3 (ENCFF907WHF) 0 34 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of PHF8 in A549 from ENCODE 3 (ENCFF907WHF)\ parent encTfChipPk off\ shortLabel A549 PHF8\ subGroups cellType=A549 factor=PHF8\ track encTfChipPkENCFF907WHF\ wgEncodeRegDnaseUwAg10803Peak AG10803 Pk narrowPeak AG10803 skin fibroblast DNaseI Peaks from ENCODE 1 34 220 255 85 237 255 170 1 0 0 regulation 1 color 220,255,85\ longLabel AG10803 skin fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel AG10803 Pk\ subGroups view=a_Peaks cellType=AG10803 treatment=n_a tissue=skin cancer=unknown\ track wgEncodeRegDnaseUwAg10803Peak\ wgEncodeRegDnaseUwAg10803Wig AG10803 Sg bigWig 0 19440.9 AG10803 skin fibroblast DNaseI Signal from ENCODE 0 34 220 255 85 237 255 170 0 0 0 regulation 1 color 220,255,85\ longLabel AG10803 skin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.27484\ shortLabel AG10803 Sg\ subGroups cellType=AG10803 treatment=n_a tissue=skin cancer=unknown\ table wgEncodeRegDnaseUwAg10803Signal\ track wgEncodeRegDnaseUwAg10803Wig\ type bigWig 0 19440.9\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep1LK19_CNhs13345_tpm_rev AorticSmsToFgf2_03hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep1 (LK19)_CNhs13345_12648-134H2_reverse 1 34 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12648-134H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep1%20%28LK19%29.CNhs13345.12648-134H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep1 (LK19)_CNhs13345_12648-134H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12648-134H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_03hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep1LK19_CNhs13345_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12648-134H2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep1LK19_CNhs13345_ctss_rev AorticSmsToFgf2_03hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep1 (LK19)_CNhs13345_12648-134H2_reverse 0 34 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12648-134H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep1%20%28LK19%29.CNhs13345.12648-134H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep1 (LK19)_CNhs13345_12648-134H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12648-134H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_03hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep1LK19_CNhs13345_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12648-134H2\ urlLabel FANTOM5 Details:\ netHprcGCA_018471515v1 HG00438.mat netAlign GCA_018471515.1 chainHprcGCA_018471515v1 HG00438.mat HG00438.pri.mat.f1_v2 (May 2021 GCA_018471515.1_HG00438.pri.mat.f1_v2) HPRC project computed Chain Nets 1 34 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00438.mat HG00438.pri.mat.f1_v2 (May 2021 GCA_018471515.1_HG00438.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471515.1\ parent hprcChainNetViewnet off\ priority 77\ shortLabel HG00438.mat\ subGroups view=net sample=s077 population=eas subpop=chs hap=mat\ track netHprcGCA_018471515v1\ type netAlign GCA_018471515.1 chainHprcGCA_018471515v1\ gtexCovKidneyCortex Kidney Cortex bigWig Kidney Cortex 0 34 205 183 158 230 219 206 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-13OVI-1126-SM-5KLZF.Kidney_Cortex.RNAseq.bw\ color 205,183,158\ longLabel Kidney Cortex\ parent gtexCov\ shortLabel Kidney Cortex\ track gtexCovKidneyCortex\ UVM UVM bigLolly 12 + Uveal Melanoma 0 34 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/UVM.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Uveal Melanoma\ parent gdcCancer off\ priority 34\ shortLabel UVM\ track UVM\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ wgEncodeGencodeV45 All GENCODE V45 genePred All GENCODE annotations from V45 (Ensembl 111) 3 34.16 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 45, Jan 2024) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 45 annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \

    GENCODE GFF3 and GTF files are available from the\ GENCODE release 45 site.

    \ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 45 corresponds to Ensembl 111.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

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tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA 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supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV45 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV45\ longLabel All GENCODE annotations from V45 (Ensembl 111)\ parent wgEncodeGencodeV45\ shortLabel Genes\ track wgEncodeGencodeV45ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV45ViewPolya PolyA genePred All GENCODE annotations from V45 (Ensembl 111) 0 34.16 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V45 (Ensembl 111)\ parent wgEncodeGencodeV45\ shortLabel PolyA\ track wgEncodeGencodeV45ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV44 All GENCODE V44 genePred All GENCODE annotations from V44 (Ensembl 110) 0 34.161 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 44, July 2023) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 44 annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \

    GENCODE GFF3 and GTF files are available from the\ GENCODE release 44 site.

    \ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 44 corresponds to Ensembl 110.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V44 (Ensembl 110)\ maxTransEnabled on\ priority 34.161\ shortLabel All GENCODE V44\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes bPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper pack\ track wgEncodeGencodeV44\ type genePred\ visibility hide\ wgEncodeGencodeVersion 44\ wgEncodeGencodeV44ViewGenes Genes genePred All GENCODE annotations from V44 (Ensembl 110) 3 34.161 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV44 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV44\ longLabel All GENCODE annotations from V44 (Ensembl 110)\ parent wgEncodeGencodeV44\ shortLabel Genes\ track wgEncodeGencodeV44ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV44ViewPolya PolyA genePred All GENCODE annotations from V44 (Ensembl 110) 0 34.161 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V44 (Ensembl 110)\ parent wgEncodeGencodeV44\ shortLabel PolyA\ track wgEncodeGencodeV44ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV43 All GENCODE V43 genePred All GENCODE annotations from V43 (Ensembl 109) 0 34.162 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 43, Feb 2023) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 43 annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \

    GENCODE GFF3 and GTF files are available from the\ GENCODE release 43 site.

    \ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 43 corresponds to Ensembl 109.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V43 (Ensembl 109)\ maxTransEnabled on\ priority 34.162\ shortLabel All GENCODE V43\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes bPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper pack\ track wgEncodeGencodeV43\ type genePred\ visibility hide\ wgEncodeGencodeVersion 43\ wgEncodeGencodeV43ViewGenes Genes genePred All GENCODE annotations from V43 (Ensembl 109) 3 34.162 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV43 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV43\ longLabel All GENCODE annotations from V43 (Ensembl 109)\ parent wgEncodeGencodeV43\ shortLabel Genes\ track wgEncodeGencodeV43ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV43ViewPolya PolyA genePred All GENCODE annotations from V43 (Ensembl 109) 0 34.162 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V43 (Ensembl 109)\ parent wgEncodeGencodeV43\ shortLabel PolyA\ track wgEncodeGencodeV43ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV42 All GENCODE V42 genePred All GENCODE annotations from V42 (Ensembl 108) 0 34.163 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 42, Oct 2022) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 42 annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \

    GENCODE GFF3 and GTF files are available from the\ GENCODE release 42 site.

    \ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 42 corresponds to Ensembl 108.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V42 (Ensembl 108)\ maxTransEnabled on\ priority 34.163\ shortLabel All GENCODE V42\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes bPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper pack\ track wgEncodeGencodeV42\ type genePred\ visibility hide\ wgEncodeGencodeVersion 42\ wgEncodeGencodeV42ViewGenes Genes genePred All GENCODE annotations from V42 (Ensembl 108) 3 34.163 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV42 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV42\ longLabel All GENCODE annotations from V42 (Ensembl 108)\ parent wgEncodeGencodeV42\ shortLabel Genes\ track wgEncodeGencodeV42ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV42ViewPolya PolyA genePred All GENCODE annotations from V42 (Ensembl 108) 0 34.163 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V42 (Ensembl 108)\ parent wgEncodeGencodeV42\ shortLabel PolyA\ track wgEncodeGencodeV42ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV41View2Way 2-Way genePred All GENCODE annotations from V41 (Ensembl 107) 0 34.164 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V41 (Ensembl 107)\ parent wgEncodeGencodeV41\ shortLabel 2-Way\ track wgEncodeGencodeV41View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV41 All GENCODE V41 genePred All GENCODE annotations from V41 (Ensembl 107) 0 34.164 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 41, July 2022) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 41 annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \

    GENCODE GFF3 and GTF files are available from the\ GENCODE release 41 site.

    \ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 41 corresponds to Ensembl 107.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V41 (Ensembl 107)\ priority 34.164\ shortLabel All GENCODE V41\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper pack\ track wgEncodeGencodeV41\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV41\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV41\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV41\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV41\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV41\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV41\ wgEncodeGencodePdb wgEncodeGencodePdbV41\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV41\ wgEncodeGencodePubMed wgEncodeGencodePubMedV41\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV41\ wgEncodeGencodeTag wgEncodeGencodeTagV41\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV41\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV41\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV41\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV41\ wgEncodeGencodeVersion 41\ wgEncodeGencodeV41ViewGenes Genes genePred All GENCODE annotations from V41 (Ensembl 107) 3 34.164 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV41 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV41\ longLabel All GENCODE annotations from V41 (Ensembl 107)\ parent wgEncodeGencodeV41\ shortLabel Genes\ track wgEncodeGencodeV41ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV41ViewPolya PolyA genePred All GENCODE annotations from V41 (Ensembl 107) 0 34.164 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V41 (Ensembl 107)\ parent wgEncodeGencodeV41\ shortLabel PolyA\ track wgEncodeGencodeV41ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV40View2Way 2-Way genePred All GENCODE annotations from V40 (Ensembl 106) 0 34.165 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V40 (Ensembl 106)\ parent wgEncodeGencodeV40\ shortLabel 2-Way\ track wgEncodeGencodeV40View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV40 All GENCODE V40 genePred All GENCODE annotations from V40 (Ensembl 106) 0 34.165 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 40, Feb 2022) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 40 annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \

    GENCODE GFF3 and GTF files are available from the\ GENCODE release 40 site.

    \ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 40 corresponds to Ensembl 106.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V40 (Ensembl 106)\ priority 34.165\ shortLabel All GENCODE V40\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV40\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV40\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV40\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV40\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV40\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV40\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV40\ wgEncodeGencodePdb wgEncodeGencodePdbV40\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV40\ wgEncodeGencodePubMed wgEncodeGencodePubMedV40\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV40\ wgEncodeGencodeTag wgEncodeGencodeTagV40\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV40\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV40\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV40\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV40\ wgEncodeGencodeVersion 40\ wgEncodeGencodeV40ViewGenes Genes genePred All GENCODE annotations from V40 (Ensembl 106) 3 34.165 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV40 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV40\ longLabel All GENCODE annotations from V40 (Ensembl 106)\ parent wgEncodeGencodeV40\ shortLabel Genes\ track wgEncodeGencodeV40ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV40ViewPolya PolyA genePred All GENCODE annotations from V40 (Ensembl 106) 0 34.165 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V40 (Ensembl 106)\ parent wgEncodeGencodeV40\ shortLabel PolyA\ track wgEncodeGencodeV40ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV39View2Way 2-Way genePred All GENCODE annotations from V39 (Ensembl 105) 0 34.166 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V39 (Ensembl 105)\ parent wgEncodeGencodeV39\ shortLabel 2-Way\ track wgEncodeGencodeV39View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV39 All GENCODE V39 genePred All GENCODE annotations from V39 (Ensembl 105) 0 34.166 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 39, Oct 2021) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 39 annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \

    GENCODE GFF3 and GTF files are available from the\ GENCODE release 39 site.

    \ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 39 corresponds to Ensembl 105.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V39 (Ensembl 105)\ priority 34.166\ shortLabel All GENCODE V39\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV39\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV39\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV39\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV39\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV39\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV39\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV39\ wgEncodeGencodePdb wgEncodeGencodePdbV39\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV39\ wgEncodeGencodePubMed wgEncodeGencodePubMedV39\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV39\ wgEncodeGencodeTag wgEncodeGencodeTagV39\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV39\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV39\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV39\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV39\ wgEncodeGencodeVersion 39\ wgEncodeGencodeV39ViewGenes Genes genePred All GENCODE annotations from V39 (Ensembl 105) 3 34.166 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV39 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV39\ longLabel All GENCODE annotations from V39 (Ensembl 105)\ parent wgEncodeGencodeV39\ shortLabel Genes\ track wgEncodeGencodeV39ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV39ViewPolya PolyA genePred All GENCODE annotations from V39 (Ensembl 105) 0 34.166 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V39 (Ensembl 105)\ parent wgEncodeGencodeV39\ shortLabel PolyA\ track wgEncodeGencodeV39ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV38View2Way 2-Way genePred All GENCODE annotations from V38 (Ensembl 104) 0 34.167 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V38 (Ensembl 104)\ parent wgEncodeGencodeV38\ shortLabel 2-Way\ track wgEncodeGencodeV38View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV38 All GENCODE V38 genePred All GENCODE annotations from V38 (Ensembl 104) 0 34.167 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 38, May 2021) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 38 annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \

    GENCODE GFF3 and GTF files are available from the\ GENCODE release 38 site.

    \ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 38 corresponds to Ensembl 104.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V38 (Ensembl 104)\ priority 34.167\ shortLabel All GENCODE V38\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV38\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV38\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV38\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV38\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV38\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV38\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV38\ wgEncodeGencodePdb wgEncodeGencodePdbV38\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV38\ wgEncodeGencodePubMed wgEncodeGencodePubMedV38\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV38\ wgEncodeGencodeTag wgEncodeGencodeTagV38\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV38\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV38\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV38\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV38\ wgEncodeGencodeVersion 38\ wgEncodeGencodeV38ViewGenes Genes genePred All GENCODE annotations from V38 (Ensembl 104) 3 34.167 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV38 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV38\ longLabel All GENCODE annotations from V38 (Ensembl 104)\ parent wgEncodeGencodeV38\ shortLabel Genes\ track wgEncodeGencodeV38ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV38ViewPolya PolyA genePred All GENCODE annotations from V38 (Ensembl 104) 0 34.167 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V38 (Ensembl 104)\ parent wgEncodeGencodeV38\ shortLabel PolyA\ track wgEncodeGencodeV38ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV37View2Way 2-Way genePred All GENCODE annotations from V37 (Ensembl 103) 0 34.168 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V37 (Ensembl 103)\ parent wgEncodeGencodeV37\ shortLabel 2-Way\ track wgEncodeGencodeV37View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV37 All GENCODE V37 genePred All GENCODE annotations from V37 (Ensembl 103) 0 34.168 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 37, Feb 2021) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 37 annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \

    GENCODE GFF3 and GTF files are available from the\ GENCODE release 37 site.

    \ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 37 corresponds to Ensembl 103.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V37 (Ensembl 103)\ priority 34.168\ shortLabel All GENCODE V37\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV37\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV37\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV37\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV37\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV37\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV37\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV37\ wgEncodeGencodePdb wgEncodeGencodePdbV37\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV37\ wgEncodeGencodePubMed wgEncodeGencodePubMedV37\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV37\ wgEncodeGencodeTag wgEncodeGencodeTagV37\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV37\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV37\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV37\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV37\ wgEncodeGencodeVersion 37\ wgEncodeGencodeV37ViewGenes Genes genePred All GENCODE annotations from V37 (Ensembl 103) 3 34.168 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV37 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV37\ longLabel All GENCODE annotations from V37 (Ensembl 103)\ parent wgEncodeGencodeV37\ shortLabel Genes\ track wgEncodeGencodeV37ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV37ViewPolya PolyA genePred All GENCODE annotations from V37 (Ensembl 103) 0 34.168 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V37 (Ensembl 103)\ parent wgEncodeGencodeV37\ shortLabel PolyA\ track wgEncodeGencodeV37ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV36View2Way 2-Way genePred All GENCODE annotations from V36 (Ensembl 102) 0 34.169 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V36 (Ensembl 102)\ parent wgEncodeGencodeV36\ shortLabel 2-Way\ track wgEncodeGencodeV36View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV36 All GENCODE V36 genePred All GENCODE annotations from V36 (Ensembl 102) 0 34.169 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 36, Nov 2020) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 36 annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \

    GENCODE GFF3 and GTF files are available from the\ GENCODE release 36 site.

    \ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 36 corresponds to Ensembl 102.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V36 (Ensembl 102)\ priority 34.169\ shortLabel All GENCODE V36\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV36\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV36\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV36\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV36\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV36\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV36\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV36\ wgEncodeGencodePdb wgEncodeGencodePdbV36\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV36\ wgEncodeGencodePubMed wgEncodeGencodePubMedV36\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV36\ wgEncodeGencodeTag wgEncodeGencodeTagV36\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV36\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV36\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV36\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV36\ wgEncodeGencodeVersion 36\ wgEncodeGencodeV36ViewGenes Genes genePred All GENCODE annotations from V36 (Ensembl 102) 3 34.169 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV36 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV36\ longLabel All GENCODE annotations from V36 (Ensembl 102)\ parent wgEncodeGencodeV36\ shortLabel Genes\ track wgEncodeGencodeV36ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV36ViewPolya PolyA genePred All GENCODE annotations from V36 (Ensembl 102) 0 34.169 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V36 (Ensembl 102)\ parent wgEncodeGencodeV36\ shortLabel PolyA\ track wgEncodeGencodeV36ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV35View2Way 2-Way genePred All GENCODE annotations from V35 (Ensembl 101) 0 34.17 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V35 (Ensembl 101)\ parent wgEncodeGencodeV35\ shortLabel 2-Way\ track wgEncodeGencodeV35View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV35 All GENCODE V35 genePred All GENCODE annotations from V35 (Ensembl 101) 0 34.17 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 35, Aug 2020) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 35 annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \

    GENCODE GFF3 and GTF files are available from the\ GENCODE release 35 site.

    \ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 35 corresponds to Ensembl 101.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V35 (Ensembl 101)\ priority 34.170\ shortLabel All GENCODE V35\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV35\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV35\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV35\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV35\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV35\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV35\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV35\ wgEncodeGencodePdb wgEncodeGencodePdbV35\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV35\ wgEncodeGencodePubMed wgEncodeGencodePubMedV35\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV35\ wgEncodeGencodeTag wgEncodeGencodeTagV35\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV35\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV35\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV35\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV35\ wgEncodeGencodeVersion 35\ wgEncodeGencodeV35ViewGenes Genes genePred All GENCODE annotations from V35 (Ensembl 101) 3 34.17 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV35 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV35\ longLabel All GENCODE annotations from V35 (Ensembl 101)\ parent wgEncodeGencodeV35\ shortLabel Genes\ track wgEncodeGencodeV35ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV35ViewPolya PolyA genePred All GENCODE annotations from V35 (Ensembl 101) 0 34.17 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V35 (Ensembl 101)\ parent wgEncodeGencodeV35\ shortLabel PolyA\ track wgEncodeGencodeV35ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV34View2Way 2-Way genePred All GENCODE annotations from V34 (Ensembl 100) 0 34.171 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V34 (Ensembl 100)\ parent wgEncodeGencodeV34\ shortLabel 2-Way\ track wgEncodeGencodeV34View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV34 All GENCODE V34 genePred All GENCODE annotations from V34 (Ensembl 100) 0 34.171 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 34, April 2020) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 34 annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \

    GENCODE GFF3 and GTF files are available from the\ GENCODE release 34 site.

    \ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 34 corresponds to Ensembl 100.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V34 (Ensembl 100)\ priority 34.171\ shortLabel All GENCODE V34\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV34\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV34\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV34\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV34\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV34\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV34\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV34\ wgEncodeGencodePdb wgEncodeGencodePdbV34\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV34\ wgEncodeGencodePubMed wgEncodeGencodePubMedV34\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV34\ wgEncodeGencodeTag wgEncodeGencodeTagV34\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV34\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV34\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV34\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV34\ wgEncodeGencodeVersion 34\ wgEncodeGencodeV34ViewGenes Genes genePred All GENCODE annotations from V34 (Ensembl 100) 3 34.171 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV34 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV34\ longLabel All GENCODE annotations from V34 (Ensembl 100)\ parent wgEncodeGencodeV34\ shortLabel Genes\ track wgEncodeGencodeV34ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV34ViewPolya PolyA genePred All GENCODE annotations from V34 (Ensembl 100) 0 34.171 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V34 (Ensembl 100)\ parent wgEncodeGencodeV34\ shortLabel PolyA\ track wgEncodeGencodeV34ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV33View2Way 2-Way genePred All GENCODE annotations from V33 (Ensembl 99) 0 34.172 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V33 (Ensembl 99)\ parent wgEncodeGencodeV33\ shortLabel 2-Way\ track wgEncodeGencodeV33View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV33 All GENCODE V33 genePred All GENCODE annotations from V33 (Ensembl 99) 0 34.172 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 33, Jan 2020) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 33 annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \

    GENCODE GFF3 and GTF files are available from the\ GENCODE release 33 site.

    \ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 33 corresponds to Ensembl 99.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V33 (Ensembl 99)\ priority 34.172\ shortLabel All GENCODE V33\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV33\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV33\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV33\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV33\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV33\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV33\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV33\ wgEncodeGencodePdb wgEncodeGencodePdbV33\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV33\ wgEncodeGencodePubMed wgEncodeGencodePubMedV33\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV33\ wgEncodeGencodeTag wgEncodeGencodeTagV33\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV33\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV33\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV33\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV33\ wgEncodeGencodeVersion 33\ wgEncodeGencodeV33ViewGenes Genes genePred All GENCODE annotations from V33 (Ensembl 99) 3 34.172 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV33 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV33\ longLabel All GENCODE annotations from V33 (Ensembl 99)\ parent wgEncodeGencodeV33\ shortLabel Genes\ track wgEncodeGencodeV33ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV33ViewPolya PolyA genePred All GENCODE annotations from V33 (Ensembl 99) 0 34.172 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V33 (Ensembl 99)\ parent wgEncodeGencodeV33\ shortLabel PolyA\ track wgEncodeGencodeV33ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV32View2Way 2-Way genePred All GENCODE annotations from V32 (Ensembl 98) 0 34.173 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V32 (Ensembl 98)\ parent wgEncodeGencodeV32\ shortLabel 2-Way\ track wgEncodeGencodeV32View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV32 All GENCODE V32 genePred All GENCODE annotations from V32 (Ensembl 98) 0 34.173 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 32, Sept 2019) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 32 annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \

    GENCODE GFF3 and GTF files are available from the\ GENCODE release 32 site.

    \ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 32 corresponds to Ensembl 98.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V32 (Ensembl 98)\ priority 34.173\ shortLabel All GENCODE V32\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV32\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV32\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV32\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV32\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV32\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV32\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV32\ wgEncodeGencodePdb wgEncodeGencodePdbV32\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV32\ wgEncodeGencodePubMed wgEncodeGencodePubMedV32\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV32\ wgEncodeGencodeTag wgEncodeGencodeTagV32\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV32\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV32\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV32\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV32\ wgEncodeGencodeVersion 32\ wgEncodeGencodeV32ViewGenes Genes genePred All GENCODE annotations from V32 (Ensembl 98) 3 34.173 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV32 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV32\ longLabel All GENCODE annotations from V32 (Ensembl 98)\ parent wgEncodeGencodeV32\ shortLabel Genes\ track wgEncodeGencodeV32ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV32ViewPolya PolyA genePred All GENCODE annotations from V32 (Ensembl 98) 0 34.173 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V32 (Ensembl 98)\ parent wgEncodeGencodeV32\ shortLabel PolyA\ track wgEncodeGencodeV32ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV31View2Way 2-Way genePred All GENCODE annotations from V31 (Ensembl 97) 0 34.174 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V31 (Ensembl 97)\ parent wgEncodeGencodeV31\ shortLabel 2-Way\ track wgEncodeGencodeV31View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV31 All GENCODE V31 genePred All GENCODE annotations from V31 (Ensembl 97) 0 34.174 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 31, June 2019) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 31 annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \

    \ GENCODE GFF3 and GTF files are available from the\ GENCODE release 31\ site.

    \ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 31 corresponds to Ensembl 97.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V31 (Ensembl 97)\ priority 34.174\ shortLabel All GENCODE V31\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV31\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV31\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV31\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV31\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV31\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV31\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV31\ wgEncodeGencodePdb wgEncodeGencodePdbV31\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV31\ wgEncodeGencodePubMed wgEncodeGencodePubMedV31\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV31\ wgEncodeGencodeTag wgEncodeGencodeTagV31\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV31\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV31\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV31\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV31\ wgEncodeGencodeVersion 31\ wgEncodeGencodeV31ViewGenes Genes genePred All GENCODE annotations from V31 (Ensembl 97) 3 34.174 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV31 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV31\ longLabel All GENCODE annotations from V31 (Ensembl 97)\ parent wgEncodeGencodeV31\ shortLabel Genes\ track wgEncodeGencodeV31ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV31ViewPolya PolyA genePred All GENCODE annotations from V31 (Ensembl 97) 0 34.174 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V31 (Ensembl 97)\ parent wgEncodeGencodeV31\ shortLabel PolyA\ track wgEncodeGencodeV31ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV30View2Way 2-Way genePred All GENCODE annotations from V30 (Ensembl 96) 0 34.175 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V30 (Ensembl 96)\ parent wgEncodeGencodeV30\ shortLabel 2-Way\ track wgEncodeGencodeV30View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV30 All GENCODE V30 genePred All GENCODE annotations from V30 (Ensembl 96) 0 34.175 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 30, Apr 2019) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 30 annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \ GENCODE GFF3 and GTF files are available from the\ GENCODE release 30 site.\ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 30 corresponds to Ensembl 96.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V30 (Ensembl 96)\ priority 34.175\ shortLabel All GENCODE V30\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV30\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV30\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV30\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV30\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV30\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV30\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV30\ wgEncodeGencodePdb wgEncodeGencodePdbV30\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV30\ wgEncodeGencodePubMed wgEncodeGencodePubMedV30\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV30\ wgEncodeGencodeTag wgEncodeGencodeTagV30\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV30\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV30\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV30\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV30\ wgEncodeGencodeVersion 30\ wgEncodeGencodeV30ViewGenes Genes genePred All GENCODE annotations from V30 (Ensembl 96) 3 34.175 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV30 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV30\ longLabel All GENCODE annotations from V30 (Ensembl 96)\ parent wgEncodeGencodeV30\ shortLabel Genes\ track wgEncodeGencodeV30ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV30ViewPolya PolyA genePred All GENCODE annotations from V30 (Ensembl 96) 0 34.175 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V30 (Ensembl 96)\ parent wgEncodeGencodeV30\ shortLabel PolyA\ track wgEncodeGencodeV30ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV29View2Way 2-Way genePred All GENCODE annotations from V29 (Ensembl 94) 0 34.176 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V29 (Ensembl 94)\ parent wgEncodeGencodeV29\ shortLabel 2-Way\ track wgEncodeGencodeV29View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV29 All GENCODE V29 genePred All GENCODE annotations from V29 (Ensembl 94) 0 34.176 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 29, Oct 2018) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 29 annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \ GENCODE GFF3 and GTF files are available from the\ GENCODE release 29 site.\ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 29 corresponds to Ensembl 94.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V29 (Ensembl 94)\ priority 34.176\ shortLabel All GENCODE V29\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV29\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV29\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV29\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV29\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV29\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV29\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV29\ wgEncodeGencodePdb wgEncodeGencodePdbV29\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV29\ wgEncodeGencodePubMed wgEncodeGencodePubMedV29\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV29\ wgEncodeGencodeTag wgEncodeGencodeTagV29\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV29\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV29\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV29\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV29\ wgEncodeGencodeVersion 29\ wgEncodeGencodeV29ViewGenes Genes genePred All GENCODE annotations from V29 (Ensembl 94) 3 34.176 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,orphan,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,orphan,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV29 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV29\ longLabel All GENCODE annotations from V29 (Ensembl 94)\ parent wgEncodeGencodeV29\ shortLabel Genes\ track wgEncodeGencodeV29ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV29ViewPolya PolyA genePred All GENCODE annotations from V29 (Ensembl 94) 0 34.176 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V29 (Ensembl 94)\ parent wgEncodeGencodeV29\ shortLabel PolyA\ track wgEncodeGencodeV29ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV28View2Way 2-Way genePred All GENCODE annotations from V28 (Ensembl 92) 0 34.177 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V28 (Ensembl 92)\ parent wgEncodeGencodeV28\ shortLabel 2-Way\ track wgEncodeGencodeV28View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV28 All GENCODE V28 genePred All GENCODE annotations from V28 (Ensembl 92) 0 34.177 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 28, Apr 2018) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 28 annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \ GENCODE GFF3 and GTF files are available from the\ GENCODE release 28 site.\ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 28 corresponds to Ensembl 92.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V28 (Ensembl 92)\ priority 34.177\ shortLabel All GENCODE V28\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV28\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV28\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV28\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV28\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV28\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV28\ wgEncodeGencodePdb wgEncodeGencodePdbV28\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV28\ wgEncodeGencodePubMed wgEncodeGencodePubMedV28\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV28\ wgEncodeGencodeTag wgEncodeGencodeTagV28\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV28\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV28\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV28\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV28\ wgEncodeGencodeVersion 28\ wgEncodeGencodeV28ViewGenes Genes genePred All GENCODE annotations from V28 (Ensembl 92) 3 34.177 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,orphan,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,orphan,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV28 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV28\ longLabel All GENCODE annotations from V28 (Ensembl 92)\ parent wgEncodeGencodeV28\ shortLabel Genes\ track wgEncodeGencodeV28ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV28ViewPolya PolyA genePred All GENCODE annotations from V28 (Ensembl 92) 0 34.177 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V28 (Ensembl 92)\ parent wgEncodeGencodeV28\ shortLabel PolyA\ track wgEncodeGencodeV28ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV27View2Way 2-Way genePred All GENCODE annotations from V27 (Ensembl 90) 0 34.178 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V27 (Ensembl 90)\ parent wgEncodeGencodeV27\ shortLabel 2-Way\ track wgEncodeGencodeV27View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV27 All GENCODE V27 genePred All GENCODE annotations from V27 (Ensembl 90) 0 34.178 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 27, Aug 2017) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 27 annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \ GENCODE GFF3 and GTF files are available from the\ GENCODE release 27 site.\ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 27 corresponds to Ensembl 90.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V27 (Ensembl 90)\ priority 34.178\ shortLabel All GENCODE V27\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV27\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV27\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV27\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV27\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV27\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV27\ wgEncodeGencodePdb wgEncodeGencodePdbV27\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV27\ wgEncodeGencodePubMed wgEncodeGencodePubMedV27\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV27\ wgEncodeGencodeTag wgEncodeGencodeTagV27\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV27\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV27\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV27\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV27\ wgEncodeGencodeVersion 27\ wgEncodeGencodeV27ViewGenes Genes genePred All GENCODE annotations from V27 (Ensembl 90) 3 34.178 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense_RNA,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,orphan,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense_RNA,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,orphan,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV27 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV27\ longLabel All GENCODE annotations from V27 (Ensembl 90)\ parent wgEncodeGencodeV27\ shortLabel Genes\ track wgEncodeGencodeV27ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV27ViewPolya PolyA genePred All GENCODE annotations from V27 (Ensembl 90) 0 34.178 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V27 (Ensembl 90)\ parent wgEncodeGencodeV27\ shortLabel PolyA\ track wgEncodeGencodeV27ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV26View2Way 2-Way genePred All GENCODE annotations from V26 (Ensembl 88) 0 34.179 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V26 (Ensembl 88)\ parent wgEncodeGencodeV26\ shortLabel 2-Way\ track wgEncodeGencodeV26View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV26 All GENCODE V26 genePred All GENCODE annotations from V26 (Ensembl 88) 0 34.179 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 26, March 2017) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 26 annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \ GENCODE GFF3 and GTF files are available from the\ GENCODE release 26 site.\ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 26 corresponds to Ensembl 88.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V26 (Ensembl 88)\ priority 34.179\ shortLabel All GENCODE V26\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV26\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV26\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV26\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV26\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV26\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV26\ wgEncodeGencodePdb wgEncodeGencodePdbV26\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV26\ wgEncodeGencodePubMed wgEncodeGencodePubMedV26\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV26\ wgEncodeGencodeTag wgEncodeGencodeTagV26\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV26\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV26\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV26\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV26\ wgEncodeGencodeVersion 26\ wgEncodeGencodeV26ViewGenes Genes genePred All GENCODE annotations from V26 (Ensembl 88) 3 34.179 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,pseudo_consens,readthrough_transcript,retained_intron_CDS,retained_intron_final,retained_intron_first,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_D_pseudogene,IG_J_gene,IG_LV_gene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,pseudo_consens,readthrough_transcript,retained_intron_CDS,retained_intron_final,retained_intron_first,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV26 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV26\ longLabel All GENCODE annotations from V26 (Ensembl 88)\ parent wgEncodeGencodeV26\ shortLabel Genes\ track wgEncodeGencodeV26ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV26ViewPolya PolyA genePred All GENCODE annotations from V26 (Ensembl 88) 0 34.179 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V26 (Ensembl 88)\ parent wgEncodeGencodeV26\ shortLabel PolyA\ track wgEncodeGencodeV26ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV25View2Way 2-Way genePred All GENCODE transcripts including comprehensive set V25 0 34.18 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE transcripts including comprehensive set V25\ parent wgEncodeGencodeV25\ shortLabel 2-Way\ track wgEncodeGencodeV25View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV25 All GENCODE V25 genePred All GENCODE transcripts including comprehensive set V25 0 34.18 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 25, July 2016) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ As of GENCODE Version 11, Ensembl and GENCODE have converged. The gene\ annotations in the GENCODE comprehensive set are the same as the corresponding\ Ensembl release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \ GENCODE GFF3 and GTF files are available from the\ GENCODE release 25 site.\ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \ \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 25 corresponds to Ensembl 85.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE transcripts including comprehensive set V25\ priority 34.180\ shortLabel All GENCODE V25\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV25\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV25\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV25\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV25\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV25\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV25\ wgEncodeGencodePdb wgEncodeGencodePdbV25\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV25\ wgEncodeGencodePubMed wgEncodeGencodePubMedV25\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV25\ wgEncodeGencodeTag wgEncodeGencodeTagV25\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV25\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV25\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV25\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV25\ wgEncodeGencodeVersion 25\ wgEncodeGencodeV25ViewGenes Genes genePred All GENCODE transcripts including comprehensive set V25 3 34.18 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,pseudo_consens,readthrough_transcript,retained_intron_CDS,retained_intron_final,retained_intron_first,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,pseudo_consens,readthrough_transcript,retained_intron_CDS,retained_intron_final,retained_intron_first,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV25 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV25\ longLabel All GENCODE transcripts including comprehensive set V25\ parent wgEncodeGencodeV25\ shortLabel Genes\ track wgEncodeGencodeV25ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV25ViewPolya PolyA genePred All GENCODE transcripts including comprehensive set V25 0 34.18 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE transcripts including comprehensive set V25\ parent wgEncodeGencodeV25\ shortLabel PolyA\ track wgEncodeGencodeV25ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV24View2Way 2-Way genePred All GENCODE transcripts including comprehensive set V24 0 34.181 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE transcripts including comprehensive set V24\ parent wgEncodeGencodeV24\ shortLabel 2-Way\ track wgEncodeGencodeV24View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV24 All GENCODE V24 genePred All GENCODE transcripts including comprehensive set V24 0 34.181 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 24, December 2015) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ As of GENCODE Version 11, Ensembl and GENCODE have converged. The gene\ annotations in the GENCODE comprehensive set are the same as the corresponding\ Ensembl release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \ GENCODE GFF3 and GTF files are available from the\ GENCODE release 24 site.\ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \ \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 24 corresponds to Ensembl 84.

    \ \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE transcripts including comprehensive set V24\ priority 34.181\ shortLabel All GENCODE V24\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV24\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV24\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV24\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV24\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV24\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV24\ wgEncodeGencodePdb wgEncodeGencodePdbV24\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV24\ wgEncodeGencodePubMed wgEncodeGencodePubMedV24\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV24\ wgEncodeGencodeTag wgEncodeGencodeTagV24\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV24\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV24\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV24\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV24\ wgEncodeGencodeVersion 24\ wgEncodeGencodeV24ViewGenes Genes genePred All GENCODE transcripts including comprehensive set V24 3 34.181 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,CCDS,cds_end_NF,cds_start_NF,downstream_ATG,exp_conf,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,CCDS,cds_end_NF,cds_start_NF,downstream_ATG,exp_conf,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV24 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV24\ longLabel All GENCODE transcripts including comprehensive set V24\ parent wgEncodeGencodeV24\ shortLabel Genes\ track wgEncodeGencodeV24ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV24ViewPolya PolyA genePred All GENCODE transcripts including comprehensive set V24 0 34.181 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE transcripts including comprehensive set V24\ parent wgEncodeGencodeV24\ shortLabel PolyA\ track wgEncodeGencodeV24ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV23View2Way 2-Way genePred All GENCODE transcripts including comprehensive set V23 0 34.182 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE transcripts including comprehensive set V23\ parent wgEncodeGencodeV23\ shortLabel 2-Way\ track wgEncodeGencodeV23View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV23 All GENCODE V23 genePred All GENCODE transcripts including comprehensive set V23 0 34.182 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 23, March 2015) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ As of GENCODE Version 11, Ensembl and GENCODE have converged. The gene\ annotations in the GENCODE comprehensive set are the same as the corresponding\ Ensembl release.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Downloads

    \ GENCODE GFF3 and GTF files are available from the\ GENCODE release 23 site.\ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
      • \
    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
      • \
    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
      • \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 23 corresponds to Ensembl 81 and 82.

    \ \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE transcripts including comprehensive set V23\ priority 34.182\ shortLabel All GENCODE V23\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV23\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV23\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV23\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV23\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV23\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV23\ wgEncodeGencodePdb wgEncodeGencodePdbV23\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV23\ wgEncodeGencodePubMed wgEncodeGencodePubMedV23\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV23\ wgEncodeGencodeTag wgEncodeGencodeTagV23\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV23\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV23\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV23\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV23\ wgEncodeGencodeVersion 23\ wgEncodeGencodeV23ViewGenes Genes genePred All GENCODE transcripts including comprehensive set V23 3 34.182 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,CCDS,cds_end_NF,cds_start_NF,downstream_ATG,exp_conf,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,CCDS,cds_end_NF,cds_start_NF,downstream_ATG,exp_conf,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV23 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV23\ longLabel All GENCODE transcripts including comprehensive set V23\ parent wgEncodeGencodeV23\ shortLabel Genes\ track wgEncodeGencodeV23ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV23ViewPolya PolyA genePred All GENCODE transcripts including comprehensive set V23 0 34.182 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE transcripts including comprehensive set V23\ parent wgEncodeGencodeV23\ shortLabel PolyA\ track wgEncodeGencodeV23ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV22View2Way 2-Way genePred All GENCODE transcripts including comprehensive set V22 0 34.183 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE transcripts including comprehensive set V22\ parent wgEncodeGencodeV22\ shortLabel 2-Way\ track wgEncodeGencodeV22View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV22 All GENCODE V22 genePred All GENCODE transcripts including comprehensive set V22 0 34.183 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 22, March 2015) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ As of GENCODE Version 11, Ensembl and GENCODE have converged. The gene\ annotations in the GENCODE comprehensive set are the same as the corresponding\ Ensembl release.\

    \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
      • \
    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
        • \
      • coding - display protein coding transcripts, including polymorphic pseudogenes
        • \
      • nonCoding - display non-protein coding transcripts
        • \
      • pseudo - display pseudogene transcript annotations
        • \
      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
      \
      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
        \
      • All - don't filter by transcript class
        • \
      • manual - display manually created annotations, including those that are \ also created automatically
        • \
      • automatic - display automatically created annotations, including those that are \ also created manually
        • \
      • manual_only - display manually created annotations that were\ not annotated by the automatic method
        • \
      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
      • \
    • Transcript Biotype: filter transcripts by\ Biotype
      • \
    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
        \
      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • Criteria for selection of non-coding transcripts at a given locus:\
        \
      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
        • \
      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
        • \
      \
      • \
    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
      • \
    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

    \
      \
    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
      • \
    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
      • \
    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

    \ \
      \
    • Protein_coding genes\
        \
      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
        \
      4. CARS score (only for coding transcripts)
        \
      5. Transcript genomic span and length (only for non-coding transcripts)
        \
      \
    • Non-coding genes\
        \
      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

    \ \
      \
    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
      • \
    • tsl3 - the only support is from a single EST
      • \
    • tsl4 - the best supporting EST is flagged as suspect
      • \
    • tsl5 - no single transcript supports the model structure
      • \
    • tslNA - the transcript was not analyzed for one of the following reasons:\
        \
      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

    \
      \
    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \ \
    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
      • \
    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
      • \
    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

    \

    \ GENCODE version 22 corresponds to Ensembl 79.

    \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE transcripts including comprehensive set V22\ priority 34.183\ shortLabel All GENCODE V22\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV22\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV22\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV22\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV22\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV22\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV22\ wgEncodeGencodePdb wgEncodeGencodePdbV22\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV22\ wgEncodeGencodePubMed wgEncodeGencodePubMedV22\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV22\ wgEncodeGencodeTag wgEncodeGencodeTagV22\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV22\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV22\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV22\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV22\ wgEncodeGencodeVersion 22\ wgEncodeGencodeV22ViewGenes Genes genePred All GENCODE transcripts including comprehensive set V22 3 34.183 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,CCDS,cds_end_NF,cds_start_NF,downstream_ATG,exp_conf,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,CCDS,cds_end_NF,cds_start_NF,downstream_ATG,exp_conf,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV22 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV22\ longLabel All GENCODE transcripts including comprehensive set V22\ parent wgEncodeGencodeV22\ shortLabel Genes\ track wgEncodeGencodeV22ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV22ViewPolya PolyA genePred All GENCODE transcripts including comprehensive set V22 0 34.183 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE transcripts including comprehensive set V22\ parent wgEncodeGencodeV22\ shortLabel PolyA\ track wgEncodeGencodeV22ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV20View2Way 2-Way genePred Gene Annotations from GENCODE Version 20 (Ensembl 76) 0 34.185 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel Gene Annotations from GENCODE Version 20 (Ensembl 76)\ parent wgEncodeGencodeV20\ shortLabel 2-Way\ track wgEncodeGencodeV20View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV20 GENCODE V20 (Ensembl 76) genePred Gene Annotations from GENCODE Version 20 (Ensembl 76) 0 34.185 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The GENCODE Genes track (version 20, August 2014) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The annotation was carried out on genome assembly GRCh38 (hg38).\

    \

    \ As of GENCODE Version 11, Ensembl and GENCODE have converged. The gene\ annotations in the GENCODE comprehensive set are the same as the corresponding\ Ensembl release. UCSC will continue to provide a separate Ensembl track on\ Human in the same format as the Ensembl tracks on other organisms.\

    \ \

    Display Conventions and Configuration

    \

    \ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.

    \ Views available on this track are:\
    \
    Genes
    \
    The gene annotations in this view are divided into three subtracks:
    \
    \
      \
    • GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section.
      • \
    • GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set.
      • \
    • GENCODE Pseudogenes include all annotations except polymorphic pseudogenes.
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    \ \
    \
    PolyA
    \
    \
      \
    • GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome.
      • \
    \ \

    \ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\

    \ \

    Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:

    \
      \
    • Transcript class: filter by the basic biological function of a transcript\ annotation\
        \
      • All - don't filter by transcript class
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      • coding - display protein coding transcripts, including polymorphic pseudogenes
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      • nonCoding - display non-protein coding transcripts
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      • pseudo - display pseudogene transcript annotations
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      • problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
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      • \ \
    • Transcript Annotation Method: filter by the method used to create the annotation\
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      • All - don't filter by transcript class
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      • manual - display manually created annotations, including those that are \ also created automatically
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      • automatic - display automatically created annotations, including those that are \ also created manually
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      • manual_only - display manually created annotations that were\ not annotated by the automatic method
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      • automatic_only - display automatically created annotations that were\ not annotated by the manual method
        • \
      \
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    • Transcript Biotype: filter transcripts by\ Biotype
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    • Support Level: filter transcripts by transcription support level
      • \
    \ \

    Coloring for the gene annotations is based on the annotation type:

    \
      \
    • coding \
    • non-coding \
    • pseudogene \
    • problem\
    • all polyA annotations\
    \ \

    Methods

    \ \

    \ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\

    \ \

    \ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\

    \
      \
    • Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\ locus:\
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      • All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set.
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      • If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts).
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      \
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    • Criteria for selection of non-coding transcripts at a given locus:\
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      • All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set.
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      • If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts).
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      \
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    • If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\
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    \ \

    \ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\

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    • well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA
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    • poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping
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    \ \

    Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\

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      \
    • Protein_coding genes\
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      1. MANE or Ensembl canonical
        \ -1st: MANE Select / Ensembl canonical
        \ -2nd: MANE Plus Clinical
        \
      2. Coding biotypes
        \ -1st: protein_coding and protein_coding_LoF
        \ -2nd: NMDs and NSDs
        \ -3rd: retained intron and protein_coding_CDS_not_defined
        \
      3. Completeness
        \ -1st: full length
        \ -2nd: CDS start/end not found
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      4. CARS score (only for coding transcripts)
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      5. Transcript genomic span and length (only for non-coding transcripts)
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      \
    • Non-coding genes\
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      1. Transcript biotype
        \ -1st: transcript biotype identical to gene biotype\
      2. Ensembl canonical\
      3. GENCODE basic\
      4. Transcript genomic span\
      5. Transcript length\
      \
    \ \

    \ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.

    \ \

    The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.

    \ \

    Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.

    \ \

    The following categories are assigned to each of the evaluated annotations:

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    • tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
    • tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs
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    • tsl3 - the only support is from a single EST
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    • tsl4 - the best supporting EST is flagged as suspect
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    • tsl5 - no single transcript supports the model structure
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    • tslNA - the transcript was not analyzed for one of the following reasons:\
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      • pseudogene annotation, including transcribed pseudogenes\
      • immunoglobin gene transcript\
      • T-cell receptor transcript\
      • single-exon transcript (will be included in a future version)\
      \
      • \
    \ \

    APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.

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    • PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
    • PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
    • PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
    • PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
    • PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
    • ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
    • ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
    \ \ \ \

    Verification

    \ \

    \ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:

    \
      \
    • GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes).
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    • GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009.
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    • GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human.
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    • GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010).
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    • GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010).
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    • GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data.
      • \
    \

    See Harrow et al. (2006) for information on verification\ techniques.\

    \ \

    Release Notes

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    \ GENCODE version 20 corresponds to Ensembl 76 and Vega 56.

    \ \

    See also: The GENCODE Project\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

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FGF2, 03hr, biol_rep2 (LK20)_CNhs13364_12746-136A1_reverse 0 36 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12746-136A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep2%20%28LK20%29.CNhs13364.12746-136A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep2 (LK20)_CNhs13364_12746-136A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12746-136A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_03hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep2LK20_CNhs13364_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12746-136A1\ urlLabel FANTOM5 Details:\ netHprcGCA_018472565v1 HG00673.mat netAlign GCA_018472565.1 chainHprcGCA_018472565v1 HG00673.mat HG00673.pri.mat.f1_v2 (May 2021 GCA_018472565.1_HG00673.pri.mat.f1_v2) HPRC project computed Chain Nets 1 36 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00673.mat HG00673.pri.mat.f1_v2 (May 2021 GCA_018472565.1_HG00673.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472565.1\ parent hprcChainNetViewnet off\ priority 78\ shortLabel HG00673.mat\ subGroups view=net sample=s078 population=eas subpop=chs hap=mat\ track netHprcGCA_018472565v1\ type netAlign GCA_018472565.1 chainHprcGCA_018472565v1\ wgEncodeRegDnaseUwHgfPeak HGF Pk narrowPeak HGF gingival fibroblast DNaseI Peaks from ENCODE 1 36 204 255 85 229 255 170 1 0 0 regulation 1 color 204,255,85\ longLabel HGF gingival fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HGF Pk\ subGroups view=a_Peaks cellType=HGF treatment=n_a tissue=periodontium cancer=normal\ track wgEncodeRegDnaseUwHgfPeak\ wgEncodeRegDnaseUwHgfWig HGF Sg bigWig 0 3410.39 HGF gingival fibroblast DNaseI Signal from ENCODE 0 36 204 255 85 229 255 170 0 0 0 regulation 1 color 204,255,85\ longLabel HGF gingival fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.29794\ shortLabel HGF Sg\ subGroups cellType=HGF treatment=n_a tissue=periodontium cancer=normal\ table wgEncodeRegDnaseUwHgfSignal\ track wgEncodeRegDnaseUwHgfWig\ type bigWig 0 3410.39\ gtexCovLiver Liver bigWig Liver 0 36 205 183 158 230 219 206 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-Y5LM-0426-SM-4VBRO.Liver.RNAseq.bw\ color 205,183,158\ longLabel Liver\ parent gtexCov\ shortLabel Liver\ track gtexCovLiver\ encTfChipPkENCFF897QCA A549 RAD21 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in A549 from ENCODE 3 (ENCFF897QCA) 0 37 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of RAD21 in A549 from ENCODE 3 (ENCFF897QCA)\ parent encTfChipPk off\ shortLabel A549 RAD21\ subGroups cellType=A549 factor=RAD21\ track encTfChipPkENCFF897QCA\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_tpm_fwd AorticSmsToFgf2_03hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_forward 1 37 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep3%20%28LK21%29.CNhs13573.12844-137B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12844-137B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_03hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_ctss_fwd AorticSmsToFgf2_03hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_forward 0 37 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep3%20%28LK21%29.CNhs13573.12844-137B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12844-137B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_03hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472605v1 HG00621.mat chain GCA_018472605.1 HG00621.mat HG00621.pri.mat.f1_v2 (May 2021 GCA_018472605.1_HG00621.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 37 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00621.mat HG00621.pri.mat.f1_v2 (May 2021 GCA_018472605.1_HG00621.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472605.1\ parent hprcChainNetViewchain off\ priority 82\ shortLabel HG00621.mat\ subGroups view=chain sample=s082 population=eas subpop=chs hap=mat\ track chainHprcGCA_018472605v1\ type chain GCA_018472605.1\ gtexCovLung Lung bigWig Lung 0 37 154 205 50 204 230 152 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-Y5V5-0826-SM-4VBQD.Lung.RNAseq.bw\ color 154,205,50\ longLabel Lung\ parent gtexCov\ shortLabel Lung\ track gtexCovLung\ wgEncodeRegDnaseUwNhdfneoPeak NHDF-neo Pk narrowPeak NHDF-neo dermal fibroblast, neonate DNaseI Peaks from ENCODE 1 37 198 255 85 226 255 170 1 0 0 regulation 1 color 198,255,85\ longLabel NHDF-neo dermal fibroblast, neonate DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel NHDF-neo Pk\ subGroups view=a_Peaks cellType=NHDF-neo treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwNhdfneoPeak\ wgEncodeRegDnaseUwNhdfneoWig NHDF-neo Sg bigWig 0 13455.2 NHDF-neo dermal fibroblast, neonate DNaseI Signal from ENCODE 0 37 198 255 85 226 255 170 0 0 0 regulation 1 color 198,255,85\ longLabel NHDF-neo dermal fibroblast, neonate DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.3069\ shortLabel NHDF-neo Sg\ subGroups cellType=NHDF-neo treatment=n_a tissue=skin cancer=normal\ table wgEncodeRegDnaseUwNhdfneoSignal\ track wgEncodeRegDnaseUwNhdfneoWig\ type bigWig 0 13455.2\ encTfChipPkENCFF993WZP A549 RCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of RCOR1 in A549 from ENCODE 3 (ENCFF993WZP) 0 38 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of RCOR1 in A549 from ENCODE 3 (ENCFF993WZP)\ parent encTfChipPk off\ shortLabel A549 RCOR1\ subGroups cellType=A549 factor=RCOR1\ track encTfChipPkENCFF993WZP\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_tpm_rev AorticSmsToFgf2_03hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_reverse 1 38 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep3%20%28LK21%29.CNhs13573.12844-137B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12844-137B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_03hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_ctss_rev AorticSmsToFgf2_03hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_reverse 0 38 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep3%20%28LK21%29.CNhs13573.12844-137B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12844-137B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_03hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHaepicPeak HAEpiC Pk narrowPeak HAEpiC amniotic epithelium (AEC) DNaseI Peaks from ENCODE 1 38 189 255 85 222 255 170 1 0 0 regulation 1 color 189,255,85\ longLabel HAEpiC amniotic epithelium (AEC) DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HAEpiC Pk\ subGroups view=a_Peaks cellType=HAEpiC treatment=n_a tissue=embryo cancer=normal\ track wgEncodeRegDnaseUwHaepicPeak\ wgEncodeRegDnaseUwHaepicWig HAEpiC Sg bigWig 0 10858.1 HAEpiC amniotic epithelium (AEC) DNaseI Signal from ENCODE 0 38 189 255 85 222 255 170 0 0 0 regulation 1 color 189,255,85\ longLabel HAEpiC amniotic epithelium (AEC) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.32226\ shortLabel HAEpiC Sg\ subGroups cellType=HAEpiC treatment=n_a tissue=embryo cancer=normal\ table wgEncodeRegDnaseUwHaepicSignal\ track wgEncodeRegDnaseUwHaepicWig\ type bigWig 0 10858.1\ netHprcGCA_018472605v1 HG00621.mat netAlign GCA_018472605.1 chainHprcGCA_018472605v1 HG00621.mat HG00621.pri.mat.f1_v2 (May 2021 GCA_018472605.1_HG00621.pri.mat.f1_v2) HPRC project computed Chain Nets 1 38 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00621.mat HG00621.pri.mat.f1_v2 (May 2021 GCA_018472605.1_HG00621.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472605.1\ parent hprcChainNetViewnet off\ priority 82\ shortLabel HG00621.mat\ subGroups view=net sample=s082 population=eas subpop=chs hap=mat\ track netHprcGCA_018472605v1\ type netAlign GCA_018472605.1 chainHprcGCA_018472605v1\ gtexCovMinorSalivaryGland Minor Saliv Gland bigWig Minor Salivary Gland 0 38 205 183 158 230 219 206 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-Y5LM-1826-SM-4VDT9.Minor_Salivary_Gland.RNAseq.bw\ color 205,183,158\ longLabel Minor Salivary Gland\ parent gtexCov\ shortLabel Minor Saliv Gland\ track gtexCovMinorSalivaryGland\ encTfChipPkENCFF107EWI A549 REST 1 narrowPeak Transcription Factor ChIP-seq Peaks of REST in A549 from ENCODE 3 (ENCFF107EWI) 0 39 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of REST in A549 from ENCODE 3 (ENCFF107EWI)\ parent encTfChipPk off\ shortLabel A549 REST 1\ subGroups cellType=A549 factor=REST\ track encTfChipPkENCFF107EWI\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_tpm_fwd AorticSmsToFgf2_05hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_forward 1 39 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep1%20%28LK25%29.CNhs13347.12650-134H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12650-134H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_05hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_ctss_fwd AorticSmsToFgf2_05hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_forward 0 39 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep1%20%28LK25%29.CNhs13347.12650-134H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12650-134H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_05hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472575v1 HG00621.pat chain GCA_018472575.1 HG00621.pat HG00621.alt.pat.f1_v2 (May 2021 GCA_018472575.1_HG00621.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 39 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00621.pat HG00621.alt.pat.f1_v2 (May 2021 GCA_018472575.1_HG00621.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472575.1\ parent hprcChainNetViewchain off\ priority 79\ shortLabel HG00621.pat\ subGroups view=chain sample=s079 population=eas subpop=chs hap=pat\ track chainHprcGCA_018472575v1\ type chain GCA_018472575.1\ gtexCovMuscleSkeletal Muscle Skeletal bigWig Muscle Skeletal 0 39 122 103 238 188 179 246 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-NFK9-0626-SM-2HMIV.Muscle_Skeletal.RNAseq.bw\ color 122,103,238\ longLabel Muscle Skeletal\ parent gtexCov\ shortLabel Muscle Skeletal\ track gtexCovMuscleSkeletal\ wgEncodeRegDnaseUwSkmcPeak SKMC Pk narrowPeak SKMC skeletal muscle cell DNaseI Peaks from ENCODE 1 39 182 255 85 218 255 170 1 0 0 regulation 1 color 182,255,85\ longLabel SKMC skeletal muscle cell DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel SKMC Pk\ subGroups view=a_Peaks cellType=SKMC treatment=n_a tissue=muscle cancer=normal\ track wgEncodeRegDnaseUwSkmcPeak\ wgEncodeRegDnaseUwSkmcWig SKMC Sg bigWig 0 2130.04 SKMC skeletal muscle cell DNaseI Signal from ENCODE 0 39 182 255 85 218 255 170 0 0 0 regulation 1 color 182,255,85\ longLabel SKMC skeletal muscle cell DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.3337\ shortLabel SKMC Sg\ subGroups cellType=SKMC treatment=n_a tissue=muscle cancer=normal\ table wgEncodeRegDnaseUwSkmcSignal\ track wgEncodeRegDnaseUwSkmcWig\ type bigWig 0 2130.04\ encTfChipPkENCFF706DRE A549 REST 2 narrowPeak Transcription Factor ChIP-seq Peaks of REST in A549 from ENCODE 3 (ENCFF706DRE) 0 40 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of REST in A549 from ENCODE 3 (ENCFF706DRE)\ parent encTfChipPk off\ shortLabel A549 REST 2\ subGroups cellType=A549 factor=REST\ track encTfChipPkENCFF706DRE\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_tpm_rev AorticSmsToFgf2_05hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_reverse 1 40 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep1%20%28LK25%29.CNhs13347.12650-134H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12650-134H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_05hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_ctss_rev AorticSmsToFgf2_05hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_reverse 0 40 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep1%20%28LK25%29.CNhs13347.12650-134H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12650-134H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_05hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHbvsmcPeak HBVSMC Pk narrowPeak HBVSMC brain vascular smooth muscle DNaseI Peaks from ENCODE 1 40 176 255 85 215 255 170 1 0 0 regulation 1 color 176,255,85\ longLabel HBVSMC brain vascular smooth muscle DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HBVSMC Pk\ subGroups view=a_Peaks cellType=HBVSMC treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHbvsmcPeak\ wgEncodeRegDnaseUwHbvsmcWig HBVSMC Sg bigWig 0 3766.42 HBVSMC brain vascular smooth muscle DNaseI Signal from ENCODE 0 40 176 255 85 215 255 170 0 0 0 regulation 1 color 176,255,85\ longLabel HBVSMC brain vascular smooth muscle DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.34687\ shortLabel HBVSMC Sg\ subGroups cellType=HBVSMC treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHbvsmcSignal\ track wgEncodeRegDnaseUwHbvsmcWig\ type bigWig 0 3766.42\ netHprcGCA_018472575v1 HG00621.pat netAlign GCA_018472575.1 chainHprcGCA_018472575v1 HG00621.pat HG00621.alt.pat.f1_v2 (May 2021 GCA_018472575.1_HG00621.alt.pat.f1_v2) HPRC project computed Chain Nets 1 40 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00621.pat HG00621.alt.pat.f1_v2 (May 2021 GCA_018472575.1_HG00621.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472575.1\ parent hprcChainNetViewnet off\ priority 79\ shortLabel HG00621.pat\ subGroups view=net sample=s079 population=eas subpop=chs hap=pat\ track netHprcGCA_018472575v1\ type netAlign GCA_018472575.1 chainHprcGCA_018472575v1\ gtexCovNerveTibial Nerve Tibial bigWig Nerve Tibial 0 40 255 215 0 255 235 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-TML8-1626-SM-32QOO.Nerve_Tibial.RNAseq.bw\ color 255,215,0\ longLabel Nerve Tibial\ parent gtexCov\ shortLabel Nerve Tibial\ track gtexCovNerveTibial\ encTfChipPkENCFF179WDI A549 RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in A549 from ENCODE 3 (ENCFF179WDI) 0 41 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of RFX5 in A549 from ENCODE 3 (ENCFF179WDI)\ parent encTfChipPk off\ shortLabel A549 RFX5\ subGroups cellType=A549 factor=RFX5\ track encTfChipPkENCFF179WDI\ wgEncodeRegDnaseUwAg04449Peak AG04449 Pk narrowPeak AG04449 fetal skin fibroblast DNaseI Peaks from ENCODE 1 41 152 255 85 203 255 170 1 0 0 regulation 1 color 152,255,85\ longLabel AG04449 fetal skin fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel AG04449 Pk\ subGroups view=a_Peaks cellType=AG04449 treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwAg04449Peak\ wgEncodeRegDnaseUwAg04449Wig AG04449 Sg bigWig 0 20132.8 AG04449 fetal skin fibroblast DNaseI Signal from ENCODE 0 41 152 255 85 203 255 170 0 0 0 regulation 1 color 152,255,85\ longLabel AG04449 fetal skin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.36656\ shortLabel AG04449 Sg\ subGroups cellType=AG04449 treatment=n_a tissue=skin cancer=normal\ table wgEncodeRegDnaseUwAg04449Signal\ track wgEncodeRegDnaseUwAg04449Wig\ type bigWig 0 20132.8\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_tpm_fwd AorticSmsToFgf2_05hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_forward 1 41 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep2%20%28LK26%29.CNhs13367.12748-136A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12748-136A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_05hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_ctss_fwd AorticSmsToFgf2_05hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_forward 0 41 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep2%20%28LK26%29.CNhs13367.12748-136A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12748-136A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_05hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472585v1 HG00673.pat chain GCA_018472585.1 HG00673.pat HG00673.alt.pat.f1_v2 (May 2021 GCA_018472585.1_HG00673.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 41 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00673.pat HG00673.alt.pat.f1_v2 (May 2021 GCA_018472585.1_HG00673.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472585.1\ parent hprcChainNetViewchain off\ priority 80\ shortLabel HG00673.pat\ subGroups view=chain sample=s080 population=eas subpop=chs hap=pat\ track chainHprcGCA_018472585v1\ type chain GCA_018472585.1\ gtexCovOvary Ovary bigWig Ovary 0 41 255 182 193 255 218 224 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-ZVT2-0326-SM-5E44G.Ovary.RNAseq.bw\ color 255,182,193\ longLabel Ovary\ parent gtexCov\ shortLabel Ovary\ track gtexCovOvary\ encTfChipPkENCFF110EOX A549 RNF2 narrowPeak Transcription Factor ChIP-seq Peaks of RNF2 in A549 from ENCODE 3 (ENCFF110EOX) 0 42 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of RNF2 in A549 from ENCODE 3 (ENCFF110EOX)\ parent encTfChipPk off\ shortLabel A549 RNF2\ subGroups cellType=A549 factor=RNF2\ track encTfChipPkENCFF110EOX\ wgEncodeRegDnaseUwAg04450Peak AG04450 Pk narrowPeak AG04450 fetal lung fibroblast DNaseI Peaks from ENCODE 1 42 144 255 85 199 255 170 1 0 0 regulation 1 color 144,255,85\ longLabel AG04450 fetal lung fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel AG04450 Pk\ subGroups view=a_Peaks cellType=AG04450 treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwAg04450Peak\ wgEncodeRegDnaseUwAg04450Wig AG04450 Sg bigWig 0 18229.7 AG04450 fetal lung fibroblast DNaseI Signal from ENCODE 0 42 144 255 85 199 255 170 0 0 0 regulation 1 color 144,255,85\ longLabel AG04450 fetal lung fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.37094\ shortLabel AG04450 Sg\ subGroups cellType=AG04450 treatment=n_a tissue=lung cancer=normal\ table wgEncodeRegDnaseUwAg04450Signal\ track wgEncodeRegDnaseUwAg04450Wig\ type bigWig 0 18229.7\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_tpm_rev AorticSmsToFgf2_05hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_reverse 1 42 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep2%20%28LK26%29.CNhs13367.12748-136A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12748-136A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_05hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_ctss_rev AorticSmsToFgf2_05hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_reverse 0 42 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep2%20%28LK26%29.CNhs13367.12748-136A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12748-136A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_05hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3\ urlLabel FANTOM5 Details:\ netHprcGCA_018472585v1 HG00673.pat netAlign GCA_018472585.1 chainHprcGCA_018472585v1 HG00673.pat HG00673.alt.pat.f1_v2 (May 2021 GCA_018472585.1_HG00673.alt.pat.f1_v2) HPRC project computed Chain Nets 1 42 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00673.pat HG00673.alt.pat.f1_v2 (May 2021 GCA_018472585.1_HG00673.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472585.1\ parent hprcChainNetViewnet off\ priority 80\ shortLabel HG00673.pat\ subGroups view=net sample=s080 population=eas subpop=chs hap=pat\ track netHprcGCA_018472585v1\ type netAlign GCA_018472585.1 chainHprcGCA_018472585v1\ gtexCovPancreas Pancreas bigWig Pancreas 0 42 205 155 29 230 205 142 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1H1E6-0826-SM-9WG83.Pancreas.RNAseq.bw\ color 205,155,29\ longLabel Pancreas\ parent gtexCov\ shortLabel Pancreas\ track gtexCovPancreas\ encTfChipPkENCFF567BJI A549 SIN3A 1 narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in A549 from ENCODE 3 (ENCFF567BJI) 0 43 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of SIN3A in A549 from ENCODE 3 (ENCFF567BJI)\ parent encTfChipPk off\ shortLabel A549 SIN3A 1\ subGroups cellType=A549 factor=SIN3A\ track encTfChipPkENCFF567BJI\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_tpm_fwd AorticSmsToFgf2_05hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_forward 1 43 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep3%20%28LK27%29.CNhs13575.12846-137C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12846-137C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_05hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_ctss_fwd AorticSmsToFgf2_05hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_forward 0 43 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep3%20%28LK27%29.CNhs13575.12846-137C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12846-137C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_05hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHahPeak HA-h Pk narrowPeak HA-h hippocampal astrocyte DNaseI Peaks from ENCODE 1 43 122 255 85 188 255 170 1 0 0 regulation 1 color 122,255,85\ longLabel HA-h hippocampal astrocyte DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HA-h Pk\ subGroups view=a_Peaks cellType=HA-h treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwHahPeak\ wgEncodeRegDnaseUwHahWig HA-h Sg bigWig 0 10262.5 HA-h hippocampal astrocyte DNaseI Signal from ENCODE 0 43 122 255 85 188 255 170 0 0 0 regulation 1 color 122,255,85\ longLabel HA-h hippocampal astrocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.38256\ shortLabel HA-h Sg\ subGroups cellType=HA-h treatment=n_a tissue=brain cancer=normal\ table wgEncodeRegDnaseUwHahSignal\ track wgEncodeRegDnaseUwHahWig\ type bigWig 0 10262.5\ chainHprcGCA_018472595v1 HG00438.pat chain GCA_018472595.1 HG00438.pat HG00438.alt.pat.f1_v2 (May 2021 GCA_018472595.1_HG00438.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 43 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00438.pat HG00438.alt.pat.f1_v2 (May 2021 GCA_018472595.1_HG00438.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472595.1\ parent hprcChainNetViewchain off\ priority 81\ shortLabel HG00438.pat\ subGroups view=chain sample=s081 population=eas subpop=chs hap=pat\ track chainHprcGCA_018472595v1\ type chain GCA_018472595.1\ gtexCovPituitary Pituitary bigWig Pituitary 0 43 180 238 180 217 246 217 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-Y111-2926-SM-4TT25.Pituitary.RNAseq.bw\ color 180,238,180\ longLabel Pituitary\ parent gtexCov\ shortLabel Pituitary\ track gtexCovPituitary\ encTfChipPkENCFF708HTR A549 SIN3A 2 narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in A549 from ENCODE 3 (ENCFF708HTR) 0 44 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of SIN3A in A549 from ENCODE 3 (ENCFF708HTR)\ parent encTfChipPk off\ shortLabel A549 SIN3A 2\ subGroups cellType=A549 factor=SIN3A\ track encTfChipPkENCFF708HTR\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_tpm_rev AorticSmsToFgf2_05hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_reverse 1 44 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep3%20%28LK27%29.CNhs13575.12846-137C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12846-137C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_05hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_ctss_rev AorticSmsToFgf2_05hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_reverse 0 44 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep3%20%28LK27%29.CNhs13575.12846-137C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12846-137C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_05hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2\ urlLabel FANTOM5 Details:\ netHprcGCA_018472595v1 HG00438.pat netAlign GCA_018472595.1 chainHprcGCA_018472595v1 HG00438.pat HG00438.alt.pat.f1_v2 (May 2021 GCA_018472595.1_HG00438.alt.pat.f1_v2) HPRC project computed Chain Nets 1 44 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00438.pat HG00438.alt.pat.f1_v2 (May 2021 GCA_018472595.1_HG00438.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472595.1\ parent hprcChainNetViewnet off\ priority 81\ shortLabel HG00438.pat\ subGroups view=net sample=s081 population=eas subpop=chs hap=pat\ track netHprcGCA_018472595v1\ type netAlign GCA_018472595.1 chainHprcGCA_018472595v1\ wgEncodeRegDnaseUwM059jPeak M059J Pk narrowPeak M059J glioblastoma cell line DNaseI Peaks from ENCODE 1 44 96 255 85 175 255 170 1 0 0 regulation 1 color 96,255,85\ longLabel M059J glioblastoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel M059J Pk\ subGroups view=a_Peaks cellType=M059J treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwM059jPeak\ wgEncodeRegDnaseUwM059jWig M059J Sg bigWig 0 6527.58 M059J glioblastoma cell line DNaseI Signal from ENCODE 0 44 96 255 85 175 255 170 0 0 0 regulation 1 color 96,255,85\ longLabel M059J glioblastoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.39616\ shortLabel M059J Sg\ subGroups cellType=M059J treatment=n_a tissue=brain cancer=cancer\ table wgEncodeRegDnaseUwM059jSignal\ track wgEncodeRegDnaseUwM059jWig\ type bigWig 0 6527.58\ gtexCovProstate Prostate bigWig Prostate 0 44 217 217 217 236 236 236 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-14DAR-1026-SM-73KV3.Prostate.RNAseq.bw\ color 217,217,217\ longLabel Prostate\ parent gtexCov\ shortLabel Prostate\ track gtexCovProstate\ encTfChipPkENCFF189NMX A549 SIX5 narrowPeak Transcription Factor ChIP-seq Peaks of SIX5 in A549 from ENCODE 3 (ENCFF189NMX) 0 45 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of SIX5 in A549 from ENCODE 3 (ENCFF189NMX)\ parent encTfChipPk off\ shortLabel A549 SIX5\ subGroups cellType=A549 factor=SIX5\ track encTfChipPkENCFF189NMX\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_tpm_fwd AorticSmsToFgf2_06hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_forward 1 45 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep1%20%28LK28%29.CNhs13348.12651-134H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12651-134H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_06hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_ctss_fwd AorticSmsToFgf2_06hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_forward 0 45 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep1%20%28LK28%29.CNhs13348.12651-134H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12651-134H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_06hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5\ urlLabel FANTOM5 Details:\ chainHprcGCA_018469405v1 HG01258.mat chain GCA_018469405.1 HG01258.mat HG01258.pri.mat.f1_v2 (May 2021 GCA_018469405.1_HG01258.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 45 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01258.mat HG01258.pri.mat.f1_v2 (May 2021 GCA_018469405.1_HG01258.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469405.1\ parent hprcChainNetViewchain off\ priority 69\ shortLabel HG01258.mat\ subGroups view=chain sample=s069 population=amr subpop=clm hap=mat\ track chainHprcGCA_018469405v1\ type chain GCA_018469405.1\ wgEncodeRegDnaseUwRpmi7951Peak RPMI-7951 Pk narrowPeak RPMI-7951 melanoma cell line DNaseI Peaks from ENCODE 1 45 85 255 90 170 255 172 1 0 0 regulation 1 color 85,255,90\ longLabel RPMI-7951 melanoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel RPMI-7951 Pk\ subGroups view=a_Peaks cellType=RPMI-7951 treatment=n_a tissue=skin cancer=cancer\ track wgEncodeRegDnaseUwRpmi7951Peak\ wgEncodeRegDnaseUwRpmi7951Wig RPMI-7951 Sg bigWig 0 7339.21 RPMI-7951 melanoma cell line DNaseI Signal from ENCODE 0 45 85 255 90 170 255 172 0 0 0 regulation 1 color 85,255,90\ longLabel RPMI-7951 melanoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.40485\ shortLabel RPMI-7951 Sg\ subGroups cellType=RPMI-7951 treatment=n_a tissue=skin cancer=cancer\ table wgEncodeRegDnaseUwRpmi7951Signal\ track wgEncodeRegDnaseUwRpmi7951Wig\ type bigWig 0 7339.21\ gtexCovSkinNotSunExposedSuprapubic Skin not sun exp bigWig Skin Not Sun Exposed Suprapubic 0 45 58 95 205 156 175 230 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1JN76-0626-SM-CKZOQ.Skin_Not_Sun_Exposed_Suprapubic.RNAseq.bw\ color 58,95,205\ longLabel Skin Not Sun Exposed Suprapubic\ parent gtexCov\ shortLabel Skin not sun exp\ track gtexCovSkinNotSunExposedSuprapubic\ encTfChipPkENCFF256LDD A549 SMC3 narrowPeak Transcription Factor ChIP-seq Peaks of SMC3 in A549 from ENCODE 3 (ENCFF256LDD) 0 46 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of SMC3 in A549 from ENCODE 3 (ENCFF256LDD)\ parent encTfChipPk off\ shortLabel A549 SMC3\ subGroups cellType=A549 factor=SMC3\ track encTfChipPkENCFF256LDD\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_tpm_rev AorticSmsToFgf2_06hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_reverse 1 46 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep1%20%28LK28%29.CNhs13348.12651-134H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12651-134H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_06hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_ctss_rev AorticSmsToFgf2_06hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_reverse 0 46 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep1%20%28LK28%29.CNhs13348.12651-134H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12651-134H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_06hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHaspPeak HA-sp Pk narrowPeak HA-sp spinal cord astrocyte DNaseI Peaks from ENCODE 1 46 85 255 124 170 255 189 1 0 0 regulation 1 color 85,255,124\ longLabel HA-sp spinal cord astrocyte DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HA-sp Pk\ subGroups view=a_Peaks cellType=HA-sp treatment=n_a tissue=spinal_cord cancer=normal\ track wgEncodeRegDnaseUwHaspPeak\ wgEncodeRegDnaseUwHaspWig HA-sp Sg bigWig 0 8189.49 HA-sp spinal cord astrocyte DNaseI Signal from ENCODE 0 46 85 255 124 170 255 189 0 0 0 regulation 1 color 85,255,124\ longLabel HA-sp spinal cord astrocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.42221\ shortLabel HA-sp Sg\ subGroups cellType=HA-sp treatment=n_a tissue=spinal_cord cancer=normal\ table wgEncodeRegDnaseUwHaspSignal\ track wgEncodeRegDnaseUwHaspWig\ type bigWig 0 8189.49\ netHprcGCA_018469405v1 HG01258.mat netAlign GCA_018469405.1 chainHprcGCA_018469405v1 HG01258.mat HG01258.pri.mat.f1_v2 (May 2021 GCA_018469405.1_HG01258.pri.mat.f1_v2) HPRC project computed Chain Nets 1 46 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01258.mat HG01258.pri.mat.f1_v2 (May 2021 GCA_018469405.1_HG01258.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469405.1\ parent hprcChainNetViewnet off\ priority 69\ shortLabel HG01258.mat\ subGroups view=net sample=s069 population=amr subpop=clm hap=mat\ track netHprcGCA_018469405v1\ type netAlign GCA_018469405.1 chainHprcGCA_018469405v1\ gtexCovSkinSunExposedLowerleg Skin sun exp bigWig Skin Sun Exposed Lower leg 0 46 30 144 255 142 199 255 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1C475-1826-SM-73KWA.Skin_Sun_Exposed_Lower_leg.RNAseq.bw\ color 30,144,255\ longLabel Skin Sun Exposed Lower leg\ parent gtexCov\ shortLabel Skin sun exp\ track gtexCovSkinSunExposedLowerleg\ encTfChipPkENCFF404OSB A549 SP1 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in A549 from ENCODE 3 (ENCFF404OSB) 0 47 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of SP1 in A549 from ENCODE 3 (ENCFF404OSB)\ parent encTfChipPk off\ shortLabel A549 SP1\ subGroups cellType=A549 factor=SP1\ track encTfChipPkENCFF404OSB\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_tpm_fwd AorticSmsToFgf2_06hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_forward 1 47 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep2%20%28LK29%29.CNhs13368.12749-136A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12749-136A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_06hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_ctss_fwd AorticSmsToFgf2_06hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_forward 0 47 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep2%20%28LK29%29.CNhs13368.12749-136A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12749-136A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_06hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHcfaaPeak HCFaa Pk narrowPeak HCFaa cardiac fibroblast DNaseI Peaks from ENCODE 1 47 85 255 150 170 255 202 1 0 0 regulation 1 color 85,255,150\ longLabel HCFaa cardiac fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HCFaa Pk\ subGroups view=a_Peaks cellType=HCFaa treatment=n_a tissue=heart cancer=normal\ track wgEncodeRegDnaseUwHcfaaPeak\ wgEncodeRegDnaseUwHcfaaWig HCFaa Sg bigWig 0 3845.33 HCFaa cardiac fibroblast DNaseI Signal from ENCODE 0 47 85 255 150 170 255 202 0 0 0 regulation 1 color 85,255,150\ longLabel HCFaa cardiac fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.43568\ shortLabel HCFaa Sg\ subGroups cellType=HCFaa treatment=n_a tissue=heart cancer=normal\ table wgEncodeRegDnaseUwHcfaaSignal\ track wgEncodeRegDnaseUwHcfaaWig\ type bigWig 0 3845.33\ chainHprcGCA_018469665v1 HG01123.mat chain GCA_018469665.1 HG01123.mat HG01123.pri.mat.f1_v2.1 (May 2021 GCA_018469665.1_HG01123.pri.mat.f1_v2.1) HPRC project computed Chained Alignments 3 47 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01123.mat HG01123.pri.mat.f1_v2.1 (May 2021 GCA_018469665.1_HG01123.pri.mat.f1_v2.1) HPRC project computed Chained Alignments\ otherDb GCA_018469665.1\ parent hprcChainNetViewchain off\ priority 70\ shortLabel HG01123.mat\ subGroups view=chain sample=s070 population=amr subpop=clm hap=mat\ track chainHprcGCA_018469665v1\ type chain GCA_018469665.1\ gtexCovSmallIntestineTerminalIleum Small Intestine bigWig Small Intestine Terminal Ileum 0 47 205 183 158 230 219 206 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1PIEJ-1526-SM-E6CP8.Small_Intestine_Terminal_Ileum.RNAseq.bw\ color 205,183,158\ longLabel Small Intestine Terminal Ileum\ parent gtexCov\ shortLabel Small Intestine\ track gtexCovSmallIntestineTerminalIleum\ encTfChipPkENCFF624DDK A549 SREBF1 narrowPeak Transcription Factor ChIP-seq Peaks of SREBF1 in A549 from ENCODE 3 (ENCFF624DDK) 0 48 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of SREBF1 in A549 from ENCODE 3 (ENCFF624DDK)\ parent encTfChipPk off\ shortLabel A549 SREBF1\ subGroups cellType=A549 factor=SREBF1\ track encTfChipPkENCFF624DDK\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_tpm_rev AorticSmsToFgf2_06hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_reverse 1 48 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep2%20%28LK29%29.CNhs13368.12749-136A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12749-136A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_06hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_ctss_rev AorticSmsToFgf2_06hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_reverse 0 48 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep2%20%28LK29%29.CNhs13368.12749-136A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12749-136A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_06hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4\ urlLabel FANTOM5 Details:\ netHprcGCA_018469665v1 HG01123.mat netAlign GCA_018469665.1 chainHprcGCA_018469665v1 HG01123.mat HG01123.pri.mat.f1_v2.1 (May 2021 GCA_018469665.1_HG01123.pri.mat.f1_v2.1) HPRC project computed Chain Nets 1 48 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01123.mat HG01123.pri.mat.f1_v2.1 (May 2021 GCA_018469665.1_HG01123.pri.mat.f1_v2.1) HPRC project computed Chain Nets\ otherDb GCA_018469665.1\ parent hprcChainNetViewnet off\ priority 70\ shortLabel HG01123.mat\ subGroups view=net sample=s070 population=amr subpop=clm hap=mat\ track netHprcGCA_018469665v1\ type netAlign GCA_018469665.1 chainHprcGCA_018469665v1\ gtexCovSpleen Spleen bigWig Spleen 0 48 205 183 158 230 219 206 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-14PKU-0526-SM-6871A.Spleen.RNAseq.bw\ color 205,183,158\ longLabel Spleen\ parent gtexCov\ shortLabel Spleen\ track gtexCovSpleen\ wgEncodeRegDnaseUwWi384ohtam20nm72hrPeak WI-38 40HTAM Pk narrowPeak WI-38 embryonic lung fibroblast cell line (40HTAM) DNaseI Peaks from ENCODE 1 48 85 255 171 170 255 213 1 0 0 regulation 1 color 85,255,171\ longLabel WI-38 embryonic lung fibroblast cell line (40HTAM) DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel WI-38 40HTAM Pk\ subGroups view=a_Peaks cellType=WI-38 treatment=OHTAM_20nM_72hr tissue=lung cancer=normal\ track wgEncodeRegDnaseUwWi384ohtam20nm72hrPeak\ wgEncodeRegDnaseUwWi384ohtam20nm72hrWig WI-38 40HTAM Sg bigWig 0 9068.99 WI-38 embryonic lung fibroblast cell line (40HTAM) DNaseI Signal from ENCODE 0 48 85 255 171 170 255 213 0 0 0 regulation 1 color 85,255,171\ longLabel WI-38 embryonic lung fibroblast cell line (40HTAM) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.44843\ shortLabel WI-38 40HTAM Sg\ subGroups cellType=WI-38 treatment=OHTAM_20nM_72hr tissue=lung cancer=normal\ table wgEncodeRegDnaseUwWi384ohtam20nm72hrSignal\ track wgEncodeRegDnaseUwWi384ohtam20nm72hrWig\ type bigWig 0 9068.99\ encTfChipPkENCFF483YCC A549 SREBF2 narrowPeak Transcription Factor ChIP-seq Peaks of SREBF2 in A549 from ENCODE 3 (ENCFF483YCC) 0 49 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of SREBF2 in A549 from ENCODE 3 (ENCFF483YCC)\ parent encTfChipPk off\ shortLabel A549 SREBF2\ subGroups cellType=A549 factor=SREBF2\ track encTfChipPkENCFF483YCC\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_tpm_fwd AorticSmsToFgf2_06hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_forward 1 49 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep3%20%28LK30%29.CNhs13576.12847-137C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12847-137C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_06hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_ctss_fwd AorticSmsToFgf2_06hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_forward 0 49 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep3%20%28LK30%29.CNhs13576.12847-137C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12847-137C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_06hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3\ urlLabel FANTOM5 Details:\ chainHprcGCA_018469685v1 HG01361.mat chain GCA_018469685.1 HG01361.mat HG01361.pri.mat.f1_v2 (May 2021 GCA_018469685.1_HG01361.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 49 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01361.mat HG01361.pri.mat.f1_v2 (May 2021 GCA_018469685.1_HG01361.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469685.1\ parent hprcChainNetViewchain off\ priority 72\ shortLabel HG01361.mat\ subGroups view=chain sample=s072 population=amr subpop=clm hap=mat\ track chainHprcGCA_018469685v1\ type chain GCA_018469685.1\ wgEncodeRegDnaseUwNhdfadPeak NHDF-Ad Pk narrowPeak NHDF-Ad dermal fibroblast DNaseI Peaks from ENCODE 1 49 85 255 180 170 255 217 1 0 0 regulation 1 color 85,255,180\ longLabel NHDF-Ad dermal fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel NHDF-Ad Pk\ subGroups view=a_Peaks cellType=NHDF-Ad treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwNhdfadPeak\ wgEncodeRegDnaseUwNhdfadWig NHDF-Ad Sg bigWig 0 2200.64 NHDF-Ad dermal fibroblast DNaseI Signal from ENCODE 0 49 85 255 180 170 255 217 0 0 0 regulation 1 color 85,255,180\ longLabel NHDF-Ad dermal fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.46595\ shortLabel NHDF-Ad Sg\ subGroups cellType=NHDF-Ad treatment=n_a tissue=skin cancer=normal\ table wgEncodeRegDnaseUwNhdfadSignal\ track wgEncodeRegDnaseUwNhdfadWig\ type bigWig 0 2200.64\ gtexCovStomach Stomach bigWig Stomach 0 49 255 211 155 255 233 205 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-NFK9-1526-SM-3LK7B.Stomach.RNAseq.bw\ color 255,211,155\ longLabel Stomach\ parent gtexCov\ shortLabel Stomach\ track gtexCovStomach\ encTfChipPkENCFF886KDK A549 TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in A549 from ENCODE 3 (ENCFF886KDK) 0 50 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of TAF1 in A549 from ENCODE 3 (ENCFF886KDK)\ parent encTfChipPk off\ shortLabel A549 TAF1\ subGroups cellType=A549 factor=TAF1\ track encTfChipPkENCFF886KDK\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_tpm_rev AorticSmsToFgf2_06hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_reverse 1 50 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep3%20%28LK30%29.CNhs13576.12847-137C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12847-137C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_06hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_ctss_rev AorticSmsToFgf2_06hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_reverse 0 50 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep3%20%28LK30%29.CNhs13576.12847-137C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12847-137C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_06hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3\ urlLabel FANTOM5 Details:\ netHprcGCA_018469685v1 HG01361.mat netAlign GCA_018469685.1 chainHprcGCA_018469685v1 HG01361.mat HG01361.pri.mat.f1_v2 (May 2021 GCA_018469685.1_HG01361.pri.mat.f1_v2) HPRC project computed Chain Nets 1 50 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01361.mat HG01361.pri.mat.f1_v2 (May 2021 GCA_018469685.1_HG01361.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469685.1\ parent hprcChainNetViewnet off\ priority 72\ shortLabel HG01361.mat\ subGroups view=net sample=s072 population=amr subpop=clm hap=mat\ track netHprcGCA_018469685v1\ type netAlign GCA_018469685.1 chainHprcGCA_018469685v1\ wgEncodeRegDnaseUwHsmmPeak HSMM Pk narrowPeak HSMM skeletal muscle myoblast DNaseI Peaks from ENCODE 1 50 85 255 190 170 255 222 1 0 0 regulation 1 color 85,255,190\ longLabel HSMM skeletal muscle myoblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak on\ shortLabel HSMM Pk\ subGroups view=a_Peaks cellType=HSMM treatment=n_a tissue=muscle cancer=normal\ track wgEncodeRegDnaseUwHsmmPeak\ wgEncodeRegDnaseUwHsmmWig HSMM Sg bigWig 0 14177.3 HSMM skeletal muscle myoblast DNaseI Signal from ENCODE 0 50 85 255 190 170 255 222 0 0 0 regulation 1 color 85,255,190\ longLabel HSMM skeletal muscle myoblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig on\ priority 1.48469\ shortLabel HSMM Sg\ subGroups cellType=HSMM treatment=n_a tissue=muscle cancer=normal\ table wgEncodeRegDnaseUwHsmmSignal\ track wgEncodeRegDnaseUwHsmmWig\ type bigWig 0 14177.3\ gtexCovTestis Testis bigWig Testis 0 50 166 166 166 210 210 210 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1JKYN-1026-SM-CGQG4.Testis.RNAseq.bw\ color 166,166,166\ longLabel Testis\ parent gtexCov\ shortLabel Testis\ track gtexCovTestis\ encTfChipPkENCFF228CDD A549 TCF12 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in A549 from ENCODE 3 (ENCFF228CDD) 0 51 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in A549 from ENCODE 3 (ENCFF228CDD)\ parent encTfChipPk off\ shortLabel A549 TCF12\ subGroups cellType=A549 factor=TCF12\ track encTfChipPkENCFF228CDD\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_tpm_fwd AorticSmsToIL1b_00hr00minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_forward 1 51 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep1%20%28LK31%29.CNhs13349.12652-134H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12652-134H6 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToIL1b_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_ctss_fwd AorticSmsToIL1b_00hr00minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_forward 0 51 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep1%20%28LK31%29.CNhs13349.12652-134H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12652-134H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6\ urlLabel FANTOM5 Details:\ chainHprcGCA_018469865v1 HG01358.mat chain GCA_018469865.1 HG01358.mat HG01358.pri.mat.f1_v2.1 (May 2021 GCA_018469865.1_HG01358.pri.mat.f1_v2.1) HPRC project computed Chained Alignments 3 51 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01358.mat HG01358.pri.mat.f1_v2.1 (May 2021 GCA_018469865.1_HG01358.pri.mat.f1_v2.1) HPRC project computed Chained Alignments\ otherDb GCA_018469865.1\ parent hprcChainNetViewchain off\ priority 75\ shortLabel HG01358.mat\ subGroups view=chain sample=s075 population=amr subpop=clm hap=mat\ track chainHprcGCA_018469865v1\ type chain GCA_018469865.1\ wgEncodeRegDnaseUwLhcnm2Peak LHCN-M2 Pk narrowPeak LHCN-M2 skeletal myoblast DNaseI Peaks from ENCODE 1 51 85 255 193 170 255 224 1 0 0 regulation 1 color 85,255,193\ longLabel LHCN-M2 skeletal myoblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel LHCN-M2 Pk\ subGroups view=a_Peaks cellType=LHCN-M2 treatment=n_a tissue=muscle cancer=unknown\ track wgEncodeRegDnaseUwLhcnm2Peak\ wgEncodeRegDnaseUwLhcnm2Wig LHCN-M2 Sg bigWig 0 16877.8 LHCN-M2 skeletal myoblast DNaseI Signal from ENCODE 0 51 85 255 193 170 255 224 0 0 0 regulation 1 color 85,255,193\ longLabel LHCN-M2 skeletal myoblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.48937\ shortLabel LHCN-M2 Sg\ subGroups cellType=LHCN-M2 treatment=n_a tissue=muscle cancer=unknown\ table wgEncodeRegDnaseUwLhcnm2Signal\ track wgEncodeRegDnaseUwLhcnm2Wig\ type bigWig 0 16877.8\ gtexCovThyroid Thyroid bigWig Thyroid 0 51 0 139 69 127 197 162 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1HSGN-0726-SM-A9G2F.Thyroid.RNAseq.bw\ color 0, 139, 69\ longLabel Thyroid\ parent gtexCov\ shortLabel Thyroid\ track gtexCovThyroid\ encTfChipPkENCFF593EOW A549 USF2 narrowPeak Transcription Factor ChIP-seq Peaks of USF2 in A549 from ENCODE 3 (ENCFF593EOW) 0 52 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of USF2 in A549 from ENCODE 3 (ENCFF593EOW)\ parent encTfChipPk off\ shortLabel A549 USF2\ subGroups cellType=A549 factor=USF2\ track encTfChipPkENCFF593EOW\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_tpm_rev AorticSmsToIL1b_00hr00minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_reverse 1 52 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep1%20%28LK31%29.CNhs13349.12652-134H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12652-134H6 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToIL1b_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_ctss_rev AorticSmsToIL1b_00hr00minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_reverse 0 52 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep1%20%28LK31%29.CNhs13349.12652-134H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12652-134H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6\ urlLabel FANTOM5 Details:\ netHprcGCA_018469865v1 HG01358.mat netAlign GCA_018469865.1 chainHprcGCA_018469865v1 HG01358.mat HG01358.pri.mat.f1_v2.1 (May 2021 GCA_018469865.1_HG01358.pri.mat.f1_v2.1) HPRC project computed Chain Nets 1 52 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01358.mat HG01358.pri.mat.f1_v2.1 (May 2021 GCA_018469865.1_HG01358.pri.mat.f1_v2.1) HPRC project computed Chain Nets\ otherDb GCA_018469865.1\ parent hprcChainNetViewnet off\ priority 75\ shortLabel HG01358.mat\ subGroups view=net sample=s075 population=amr subpop=clm hap=mat\ track netHprcGCA_018469865v1\ type netAlign GCA_018469865.1 chainHprcGCA_018469865v1\ wgEncodeRegDnaseUwLhcnm2Diff4dPeak LHCN-M2 diff4d Pk narrowPeak LHCN-M2 skeletal myoblast (diff 4d) DNaseI Peaks from ENCODE 1 52 85 255 198 170 255 226 1 0 0 regulation 1 color 85,255,198\ longLabel LHCN-M2 skeletal myoblast (diff 4d) DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel LHCN-M2 diff4d Pk\ subGroups view=a_Peaks cellType=LHCN-M2 treatment=DIFF_4d tissue=muscle cancer=unknown\ track wgEncodeRegDnaseUwLhcnm2Diff4dPeak\ wgEncodeRegDnaseUwLhcnm2Diff4dWig LHCN-M2 diff4d Sg bigWig 0 44051.9 LHCN-M2 skeletal myoblast (diff 4d) DNaseI Signal from ENCODE 0 52 85 255 198 170 255 226 0 0 0 regulation 1 color 85,255,198\ longLabel LHCN-M2 skeletal myoblast (diff 4d) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.49766\ shortLabel LHCN-M2 diff4d Sg\ subGroups cellType=LHCN-M2 treatment=DIFF_4d tissue=muscle cancer=unknown\ table wgEncodeRegDnaseUwLhcnm2Diff4dSignal\ track wgEncodeRegDnaseUwLhcnm2Diff4dWig\ type bigWig 0 44051.9\ gtexCovUterus Uterus bigWig Uterus 0 52 238 213 210 246 234 232 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1MA7W-1526-SM-DHXKS.Uterus.RNAseq.bw\ color 238,213,210\ longLabel Uterus\ parent gtexCov\ shortLabel Uterus\ track gtexCovUterus\ encTfChipPkENCFF613DTQ A549 YY1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in A549 from ENCODE 3 (ENCFF613DTQ) 0 53 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in A549 from ENCODE 3 (ENCFF613DTQ)\ parent encTfChipPk off\ shortLabel A549 YY1\ subGroups cellType=A549 factor=YY1\ track encTfChipPkENCFF613DTQ\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_tpm_fwd AorticSmsToIL1b_00hr00minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_forward 1 53 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep2%20%28LK32%29.CNhs13369.12750-136A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12750-136A5 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToIL1b_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_ctss_fwd AorticSmsToIL1b_00hr00minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_forward 0 53 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep2%20%28LK32%29.CNhs13369.12750-136A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12750-136A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5\ urlLabel FANTOM5 Details:\ chainHprcGCA_018469675v1 HG01258.pat chain GCA_018469675.1 HG01258.pat HG01258.alt.pat.f1_v2 (May 2021 GCA_018469675.1_HG01258.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 53 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01258.pat HG01258.alt.pat.f1_v2 (May 2021 GCA_018469675.1_HG01258.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469675.1\ parent hprcChainNetViewchain off\ priority 71\ shortLabel HG01258.pat\ subGroups view=chain sample=s071 population=amr subpop=clm hap=pat\ track chainHprcGCA_018469675v1\ type chain GCA_018469675.1\ wgEncodeRegDnaseUwHsmmtubePeak HSMMtube Pk narrowPeak HSMMtube skeletal muscle myotube DNaseI Peaks from ENCODE 1 53 85 255 204 170 255 229 1 0 0 regulation 1 color 85,255,204\ longLabel HSMMtube skeletal muscle myotube DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HSMMtube Pk\ subGroups view=a_Peaks cellType=HSMMtube treatment=n_a tissue=muscle cancer=normal\ track wgEncodeRegDnaseUwHsmmtubePeak\ wgEncodeRegDnaseUwHsmmtubeWig HSMMtube Sg bigWig 0 14719.7 HSMMtube skeletal muscle myotube DNaseI Signal from ENCODE 0 53 85 255 204 170 255 229 0 0 0 regulation 1 color 85,255,204\ longLabel HSMMtube skeletal muscle myotube DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.50509\ shortLabel HSMMtube Sg\ subGroups cellType=HSMMtube treatment=n_a tissue=muscle cancer=normal\ table wgEncodeRegDnaseUwHsmmtubeSignal\ track wgEncodeRegDnaseUwHsmmtubeWig\ type bigWig 0 14719.7\ gtexCovVagina Vagina bigWig Vagina 0 53 238 213 210 246 234 232 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1IDJU-1026-SM-AHZ2U.Vagina.RNAseq.bw\ color 238,213,210\ longLabel Vagina\ parent gtexCov\ shortLabel Vagina\ track gtexCovVagina\ encTfChipPkENCFF593ZJA A549 ZBTB33 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in A549 from ENCODE 3 (ENCFF593ZJA) 0 54 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in A549 from ENCODE 3 (ENCFF593ZJA)\ parent encTfChipPk off\ shortLabel A549 ZBTB33\ subGroups cellType=A549 factor=ZBTB33\ track encTfChipPkENCFF593ZJA\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_tpm_rev AorticSmsToIL1b_00hr00minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_reverse 1 54 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep2%20%28LK32%29.CNhs13369.12750-136A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12750-136A5 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToIL1b_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_ctss_rev AorticSmsToIL1b_00hr00minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_reverse 0 54 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep2%20%28LK32%29.CNhs13369.12750-136A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12750-136A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5\ urlLabel FANTOM5 Details:\ netHprcGCA_018469675v1 HG01258.pat netAlign GCA_018469675.1 chainHprcGCA_018469675v1 HG01258.pat HG01258.alt.pat.f1_v2 (May 2021 GCA_018469675.1_HG01258.alt.pat.f1_v2) HPRC project computed Chain Nets 1 54 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01258.pat HG01258.alt.pat.f1_v2 (May 2021 GCA_018469675.1_HG01258.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469675.1\ parent hprcChainNetViewnet off\ priority 71\ shortLabel HG01258.pat\ subGroups view=net sample=s071 population=amr subpop=clm hap=pat\ track netHprcGCA_018469675v1\ type netAlign GCA_018469675.1 chainHprcGCA_018469675v1\ wgEncodeRegDnaseUwHuvecPeak HUVEC Pk narrowPeak HUVEC umbilical vein endothelial cell DNaseI Peaks from ENCODE 1 54 85 255 215 170 255 235 1 0 0 regulation 1 color 85,255,215\ longLabel HUVEC umbilical vein endothelial cell DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak on\ shortLabel HUVEC Pk\ subGroups view=a_Peaks cellType=HUVEC treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHuvecPeak\ wgEncodeRegDnaseUwHuvecWig HUVEC Sg bigWig 0 6744.03 HUVEC umbilical vein endothelial cell DNaseI Signal from ENCODE 0 54 85 255 215 170 255 235 0 0 0 regulation 1 color 85,255,215\ longLabel HUVEC umbilical vein endothelial cell DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig on\ priority 1.52185\ shortLabel HUVEC Sg\ subGroups cellType=HUVEC treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHuvecSignal\ track wgEncodeRegDnaseUwHuvecWig\ type bigWig 0 6744.03\ gtexCovWholeBlood Whole Blood bigWig Whole Blood 0 54 255 0 255 255 127 255 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1LG7Z-0005-SM-DKPQ6.Whole_Blood.RNAseq.bw\ color 255,0,255\ longLabel Whole Blood\ parent gtexCov\ shortLabel Whole Blood\ track gtexCovWholeBlood\ encTfChipPkENCFF695QMG A673 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in A673 from ENCODE 3 (ENCFF695QMG) 0 55 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in A673 from ENCODE 3 (ENCFF695QMG)\ parent encTfChipPk off\ shortLabel A673 CTCF\ subGroups cellType=A673 factor=CTCF\ track encTfChipPkENCFF695QMG\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_tpm_fwd AorticSmsToIL1b_00hr00minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_forward 1 55 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep3%20%28LK33%29.CNhs13577.12848-137C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12848-137C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_ctss_fwd AorticSmsToIL1b_00hr00minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_forward 0 55 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep3%20%28LK33%29.CNhs13577.12848-137C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12848-137C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4\ urlLabel FANTOM5 Details:\ chainHprcGCA_018469695v1 HG01123.pat chain GCA_018469695.1 HG01123.pat HG01123.alt.pat.f1_v2.1 (May 2021 GCA_018469695.1_HG01123.alt.pat.f1_v2.1) HPRC project computed Chained Alignments 3 55 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01123.pat HG01123.alt.pat.f1_v2.1 (May 2021 GCA_018469695.1_HG01123.alt.pat.f1_v2.1) HPRC project computed Chained Alignments\ otherDb GCA_018469695.1\ parent hprcChainNetViewchain off\ priority 73\ shortLabel HG01123.pat\ subGroups view=chain sample=s073 population=amr subpop=clm hap=pat\ track chainHprcGCA_018469695v1\ type chain GCA_018469695.1\ wgEncodeRegDnaseUwHmveclblPeak HMVEC-LBl Pk narrowPeak HMVEC-LBl lung microvascular epithelium. blood DNaseI Peaks from ENCODE 1 55 85 255 220 170 255 237 1 0 0 regulation 1 color 85,255,220\ longLabel HMVEC-LBl lung microvascular epithelium. blood DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HMVEC-LBl Pk\ subGroups view=a_Peaks cellType=HMVEC-LBl treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmveclblPeak\ wgEncodeRegDnaseUwHmveclblWig HMVEC-LBl Sg bigWig 0 2898.86 HMVEC-LBl lung microvascular epithelium. blood DNaseI Signal from ENCODE 0 55 85 255 220 170 255 237 0 0 0 regulation 1 color 85,255,220\ longLabel HMVEC-LBl lung microvascular epithelium. blood DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.52972\ shortLabel HMVEC-LBl Sg\ subGroups cellType=HMVEC-LBl treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHmveclblSignal\ track wgEncodeRegDnaseUwHmveclblWig\ type bigWig 0 2898.86\ encTfChipPkENCFF807XMX A673 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in A673 from ENCODE 3 (ENCFF807XMX) 0 56 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in A673 from ENCODE 3 (ENCFF807XMX)\ parent encTfChipPk off\ shortLabel A673 EZH2\ subGroups cellType=A673 factor=EZH2\ track encTfChipPkENCFF807XMX\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_tpm_rev AorticSmsToIL1b_00hr00minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_reverse 1 56 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep3%20%28LK33%29.CNhs13577.12848-137C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12848-137C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_ctss_rev AorticSmsToIL1b_00hr00minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_reverse 0 56 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep3%20%28LK33%29.CNhs13577.12848-137C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12848-137C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4\ urlLabel FANTOM5 Details:\ netHprcGCA_018469695v1 HG01123.pat netAlign GCA_018469695.1 chainHprcGCA_018469695v1 HG01123.pat HG01123.alt.pat.f1_v2.1 (May 2021 GCA_018469695.1_HG01123.alt.pat.f1_v2.1) HPRC project computed Chain Nets 1 56 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01123.pat HG01123.alt.pat.f1_v2.1 (May 2021 GCA_018469695.1_HG01123.alt.pat.f1_v2.1) HPRC project computed Chain Nets\ otherDb GCA_018469695.1\ parent hprcChainNetViewnet off\ priority 73\ shortLabel HG01123.pat\ subGroups view=net sample=s073 population=amr subpop=clm hap=pat\ track netHprcGCA_018469695v1\ type netAlign GCA_018469695.1 chainHprcGCA_018469695v1\ wgEncodeRegDnaseUwHmvecdbladPeak HMVEC-dBl-Ad Pk narrowPeak HMVEC-dBl-Ad dermal MV endothelial cell, blood DNaseI Peaks from ENCODE 1 56 85 255 224 170 255 239 1 0 0 regulation 1 color 85,255,224\ longLabel HMVEC-dBl-Ad dermal MV endothelial cell, blood DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HMVEC-dBl-Ad Pk\ subGroups view=a_Peaks cellType=HMVEC-dBl-Ad treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdbladPeak\ wgEncodeRegDnaseUwHmvecdbladWig HMVEC-dBl-Ad Sg bigWig 0 6571.28 HMVEC-dBl-Ad dermal MV endothelial cell, blood DNaseI Signal from ENCODE 0 56 85 255 224 170 255 239 0 0 0 regulation 1 color 85,255,224\ longLabel HMVEC-dBl-Ad dermal MV endothelial cell, blood DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.53388\ shortLabel HMVEC-dBl-Ad Sg\ subGroups cellType=HMVEC-dBl-Ad treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHmvecdbladSignal\ track wgEncodeRegDnaseUwHmvecdbladWig\ type bigWig 0 6571.28\ encTfChipPkENCFF652LEH AG04449 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in AG04449 from ENCODE 3 (ENCFF652LEH) 0 57 152 255 85 203 255 170 0 0 0 regulation 1 color 152,255,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in AG04449 from ENCODE 3 (ENCFF652LEH)\ parent encTfChipPk off\ shortLabel AG04449 CTCF\ subGroups cellType=AG04449 factor=CTCF\ track encTfChipPkENCFF652LEH\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_tpm_fwd AorticSmsToIL1b_00hr15minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_forward 1 57 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep1%20%28LK34%29.CNhs13350.12653-134H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12653-134H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_ctss_fwd AorticSmsToIL1b_00hr15minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_forward 0 57 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep1%20%28LK34%29.CNhs13350.12653-134H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12653-134H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7\ urlLabel FANTOM5 Details:\ chainHprcGCA_018469705v1 HG01361.pat chain GCA_018469705.1 HG01361.pat HG01361.alt.pat.f1_v2 (May 2021 GCA_018469705.1_HG01361.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 57 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01361.pat HG01361.alt.pat.f1_v2 (May 2021 GCA_018469705.1_HG01361.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469705.1\ parent hprcChainNetViewchain off\ priority 74\ shortLabel HG01361.pat\ subGroups view=chain sample=s074 population=amr subpop=clm hap=pat\ track chainHprcGCA_018469705v1\ type chain GCA_018469705.1\ wgEncodeRegDnaseUwHmvecdlyneoPeak HMVEC-dLy-Neo Pk narrowPeak HMVEC-dLy-Neo dermal MV endothelial cell, neonate lymph DNaseI Peaks from ENCODE 1 57 85 255 226 170 255 240 1 0 0 regulation 1 color 85,255,226\ longLabel HMVEC-dLy-Neo dermal MV endothelial cell, neonate lymph DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HMVEC-dLy-Neo Pk\ subGroups view=a_Peaks cellType=HMVEC-dLy-Neo treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdlyneoPeak\ wgEncodeRegDnaseUwHmvecdlyneoWig HMVEC-dLy-Neo Sg bigWig 0 9237.62 HMVEC-dLy-Neo dermal MV endo cell, neonate lymph DNaseI Signal from ENCODE 0 57 85 255 226 170 255 240 0 0 0 regulation 1 color 85,255,226\ longLabel HMVEC-dLy-Neo dermal MV endo cell, neonate lymph DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.53734\ shortLabel HMVEC-dLy-Neo Sg\ subGroups cellType=HMVEC-dLy-Neo treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHmvecdlyneoSignal\ track wgEncodeRegDnaseUwHmvecdlyneoWig\ type bigWig 0 9237.62\ encTfChipPkENCFF788LNG AG04450 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in AG04450 from ENCODE 3 (ENCFF788LNG) 0 58 144 255 85 199 255 170 0 0 0 regulation 1 color 144,255,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in AG04450 from ENCODE 3 (ENCFF788LNG)\ parent encTfChipPk off\ shortLabel AG04450 CTCF\ subGroups cellType=AG04450 factor=CTCF\ track encTfChipPkENCFF788LNG\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_tpm_rev AorticSmsToIL1b_00hr15minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_reverse 1 58 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep1%20%28LK34%29.CNhs13350.12653-134H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12653-134H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_ctss_rev AorticSmsToIL1b_00hr15minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_reverse 0 58 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep1%20%28LK34%29.CNhs13350.12653-134H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12653-134H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7\ urlLabel FANTOM5 Details:\ netHprcGCA_018469705v1 HG01361.pat netAlign GCA_018469705.1 chainHprcGCA_018469705v1 HG01361.pat HG01361.alt.pat.f1_v2 (May 2021 GCA_018469705.1_HG01361.alt.pat.f1_v2) HPRC project computed Chain Nets 1 58 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01361.pat HG01361.alt.pat.f1_v2 (May 2021 GCA_018469705.1_HG01361.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469705.1\ parent hprcChainNetViewnet off\ priority 74\ shortLabel HG01361.pat\ subGroups view=net sample=s074 population=amr subpop=clm hap=pat\ track netHprcGCA_018469705v1\ type netAlign GCA_018469705.1 chainHprcGCA_018469705v1\ wgEncodeRegDnaseUwHmvecdblneoPeak HMVEC-dBl-Neo Pk narrowPeak HMVEC-dBl-Neo dermal MV endothelial cell, neonate blood DNaseI Peaks from ENCODE 1 58 85 255 229 170 255 242 1 0 0 regulation 1 color 85,255,229\ longLabel HMVEC-dBl-Neo dermal MV endothelial cell, neonate blood DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HMVEC-dBl-Neo Pk\ subGroups view=a_Peaks cellType=HMVEC-dBl-Neo treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdblneoPeak\ wgEncodeRegDnaseUwHmvecdblneoWig HMVEC-dBl-Neo Sg bigWig 0 6275.08 HMVEC-dBl-Neo dermal MV endo cell, neonate blood DNaseI Signal from ENCODE 0 58 85 255 229 170 255 242 0 0 0 regulation 1 color 85,255,229\ longLabel HMVEC-dBl-Neo dermal MV endo cell, neonate blood DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.54191\ shortLabel HMVEC-dBl-Neo Sg\ subGroups cellType=HMVEC-dBl-Neo treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHmvecdblneoSignal\ track wgEncodeRegDnaseUwHmvecdblneoWig\ type bigWig 0 6275.08\ encTfChipPkENCFF826NCK AG09309 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in AG09309 from ENCODE 3 (ENCFF826NCK) 0 59 255 186 85 255 220 170 0 0 0 regulation 1 color 255,186,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in AG09309 from ENCODE 3 (ENCFF826NCK)\ parent encTfChipPk off\ shortLabel AG09309 CTCF\ subGroups cellType=AG09309 factor=CTCF\ track encTfChipPkENCFF826NCK\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_tpm_fwd AorticSmsToIL1b_00hr15minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_forward 1 59 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep2%20%28LK35%29.CNhs13370.12751-136A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12751-136A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_ctss_fwd AorticSmsToIL1b_00hr15minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_forward 0 59 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep2%20%28LK35%29.CNhs13370.12751-136A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12751-136A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6\ urlLabel FANTOM5 Details:\ chainHprcGCA_018469965v1 HG01358.pat chain GCA_018469965.1 HG01358.pat HG01358.alt.pat.f1_v2.1 (May 2021 GCA_018469965.1_HG01358.alt.pat.f1_v2.1) HPRC project computed Chained Alignments 3 59 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01358.pat HG01358.alt.pat.f1_v2.1 (May 2021 GCA_018469965.1_HG01358.alt.pat.f1_v2.1) HPRC project computed Chained Alignments\ otherDb GCA_018469965.1\ parent hprcChainNetViewchain off\ priority 76\ shortLabel HG01358.pat\ subGroups view=chain sample=s076 population=amr subpop=clm hap=pat\ track chainHprcGCA_018469965v1\ type chain GCA_018469965.1\ wgEncodeRegDnaseUwHrgecPeak HRGEC Pk narrowPeak HRGEC renal glomerular endothelial cell DNaseI Peaks from ENCODE 1 59 85 255 232 170 255 243 1 0 0 regulation 1 color 85,255,232\ longLabel HRGEC renal glomerular endothelial cell DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HRGEC Pk\ subGroups view=a_Peaks cellType=HRGEC treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwHrgecPeak\ wgEncodeRegDnaseUwHrgecWig HRGEC Sg bigWig 0 7095.64 HRGEC renal glomerular endothelial cell DNaseI Signal from ENCODE 0 59 85 255 232 170 255 243 0 0 0 regulation 1 color 85,255,232\ longLabel HRGEC renal glomerular endothelial cell DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.54737\ shortLabel HRGEC Sg\ subGroups cellType=HRGEC treatment=n_a tissue=kidney cancer=normal\ table wgEncodeRegDnaseUwHrgecSignal\ track wgEncodeRegDnaseUwHrgecWig\ type bigWig 0 7095.64\ encTfChipPkENCFF119XBW AG09319 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in AG09319 from ENCODE 3 (ENCFF119XBW) 0 60 255 221 85 255 238 170 0 0 0 regulation 1 color 255,221,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in AG09319 from ENCODE 3 (ENCFF119XBW)\ parent encTfChipPk off\ shortLabel AG09319 CTCF\ subGroups cellType=AG09319 factor=CTCF\ track encTfChipPkENCFF119XBW\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_tpm_rev AorticSmsToIL1b_00hr15minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_reverse 1 60 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep2%20%28LK35%29.CNhs13370.12751-136A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12751-136A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_ctss_rev AorticSmsToIL1b_00hr15minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_reverse 0 60 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep2%20%28LK35%29.CNhs13370.12751-136A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12751-136A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6\ urlLabel FANTOM5 Details:\ netHprcGCA_018469965v1 HG01358.pat netAlign GCA_018469965.1 chainHprcGCA_018469965v1 HG01358.pat HG01358.alt.pat.f1_v2.1 (May 2021 GCA_018469965.1_HG01358.alt.pat.f1_v2.1) HPRC project computed Chain Nets 1 60 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01358.pat HG01358.alt.pat.f1_v2.1 (May 2021 GCA_018469965.1_HG01358.alt.pat.f1_v2.1) HPRC project computed Chain Nets\ otherDb GCA_018469965.1\ parent hprcChainNetViewnet off\ priority 76\ shortLabel HG01358.pat\ subGroups view=net sample=s076 population=amr subpop=clm hap=pat\ track netHprcGCA_018469965v1\ type netAlign GCA_018469965.1 chainHprcGCA_018469965v1\ wgEncodeRegDnaseUwHmvecllyPeak HMVEC-LLy Pk narrowPeak HMVEC-LLy lung microvascular endothelial cell, lymph DNaseI Peaks from ENCODE 1 60 85 255 243 170 255 249 1 0 0 regulation 1 color 85,255,243\ longLabel HMVEC-LLy lung microvascular endothelial cell, lymph DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HMVEC-LLy Pk\ subGroups view=a_Peaks cellType=HMVEC-LLy treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecllyPeak\ wgEncodeRegDnaseUwHmvecllyWig HMVEC-LLy Sg bigWig 0 21274 HMVEC-LLy lung microvascular endothelial cell, lymph DNaseI Signal from ENCODE 0 60 85 255 243 170 255 249 0 0 0 regulation 1 color 85,255,243\ longLabel HMVEC-LLy lung microvascular endothelial cell, lymph DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.56304\ shortLabel HMVEC-LLy Sg\ subGroups cellType=HMVEC-LLy treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHmvecllySignal\ track wgEncodeRegDnaseUwHmvecllyWig\ type bigWig 0 21274\ encTfChipPkENCFF100IYW AG10803 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in AG10803 from ENCODE 3 (ENCFF100IYW) 0 61 220 255 85 237 255 170 0 0 0 regulation 1 color 220,255,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in AG10803 from ENCODE 3 (ENCFF100IYW)\ parent encTfChipPk off\ shortLabel AG10803 CTCF\ subGroups cellType=AG10803 factor=CTCF\ track encTfChipPkENCFF100IYW\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_tpm_fwd AorticSmsToIL1b_00hr15minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_forward 1 61 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep3%20%28LK36%29.CNhs13578.12849-137C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12849-137C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_ctss_fwd AorticSmsToIL1b_00hr15minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_forward 0 61 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep3%20%28LK36%29.CNhs13578.12849-137C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12849-137C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5\ urlLabel FANTOM5 Details:\ chainHprcGCA_018469425v1 HG03516.mat chain GCA_018469425.1 HG03516.mat HG03516.pri.mat.f1_v2 (May 2021 GCA_018469425.1_HG03516.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 61 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03516.mat HG03516.pri.mat.f1_v2 (May 2021 GCA_018469425.1_HG03516.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469425.1\ parent hprcChainNetViewchain off\ priority 44\ shortLabel HG03516.mat\ subGroups view=chain sample=s044 population=afr subpop=esn hap=mat\ track chainHprcGCA_018469425v1\ type chain GCA_018469425.1\ wgEncodeRegDnaseUwHmvecdneoPeak HMVEC-dNeo Pk narrowPeak HMVEC-dNeo dermal MV endothelial cell, neonate DNaseI Peaks from ENCODE 1 61 85 255 244 170 255 249 1 0 0 regulation 1 color 85,255,244\ longLabel HMVEC-dNeo dermal MV endothelial cell, neonate DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HMVEC-dNeo Pk\ subGroups view=a_Peaks cellType=HMVEC-dNeo treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdneoPeak\ wgEncodeRegDnaseUwHmvecdneoWig HMVEC-dNeo Sg bigWig 0 16586 HMVEC-dNeo dermal MV endothelial cell, neonate DNaseI Signal from ENCODE 0 61 85 255 244 170 255 249 0 0 0 regulation 1 color 85,255,244\ longLabel HMVEC-dNeo dermal MV endothelial cell, neonate DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.56474\ shortLabel HMVEC-dNeo Sg\ subGroups cellType=HMVEC-dNeo treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHmvecdneoSignal\ track wgEncodeRegDnaseUwHmvecdneoWig\ type bigWig 0 16586\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_tpm_rev AorticSmsToIL1b_00hr15minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_reverse 1 62 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep3%20%28LK36%29.CNhs13578.12849-137C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12849-137C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_ctss_rev AorticSmsToIL1b_00hr15minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_reverse 0 62 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep3%20%28LK36%29.CNhs13578.12849-137C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12849-137C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF594OZI BE2C CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in BE2C from ENCODE 3 (ENCFF594OZI) 0 62 237 85 255 246 170 255 0 0 0 regulation 1 color 237,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in BE2C from ENCODE 3 (ENCFF594OZI)\ parent encTfChipPk off\ shortLabel BE2C CTCF\ subGroups cellType=BE2C factor=CTCF\ track encTfChipPkENCFF594OZI\ netHprcGCA_018469425v1 HG03516.mat netAlign GCA_018469425.1 chainHprcGCA_018469425v1 HG03516.mat HG03516.pri.mat.f1_v2 (May 2021 GCA_018469425.1_HG03516.pri.mat.f1_v2) HPRC project computed Chain Nets 1 62 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03516.mat HG03516.pri.mat.f1_v2 (May 2021 GCA_018469425.1_HG03516.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469425.1\ parent hprcChainNetViewnet off\ priority 44\ shortLabel HG03516.mat\ subGroups view=net sample=s044 population=afr subpop=esn hap=mat\ track netHprcGCA_018469425v1\ type netAlign GCA_018469425.1 chainHprcGCA_018469425v1\ wgEncodeRegDnaseUwHmvecdadPeak HMVEC-dAd Pk narrowPeak HMVEC-dAd dermal microvascular endothelial cell DNaseI Peaks from ENCODE 1 62 85 255 246 170 255 250 1 0 0 regulation 1 color 85,255,246\ longLabel HMVEC-dAd dermal microvascular endothelial cell DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HMVEC-dAd Pk\ subGroups view=a_Peaks cellType=HMVEC-dAd treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdadPeak\ wgEncodeRegDnaseUwHmvecdadWig HMVEC-dAd Sg bigWig 0 7923.4 HMVEC-dAd dermal microvascular endothelial cell DNaseI Signal from ENCODE 0 62 85 255 246 170 255 250 0 0 0 regulation 1 color 85,255,246\ longLabel HMVEC-dAd dermal microvascular endothelial cell DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.56686\ shortLabel HMVEC-dAd Sg\ subGroups cellType=HMVEC-dAd treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHmvecdadSignal\ track wgEncodeRegDnaseUwHmvecdadWig\ type bigWig 0 7923.4\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_tpm_fwd AorticSmsToIL1b_00hr30minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_forward 1 63 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep1%20%28LK37%29.CNhs13351.12654-134H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12654-134H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_ctss_fwd AorticSmsToIL1b_00hr30minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_forward 0 63 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep1%20%28LK37%29.CNhs13351.12654-134H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12654-134H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF704JHR BJ CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in BJ from ENCODE 3 (ENCFF704JHR) 0 63 255 184 85 255 219 170 0 0 0 regulation 1 color 255,184,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in BJ from ENCODE 3 (ENCFF704JHR)\ parent encTfChipPk off\ shortLabel BJ CTCF\ subGroups cellType=BJ factor=CTCF\ track encTfChipPkENCFF704JHR\ chainHprcGCA_018469415v1 HG03516.pat chain GCA_018469415.1 HG03516.pat HG03516.alt.pat.f1_v2 (May 2021 GCA_018469415.1_HG03516.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 63 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03516.pat HG03516.alt.pat.f1_v2 (May 2021 GCA_018469415.1_HG03516.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469415.1\ parent hprcChainNetViewchain off\ priority 43\ shortLabel HG03516.pat\ subGroups view=chain sample=s043 population=afr subpop=esn hap=pat\ track chainHprcGCA_018469415v1\ type chain GCA_018469415.1\ wgEncodeRegDnaseUwHrcepicPeak HRCEpiC Pk narrowPeak HRCEpiC renal cortical epithelium DNaseI Peaks from ENCODE 1 63 85 251 255 170 253 255 1 0 0 regulation 1 color 85,251,255\ longLabel HRCEpiC renal cortical epithelium DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HRCEpiC Pk\ subGroups view=a_Peaks cellType=HRCEpiC treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwHrcepicPeak\ wgEncodeRegDnaseUwHrcepicWig HRCEpiC Sg bigWig 0 4920.93 HRCEpiC renal cortical epithelium DNaseI Signal from ENCODE 0 63 85 251 255 170 253 255 0 0 0 regulation 1 color 85,251,255\ longLabel HRCEpiC renal cortical epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.58591\ shortLabel HRCEpiC Sg\ subGroups cellType=HRCEpiC treatment=n_a tissue=kidney cancer=normal\ table wgEncodeRegDnaseUwHrcepicSignal\ track wgEncodeRegDnaseUwHrcepicWig\ type bigWig 0 4920.93\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_tpm_rev AorticSmsToIL1b_00hr30minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_reverse 1 64 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep1%20%28LK37%29.CNhs13351.12654-134H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12654-134H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_ctss_rev AorticSmsToIL1b_00hr30minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_reverse 0 64 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep1%20%28LK37%29.CNhs13351.12654-134H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12654-134H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF910TER B_cell CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in B_cell from ENCODE 3 (ENCFF910TER) 0 64 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in B_cell from ENCODE 3 (ENCFF910TER)\ parent encTfChipPk off\ shortLabel B_cell CTCF\ subGroups cellType=B_cell factor=CTCF\ track encTfChipPkENCFF910TER\ netHprcGCA_018469415v1 HG03516.pat netAlign GCA_018469415.1 chainHprcGCA_018469415v1 HG03516.pat HG03516.alt.pat.f1_v2 (May 2021 GCA_018469415.1_HG03516.alt.pat.f1_v2) HPRC project computed Chain Nets 1 64 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03516.pat HG03516.alt.pat.f1_v2 (May 2021 GCA_018469415.1_HG03516.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469415.1\ parent hprcChainNetViewnet off\ priority 43\ shortLabel HG03516.pat\ subGroups view=net sample=s043 population=afr subpop=esn hap=pat\ track netHprcGCA_018469415v1\ type netAlign GCA_018469415.1 chainHprcGCA_018469415v1\ wgEncodeRegDnaseUwHrePeak HRE Pk narrowPeak HRE renal epithelium DNaseI Peaks from ENCODE 1 64 85 248 255 170 251 255 1 0 0 regulation 1 color 85,248,255\ longLabel HRE renal epithelium DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HRE Pk\ subGroups view=a_Peaks cellType=HRE treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwHrePeak\ wgEncodeRegDnaseUwHreWig HRE Sg bigWig 0 6938.49 HRE renal epithelium DNaseI Signal from ENCODE 0 64 85 248 255 170 251 255 0 0 0 regulation 1 color 85,248,255\ longLabel HRE renal epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.59019\ shortLabel HRE Sg\ subGroups cellType=HRE treatment=n_a tissue=kidney cancer=normal\ table wgEncodeRegDnaseUwHreSignal\ track wgEncodeRegDnaseUwHreWig\ type bigWig 0 6938.49\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_tpm_fwd AorticSmsToIL1b_00hr30minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_forward 1 65 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep2%20%28LK38%29.CNhs13371.12752-136A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12752-136A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_ctss_fwd AorticSmsToIL1b_00hr30minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_forward 0 65 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep2%20%28LK38%29.CNhs13371.12752-136A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12752-136A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF675JFN C4-2B CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in C4-2B from ENCODE 3 (ENCFF675JFN) 0 65 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in C4-2B from ENCODE 3 (ENCFF675JFN)\ parent encTfChipPk off\ shortLabel C4-2B CTCF\ subGroups cellType=C4-2B factor=CTCF\ track encTfChipPkENCFF675JFN\ chainHprcGCA_018469875v1 HG02622.mat chain GCA_018469875.1 HG02622.mat HG02622.pri.mat.f1_v2 (May 2021 GCA_018469875.1_HG02622.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 65 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02622.mat HG02622.pri.mat.f1_v2 (May 2021 GCA_018469875.1_HG02622.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469875.1\ parent hprcChainNetViewchain\ priority 1\ shortLabel HG02622.mat\ subGroups view=chain sample=s001 population=afr subpop=gwd hap=mat\ track chainHprcGCA_018469875v1\ type chain GCA_018469875.1\ wgEncodeRegDnaseUwNhekPeak NHEK Pk narrowPeak NHEK epidermal keratinocyte DNaseI Peaks from ENCODE 1 65 85 238 255 170 246 255 1 0 0 regulation 1 color 85,238,255\ longLabel NHEK epidermal keratinocyte DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak on\ shortLabel NHEK Pk\ subGroups view=a_Peaks cellType=NHEK treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwNhekPeak\ wgEncodeRegDnaseUwNhekWig NHEK Sg bigWig 0 9597.75 NHEK epidermal keratinocyte DNaseI Signal from ENCODE 0 65 85 238 255 170 246 255 0 0 0 regulation 1 color 85,238,255\ longLabel NHEK epidermal keratinocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig on\ priority 1.60559\ shortLabel NHEK Sg\ subGroups cellType=NHEK treatment=n_a tissue=skin cancer=normal\ table wgEncodeRegDnaseUwNhekSignal\ track wgEncodeRegDnaseUwNhekWig\ type bigWig 0 9597.75\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_tpm_rev AorticSmsToIL1b_00hr30minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_reverse 1 66 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep2%20%28LK38%29.CNhs13371.12752-136A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12752-136A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_ctss_rev AorticSmsToIL1b_00hr30minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_reverse 0 66 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep2%20%28LK38%29.CNhs13371.12752-136A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12752-136A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF856AUX C4-2B ZFX narrowPeak Transcription Factor ChIP-seq Peaks of ZFX in C4-2B from ENCODE 3 (ENCFF856AUX) 0 66 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZFX in C4-2B from ENCODE 3 (ENCFF856AUX)\ parent encTfChipPk off\ shortLabel C4-2B ZFX\ subGroups cellType=C4-2B factor=ZFX\ track encTfChipPkENCFF856AUX\ netHprcGCA_018469875v1 HG02622.mat netAlign GCA_018469875.1 chainHprcGCA_018469875v1 HG02622.mat HG02622.pri.mat.f1_v2 (May 2021 GCA_018469875.1_HG02622.pri.mat.f1_v2) HPRC project computed Chain Nets 1 66 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02622.mat HG02622.pri.mat.f1_v2 (May 2021 GCA_018469875.1_HG02622.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469875.1\ parent hprcChainNetViewnet\ priority 1\ shortLabel HG02622.mat\ subGroups view=net sample=s001 population=afr subpop=gwd hap=mat\ track netHprcGCA_018469875v1\ type netAlign GCA_018469875.1 chainHprcGCA_018469875v1\ wgEncodeRegDnaseUwSaecPeak SAEC Pk narrowPeak SAEC small airway epithelium DNaseI Peaks from ENCODE 1 66 85 231 255 170 243 255 1 0 0 regulation 1 color 85,231,255\ longLabel SAEC small airway epithelium DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel SAEC Pk\ subGroups view=a_Peaks cellType=SAEC treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwSaecPeak\ wgEncodeRegDnaseUwSaecWig SAEC Sg bigWig 0 4884.78 SAEC small airway epithelium DNaseI Signal from ENCODE 0 66 85 231 255 170 243 255 0 0 0 regulation 1 color 85,231,255\ longLabel SAEC small airway epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.61604\ shortLabel SAEC Sg\ subGroups cellType=SAEC treatment=n_a tissue=lung cancer=normal\ table wgEncodeRegDnaseUwSaecSignal\ track wgEncodeRegDnaseUwSaecWig\ type bigWig 0 4884.78\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_tpm_fwd AorticSmsToIL1b_00hr30minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_forward 1 67 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep3%20%28LK39%29.CNhs13579.12850-137C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12850-137C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_ctss_fwd AorticSmsToIL1b_00hr30minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_forward 0 67 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep3%20%28LK39%29.CNhs13579.12850-137C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12850-137C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF300XXC CD14+monocyte CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in CD14-positive_monocyte from ENCODE 3 (ENCFF300XXC) 0 67 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in CD14-positive_monocyte from ENCODE 3 (ENCFF300XXC)\ parent encTfChipPk off\ shortLabel CD14+monocyte CTCF\ subGroups cellType=CD14-positive_monocyte factor=CTCF\ track encTfChipPkENCFF300XXC\ chainHprcGCA_018469935v1 HG02717.mat chain GCA_018469935.1 HG02717.mat HG02717.pri.mat.f1_v2 (May 2021 GCA_018469935.1_HG02717.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 67 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02717.mat HG02717.pri.mat.f1_v2 (May 2021 GCA_018469935.1_HG02717.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469935.1\ parent hprcChainNetViewchain off\ priority 3\ shortLabel HG02717.mat\ subGroups view=chain sample=s003 population=afr subpop=gwd hap=mat\ track chainHprcGCA_018469935v1\ type chain GCA_018469935.1\ wgEncodeRegDnaseUwPrecPeak PrEC Pk narrowPeak PrEC prostate epithelium DNaseI Peaks from ENCODE 1 67 85 226 255 170 240 255 1 0 0 regulation 1 color 85,226,255\ longLabel PrEC prostate epithelium DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel PrEC Pk\ subGroups view=a_Peaks cellType=PrEC treatment=n_a tissue=prostate cancer=normal\ track wgEncodeRegDnaseUwPrecPeak\ wgEncodeRegDnaseUwPrecWig PrEC Sg bigWig 0 4302.39 PrEC prostate epithelium DNaseI Signal from ENCODE 0 67 85 226 255 170 240 255 0 0 0 regulation 1 color 85,226,255\ longLabel PrEC prostate epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.62238\ shortLabel PrEC Sg\ subGroups cellType=PrEC treatment=n_a tissue=prostate cancer=normal\ table wgEncodeRegDnaseUwPrecSignal\ track wgEncodeRegDnaseUwPrecWig\ type bigWig 0 4302.39\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_tpm_rev AorticSmsToIL1b_00hr30minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_reverse 1 68 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep3%20%28LK39%29.CNhs13579.12850-137C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12850-137C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_ctss_rev AorticSmsToIL1b_00hr30minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_reverse 0 68 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep3%20%28LK39%29.CNhs13579.12850-137C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12850-137C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF990ZZT Caco-2 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Caco-2 from ENCODE 3 (ENCFF990ZZT) 0 68 85 193 255 170 224 255 0 0 0 regulation 1 color 85,193,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in Caco-2 from ENCODE 3 (ENCFF990ZZT)\ parent encTfChipPk off\ shortLabel Caco-2 CTCF\ subGroups cellType=Caco-2 factor=CTCF\ track encTfChipPkENCFF990ZZT\ wgEncodeRegDnaseUwHeepicPeak HEEpiC Pk narrowPeak HEEpiC esophageal epithelium DNaseI Peaks from ENCODE 1 68 85 220 255 170 237 255 1 0 0 regulation 1 color 85,220,255\ longLabel HEEpiC esophageal epithelium DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HEEpiC Pk\ subGroups view=a_Peaks cellType=HEEpiC treatment=n_a tissue=esophagus cancer=normal\ track wgEncodeRegDnaseUwHeepicPeak\ wgEncodeRegDnaseUwHeepicWig HEEpiC Sg bigWig 0 20601.1 HEEpiC esophageal epithelium DNaseI Signal from ENCODE 0 68 85 220 255 170 237 255 0 0 0 regulation 1 color 85,220,255\ longLabel HEEpiC esophageal epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.632\ shortLabel HEEpiC Sg\ subGroups cellType=HEEpiC treatment=n_a tissue=esophagus cancer=normal\ table wgEncodeRegDnaseUwHeepicSignal\ track wgEncodeRegDnaseUwHeepicWig\ type bigWig 0 20601.1\ netHprcGCA_018469935v1 HG02717.mat netAlign GCA_018469935.1 chainHprcGCA_018469935v1 HG02717.mat HG02717.pri.mat.f1_v2 (May 2021 GCA_018469935.1_HG02717.pri.mat.f1_v2) HPRC project computed Chain Nets 1 68 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02717.mat HG02717.pri.mat.f1_v2 (May 2021 GCA_018469935.1_HG02717.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469935.1\ parent hprcChainNetViewnet off\ priority 3\ shortLabel HG02717.mat\ subGroups view=net sample=s003 population=afr subpop=gwd hap=mat\ track netHprcGCA_018469935v1\ type netAlign GCA_018469935.1 chainHprcGCA_018469935v1\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_tpm_fwd AorticSmsToIL1b_00hr45minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_forward 1 69 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep1%20%28LK40%29.CNhs13352.12655-134H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12655-134H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_ctss_fwd AorticSmsToIL1b_00hr45minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_forward 0 69 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep1%20%28LK40%29.CNhs13352.12655-134H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12655-134H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF837RIT DOHH2 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in DOHH2 from ENCODE 3 (ENCFF837RIT) 0 69 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in DOHH2 from ENCODE 3 (ENCFF837RIT)\ parent encTfChipPk off\ shortLabel DOHH2 CTCF\ subGroups cellType=DOHH2 factor=CTCF\ track encTfChipPkENCFF837RIT\ wgEncodeRegDnaseUwGm06990Peak GM06990 Pk narrowPeak GM06990 B-lymphocyte, lymphoblastoid cell line DNaseI Peaks from ENCODE 1 69 85 205 255 170 230 255 1 0 0 regulation 1 color 85,205,255\ longLabel GM06990 B-lymphocyte, lymphoblastoid cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel GM06990 Pk\ subGroups view=a_Peaks cellType=GM06990 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwGm06990Peak\ wgEncodeRegDnaseUwGm06990Wig GM06990 Sg bigWig 0 14706.5 GM06990 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE 0 69 85 205 255 170 230 255 0 0 0 regulation 1 color 85,205,255\ longLabel GM06990 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.65365\ shortLabel GM06990 Sg\ subGroups cellType=GM06990 treatment=n_a tissue=blood cancer=unknown\ table wgEncodeRegDnaseUwGm06990Signal\ track wgEncodeRegDnaseUwGm06990Wig\ type bigWig 0 14706.5\ chainHprcGCA_018469955v1 HG02630.mat chain GCA_018469955.1 HG02630.mat HG02630.pri.mat.f1_v2 (May 2021 GCA_018469955.1_HG02630.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 69 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02630.mat HG02630.pri.mat.f1_v2 (May 2021 GCA_018469955.1_HG02630.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469955.1\ parent hprcChainNetViewchain off\ priority 5\ shortLabel HG02630.mat\ subGroups view=chain sample=s005 population=afr subpop=gwd hap=mat\ track chainHprcGCA_018469955v1\ type chain GCA_018469955.1\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_tpm_rev AorticSmsToIL1b_00hr45minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_reverse 1 70 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep1%20%28LK40%29.CNhs13352.12655-134H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12655-134H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_ctss_rev AorticSmsToIL1b_00hr45minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_reverse 0 70 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep1%20%28LK40%29.CNhs13352.12655-134H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12655-134H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF897RQN GM06990 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM06990 from ENCODE 3 (ENCFF897RQN) 0 70 85 205 255 170 230 255 0 0 0 regulation 1 color 85,205,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM06990 from ENCODE 3 (ENCFF897RQN)\ parent encTfChipPk off\ shortLabel GM06990 CTCF\ subGroups cellType=GM06990 factor=CTCF\ track encTfChipPkENCFF897RQN\ wgEncodeRegDnaseUwHepg2Peak HepG2 Pk narrowPeak HepG2 hepatocellular carcinoma cell line DNaseI Peaks from ENCODE 1 70 85 198 255 170 226 255 1 0 0 regulation 1 color 85,198,255\ longLabel HepG2 hepatocellular carcinoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak on\ shortLabel HepG2 Pk\ subGroups view=a_Peaks cellType=HepG2 treatment=n_a tissue=liver cancer=cancer\ track wgEncodeRegDnaseUwHepg2Peak\ wgEncodeRegDnaseUwHepg2Wig HepG2 Sg bigWig 0 4511.03 HepG2 hepatocellular carcinoma cell line DNaseI Signal from ENCODE 0 70 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel HepG2 hepatocellular carcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig on\ priority 1.66426\ shortLabel HepG2 Sg\ subGroups cellType=HepG2 treatment=n_a tissue=liver cancer=cancer\ table wgEncodeRegDnaseUwHepg2Signal\ track wgEncodeRegDnaseUwHepg2Wig\ type bigWig 0 4511.03\ netHprcGCA_018469955v1 HG02630.mat netAlign GCA_018469955.1 chainHprcGCA_018469955v1 HG02630.mat HG02630.pri.mat.f1_v2 (May 2021 GCA_018469955.1_HG02630.pri.mat.f1_v2) HPRC project computed Chain Nets 1 70 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02630.mat HG02630.pri.mat.f1_v2 (May 2021 GCA_018469955.1_HG02630.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469955.1\ parent hprcChainNetViewnet off\ priority 5\ shortLabel HG02630.mat\ subGroups view=net sample=s005 population=afr subpop=gwd hap=mat\ track netHprcGCA_018469955v1\ type netAlign GCA_018469955.1 chainHprcGCA_018469955v1\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_tpm_fwd AorticSmsToIL1b_00hr45minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_forward 1 71 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep2%20%28LK41%29.CNhs13372.12753-136A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12753-136A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_ctss_fwd AorticSmsToIL1b_00hr45minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_forward 0 71 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep2%20%28LK41%29.CNhs13372.12753-136A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12753-136A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwCaco2Peak Caco-2 Pk narrowPeak Caco-2 colon adenocarcinoma cell line DNaseI Peaks from ENCODE 1 71 85 193 255 170 224 255 1 0 0 regulation 1 color 85,193,255\ longLabel Caco-2 colon adenocarcinoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel Caco-2 Pk\ subGroups view=a_Peaks cellType=Caco-2 treatment=n_a tissue=colon cancer=cancer\ track wgEncodeRegDnaseUwCaco2Peak\ wgEncodeRegDnaseUwCaco2Wig Caco-2 Sg bigWig 0 4903.16 Caco-2 colon adenocarcinoma cell line DNaseI Signal from ENCODE 0 71 85 193 255 170 224 255 0 0 0 regulation 1 color 85,193,255\ longLabel Caco-2 colon adenocarcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.67125\ shortLabel Caco-2 Sg\ subGroups cellType=Caco-2 treatment=n_a tissue=colon cancer=cancer\ table wgEncodeRegDnaseUwCaco2Signal\ track wgEncodeRegDnaseUwCaco2Wig\ type bigWig 0 4903.16\ encTfChipPkENCFF329TZO GM08714 ZNF274 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF274 in GM08714 from ENCODE 3 (ENCFF329TZO) 0 71 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF274 in GM08714 from ENCODE 3 (ENCFF329TZO)\ parent encTfChipPk off\ shortLabel GM08714 ZNF274\ subGroups cellType=GM08714 factor=ZNF274\ track encTfChipPkENCFF329TZO\ chainHprcGCA_018470445v1 HG02572.mat chain GCA_018470445.1 HG02572.mat HG02572.pri.mat.f1_v2 (May 2021 GCA_018470445.1_HG02572.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 71 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02572.mat HG02572.pri.mat.f1_v2 (May 2021 GCA_018470445.1_HG02572.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018470445.1\ parent hprcChainNetViewchain off\ priority 8\ shortLabel HG02572.mat\ subGroups view=chain sample=s008 population=afr subpop=gwd hap=mat\ track chainHprcGCA_018470445v1\ type chain GCA_018470445.1\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_tpm_rev AorticSmsToIL1b_00hr45minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_reverse 1 72 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep2%20%28LK41%29.CNhs13372.12753-136A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12753-136A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_ctss_rev AorticSmsToIL1b_00hr45minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_reverse 0 72 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep2%20%28LK41%29.CNhs13372.12753-136A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12753-136A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF178PUI GM10266 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM10266 from ENCODE 3 (ENCFF178PUI) 0 72 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM10266 from ENCODE 3 (ENCFF178PUI)\ parent encTfChipPk off\ shortLabel GM10266 CTCF\ subGroups cellType=GM10266 factor=CTCF\ track encTfChipPkENCFF178PUI\ netHprcGCA_018470445v1 HG02572.mat netAlign GCA_018470445.1 chainHprcGCA_018470445v1 HG02572.mat HG02572.pri.mat.f1_v2 (May 2021 GCA_018470445.1_HG02572.pri.mat.f1_v2) HPRC project computed Chain Nets 1 72 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02572.mat HG02572.pri.mat.f1_v2 (May 2021 GCA_018470445.1_HG02572.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018470445.1\ parent hprcChainNetViewnet off\ priority 8\ shortLabel HG02572.mat\ subGroups view=net sample=s008 population=afr subpop=gwd hap=mat\ track netHprcGCA_018470445v1\ type netAlign GCA_018470445.1 chainHprcGCA_018470445v1\ wgEncodeRegDnaseUwSknshraPeak SK-N-SH_RA Pk narrowPeak SK-N-SH_RA neuroblastoma cell line, RA treated DNaseI Peaks from ENCODE 1 72 85 189 255 170 222 255 1 0 0 regulation 1 color 85,189,255\ longLabel SK-N-SH_RA neuroblastoma cell line, RA treated DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel SK-N-SH_RA Pk\ subGroups view=a_Peaks cellType=SK-N-SH_RA treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwSknshraPeak\ wgEncodeRegDnaseUwSknshraWig SK-N-SH_RA Sg bigWig 0 4488.56 SK-N-SH_RA neuroblastoma cell line, RA treated DNaseI Signal from ENCODE 0 72 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel SK-N-SH_RA neuroblastoma cell line, RA treated DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.679\ shortLabel SK-N-SH_RA Sg\ subGroups cellType=SK-N-SH_RA treatment=n_a tissue=brain cancer=cancer\ table wgEncodeRegDnaseUwSknshraSignal\ track wgEncodeRegDnaseUwSknshraWig\ type bigWig 0 4488.56\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_tpm_fwd AorticSmsToIL1b_00hr45minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_forward 1 73 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep3%20%28LK42%29.CNhs13580.12851-137C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12851-137C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_ctss_fwd AorticSmsToIL1b_00hr45minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_forward 0 73 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep3%20%28LK42%29.CNhs13580.12851-137C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12851-137C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwCd20ro01778Peak CD20+_RO01778 Pk narrowPeak CD20+_RO01778 B-lymphocyte, CD20+ DNaseI Peaks from ENCODE 1 73 85 183 255 170 219 255 1 0 0 regulation 1 color 85,183,255\ longLabel CD20+_RO01778 B-lymphocyte, CD20+ DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel CD20+_RO01778 Pk\ subGroups view=a_Peaks cellType=CD20_RO01778 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwCd20ro01778Peak\ wgEncodeRegDnaseUwCd20ro01778Wig CD20+_RO01778 Sg bigWig 0 1572.73 CD20+_RO01778 B-lymphocyte, CD20+ DNaseI Signal from ENCODE 0 73 85 183 255 170 219 255 0 0 0 regulation 1 color 85,183,255\ longLabel CD20+_RO01778 B-lymphocyte, CD20+ DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.68971\ shortLabel CD20+_RO01778 Sg\ subGroups cellType=CD20_RO01778 treatment=n_a tissue=blood cancer=normal\ table wgEncodeRegDnaseUwCd20ro01778Signal\ track wgEncodeRegDnaseUwCd20ro01778Wig\ type bigWig 0 1572.73\ encTfChipPkENCFF751IKT GM12864 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM12864 from ENCODE 3 (ENCFF751IKT) 0 73 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM12864 from ENCODE 3 (ENCFF751IKT)\ parent encTfChipPk off\ shortLabel GM12864 CTCF\ subGroups cellType=GM12864 factor=CTCF\ track encTfChipPkENCFF751IKT\ chainHprcGCA_018470455v1 HG02886.mat chain GCA_018470455.1 HG02886.mat HG02886.pri.mat.f1_v2 (May 2021 GCA_018470455.1_HG02886.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 73 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02886.mat HG02886.pri.mat.f1_v2 (May 2021 GCA_018470455.1_HG02886.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018470455.1\ parent hprcChainNetViewchain off\ priority 9\ shortLabel HG02886.mat\ subGroups view=chain sample=s009 population=afr subpop=gwd hap=mat\ track chainHprcGCA_018470455v1\ type chain GCA_018470455.1\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_tpm_rev AorticSmsToIL1b_00hr45minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_reverse 1 74 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep3%20%28LK42%29.CNhs13580.12851-137C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12851-137C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_ctss_rev AorticSmsToIL1b_00hr45minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_reverse 0 74 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep3%20%28LK42%29.CNhs13580.12851-137C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12851-137C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF965YZI GM12865 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM12865 from ENCODE 3 (ENCFF965YZI) 0 74 85 147 255 170 201 255 0 0 0 regulation 1 color 85,147,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM12865 from ENCODE 3 (ENCFF965YZI)\ parent encTfChipPk off\ shortLabel GM12865 CTCF\ subGroups cellType=GM12865 factor=CTCF\ track encTfChipPkENCFF965YZI\ netHprcGCA_018470455v1 HG02886.mat netAlign GCA_018470455.1 chainHprcGCA_018470455v1 HG02886.mat HG02886.pri.mat.f1_v2 (May 2021 GCA_018470455.1_HG02886.pri.mat.f1_v2) HPRC project computed Chain Nets 1 74 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02886.mat HG02886.pri.mat.f1_v2 (May 2021 GCA_018470455.1_HG02886.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018470455.1\ parent hprcChainNetViewnet off\ priority 9\ shortLabel HG02886.mat\ subGroups view=net sample=s009 population=afr subpop=gwd hap=mat\ track netHprcGCA_018470455v1\ type netAlign GCA_018470455.1 chainHprcGCA_018470455v1\ wgEncodeRegDnaseUwTh1Peak Th1 Pk narrowPeak Th1 T-lymphocyte, helper type 1 DNaseI Peaks from ENCODE 1 74 85 178 255 170 216 255 1 0 0 regulation 1 color 85,178,255\ longLabel Th1 T-lymphocyte, helper type 1 DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel Th1 Pk\ subGroups view=a_Peaks cellType=Th1 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwTh1Peak\ wgEncodeRegDnaseUwTh1Wig Th1 Sg bigWig 0 2056.65 Th1 T-lymphocyte, helper type 1 DNaseI Signal from ENCODE 0 74 85 178 255 170 216 255 0 0 0 regulation 1 color 85,178,255\ longLabel Th1 T-lymphocyte, helper type 1 DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.69959\ shortLabel Th1 Sg\ subGroups cellType=Th1 treatment=n_a tissue=blood cancer=unknown\ table wgEncodeRegDnaseUwTh1Signal\ track wgEncodeRegDnaseUwTh1Wig\ type bigWig 0 2056.65\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_tpm_fwd AorticSmsToIL1b_01hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_forward 1 75 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep1%20%28LK43%29.CNhs13353.12656-134I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12656-134I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_01hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_ctss_fwd AorticSmsToIL1b_01hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_forward 0 75 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep1%20%28LK43%29.CNhs13353.12656-134I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12656-134I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_01hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF913EEI GM12873 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM12873 from ENCODE 3 (ENCFF913EEI) 0 75 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM12873 from ENCODE 3 (ENCFF913EEI)\ parent encTfChipPk off\ shortLabel GM12873 CTCF\ subGroups cellType=GM12873 factor=CTCF\ track encTfChipPkENCFF913EEI\ chainHprcGCA_018473295v1 HG03540.mat chain GCA_018473295.1 HG03540.mat HG03540.pri.mat.f1_v2 (May 2021 GCA_018473295.1_HG03540.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 75 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03540.mat HG03540.pri.mat.f1_v2 (May 2021 GCA_018473295.1_HG03540.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018473295.1\ parent hprcChainNetViewchain off\ priority 11\ shortLabel HG03540.mat\ subGroups view=chain sample=s011 population=afr subpop=gwd hap=mat\ track chainHprcGCA_018473295v1\ type chain GCA_018473295.1\ wgEncodeRegDnaseUwTh2Peak Th2 Pk narrowPeak Th2 T-lymphocyte, helper type 2 DNaseI Peaks from ENCODE 1 75 85 176 255 170 215 255 1 0 0 regulation 1 color 85,176,255\ longLabel Th2 T-lymphocyte, helper type 2 DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel Th2 Pk\ subGroups view=a_Peaks cellType=Th2 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwTh2Peak\ wgEncodeRegDnaseUwTh2Wig Th2 Sg bigWig 0 1526.14 Th2 T-lymphocyte, helper type 2 DNaseI Signal from ENCODE 0 75 85 176 255 170 215 255 0 0 0 regulation 1 color 85,176,255\ longLabel Th2 T-lymphocyte, helper type 2 DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.70375\ shortLabel Th2 Sg\ subGroups cellType=Th2 treatment=n_a tissue=blood cancer=unknown\ table wgEncodeRegDnaseUwTh2Signal\ track wgEncodeRegDnaseUwTh2Wig\ type bigWig 0 1526.14\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_tpm_rev AorticSmsToIL1b_01hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_reverse 1 76 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep1%20%28LK43%29.CNhs13353.12656-134I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12656-134I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_01hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_ctss_rev AorticSmsToIL1b_01hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_reverse 0 76 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep1%20%28LK43%29.CNhs13353.12656-134I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12656-134I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_01hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF834WWA GM12874 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM12874 from ENCODE 3 (ENCFF834WWA) 0 76 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM12874 from ENCODE 3 (ENCFF834WWA)\ parent encTfChipPk off\ shortLabel GM12874 CTCF\ subGroups cellType=GM12874 factor=CTCF\ track encTfChipPkENCFF834WWA\ netHprcGCA_018473295v1 HG03540.mat netAlign GCA_018473295.1 chainHprcGCA_018473295v1 HG03540.mat HG03540.pri.mat.f1_v2 (May 2021 GCA_018473295.1_HG03540.pri.mat.f1_v2) HPRC project computed Chain Nets 1 76 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03540.mat HG03540.pri.mat.f1_v2 (May 2021 GCA_018473295.1_HG03540.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018473295.1\ parent hprcChainNetViewnet off\ priority 11\ shortLabel HG03540.mat\ subGroups view=net sample=s011 population=afr subpop=gwd hap=mat\ track netHprcGCA_018473295v1\ type netAlign GCA_018473295.1 chainHprcGCA_018473295v1\ wgEncodeRegDnaseUwTh1wb54553204Peak Th1_Wb54553204 Pk narrowPeak Th1_Wb54553204 T-lymphocyte, helper type 1 DNaseI Peaks from ENCODE 1 76 85 173 255 170 214 255 1 0 0 regulation 1 color 85,173,255\ longLabel Th1_Wb54553204 T-lymphocyte, helper type 1 DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel Th1_Wb54553204 Pk\ subGroups view=a_Peaks cellType=Th1_Wb54553204 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwTh1wb54553204Peak\ wgEncodeRegDnaseUwTh1wb54553204Wig Th1_Wb54553204 Sg bigWig 0 593.107 Th1_Wb54553204 T-lymphocyte, helper type 1 DNaseI Signal from ENCODE 0 76 85 173 255 170 214 255 0 0 0 regulation 1 color 85,173,255\ longLabel Th1_Wb54553204 T-lymphocyte, helper type 1 DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.70849\ shortLabel Th1_Wb54553204 Sg\ subGroups cellType=Th1_Wb54553204 treatment=n_a tissue=blood cancer=normal\ table wgEncodeRegDnaseUwTh1wb54553204Signal\ track wgEncodeRegDnaseUwTh1wb54553204Wig\ type bigWig 0 593.107\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_tpm_fwd AorticSmsToIL1b_01hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_forward 1 77 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep2%20%28LK44%29.CNhs13373.12754-136A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12754-136A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_01hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_ctss_fwd AorticSmsToIL1b_01hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_forward 0 77 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep2%20%28LK44%29.CNhs13373.12754-136A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12754-136A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_01hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF003VDB GM12878 ARID3A narrowPeak Transcription Factor ChIP-seq Peaks of ARID3A in GM12878 from ENCODE 3 (ENCFF003VDB) 0 77 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ARID3A in GM12878 from ENCODE 3 (ENCFF003VDB)\ parent encTfChipPk off\ shortLabel GM12878 ARID3A\ subGroups cellType=GM12878 factor=ARID3A\ track encTfChipPkENCFF003VDB\ chainHprcGCA_018503585v1 HG02818.mat chain GCA_018503585.1 HG02818.mat HG02818.pri.mat.f1_v2 (May 2021 GCA_018503585.1_HG02818.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 77 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02818.mat HG02818.pri.mat.f1_v2 (May 2021 GCA_018503585.1_HG02818.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018503585.1\ parent hprcChainNetViewchain off\ priority 14\ shortLabel HG02818.mat\ subGroups view=chain sample=s014 population=afr subpop=gwd hap=mat\ track chainHprcGCA_018503585v1\ type chain GCA_018503585.1\ wgEncodeRegDnaseUwJurkatPeak Jurkat Pk narrowPeak Jurkat T-lymphocyte acute leukemia cell line DNaseI Peaks from ENCODE 1 77 85 165 255 170 210 255 1 0 0 regulation 1 color 85,165,255\ longLabel Jurkat T-lymphocyte acute leukemia cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel Jurkat Pk\ subGroups view=a_Peaks cellType=Jurkat treatment=n_a tissue=blood cancer=cancer\ track wgEncodeRegDnaseUwJurkatPeak\ wgEncodeRegDnaseUwJurkatWig Jurkat Sg bigWig 0 5823.31 Jurkat T-lymphocyte acute leukemia cell line DNaseI Signal from ENCODE 0 77 85 165 255 170 210 255 0 0 0 regulation 1 color 85,165,255\ longLabel Jurkat T-lymphocyte acute leukemia cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.71966\ shortLabel Jurkat Sg\ subGroups cellType=Jurkat treatment=n_a tissue=blood cancer=cancer\ table wgEncodeRegDnaseUwJurkatSignal\ track wgEncodeRegDnaseUwJurkatWig\ type bigWig 0 5823.31\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_tpm_rev AorticSmsToIL1b_01hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_reverse 1 78 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep2%20%28LK44%29.CNhs13373.12754-136A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12754-136A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_01hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_ctss_rev AorticSmsToIL1b_01hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_reverse 0 78 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep2%20%28LK44%29.CNhs13373.12754-136A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12754-136A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_01hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF758RQJ GM12878 ARNT narrowPeak Transcription Factor ChIP-seq Peaks of ARNT in GM12878 from ENCODE 3 (ENCFF758RQJ) 0 78 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ARNT in GM12878 from ENCODE 3 (ENCFF758RQJ)\ parent encTfChipPk off\ shortLabel GM12878 ARNT\ subGroups cellType=GM12878 factor=ARNT\ track encTfChipPkENCFF758RQJ\ wgEncodeRegDnaseUwGm12878Peak GM12878 Pk narrowPeak GM12878 B-lymphocyte, lymphoblastoid cell line DNaseI Peaks from ENCODE 1 78 85 152 255 170 203 255 1 0 0 regulation 1 color 85,152,255\ longLabel GM12878 B-lymphocyte, lymphoblastoid cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak on\ shortLabel GM12878 Pk\ subGroups view=a_Peaks cellType=GM12878 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwGm12878Peak\ wgEncodeRegDnaseUwGm12878Wig GM12878 Sg bigWig 0 7218.11 GM12878 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE 0 78 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel GM12878 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig on\ priority 1.73349\ shortLabel GM12878 Sg\ subGroups cellType=GM12878 treatment=n_a tissue=blood cancer=normal\ table wgEncodeRegDnaseUwGm12878Signal\ track wgEncodeRegDnaseUwGm12878Wig\ type bigWig 0 7218.11\ netHprcGCA_018503585v1 HG02818.mat netAlign GCA_018503585.1 chainHprcGCA_018503585v1 HG02818.mat HG02818.pri.mat.f1_v2 (May 2021 GCA_018503585.1_HG02818.pri.mat.f1_v2) HPRC project computed Chain Nets 1 78 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02818.mat HG02818.pri.mat.f1_v2 (May 2021 GCA_018503585.1_HG02818.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018503585.1\ parent hprcChainNetViewnet off\ priority 14\ shortLabel HG02818.mat\ subGroups view=net sample=s014 population=afr subpop=gwd hap=mat\ track netHprcGCA_018503585v1\ type netAlign GCA_018503585.1 chainHprcGCA_018503585v1\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_tpm_fwd AorticSmsToIL1b_02hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_forward 1 79 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep2%20%28LK47%29.CNhs13374.12755-136B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12755-136B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_02hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_ctss_fwd AorticSmsToIL1b_02hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_forward 0 79 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep2%20%28LK47%29.CNhs13374.12755-136B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12755-136B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_02hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwGm12865Peak GM12865 Pk narrowPeak GM12865 B-lymphocyte, lymphoblastoid cell line DNaseI Peaks from ENCODE 1 79 85 147 255 170 201 255 1 0 0 regulation 1 color 85,147,255\ longLabel GM12865 B-lymphocyte, lymphoblastoid cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel GM12865 Pk\ subGroups view=a_Peaks cellType=GM12865 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwGm12865Peak\ wgEncodeRegDnaseUwGm12865Wig GM12865 Sg bigWig 0 8525.5 GM12865 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE 0 79 85 147 255 170 201 255 0 0 0 regulation 1 color 85,147,255\ longLabel GM12865 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.73856\ shortLabel GM12865 Sg\ subGroups cellType=GM12865 treatment=n_a tissue=blood cancer=unknown\ table wgEncodeRegDnaseUwGm12865Signal\ track wgEncodeRegDnaseUwGm12865Wig\ type bigWig 0 8525.5\ encTfChipPkENCFF096XRG GM12878 ASH2L narrowPeak Transcription Factor ChIP-seq Peaks of ASH2L in GM12878 from ENCODE 3 (ENCFF096XRG) 0 79 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ASH2L in GM12878 from ENCODE 3 (ENCFF096XRG)\ parent encTfChipPk off\ shortLabel GM12878 ASH2L\ subGroups cellType=GM12878 factor=ASH2L\ track encTfChipPkENCFF096XRG\ chainHprcGCA_018504065v1 HG02723.mat chain GCA_018504065.1 HG02723.mat HG02723.pri.mat.f1_v2 (May 2021 GCA_018504065.1_HG02723.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 79 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02723.mat HG02723.pri.mat.f1_v2 (May 2021 GCA_018504065.1_HG02723.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504065.1\ parent hprcChainNetViewchain off\ priority 15\ shortLabel HG02723.mat\ subGroups view=chain sample=s015 population=afr subpop=gwd hap=mat\ track chainHprcGCA_018504065v1\ type chain GCA_018504065.1\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_tpm_rev AorticSmsToIL1b_02hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_reverse 1 80 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep2%20%28LK47%29.CNhs13374.12755-136B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12755-136B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_02hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_ctss_rev AorticSmsToIL1b_02hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_reverse 0 80 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep2%20%28LK47%29.CNhs13374.12755-136B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12755-136B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_02hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF210HTZ GM12878 ATF2 1 narrowPeak Transcription Factor ChIP-seq Peaks of ATF2 in GM12878 from ENCODE 3 (ENCFF210HTZ) 0 80 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ATF2 in GM12878 from ENCODE 3 (ENCFF210HTZ)\ parent encTfChipPk off\ shortLabel GM12878 ATF2 1\ subGroups cellType=GM12878 factor=ATF2\ track encTfChipPkENCFF210HTZ\ netHprcGCA_018504065v1 HG02723.mat netAlign GCA_018504065.1 chainHprcGCA_018504065v1 HG02723.mat HG02723.pri.mat.f1_v2 (May 2021 GCA_018504065.1_HG02723.pri.mat.f1_v2) HPRC project computed Chain Nets 1 80 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02723.mat HG02723.pri.mat.f1_v2 (May 2021 GCA_018504065.1_HG02723.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504065.1\ parent hprcChainNetViewnet off\ priority 15\ shortLabel HG02723.mat\ subGroups view=net sample=s015 population=afr subpop=gwd hap=mat\ track netHprcGCA_018504065v1\ type netAlign GCA_018504065.1 chainHprcGCA_018504065v1\ wgEncodeRegDnaseUwMonocytescd14ro01746Peak Monocyte-CD14+ Pk narrowPeak Monocytes-CD14+_RO01746 monocyte, CD14+ DNaseI Peaks from ENCODE 1 80 85 135 255 170 195 255 1 0 0 regulation 1 color 85,135,255\ longLabel Monocytes-CD14+_RO01746 monocyte, CD14+ DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel Monocyte-CD14+ Pk\ subGroups view=a_Peaks cellType=Monocytes_CD14_RO01746 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwMonocytescd14ro01746Peak\ wgEncodeRegDnaseUwMonocytescd14ro01746Wig Monocyte-CD14+ Sg bigWig 0 853.111 Monocytes-CD14+_RO01746 monocyte, CD14+ DNaseI Signal from ENCODE 0 80 85 135 255 170 195 255 0 0 0 regulation 1 color 85,135,255\ longLabel Monocytes-CD14+_RO01746 monocyte, CD14+ DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.75089\ shortLabel Monocyte-CD14+ Sg\ subGroups cellType=Monocytes_CD14_RO01746 treatment=n_a tissue=blood cancer=normal\ table wgEncodeRegDnaseUwMonocytescd14ro01746Signal\ track wgEncodeRegDnaseUwMonocytescd14ro01746Wig\ type bigWig 0 853.111\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_tpm_fwd AorticSmsToIL1b_02hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_forward 1 81 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep3%20%28LK48%29.CNhs13582.12853-137C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12853-137C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_02hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_ctss_fwd AorticSmsToIL1b_02hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_forward 0 81 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep3%20%28LK48%29.CNhs13582.12853-137C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12853-137C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_02hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF806KKM GM12878 ATF2 2 narrowPeak Transcription Factor ChIP-seq Peaks of ATF2 in GM12878 from ENCODE 3 (ENCFF806KKM) 0 81 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ATF2 in GM12878 from ENCODE 3 (ENCFF806KKM)\ parent encTfChipPk off\ shortLabel GM12878 ATF2 2\ subGroups cellType=GM12878 factor=ATF2\ track encTfChipPkENCFF806KKM\ chainHprcGCA_018469925v1 HG02622.pat chain GCA_018469925.1 HG02622.pat HG02622.alt.pat.f1_v2 (May 2021 GCA_018469925.1_HG02622.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 81 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02622.pat HG02622.alt.pat.f1_v2 (May 2021 GCA_018469925.1_HG02622.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469925.1\ parent hprcChainNetViewchain off\ priority 2\ shortLabel HG02622.pat\ subGroups view=chain sample=s002 population=afr subpop=gwd hap=pat\ track chainHprcGCA_018469925v1\ type chain GCA_018469925.1\ wgEncodeRegDnaseUwHl60Peak HL-60 Pk narrowPeak HL-60 acute promyelocytic leukemia (APL) cell line DNaseI Peaks from ENCODE 1 81 85 124 255 170 189 255 1 0 0 regulation 1 color 85,124,255\ longLabel HL-60 acute promyelocytic leukemia (APL) cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HL-60 Pk\ subGroups view=a_Peaks cellType=HL-60 treatment=n_a tissue=blood cancer=cancer\ track wgEncodeRegDnaseUwHl60Peak\ wgEncodeRegDnaseUwHl60Wig HL-60 Sg bigWig 0 5012.92 HL-60 acute promyelocytic leukemia (APL) cell line DNaseI Signal from ENCODE 0 81 85 124 255 170 189 255 0 0 0 regulation 1 color 85,124,255\ longLabel HL-60 acute promyelocytic leukemia (APL) cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.76239\ shortLabel HL-60 Sg\ subGroups cellType=HL-60 treatment=n_a tissue=blood cancer=cancer\ table wgEncodeRegDnaseUwHl60Signal\ track wgEncodeRegDnaseUwHl60Wig\ type bigWig 0 5012.92\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_tpm_rev AorticSmsToIL1b_02hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_reverse 1 82 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep3%20%28LK48%29.CNhs13582.12853-137C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12853-137C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_02hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_ctss_rev AorticSmsToIL1b_02hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_reverse 0 82 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep3%20%28LK48%29.CNhs13582.12853-137C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12853-137C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_02hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF495PWL GM12878 ATF7 narrowPeak Transcription Factor ChIP-seq Peaks of ATF7 in GM12878 from ENCODE 3 (ENCFF495PWL) 0 82 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ATF7 in GM12878 from ENCODE 3 (ENCFF495PWL)\ parent encTfChipPk off\ shortLabel GM12878 ATF7\ subGroups cellType=GM12878 factor=ATF7\ track encTfChipPkENCFF495PWL\ netHprcGCA_018469925v1 HG02622.pat netAlign GCA_018469925.1 chainHprcGCA_018469925v1 HG02622.pat HG02622.alt.pat.f1_v2 (May 2021 GCA_018469925.1_HG02622.alt.pat.f1_v2) HPRC project computed Chain Nets 1 82 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02622.pat HG02622.alt.pat.f1_v2 (May 2021 GCA_018469925.1_HG02622.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469925.1\ parent hprcChainNetViewnet off\ priority 2\ shortLabel HG02622.pat\ subGroups view=net sample=s002 population=afr subpop=gwd hap=pat\ track netHprcGCA_018469925v1\ type netAlign GCA_018469925.1 chainHprcGCA_018469925v1\ wgEncodeRegDnaseUwNb4Peak NB4 Pk narrowPeak NB4 acute promyelocytic leukemia (APL) cell line DNaseI Peaks from ENCODE 1 82 85 112 255 170 183 255 1 0 0 regulation 1 color 85,112,255\ longLabel NB4 acute promyelocytic leukemia (APL) cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel NB4 Pk\ subGroups view=a_Peaks cellType=NB4 treatment=n_a tissue=bone_marrow cancer=cancer\ track wgEncodeRegDnaseUwNb4Peak\ wgEncodeRegDnaseUwNb4Wig NB4 Sg bigWig 0 7662.2 NB4 acute promyelocytic leukemia (APL) cell line DNaseI Signal from ENCODE 0 82 85 112 255 170 183 255 0 0 0 regulation 1 color 85,112,255\ longLabel NB4 acute promyelocytic leukemia (APL) cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.77436\ shortLabel NB4 Sg\ subGroups cellType=NB4 treatment=n_a tissue=bone_marrow cancer=cancer\ table wgEncodeRegDnaseUwNb4Signal\ track wgEncodeRegDnaseUwNb4Wig\ type bigWig 0 7662.2\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_tpm_fwd AorticSmsToIL1b_03hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_forward 1 83 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep1%20%28LK49%29.CNhs13355.12658-134I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12658-134I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_03hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_ctss_fwd AorticSmsToIL1b_03hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_forward 0 83 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep1%20%28LK49%29.CNhs13355.12658-134I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12658-134I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_03hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF725YZH GM12878 BACH1 narrowPeak Transcription Factor ChIP-seq Peaks of BACH1 in GM12878 from ENCODE 3 (ENCFF725YZH) 0 83 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of BACH1 in GM12878 from ENCODE 3 (ENCFF725YZH)\ parent encTfChipPk off\ shortLabel GM12878 BACH1\ subGroups cellType=GM12878 factor=BACH1\ track encTfChipPkENCFF725YZH\ wgEncodeRegDnaseUwH7hescPeak H7-ES Pk narrowPeak H7-hESC embryonic stem cell DNaseI Peaks from ENCODE 1 83 85 93 255 170 174 255 1 0 0 regulation 1 color 85,93,255\ longLabel H7-hESC embryonic stem cell DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak on\ shortLabel H7-ES Pk\ subGroups view=a_Peaks cellType=H7-hESC treatment=n_a tissue=embryo cancer=unknown\ track wgEncodeRegDnaseUwH7hescPeak\ wgEncodeRegDnaseUwH7hescWig H7-ES Sg bigWig 0 13035.4 H7-hESC embryonic stem cell DNaseI Signal from ENCODE 0 83 85 93 255 170 174 255 0 0 0 regulation 1 color 85,93,255\ longLabel H7-hESC embryonic stem cell DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig on\ priority 1.79509\ shortLabel H7-ES Sg\ subGroups cellType=H7-hESC treatment=n_a tissue=embryo cancer=unknown\ table wgEncodeRegDnaseUwH7hescSignal\ track wgEncodeRegDnaseUwH7hescWig\ type bigWig 0 13035.4\ chainHprcGCA_018469945v1 HG02630.pat chain GCA_018469945.1 HG02630.pat HG02630.alt.pat.f1_v2 (May 2021 GCA_018469945.1_HG02630.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 83 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02630.pat HG02630.alt.pat.f1_v2 (May 2021 GCA_018469945.1_HG02630.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469945.1\ parent hprcChainNetViewchain off\ priority 4\ shortLabel HG02630.pat\ subGroups view=chain sample=s004 population=afr subpop=gwd hap=pat\ track chainHprcGCA_018469945v1\ type chain GCA_018469945.1\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_tpm_rev AorticSmsToIL1b_03hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_reverse 1 84 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep1%20%28LK49%29.CNhs13355.12658-134I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12658-134I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_03hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_ctss_rev AorticSmsToIL1b_03hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_reverse 0 84 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep1%20%28LK49%29.CNhs13355.12658-134I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12658-134I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_03hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF832YIE GM12878 BATF narrowPeak Transcription Factor ChIP-seq Peaks of BATF in GM12878 from ENCODE 3 (ENCFF832YIE) 0 84 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of BATF in GM12878 from ENCODE 3 (ENCFF832YIE)\ parent encTfChipPk off\ shortLabel GM12878 BATF\ subGroups cellType=GM12878 factor=BATF\ track encTfChipPkENCFF832YIE\ wgEncodeRegDnaseUwH7hescDiffprota5dPeak H7-ES diff 5d Pk narrowPeak H7-hESC embryonic stem cell (diff 5d) DNaseI Peaks from ENCODE 1 84 85 88 255 170 171 255 1 0 0 regulation 1 color 85,88,255\ longLabel H7-hESC embryonic stem cell (diff 5d) DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel H7-ES diff 5d Pk\ subGroups view=a_Peaks cellType=H7-hESC treatment=diffProtA_5d tissue=embryo cancer=unknown\ track wgEncodeRegDnaseUwH7hescDiffprota5dPeak\ wgEncodeRegDnaseUwH7hescDiffprota5dWig H7-ES diff 5d Sg bigWig 0 5836.88 H7-hESC embryonic stem cell (diff 5d) DNaseI Signal from ENCODE 0 84 85 88 255 170 171 255 0 0 0 regulation 1 color 85,88,255\ longLabel H7-hESC embryonic stem cell (diff 5d) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.80059\ shortLabel H7-ES diff 5d Sg\ subGroups cellType=H7-hESC treatment=diffProtA_5d tissue=embryo cancer=unknown\ table wgEncodeRegDnaseUwH7hescDiffprota5dSignal\ track wgEncodeRegDnaseUwH7hescDiffprota5dWig\ type bigWig 0 5836.88\ netHprcGCA_018469945v1 HG02630.pat netAlign GCA_018469945.1 chainHprcGCA_018469945v1 HG02630.pat HG02630.alt.pat.f1_v2 (May 2021 GCA_018469945.1_HG02630.alt.pat.f1_v2) HPRC project computed Chain Nets 1 84 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02630.pat HG02630.alt.pat.f1_v2 (May 2021 GCA_018469945.1_HG02630.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469945.1\ parent hprcChainNetViewnet off\ priority 4\ shortLabel HG02630.pat\ subGroups view=net sample=s004 population=afr subpop=gwd hap=pat\ track netHprcGCA_018469945v1\ type netAlign GCA_018469945.1 chainHprcGCA_018469945v1\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_tpm_fwd AorticSmsToIL1b_03hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_forward 1 85 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep2%20%28LK50%29.CNhs13375.12756-136B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12756-136B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_03hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_ctss_fwd AorticSmsToIL1b_03hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_forward 0 85 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep2%20%28LK50%29.CNhs13375.12756-136B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12756-136B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_03hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF383HAY GM12878 BCL11A narrowPeak Transcription Factor ChIP-seq Peaks of BCL11A in GM12878 from ENCODE 3 (ENCFF383HAY) 0 85 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of BCL11A in GM12878 from ENCODE 3 (ENCFF383HAY)\ parent encTfChipPk off\ shortLabel GM12878 BCL11A\ subGroups cellType=GM12878 factor=BCL11A\ track encTfChipPkENCFF383HAY\ wgEncodeRegDnaseUwH7hescDiffprota14dPeak H7-ES diff 14d Pk narrowPeak H7-hESC embryonic stem cell (diff 14d) DNaseI Peaks from ENCODE 1 85 89 85 255 172 170 255 1 0 0 regulation 1 color 89,85,255\ longLabel H7-hESC embryonic stem cell (diff 14d) DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel H7-ES diff 14d Pk\ subGroups view=a_Peaks cellType=H7-hESC treatment=diffProtA_14d tissue=embryo cancer=unknown\ track wgEncodeRegDnaseUwH7hescDiffprota14dPeak\ wgEncodeRegDnaseUwH7hescDiffprota14dWig H7-ES diff 14d Sg bigWig 0 21393.7 H7-hESC embryonic stem cell (diff 14d) DNaseI Signal from ENCODE 0 85 89 85 255 172 170 255 0 0 0 regulation 1 color 89,85,255\ longLabel H7-hESC embryonic stem cell (diff 14d) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.80809\ shortLabel H7-ES diff 14d Sg\ subGroups cellType=H7-hESC treatment=diffProtA_14d tissue=embryo cancer=unknown\ table wgEncodeRegDnaseUwH7hescDiffprota14dSignal\ track wgEncodeRegDnaseUwH7hescDiffprota14dWig\ type bigWig 0 21393.7\ chainHprcGCA_018470425v1 HG02717.pat chain GCA_018470425.1 HG02717.pat HG02717.alt.pat.f1_v2 (May 2021 GCA_018470425.1_HG02717.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 85 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02717.pat HG02717.alt.pat.f1_v2 (May 2021 GCA_018470425.1_HG02717.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018470425.1\ parent hprcChainNetViewchain off\ priority 6\ shortLabel HG02717.pat\ subGroups view=chain sample=s006 population=afr subpop=gwd hap=pat\ track chainHprcGCA_018470425v1\ type chain GCA_018470425.1\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_tpm_rev AorticSmsToIL1b_03hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_reverse 1 86 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep2%20%28LK50%29.CNhs13375.12756-136B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12756-136B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_03hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_ctss_rev AorticSmsToIL1b_03hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_reverse 0 86 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep2%20%28LK50%29.CNhs13375.12756-136B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12756-136B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_03hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF247MHT GM12878 BCL3 narrowPeak Transcription Factor ChIP-seq Peaks of BCL3 in GM12878 from ENCODE 3 (ENCFF247MHT) 0 86 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of BCL3 in GM12878 from ENCODE 3 (ENCFF247MHT)\ parent encTfChipPk off\ shortLabel GM12878 BCL3\ subGroups cellType=GM12878 factor=BCL3\ track encTfChipPkENCFF247MHT\ netHprcGCA_018470425v1 HG02717.pat netAlign GCA_018470425.1 chainHprcGCA_018470425v1 HG02717.pat HG02717.alt.pat.f1_v2 (May 2021 GCA_018470425.1_HG02717.alt.pat.f1_v2) HPRC project computed Chain Nets 1 86 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02717.pat HG02717.alt.pat.f1_v2 (May 2021 GCA_018470425.1_HG02717.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018470425.1\ parent hprcChainNetViewnet off\ priority 6\ shortLabel HG02717.pat\ subGroups view=net sample=s006 population=afr subpop=gwd hap=pat\ track netHprcGCA_018470425v1\ type netAlign GCA_018470425.1 chainHprcGCA_018470425v1\ wgEncodeRegDnaseUwRptecPeak RPTEC Pk narrowPeak RPTEC renal proximal tubule epithelium DNaseI Peaks from ENCODE 1 86 100 85 255 177 170 255 1 0 0 regulation 1 color 100,85,255\ longLabel RPTEC renal proximal tubule epithelium DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel RPTEC Pk\ subGroups view=a_Peaks cellType=RPTEC treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwRptecPeak\ wgEncodeRegDnaseUwRptecWig RPTEC Sg bigWig 0 22767.8 RPTEC renal proximal tubule epithelium DNaseI Signal from ENCODE 0 86 100 85 255 177 170 255 0 0 0 regulation 1 color 100,85,255\ longLabel RPTEC renal proximal tubule epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.82024\ shortLabel RPTEC Sg\ subGroups cellType=RPTEC treatment=n_a tissue=kidney cancer=normal\ table wgEncodeRegDnaseUwRptecSignal\ track wgEncodeRegDnaseUwRptecWig\ type bigWig 0 22767.8\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_tpm_fwd AorticSmsToIL1b_04hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_forward 1 87 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep1%20%28LK52%29.CNhs13682.12659-134I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12659-134I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_04hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_ctss_fwd AorticSmsToIL1b_04hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_forward 0 87 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep1%20%28LK52%29.CNhs13682.12659-134I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12659-134I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_04hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF622HGF GM12878 BHLHE40 1 narrowPeak Transcription Factor ChIP-seq Peaks of BHLHE40 in GM12878 from ENCODE 3 (ENCFF622HGF) 0 87 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of BHLHE40 in GM12878 from ENCODE 3 (ENCFF622HGF)\ parent encTfChipPk off\ shortLabel GM12878 BHLHE40 1\ subGroups cellType=GM12878 factor=BHLHE40\ track encTfChipPkENCFF622HGF\ chainHprcGCA_018470435v1 HG02572.pat chain GCA_018470435.1 HG02572.pat HG02572.alt.pat.f1_v2 (May 2021 GCA_018470435.1_HG02572.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 87 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02572.pat HG02572.alt.pat.f1_v2 (May 2021 GCA_018470435.1_HG02572.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018470435.1\ parent hprcChainNetViewchain off\ priority 7\ shortLabel HG02572.pat\ subGroups view=chain sample=s007 population=afr subpop=gwd hap=pat\ track chainHprcGCA_018470435v1\ type chain GCA_018470435.1\ wgEncodeRegDnaseUwHrpepicPeak HRPEpiC Pk narrowPeak HRPEpiC retinal pigment epithelium DNaseI Peaks from ENCODE 1 87 124 85 255 189 170 255 1 0 0 regulation 1 color 124,85,255\ longLabel HRPEpiC retinal pigment epithelium DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HRPEpiC Pk\ subGroups view=a_Peaks cellType=HRPEpiC treatment=n_a tissue=eye cancer=normal\ track wgEncodeRegDnaseUwHrpepicPeak\ wgEncodeRegDnaseUwHrpepicWig HRPEpiC Sg bigWig 0 32404.6 HRPEpiC retinal pigment epithelium DNaseI Signal from ENCODE 0 87 124 85 255 189 170 255 0 0 0 regulation 1 color 124,85,255\ longLabel HRPEpiC retinal pigment epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.84446\ shortLabel HRPEpiC Sg\ subGroups cellType=HRPEpiC treatment=n_a tissue=eye cancer=normal\ table wgEncodeRegDnaseUwHrpepicSignal\ track wgEncodeRegDnaseUwHrpepicWig\ type bigWig 0 32404.6\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_tpm_rev AorticSmsToIL1b_04hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_reverse 1 88 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep1%20%28LK52%29.CNhs13682.12659-134I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12659-134I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_04hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_ctss_rev AorticSmsToIL1b_04hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_reverse 0 88 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep1%20%28LK52%29.CNhs13682.12659-134I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12659-134I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_04hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF370ZNL GM12878 BHLHE40 2 narrowPeak Transcription Factor ChIP-seq Peaks of BHLHE40 in GM12878 from ENCODE 3 (ENCFF370ZNL) 0 88 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of BHLHE40 in GM12878 from ENCODE 3 (ENCFF370ZNL)\ parent encTfChipPk off\ shortLabel GM12878 BHLHE40 2\ subGroups cellType=GM12878 factor=BHLHE40\ track encTfChipPkENCFF370ZNL\ netHprcGCA_018470435v1 HG02572.pat netAlign GCA_018470435.1 chainHprcGCA_018470435v1 HG02572.pat HG02572.alt.pat.f1_v2 (May 2021 GCA_018470435.1_HG02572.alt.pat.f1_v2) HPRC project computed Chain Nets 1 88 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02572.pat HG02572.alt.pat.f1_v2 (May 2021 GCA_018470435.1_HG02572.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018470435.1\ parent hprcChainNetViewnet off\ priority 7\ shortLabel HG02572.pat\ subGroups view=net sample=s007 population=afr subpop=gwd hap=pat\ track netHprcGCA_018470435v1\ type netAlign GCA_018470435.1 chainHprcGCA_018470435v1\ wgEncodeRegDnaseUwHmvecdlyadPeak HMVEC-dLy-Ad Pk narrowPeak HMVEC-dLy-Ad dermal MV endothelial cell, lymph DNaseI Peaks from ENCODE 1 88 133 85 255 194 170 255 1 0 0 regulation 1 color 133,85,255\ longLabel HMVEC-dLy-Ad dermal MV endothelial cell, lymph DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HMVEC-dLy-Ad Pk\ subGroups view=a_Peaks cellType=HMVEC-dLy-Ad treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdlyadPeak\ wgEncodeRegDnaseUwHmvecdlyadWig HMVEC-dLy-Ad Sg bigWig 0 39771.9 HMVEC-dLy-Ad dermal MV endothelial cell, lymph DNaseI Signal from ENCODE 0 88 133 85 255 194 170 255 0 0 0 regulation 1 color 133,85,255\ longLabel HMVEC-dLy-Ad dermal MV endothelial cell, lymph DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.85388\ shortLabel HMVEC-dLy-Ad Sg\ subGroups cellType=HMVEC-dLy-Ad treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHmvecdlyadSignal\ track wgEncodeRegDnaseUwHmvecdlyadWig\ type bigWig 0 39771.9\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_tpm_fwd AorticSmsToIL1b_04hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_forward 1 89 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep2%20%28LK53%29.CNhs13376.12757-136B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12757-136B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_04hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_ctss_fwd AorticSmsToIL1b_04hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_forward 0 89 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep2%20%28LK53%29.CNhs13376.12757-136B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12757-136B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_04hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF592LPO GM12878 BMI1 narrowPeak Transcription Factor ChIP-seq Peaks of BMI1 in GM12878 from ENCODE 3 (ENCFF592LPO) 0 89 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of BMI1 in GM12878 from ENCODE 3 (ENCFF592LPO)\ parent encTfChipPk off\ shortLabel GM12878 BMI1\ subGroups cellType=GM12878 factor=BMI1\ track encTfChipPkENCFF592LPO\ wgEncodeRegDnaseUwHelas3Peak HeLa-S3 Pk narrowPeak HeLa-S3 cervical epithelial adenocarcinoma cell line DNaseI Peaks from ENCODE 1 89 157 85 255 206 170 255 1 0 0 regulation 1 color 157,85,255\ longLabel HeLa-S3 cervical epithelial adenocarcinoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak on\ shortLabel HeLa-S3 Pk\ subGroups view=a_Peaks cellType=HeLa-S3 treatment=n_a tissue=cervix cancer=cancer\ track wgEncodeRegDnaseUwHelas3Peak\ wgEncodeRegDnaseUwHelas3Wig HeLa-S3 Sg bigWig 0 26492 HeLa-S3 cervical epithelial adenocarcinoma cell line DNaseI Signal from ENCODE 0 89 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel HeLa-S3 cervical epithelial adenocarcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig on\ priority 1.87897\ shortLabel HeLa-S3 Sg\ subGroups cellType=HeLa-S3 treatment=n_a tissue=cervix cancer=cancer\ table wgEncodeRegDnaseUwHelas3Signal\ track wgEncodeRegDnaseUwHelas3Wig\ type bigWig 0 26492\ chainHprcGCA_018470465v1 HG02886.pat chain GCA_018470465.1 HG02886.pat HG02886.alt.pat.f1_v2 (May 2021 GCA_018470465.1_HG02886.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 89 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02886.pat HG02886.alt.pat.f1_v2 (May 2021 GCA_018470465.1_HG02886.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018470465.1\ parent hprcChainNetViewchain off\ priority 10\ shortLabel HG02886.pat\ subGroups view=chain sample=s010 population=afr subpop=gwd hap=pat\ track chainHprcGCA_018470465v1\ type chain GCA_018470465.1\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_tpm_rev AorticSmsToIL1b_04hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_reverse 1 90 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep2%20%28LK53%29.CNhs13376.12757-136B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12757-136B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_04hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_ctss_rev AorticSmsToIL1b_04hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_reverse 0 90 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep2%20%28LK53%29.CNhs13376.12757-136B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12757-136B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_04hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF005JKU GM12878 BRCA1 narrowPeak Transcription Factor ChIP-seq Peaks of BRCA1 in GM12878 from ENCODE 3 (ENCFF005JKU) 0 90 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of BRCA1 in GM12878 from ENCODE 3 (ENCFF005JKU)\ parent encTfChipPk off\ shortLabel GM12878 BRCA1\ subGroups cellType=GM12878 factor=BRCA1\ track encTfChipPkENCFF005JKU\ netHprcGCA_018470465v1 HG02886.pat netAlign GCA_018470465.1 chainHprcGCA_018470465v1 HG02886.pat HG02886.alt.pat.f1_v2 (May 2021 GCA_018470465.1_HG02886.alt.pat.f1_v2) HPRC project computed Chain Nets 1 90 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02886.pat HG02886.alt.pat.f1_v2 (May 2021 GCA_018470465.1_HG02886.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018470465.1\ parent hprcChainNetViewnet off\ priority 10\ shortLabel HG02886.pat\ subGroups view=net sample=s010 population=afr subpop=gwd hap=pat\ track netHprcGCA_018470465v1\ type netAlign GCA_018470465.1 chainHprcGCA_018470465v1\ wgEncodeRegDnaseUwSknmcPeak SK-N-MC Pk narrowPeak SK-N-MC neuroepithelioma cell line DNaseI Peaks from ENCODE 1 90 176 85 255 215 170 255 1 0 0 regulation 1 color 176,85,255\ longLabel SK-N-MC neuroepithelioma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel SK-N-MC Pk\ subGroups view=a_Peaks cellType=SK-N-MC treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwSknmcPeak\ wgEncodeRegDnaseUwSknmcWig SK-N-MC Sg bigWig 0 5864.79 SK-N-MC neuroepithelioma cell line DNaseI Signal from ENCODE 0 90 176 85 255 215 170 255 0 0 0 regulation 1 color 176,85,255\ longLabel SK-N-MC neuroepithelioma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.90393\ shortLabel SK-N-MC Sg\ subGroups cellType=SK-N-MC treatment=n_a tissue=brain cancer=cancer\ table wgEncodeRegDnaseUwSknmcSignal\ track wgEncodeRegDnaseUwSknmcWig\ type bigWig 0 5864.79\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_tpm_fwd AorticSmsToIL1b_04hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_forward 1 91 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep3%20%28LK54%29.CNhs13584.12855-137D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12855-137D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_04hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_ctss_fwd AorticSmsToIL1b_04hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_forward 0 91 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep3%20%28LK54%29.CNhs13584.12855-137D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12855-137D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_04hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF070SOX GM12878 CBFB narrowPeak Transcription Factor ChIP-seq Peaks of CBFB in GM12878 from ENCODE 3 (ENCFF070SOX) 0 91 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of CBFB in GM12878 from ENCODE 3 (ENCFF070SOX)\ parent encTfChipPk off\ shortLabel GM12878 CBFB\ subGroups cellType=GM12878 factor=CBFB\ track encTfChipPkENCFF070SOX\ chainHprcGCA_018473315v1 HG03540.pat chain GCA_018473315.1 HG03540.pat HG03540.alt.pat.f1_v2 (May 2021 GCA_018473315.1_HG03540.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 91 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03540.pat HG03540.alt.pat.f1_v2 (May 2021 GCA_018473315.1_HG03540.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018473315.1\ parent hprcChainNetViewchain off\ priority 12\ shortLabel HG03540.pat\ subGroups view=chain sample=s012 population=afr subpop=gwd hap=pat\ track chainHprcGCA_018473315v1\ type chain GCA_018473315.1\ wgEncodeRegDnaseUwMcf7Peak MCF-7 Pk narrowPeak MCF-7 mammary adenocarcinoma cell line DNaseI Peaks from ENCODE 1 91 190 85 255 222 170 255 1 0 0 regulation 1 color 190,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel MCF-7 Pk\ subGroups view=a_Peaks cellType=MCF-7 treatment=n_a tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwMcf7Peak\ wgEncodeRegDnaseUwMcf7Wig MCF-7 Sg bigWig 0 15780.8 MCF-7 mammary adenocarcinoma cell line DNaseI Signal from ENCODE 0 91 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.93061\ shortLabel MCF-7 Sg\ subGroups cellType=MCF-7 treatment=n_a tissue=breast cancer=cancer\ table wgEncodeRegDnaseUwMcf7Signal\ track wgEncodeRegDnaseUwMcf7Wig\ type bigWig 0 15780.8\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_tpm_rev AorticSmsToIL1b_04hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_reverse 1 92 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep3%20%28LK54%29.CNhs13584.12855-137D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12855-137D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_04hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_ctss_rev AorticSmsToIL1b_04hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_reverse 0 92 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep3%20%28LK54%29.CNhs13584.12855-137D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12855-137D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_04hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF552QOA GM12878 CBX3 narrowPeak Transcription Factor ChIP-seq Peaks of CBX3 in GM12878 from ENCODE 3 (ENCFF552QOA) 0 92 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of CBX3 in GM12878 from ENCODE 3 (ENCFF552QOA)\ parent encTfChipPk off\ shortLabel GM12878 CBX3\ subGroups cellType=GM12878 factor=CBX3\ track encTfChipPkENCFF552QOA\ netHprcGCA_018473315v1 HG03540.pat netAlign GCA_018473315.1 chainHprcGCA_018473315v1 HG03540.pat HG03540.alt.pat.f1_v2 (May 2021 GCA_018473315.1_HG03540.alt.pat.f1_v2) HPRC project computed Chain Nets 1 92 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03540.pat HG03540.alt.pat.f1_v2 (May 2021 GCA_018473315.1_HG03540.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018473315.1\ parent hprcChainNetViewnet off\ priority 12\ shortLabel HG03540.pat\ subGroups view=net sample=s012 population=afr subpop=gwd hap=pat\ track netHprcGCA_018473315v1\ type netAlign GCA_018473315.1 chainHprcGCA_018473315v1\ wgEncodeRegDnaseUwMcf7Estradiolctrl0hrPeak MCF-7 estr 0h Pk narrowPeak MCF-7 mammary adenocarcinoma cell line (estradi 0h) DNaseI Peaks from ENCODE 1 92 192 85 255 223 170 255 1 0 0 regulation 1 color 192,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line (estradi 0h) DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel MCF-7 estr 0h Pk\ subGroups view=a_Peaks cellType=MCF-7 treatment=Estradiol_ctrl_0hr tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwMcf7Estradiolctrl0hrPeak\ wgEncodeRegDnaseUwMcf7Estradiolctrl0hrWig MCF-7 estr 0h Sg bigWig 0 23308.2 MCF-7 mammary adenocarcinoma cell line (estradi 0h) DNaseI Signal from ENCODE 0 92 192 85 255 223 170 255 0 0 0 regulation 1 color 192,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line (estradi 0h) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.93395\ shortLabel MCF-7 estr 0h Sg\ subGroups cellType=MCF-7 treatment=Estradiol_ctrl_0hr tissue=breast cancer=cancer\ table wgEncodeRegDnaseUwMcf7Estradiolctrl0hrSignal\ track wgEncodeRegDnaseUwMcf7Estradiolctrl0hrWig\ type bigWig 0 23308.2\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_tpm_fwd AorticSmsToIL1b_05hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_forward 1 93 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep1%20%28LK55%29.CNhs13356.12660-134I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12660-134I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_05hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_ctss_fwd AorticSmsToIL1b_05hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_forward 0 93 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep1%20%28LK55%29.CNhs13356.12660-134I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12660-134I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_05hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF417SVR GM12878 CBX5 narrowPeak Transcription Factor ChIP-seq Peaks of CBX5 in GM12878 from ENCODE 3 (ENCFF417SVR) 0 93 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of CBX5 in GM12878 from ENCODE 3 (ENCFF417SVR)\ parent encTfChipPk off\ shortLabel GM12878 CBX5\ subGroups cellType=GM12878 factor=CBX5\ track encTfChipPkENCFF417SVR\ chainHprcGCA_018503575v1 HG02818.pat chain GCA_018503575.1 HG02818.pat HG02818.alt.pat.f1_v2 (May 2021 GCA_018503575.1_HG02818.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 93 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02818.pat HG02818.alt.pat.f1_v2 (May 2021 GCA_018503575.1_HG02818.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018503575.1\ parent hprcChainNetViewchain off\ priority 13\ shortLabel HG02818.pat\ subGroups view=chain sample=s013 population=afr subpop=gwd hap=pat\ track chainHprcGCA_018503575v1\ type chain GCA_018503575.1\ wgEncodeRegDnaseUwMcf7Estradiol100nm1hrPeak MCF-7 estr 1h Pk narrowPeak MCF-7 mammary adenocarcinoma cell line (estradi 1h) DNaseI Peaks from ENCODE 1 93 192 85 255 223 170 255 1 0 0 regulation 1 color 192,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line (estradi 1h) DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel MCF-7 estr 1h Pk\ subGroups view=a_Peaks cellType=MCF-7 treatment=Estradiol_100nM_1hr tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwMcf7Estradiol100nm1hrPeak\ wgEncodeRegDnaseUwMcf7Estradiol100nm1hrWig MCF-7 estr 1h Sg bigWig 0 24234.6 MCF-7 mammary adenocarcinoma cell line (estradi 1h) DNaseI Signal from ENCODE 0 93 192 85 255 223 170 255 0 0 0 regulation 1 color 192,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line (estradi 1h) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.93373\ shortLabel MCF-7 estr 1h Sg\ subGroups cellType=MCF-7 treatment=Estradiol_100nM_1hr tissue=breast cancer=cancer\ table wgEncodeRegDnaseUwMcf7Estradiol100nm1hrSignal\ track wgEncodeRegDnaseUwMcf7Estradiol100nm1hrWig\ type bigWig 0 24234.6\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_tpm_rev AorticSmsToIL1b_05hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_reverse 1 94 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep1%20%28LK55%29.CNhs13356.12660-134I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12660-134I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_05hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_ctss_rev AorticSmsToIL1b_05hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_reverse 0 94 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep1%20%28LK55%29.CNhs13356.12660-134I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12660-134I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_05hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF786YYI GM12878 CEBPB narrowPeak Transcription Factor ChIP-seq Peaks of CEBPB in GM12878 from ENCODE 3 (ENCFF786YYI) 0 94 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of CEBPB in GM12878 from ENCODE 3 (ENCFF786YYI)\ parent encTfChipPk off\ shortLabel GM12878 CEBPB\ subGroups cellType=GM12878 factor=CEBPB\ track encTfChipPkENCFF786YYI\ netHprcGCA_018503575v1 HG02818.pat netAlign GCA_018503575.1 chainHprcGCA_018503575v1 HG02818.pat HG02818.alt.pat.f1_v2 (May 2021 GCA_018503575.1_HG02818.alt.pat.f1_v2) HPRC project computed Chain Nets 1 94 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02818.pat HG02818.alt.pat.f1_v2 (May 2021 GCA_018503575.1_HG02818.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018503575.1\ parent hprcChainNetViewnet off\ priority 13\ shortLabel HG02818.pat\ subGroups view=net sample=s013 population=afr subpop=gwd hap=pat\ track netHprcGCA_018503575v1\ type netAlign GCA_018503575.1 chainHprcGCA_018503575v1\ wgEncodeRegDnaseUwWerirb1Peak WERI-Rb-1 Pk narrowPeak WERI-Rb-1 retinoblastoma cell line DNaseI Peaks from ENCODE 1 94 211 85 255 233 170 255 1 0 0 regulation 1 color 211,85,255\ longLabel WERI-Rb-1 retinoblastoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel WERI-Rb-1 Pk\ subGroups view=a_Peaks cellType=WERI-Rb-1 treatment=n_a tissue=eye cancer=cancer\ track wgEncodeRegDnaseUwWerirb1Peak\ wgEncodeRegDnaseUwWerirb1Wig WERI-Rb-1 Sg bigWig 0 8726.43 WERI-Rb-1 retinoblastoma cell line DNaseI Signal from ENCODE 0 94 211 85 255 233 170 255 0 0 0 regulation 1 color 211,85,255\ longLabel WERI-Rb-1 retinoblastoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.96205\ shortLabel WERI-Rb-1 Sg\ subGroups cellType=WERI-Rb-1 treatment=n_a tissue=eye cancer=cancer\ table wgEncodeRegDnaseUwWerirb1Signal\ track wgEncodeRegDnaseUwWerirb1Wig\ type bigWig 0 8726.43\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_tpm_fwd AorticSmsToIL1b_05hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_forward 1 95 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep2%20%28LK56%29.CNhs13377.12758-136B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12758-136B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_05hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_ctss_fwd AorticSmsToIL1b_05hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_forward 0 95 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep2%20%28LK56%29.CNhs13377.12758-136B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12758-136B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_05hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwBe2cPeak BE2_C Pk narrowPeak BE2_C neuroblastoma cell line DNaseI Peaks from ENCODE 1 95 237 85 255 246 170 255 1 0 0 regulation 1 color 237,85,255\ longLabel BE2_C neuroblastoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel BE2_C Pk\ subGroups view=a_Peaks cellType=BE2_C treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwBe2cPeak\ wgEncodeRegDnaseUwBe2cWig BE2_C Sg bigWig 0 72865.5 BE2_C neuroblastoma cell line DNaseI Signal from ENCODE 0 95 237 85 255 246 170 255 0 0 0 regulation 1 color 237,85,255\ longLabel BE2_C neuroblastoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 2\ shortLabel BE2_C Sg\ subGroups cellType=BE2_C treatment=n_a tissue=brain cancer=cancer\ table wgEncodeRegDnaseUwBe2cSignal\ track wgEncodeRegDnaseUwBe2cWig\ type bigWig 0 72865.5\ encTfChipPkENCFF863CTN GM12878 CHD1 narrowPeak Transcription Factor ChIP-seq Peaks of CHD1 in GM12878 from ENCODE 3 (ENCFF863CTN) 0 95 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of CHD1 in GM12878 from ENCODE 3 (ENCFF863CTN)\ parent encTfChipPk off\ shortLabel GM12878 CHD1\ subGroups cellType=GM12878 factor=CHD1\ track encTfChipPkENCFF863CTN\ chainHprcGCA_018504075v1 HG02723.pat chain GCA_018504075.1 HG02723.pat HG02723.alt.pat.f1_v2 (May 2021 GCA_018504075.1_HG02723.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 95 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02723.pat HG02723.alt.pat.f1_v2 (May 2021 GCA_018504075.1_HG02723.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504075.1\ parent hprcChainNetViewchain off\ priority 16\ shortLabel HG02723.pat\ subGroups view=chain sample=s016 population=afr subpop=gwd hap=pat\ track chainHprcGCA_018504075v1\ type chain GCA_018504075.1\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_tpm_rev AorticSmsToIL1b_05hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_reverse 1 96 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep2%20%28LK56%29.CNhs13377.12758-136B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12758-136B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_05hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_ctss_rev AorticSmsToIL1b_05hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_reverse 0 96 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep2%20%28LK56%29.CNhs13377.12758-136B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12758-136B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_05hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF249SIN GM12878 CHD4 narrowPeak Transcription Factor ChIP-seq Peaks of CHD4 in GM12878 from ENCODE 3 (ENCFF249SIN) 0 96 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of CHD4 in GM12878 from ENCODE 3 (ENCFF249SIN)\ parent encTfChipPk off\ shortLabel GM12878 CHD4\ subGroups cellType=GM12878 factor=CHD4\ track encTfChipPkENCFF249SIN\ netHprcGCA_018504075v1 HG02723.pat netAlign GCA_018504075.1 chainHprcGCA_018504075v1 HG02723.pat HG02723.alt.pat.f1_v2 (May 2021 GCA_018504075.1_HG02723.alt.pat.f1_v2) HPRC project computed Chain Nets 1 96 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02723.pat HG02723.alt.pat.f1_v2 (May 2021 GCA_018504075.1_HG02723.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504075.1\ parent hprcChainNetViewnet off\ priority 16\ shortLabel HG02723.pat\ subGroups view=net sample=s016 population=afr subpop=gwd hap=pat\ track netHprcGCA_018504075v1\ type netAlign GCA_018504075.1 chainHprcGCA_018504075v1\ wgEncodeRegDnaseUwK562Hotspot K562 Ht bigBed 6 + K562 lymphoblast chronic myeloid leukemia cell line DNaseI Hotspots from ENCODE 0 96 255 85 85 255 170 170 1 0 0 regulation 1 color 255,85,85\ longLabel K562 lymphoblast chronic myeloid leukemia cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot on\ shortLabel K562 Ht\ subGroups view=b_Hot cellType=K562 treatment=n_a tissue=bone_marrow cancer=cancer\ track wgEncodeRegDnaseUwK562Hotspot\ type bigBed 6 +\ wgEncodeRegDnaseUwA549Hotspot A549 Ht bigBed 6 + A549 lung adenocarcinoma cell line DNaseI Hotspots from ENCODE 0 97 254 93 85 254 174 170 1 0 0 regulation 1 color 254,93,85\ longLabel A549 lung adenocarcinoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel A549 Ht\ subGroups view=b_Hot cellType=A549 treatment=n_a tissue=lung cancer=cancer\ track wgEncodeRegDnaseUwA549Hotspot\ type bigBed 6 +\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_tpm_fwd AorticSmsToIL1b_06hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_forward 1 97 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep1%20%28LK58%29.CNhs13357.12661-134I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12661-134I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_06hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_ctss_fwd AorticSmsToIL1b_06hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_forward 0 97 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep1%20%28LK58%29.CNhs13357.12661-134I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12661-134I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_06hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF091YID GM12878 CREM narrowPeak Transcription Factor ChIP-seq Peaks of CREM in GM12878 from ENCODE 3 (ENCFF091YID) 0 97 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of CREM in GM12878 from ENCODE 3 (ENCFF091YID)\ parent encTfChipPk off\ shortLabel GM12878 CREM\ subGroups cellType=GM12878 factor=CREM\ track encTfChipPkENCFF091YID\ chainHprcGCA_018504665v1 NA21309.pat chain GCA_018504665.1 NA21309.pat NA21309.alt.pat.f1_v2 (May 2021 GCA_018504665.1_NA21309.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 97 0 0 0 255 255 0 1 0 0 hprc 1 longLabel NA21309.pat NA21309.alt.pat.f1_v2 (May 2021 GCA_018504665.1_NA21309.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504665.1\ parent hprcChainNetViewchain off\ priority 86\ shortLabel NA21309.pat\ subGroups view=chain sample=s086 population=other subpop=hapmap hap=pat\ track chainHprcGCA_018504665v1\ type chain GCA_018504665.1\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_tpm_rev AorticSmsToIL1b_06hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_reverse 1 98 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep1%20%28LK58%29.CNhs13357.12661-134I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12661-134I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_06hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_ctss_rev AorticSmsToIL1b_06hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_reverse 0 98 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep1%20%28LK58%29.CNhs13357.12661-134I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12661-134I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_06hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF356LIU GM12878 CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM12878 from ENCODE 3 (ENCFF356LIU) 0 98 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM12878 from ENCODE 3 (ENCFF356LIU)\ parent encTfChipPk on\ shortLabel GM12878 CTCF 1\ subGroups cellType=GM12878 factor=CTCF\ track encTfChipPkENCFF356LIU\ wgEncodeRegDnaseUwLncapHotspot LNCaP Ht bigBed 6 + LNCaP prostate adenocarcinoma cell line DNaseI Hotspots from ENCODE 0 98 255 102 85 255 178 170 1 0 0 regulation 1 color 255,102,85\ longLabel LNCaP prostate adenocarcinoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel LNCaP Ht\ subGroups view=b_Hot cellType=LNCaP treatment=n_a tissue=prostate cancer=cancer\ track wgEncodeRegDnaseUwLncapHotspot\ type bigBed 6 +\ netHprcGCA_018504665v1 NA21309.pat netAlign GCA_018504665.1 chainHprcGCA_018504665v1 NA21309.pat NA21309.alt.pat.f1_v2 (May 2021 GCA_018504665.1_NA21309.alt.pat.f1_v2) HPRC project computed Chain Nets 1 98 0 0 0 255 255 0 0 0 0 hprc 0 longLabel NA21309.pat NA21309.alt.pat.f1_v2 (May 2021 GCA_018504665.1_NA21309.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504665.1\ parent hprcChainNetViewnet off\ priority 86\ shortLabel NA21309.pat\ subGroups view=net sample=s086 population=other subpop=hapmap hap=pat\ track netHprcGCA_018504665v1\ type netAlign GCA_018504665.1 chainHprcGCA_018504665v1\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep2LK59_CNhs13378_tpm_fwd AorticSmsToIL1b_06hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep2 (LK59)_CNhs13378_12759-136B5_forward 1 99 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12759-136B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep2%20%28LK59%29.CNhs13378.12759-136B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep2 (LK59)_CNhs13378_12759-136B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12759-136B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_06hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep2LK59_CNhs13378_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12759-136B5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep2LK59_CNhs13378_ctss_fwd AorticSmsToIL1b_06hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep2 (LK59)_CNhs13378_12759-136B5_forward 0 99 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12759-136B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep2%20%28LK59%29.CNhs13378.12759-136B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep2 (LK59)_CNhs13378_12759-136B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12759-136B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_06hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep2LK59_CNhs13378_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12759-136B5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF960ZGP GM12878 CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM12878 from ENCODE 3 (ENCFF960ZGP) 0 99 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM12878 from ENCODE 3 (ENCFF960ZGP)\ parent encTfChipPk off\ shortLabel GM12878 CTCF 2\ subGroups cellType=GM12878 factor=CTCF\ track encTfChipPkENCFF960ZGP\ chainHprcGCA_018504085v1 HG02080.mat chain GCA_018504085.1 HG02080.mat HG02080.pri.mat.f1_v2 (May 2021 GCA_018504085.1_HG02080.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 99 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02080.mat HG02080.pri.mat.f1_v2 (May 2021 GCA_018504085.1_HG02080.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504085.1\ parent hprcChainNetViewchain off\ priority 84\ shortLabel HG02080.mat\ subGroups view=chain sample=s084 population=eas subpop=khv hap=mat\ track chainHprcGCA_018504085v1\ type chain GCA_018504085.1\ wgEncodeRegDnaseUwHmecHotspot HMEC Ht bigBed 6 + HMEC mammary epithelium DNaseI Hotspots from ENCODE 0 99 255 112 85 255 183 170 1 0 0 regulation 1 color 255,112,85\ longLabel HMEC mammary epithelium DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HMEC Ht\ subGroups view=b_Hot cellType=HMEC treatment=n_a tissue=breast cancer=normal\ track wgEncodeRegDnaseUwHmecHotspot\ type bigBed 6 +\ est Human ESTs psl est Human ESTs Including Unspliced 0 100 0 0 0 127 127 127 1 0 0

    Description

    \

    \ This track shows alignments between human expressed sequence tags \ (ESTs) in GenBank and the genome. ESTs are single-read sequences, \ typically about 500 bases in length, that usually represent fragments of \ transcribed genes.

    \

    \ NOTE: As of April, 2007, we no longer include GenBank sequences \ that contain the following URL as part of the record:\

    \ http://fulllength.invitrogen.com\
    \ Some of these entries are the result of alignment to pseudogenes,\ followed by "correction" of the EST to match the genomic sequence. \ It is therefore not the sequence of the actual EST and makes it appear that \ the EST is transcribed. Invitrogen no longer sells the clones.\

    \ \

    Display Conventions and Configuration

    \

    \ This track follows the display conventions for \ PSL alignment tracks. In dense display mode, the items that\ are more darkly shaded indicate matches of better quality.

    \

    \ The strand information (+/-) indicates the\ direction of the match between the EST and the matching\ genomic sequence. It bears no relationship to the direction\ of transcription of the RNA with which it might be associated.

    \

    \ The description page for this track has a filter that can be used to change \ the display mode, alter the color, and include/exclude a subset of items \ within the track. This may be helpful when many items are shown in the track \ display, especially when only some are relevant to the current task.

    \

    \ To use the filter:\

      \
    1. Type a term in one or more of the text boxes to filter the EST\ display. For example, to apply the filter to all ESTs expressed in a specific\ organ, type the name of the organ in the tissue box. To view the list of \ valid terms for each text box, consult the table in the Table Browser that \ corresponds to the factor on which you wish to filter. For example, the \ "tissue" table contains all the types of tissues that can be \ entered into the tissue text box. Multiple terms may be entered at once, \ separated by a space. Wildcards may also be used in the\ filter.\
    2. If filtering on more than one value, choose the desired combination\ logic. If "and" is selected, only ESTs that match all filter \ criteria will be highlighted. If "or" is selected, ESTs that \ match any one of the filter criteria will be highlighted.\
    3. Choose the color or display characteristic that should be used to \ highlight or include/exclude the filtered items. If "exclude" is \ chosen, the browser will not display ESTs that match the filter criteria. \ If "include" is selected, the browser will display only those \ ESTs that match the filter criteria.\

    \

    \ This track may also be configured to display base labeling, a feature that\ allows the user to display all bases in the aligning sequence or only those \ that differ from the genomic sequence. For more information about this option,\ click \ here.\ Several types of alignment gap may also be colored; \ for more information, click \ here.\

    \ \

    Methods

    \

    \ To make an EST, RNA is isolated from cells and reverse\ transcribed into cDNA. Typically, the cDNA is cloned\ into a plasmid vector and a read is taken from the 5'\ and/or 3' primer. For most — but not all — ESTs, the\ reverse transcription is primed by an oligo-dT, which\ hybridizes with the poly-A tail of mature mRNA. The\ reverse transcriptase may or may not make it to the 5'\ end of the mRNA, which may or may not be degraded.

    \

    \ In general, the 3' ESTs mark the end of transcription\ reasonably well, but the 5' ESTs may end at any point\ within the transcript. Some of the newer cap-selected\ libraries cover transcription start reasonably well. Before the \ cap-selection techniques\ emerged, some projects used random rather than poly-A\ priming in an attempt to retrieve sequence distant from the\ 3' end. These projects were successful at this, but as\ a side effect also deposited sequences from unprocessed\ mRNA and perhaps even genomic sequences into the EST databases.\ Even outside of the random-primed projects, there is a\ degree of non-mRNA contamination. Because of this, a\ single unspliced EST should be viewed with considerable\ skepticism.

    \

    \ To generate this track, human ESTs from GenBank were aligned \ against the genome using blat. Note that the maximum intron length\ allowed by blat is 750,000 bases, which may eliminate some ESTs with very \ long introns that might otherwise align. When a single \ EST aligned in multiple places, the alignment having the \ highest base identity was identified. Only alignments having\ a base identity level within 0.5% of the best and at least 96% base identity \ with the genomic sequence were kept.

    \ \

    Credits

    \

    \ This track was produced at UCSC from EST sequence data\ submitted to the international public sequence databases by \ scientists worldwide.

    \ \

    References

    \

    \ Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.\ GenBank: update. Nucleic Acids Res.\ 2004 Jan 1;32(Database issue):D23-6.

    \

    \ Kent WJ.\ BLAT - The BLAST-Like Alignment Tool.\ Genome Res. 2002 Apr;12(4):656-64.

    \ rna 1 baseColorUseSequence genbank\ group rna\ indelDoubleInsert on\ indelQueryInsert on\ intronGap 30\ longLabel Human ESTs Including Unspliced\ maxItems 300\ shortLabel Human ESTs\ spectrum on\ table all_est\ track est\ type psl est\ visibility hide\ mrna Human mRNAs psl . Human mRNAs from GenBank 0 100 0 0 0 127 127 127 1 0 0

    Description

    \ \

    \ The mRNA track shows alignments between human mRNAs\ in \ GenBank and the genome.

    \ \

    Display Conventions and Configuration

    \ \

    \ This track follows the display conventions for\ \ PSL alignment tracks. In dense display mode, the items that\ are more darkly shaded indicate matches of better quality.\

    \ \

    \ The description page for this track has a filter that can be used to change\ the display mode, alter the color, and include/exclude a subset of items\ within the track. This may be helpful when many items are shown in the track\ display, especially when only some are relevant to the current task.\

    \ \

    \ To use the filter:\

      \
    1. Type a term in one or more of the text boxes to filter the mRNA\ display. For example, to apply the filter to all mRNAs expressed in a specific\ organ, type the name of the organ in the tissue box. To view the list of\ valid terms for each text box, consult the table in the Table Browser that\ corresponds to the factor on which you wish to filter. For example, the\ "tissue" table contains all the types of tissues that can be\ entered into the tissue text box. Multiple terms may be entered at once,\ separated by a space. Wildcards may also be used in the filter.
      2. \
    2. If filtering on more than one value, choose the desired combination\ logic. If "and" is selected, only mRNAs that match all filter\ criteria will be highlighted. If "or" is selected, mRNAs that\ match any one of the filter criteria will be highlighted.
      3. \
    3. Choose the color or display characteristic that should be used to\ highlight or include/exclude the filtered items. If "exclude" is\ chosen, the browser will not display mRNAs that match the filter criteria.\ If "include" is selected, the browser will display only those\ mRNAs that match the filter criteria.
      4. \
    \

    \ \

    \ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare mRNAs against the genomic sequence. For more\ information about this option, go to the\ \ Codon and Base Coloring for Alignment Tracks page.\ Several types of alignment gap may also be colored;\ for more information, go to the\ \ Alignment Insertion/Deletion Display Options page.\

    \ \

    Methods

    \ \

    \ GenBank human mRNAs were aligned against the genome using the\ blat program. When a single mRNA aligned in multiple places,\ the alignment having the highest base identity was found.\ Only alignments having a base identity level within 0.5% of\ the best and at least 96% base identity with the genomic sequence were kept.\

    \ \

    Credits

    \ \

    \ The mRNA track was produced at UCSC from mRNA sequence data\ submitted to the international public sequence databases by\ scientists worldwide.\

    \ \

    References

    \

    \ Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW.\ \ GenBank.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42.\ PMID: 23193287; PMC: PMC3531190\

    \ \

    \ Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.\ GenBank: update.\ Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6.\ PMID: 14681350; PMC: PMC308779\

    \ \

    \ Kent WJ.\ BLAT - the BLAST-like alignment tool.\ Genome Res. 2002 Apr;12(4):656-64.\ PMID: 11932250; PMC: PMC187518\

    \ rna 1 baseColorDefault diffCodons\ baseColorUseCds genbank\ baseColorUseSequence genbank\ group rna\ indelDoubleInsert on\ indelPolyA on\ indelQueryInsert on\ longLabel Human mRNAs from GenBank\ shortLabel Human mRNAs\ showDiffBasesAllScales .\ spectrum on\ table all_mrna\ track mrna\ type psl .\ visibility hide\ tgpTrios 1000 Genomes Trios vcfPhasedTrio Thousand Genomes Project Family VCF Trios 3 100 0 0 0 127 127 127 0 0 23 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX,

    Description

    \

    \ This track shows approximately 4.5 million single nucleotide variants (SNVs) and\ 0.6 million short insertions/deletions (indels) from 7 different parent/child trios as\ produced by the\ International\ Genome Sample Resource (IGSR), from sequence data generated by the\ 1000 Genomes Project\ in its Phase 3 sequencing of 2,504 genomes from 16 populations worldwide.

    \

    \ Variants were called on the autosomes (chromosomes 1 through 22) and on the\ Pseudo-Autosomal Regions (PARs) of chromosome X.\ Therefore this track has no annotations on alternate haplotype sequences, fix patches,\ chromosome Y, or the non-PAR portion (the majority) of chromosome X.\

    \

    \ The variant genotypes have been phased (i.e., the two alleles of each diploid genotype\ have been assigned to two\ haplotypes,\ one inherited from each parent). This information allows us to illustrate which\ haplotypes in the child have been inherited from which parent.\

    \ \

    Trios from six different populations are available, including:\

      \
    • YRI - Yoruban from Idaban, Nigeria
      • \
    • KHV - Kinh in Ho Chi Minh City, Vietnam
      • \
    • PUR - Puerto Ricans from Puerto Rico
      • \
    • CEU - CEPH Utah
      • \
    • CHS - Southern Han Chinese
      • \
    • MXL - Mexican Ancestry from Los Angeles
      • \
    \

    \ \

    Display Conventions and Configuration

    \

    \ This track illustrates the vcfPhasedTrio track type, where two lines, one for each chromosome\ in the diploid genome, is drawn per sample in the underlying VCF. Variants in the window\ are then drawn on the haplotype line corresponding to which haplotype they belong to, such that\ variants on the same line were likely inherited together. The sorting routine is the same as\ what is used to draw the haplotype sorted display in the non-trio 1000 Genomes track, and is\ described here.\

    \ \

    \ The child haplotypes are drawn in the center of each group, flanked above and below by\ parent haplotypes, and variants are sorted to show the transmitted alleles:\ 

    \
parent 1 untransmitted haploytpe \
parent 1 transmitted haplotype\
child haplotype inherited from parent 1\
child haplotype inherited from parent 2\
parent 2 transmitted haplotype\
parent 2 untransmitted haploytpe \
    \ \

    \ Track configuration options include:\

      \
    • Showing the child haplotypes below the parent(s)
      • \
    • Toggling the haplotype labels with mother/father/child or VCF sample IDs
      • \
    • Hiding the parent samples
      • \
    \

    \ \

    \ Allele coloring options include:\

      \
    • No shading - the default option
      • \
    • Shading by functional effect of the variant relative to NCBI RefSeq Curated Transcripts:\
      • reference alleles invisible
        • \
      • alternate alleles in red for non-synonymous
        • \
      • alternate alleles in green for synonymous
        • \
      • alternate alleles in blue for UTR/noncoding
        • \
      • alternate alleles in black otherwise
        • \
      \
      • \
    • Child de novo alleles in red - all alternate alleles black except for cases where the child has\ an allele not present in either parent
      • \
    • Child alleles that are "inconsistent" with phasing in red - all alternate alleles black except for cases where the "inherited" child allele does not match the "transmitted" parent allele. Note that as the genomic location changes, and thus the alleles present to use for sorting change, whether an allele is marked as inconsistent can change as well. Because all the variants present in the window are considered a haplotype, what haplotypes are considered "inherited" and "transmitted" varies as the viewing location changes
      • \
    \

    \ \

    \ From the subtrack configure menu, there is the option to manually rearrange \ the family order for each trio by dragging haplotypes. \

    \ \

    \ Clicking on a variant takes one to a details page with the standard VCF details, including\ INFO column annotations, the REF and ALT alleles, and the genotypes from all three samples.\

    \ \

    Methods

    \

    \ The genomes of 2,504 individuals were sequenced using both whole-genome sequencing\ (mean depth = 7.4x) and targeted exome sequencing (mean depth = 65.7x).\ Sequence reads were aligned to the reference genome using alt-aware BWA-MEM\ (Zheng-Bradley et al.).\ Variant discovery and quality control were performed as described in\ Lowy-Gallego et al.

    \

    \ See also:\

    \

    \ \

    UCSC Methods

    \

    \ Trio samples were extracted out of both the main 1000 Genomes set, and the\ related samples using the pedigree information from 1000\ Genomes. Variants that were homozygous reference across all three samples were removed.\

    \ \

    Data Access

    \

    \ Trio VCFs are available for download from\ our download server.\

    \ \

    Credits

    \

    \ Thanks to the\ International Genome Sample\ Resource (IGSR)\ for making these variant calls freely available.\

    \ \

    References

    \ \

    \ Zheng-Bradley X, Streeter I, Fairley S, Richardson D, Clarke L, Flicek P, 1000 Genomes Project\ Consortium.\ \ Alignment of 1000 Genomes Project reads to reference assembly GRCh38.\ Gigascience. 2017 Jul 1;6(7):1-8.\ PMID: 28531267; PMC: PMC5522380\

    \ \

    \ Fairley S, Lowy-Gallego E, Perry E, Flicek P.\ \ The International Genome Sample Resource (IGSR) collection of open human genomic variation\ resources.\ Nucleic Acids Res. 2019 Oct 4.\ PMID: 31584097\

    \ \

    \ Lowy-Gallego E, Fairley S, Zheng-Bradley X, Ruffier M, Clarke L, Flicek P,\ 1000 Genomes Project Consortium.\ \ Variant calling on the GRCh38 assembly with the data from phase three of the 1000 Genomes Project [version 1; peer review: 2 not approved].\ Wellcome Open Research. 2019 Mar. 11.\

    \ \

    \ 1000 Genomes Project Consortium, Auton A, Brooks LD, Durbin RM, Garrison EP, Kang HM, Korbel JO,\ Marchini JL, McCarthy S, McVean GA et al.\ \ A global reference for human genetic variation.\ Nature. 2015 Oct 1;526(7571):68-74.\ PMID: 26432245\

    \ varRep 0 chromosomes chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX\ compositeTrack on\ geneTrack ncbiRefSeqCurated\ html tgpTrios\ longLabel Thousand Genomes Project Family VCF Trios\ maxWindowToDraw 5000000\ parent tgpArchive\ shortLabel 1000 Genomes Trios\ track tgpTrios\ type vcfPhasedTrio\ vcfDoFilter off\ vcfDoMaf off\ vcfDoQual off\ vcfUseAltSampleNames on\ visibility pack\ tgpArchive 1000G Archive 1000 Genomes Archive 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This supertrack is a collection of tracks from the\ 1000 Genomes Project showing\ paired-end accessible regions and integrated variant calls. More information about display\ conventions, methods, credits, and references can be found on each subtrack's description page.\

    \

    \ For more details, see:

    \ \ \

    Credits

    \

    \ Thanks to the International Genome Sample Resource (IGSR) for making these variant calls\ freely available.

    \ varRep 0 cartVersion 2\ group varRep\ html ../tgpArchive\ longLabel 1000 Genomes Archive\ shortLabel 1000G Archive\ superTrack on\ track tgpArchive\ visibility hide\ tgpPhase3 1000G Ph3 Vars vcfTabix 1000 Genomes Phase 3 Integrated Variant Calls from IGSR: SNVs and Indels 0 100 0 0 0 127 127 127 0 0 23 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX,

    Description

    \

    \ This track shows approximately 73 million single nucleotide variants (SNVs) and\ 5 million short insertions/deletions (indels)\ produced by the\ International\ Genome Sample Resource (IGSR) from sequence data generated by the\ 1000 Genomes Project\ in its Phase 3 sequencing of 2,504 genomes from 16 populations worldwide.

    \

    \ Variants were called on the autosomes (chromosomes 1 through 22) and on the\ Pseudo-Autosomal Regions (PARs) of chromosome X.\ Therefore this track has no annotations on alternate haplotype sequences, fix patches,\ chromosome Y, or the non-PAR portion (the majority) of chromosome X.\

    \

    \ The variant genotypes have been phased\ (i.e., the two alleles of each diploid genotype have been assigned to two\ haplotypes,\ one inherited from each parent).\ This extra information enables a clustering of independent haplotypes\ by local similarity for display.\

    \ \

    Display Conventions

    \

    \ \ \ \ In "dense" mode, a vertical line is drawn at the position of each\ variant.\ In "pack" mode, since these variants have been phased, the\ display shows a clustering of haplotypes in the viewed range, sorted\ by similarity of alleles weighted by proximity to a central variant.\ The clustering view can highlight local patterns of linkage.

    \

    \ In the clustering display, each sample's phased diploid genotype is split\ into two independent haplotypes.\ Each haplotype is placed in a horizontal row of pixels; when the number of\ haplotypes exceeds the number of vertical pixels for the track, multiple\ haplotypes fall in the same pixel row and pixels are averaged across haplotypes.

    \

    \ Each variant is a vertical bar with white (invisible) representing the reference allele\ and black representing the non-reference allele(s).\ Tick marks are drawn at the top and bottom of each variant's vertical bar\ to make the bar more visible when most alleles are reference alleles.\ The vertical bar for the central variant used in clustering is outlined in purple.\ In order to avoid long compute times, the range of alleles used in clustering\ may be limited; alleles used in clustering have purple tick marks at the\ top and bottom.

    \

    \ The clustering tree is displayed to the left of the main image.\ It does not represent relatedness of individuals; it simply shows the arrangement\ of local haplotypes by similarity. When a rightmost branch is purple, it means\ that all haplotypes in that branch are identical, at least within the range of\ variants used in clustering.\

    \ \

    Methods

    \

    \ The genomes of 2,504 individuals were sequenced using both whole-genome sequencing\ (mean depth = 7.4x) and targeted exome sequencing (mean depth = 65.7x).\ Sequence reads were aligned to the reference genome using alt-aware BWA-MEM\ (Zheng-Bradley et al.).\ Variant discovery and quality control were performed as described in\ (Lowy-Gallego et al.).\ \ \ See also:\

    \

    \ \

    Data Access

    \

    \ VCF files were downloaded from\ EBI\ and are also available for download from\ UCSC.\

    \ \

    Credits

    \

    \ Thanks to the\ International Genome Sample\ Resource (IGSR)\ for making these variant calls freely available.\

    \ \

    References

    \ \

    \ Zheng-Bradley X, Streeter I, Fairley S, Richardson D, Clarke L, Flicek P, 1000 Genomes Project\ Consortium.\ \ Alignment of 1000 Genomes Project reads to reference assembly GRCh38.\ Gigascience. 2017 Jul 1;6(7):1-8.\ PMID: 28531267; PMC: PMC5522380\

    \ \

    \ Fairley S, Lowy-Gallego E, Perry E, Flicek P.\ \ The International Genome Sample Resource (IGSR) collection of open human genomic variation\ resources.\ Nucleic Acids Res. 2019 Oct 4.\ PMID: 31584097\

    \ \

    \ Lowy-Gallego E, Fairley S, Zheng-Bradley X, Ruffier M, Clarke L, Flicek P,\ 1000 Genomes Project Consortium.\ \ Variant calling on the GRCh38 assembly with the data from phase three of the 1000 Genomes Project [version 1; peer review: 2 not approved].\ Wellcome Open Research. 2019 Mar. 11.\

    \ \

    \ 1000 Genomes Project Consortium, Auton A, Brooks LD, Durbin RM, Garrison EP, Kang HM, Korbel JO,\ Marchini JL, McCarthy S, McVean GA et al.\ \ A global reference for human genetic variation.\ Nature. 2015 Oct 1;526(7571):68-74.\ PMID: 26432245\

    \ varRep 1 chromosomes chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX\ geneTrack ncbiRefSeqCurated\ html tgpPhase3\ longLabel 1000 Genomes Phase 3 Integrated Variant Calls from IGSR: SNVs and Indels\ maxWindowToDraw 5000000\ parent tgpArchive\ shortLabel 1000G Ph3 Vars\ showHardyWeinberg on\ track tgpPhase3\ type vcfTabix\ visibility hide\ consHprc90wayViewalign 90-way bed 4 Multiple Alignment on 90 human genome assemblies 3 100 0 0 0 127 127 127 0 0 0 hprc 1 longLabel Multiple Alignment on 90 human genome assemblies\ parent consHprc90way\ shortLabel 90-way\ track consHprc90wayViewalign\ view align\ viewUi on\ visibility pack\ abSplice AbSplice Scores bigBed 9 + Aberrant Splicing Prediction Scores 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ AbSplice is a method that predicts aberrant splicing across human tissues, as described in Wagner,\ Çelik et al., 2023. This track displays precomputed AbSplice scores for all possible\ single-nucleotide variants genome-wide. The scores represent the probability that a given variant\ causes aberrant splicing in a given tissue.\ AbSplice scores\ can be computed from VCF files and are based on quantitative tissue-specific splice site annotations\ (SpliceMaps).\ While SpliceMaps can be generated for any tissue of interest from a cohort of RNA-seq samples, this \ track includes 49 tissues available from the \ Genotype-Tissue\ Expression (GTEx) dataset.\

    \ \

    Display Conventions

    \

    \ The AbSplice score is a probability estimate of how likely aberrant splicing of some sort takes \ place in a given tissue. The authors suggest three cutoffs which are represented by color in the track.

    \ \
      \
    • High (red) - \ An AbSplice score over 0.2 indicates a high likelihood of aberrant splicing in at least one\ tissue.
      • \
    • Medium (orange) - \ A score between 0.05 and 0.2 indicates a medium likelihood.
      • \
    • Low (blue) - \ A score between 0.01 and 0.05 indicates a low likelihood.
      • \
    • Scores below 0.01 are not displayed.
      • \
    \

    \ \

    \ Mouseover on items shows the gene name, maximum score, and tissues that had this score. Clicking on\ any item brings up a table with scores for all 48 GTEX tissues.\

    \ \

    Data Access

    \

    \ The raw data can be explored interactively with the\ Table Browser, or the\ Data Integrator \ For automated analysis, the data may be queried from our\ REST API.\ Please refer to our\ mailing list archives\ for questions, or our\ Data Access FAQ\ for more information.\

    AbSplice scores are also available at the\ public repository created by the authors. \

    \ \

    Methods

    \

    \ Data was converted from the files (AbSplice_DNA_hg38_snvs_high_scores.zip) provided by the authors\ at zenodo.org. Files in the\ score_cutoff=0.01 directory were concatenated. To convert the data to bigBed format, scores and\ their tissues were selected from the AbSplice_DNA fields and maximum scores calculated using\ a custom\ script.\

    \ \

    Credits

    \

    \ Thanks to Nils Wagner for helpful comments and suggestions.

    \ \

    References

    \

    \ Wagner N, Çelik MH, Hölzlwimmer FR, Mertes C, Prokisch H, Yépez VA, Gagneur J.\ \ Aberrant splicing prediction across human tissues.\ Nat Genet. 2023 May;55(5):861-870.\ PMID: 37142848\

    \ phenDis 1 bigDataUrl /gbdb/hg38/abSplice/AbSplice.bb\ filter.spliceABscore 0.01\ filterLabel.maxScore Tissues\ filterLabel.spliceABscore Filter by minimum AbSplice score\ filterLimits.spliceABscore 0.01:1\ filterText.maxScore *\ group phenDis\ html abSplice\ itemRgb on\ longLabel Aberrant Splicing Prediction Scores\ mouseOver change: $name
    gene: $ENSGid
    max score: $spliceABscore
    $maxScore\ noScoreFilter on\ pennantIcon New red ../goldenPath/newsarch.html#030124 "Released Apr. 24, 2024"\ shortLabel AbSplice Scores\ track abSplice\ type bigBed 9 +\ visibility hide\ affyArchive Affy Archive psl . Affymetrix Archive 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This supertrack is a collection of Affymetrix tracks showing the location of the consensus and\ exemplar sequences used for the selection of probes on the Affymetrix chips.\

    \

    Credits

    \

    \ Thanks to\ Affymetrix for the data underlying these tracks.\

    \ expression 1 cartVersion 2\ group expression\ html ../affyArchive\ longLabel Affymetrix Archive\ shortLabel Affy Archive\ superTrack on\ track affyArchive\ type psl .\ visibility hide\ affyGnf1h Affy GNF1H psl . Alignments of Affymetrix Consensus/Exemplars from GNF1H 3 100 0 0 0 127 127 127 0 0 0

    Description

    This track shows the location of the sequences used for the selection of\ probes on the Affymetrix GNF1H chips. This contains 11406 predicted genes that do not overlap with\ the Affy U133A chip.

    \ \

    Methods

    The sequences were mapped to the genome using blat followed by pslReps with the\ parameters: 

    -minCover=0.3 -minAli=0.95 -nearTop=0.005

    \ \

    Credits

    Thanks to the Genomics\ Institute of the Novartis Research Foundation (GNF) for the data underlying this track.

    \ \

    References

    \

    \ Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G\ et al.\ \ A gene atlas of the mouse and human protein-encoding transcriptomes.\ Proc Natl Acad Sci U S A. 2004 Apr 20;101(16):6062-7.\ PMID: 15075390; PMC: PMC395923\

    \ expression 1 group expression\ longLabel Alignments of Affymetrix Consensus/Exemplars from GNF1H\ parent affyArchive\ shortLabel Affy GNF1H\ track affyGnf1h\ type psl .\ visibility pack\ affyU133 Affy U133 psl . Alignments of Affymetrix Consensus/Exemplars from HG-U133 3 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track shows the location of the consensus and exemplar sequences used \ for the selection of probes on the Affymetrix HG-U133A and HG-U133B chips.

    \ \

    Methods

    \

    \ Consensus and exemplar sequences were downloaded from the\ Affymetrix Product Support\ and mapped to the genome using blat followed by pslReps with the \ parameters: 

       -minCover=0.5 -minAli=0.97 -nearTop=0.005\

    \ \

    Credits

    \

    \ Thanks to Affymetrix for the data underlying this track.

    \ expression 1 group expression\ longLabel Alignments of Affymetrix Consensus/Exemplars from HG-U133\ parent affyArchive\ shortLabel Affy U133\ track affyU133\ type psl .\ visibility pack\ affyU95 Affy U95 psl . Alignments of Affymetrix Consensus/Exemplars from HG-U95 3 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track shows the location of the consensus and exemplar sequences used \ for the selection of probes on the Affymetrix HG-U95Av2 chip. For this chip, \ probes are predominantly designed from consensus sequences.

    \ \

    Methods

    \

    \ Consensus and exemplar sequences were downloaded from the\ Affymetrix Product Support\ and mapped to the genome using blat followed by pslReps with the \ parameters: 

       -minCover=0.3 -minAli=0.95 -nearTop=0.005\

    \ \

    Credits

    \

    \ Thanks to Affymetrix for the data underlying this track.

    \ expression 1 group expression\ longLabel Alignments of Affymetrix Consensus/Exemplars from HG-U95\ parent affyArchive\ shortLabel Affy U95\ track affyU95\ type psl .\ visibility pack\ altSeqLiftOverPsl Alt Haplotypes psl Reference Assembly Alternate Haplotype Sequence Alignments 3 100 0 0 100 127 127 177 0 0 0

    Description

    \ \

    \ This track shows alignments of alternate locus (also known as "alternate haplotype")\ reference sequences to main chromosome sequences in the reference genome assembly.\ Some loci in the genome are highly variable, with sets of variants that tend\ to segregate into distinct haplotypes.\ Only one haplotype can be included in a reference assembly chromosome sequence.\ Instead of providing a separate complete chromosome sequence for each haplotype,\ which could cause confusion with divergent chromosome coordinates and\ ambiguity about which sequence is the official reference, the\ Genome Reference Consortium\ (GRC) adds alternate locus sequences, ranging from tens of thousands of bases\ up to low millions of bases in size, to represent the distinct haplotypes. \

    \ \

    Display Conventions and Configuration

    \ \

    \ This track follows the display conventions for\ \ PSL alignment tracks.\ Mismatching bases are highlighted in red.\ Several types of alignment gap may also be colored;\ for more information, see\ \ Alignment Insertion/Deletion Display Options.\ \

    \ \

    Credits

    \

    \ The alignments were provided by NCBI as GFF files and translated into the PSL\ representation for browser display by UCSC.\

    \ map 1 baseColorDefault diffBases\ baseColorUseSequence db\ color 0,0,100\ group map\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Reference Assembly Alternate Haplotype Sequence Alignments\ pennantIcon p14 black https://genome-blog.gi.ucsc.edu/blog/patches/ "Includes annotations on GRCh38.p14 patch sequences"\ shortLabel Alt Haplotypes\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ track altSeqLiftOverPsl\ type psl\ visibility pack\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep2LK59_CNhs13378_tpm_rev AorticSmsToIL1b_06hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep2 (LK59)_CNhs13378_12759-136B5_reverse 1 100 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12759-136B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep2%20%28LK59%29.CNhs13378.12759-136B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep2 (LK59)_CNhs13378_12759-136B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12759-136B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_06hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep2LK59_CNhs13378_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12759-136B5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep2LK59_CNhs13378_ctss_rev AorticSmsToIL1b_06hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep2 (LK59)_CNhs13378_12759-136B5_reverse 0 100 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12759-136B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep2%20%28LK59%29.CNhs13378.12759-136B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep2 (LK59)_CNhs13378_12759-136B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12759-136B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_06hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep2LK59_CNhs13378_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12759-136B5\ urlLabel FANTOM5 Details:\ genotypeArrays Array Probesets bigBed 4 Microarray Probesets 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    Agilent Arrays

    \

    \ The arrays listed in this track are probes from the\ Agilent Catalog Oligonucleotide Microarrays.\

    \

    Please note that more microarray tracks are available on the hg19 genome assembly. \ To view those tracks, please \ click this link for hg19 microarrays.\ Microarrays that are not listed can be added as Custom Tracks with data from the companies.\

    \

    \ Agilent GenetiSure Cyto\

    \

    \ Agilent's oligonucleotide CGH (Comparative Genomic Hybridization) platform enables the\ study of genome-wide DNA copy number changes at a high resolution. The CGH probes on Agilent\ CGH microarrays are 60-mer oligonucleotides synthesized in situ using Agilent's inkjet\ SurePrint technology. The probes represented on the Agilent CGH microarrays have been\ selected using algorithms developed specifically for the CGH application, assuring optimal\ performance of these probes in detecting DNA copy number changes.\

    \ \

    Illumina 450k and 850k Methylation Arrays

    \

    \ With the Infinium MethylationEPIC BeadChip Kit, researchers can interrogate over 850,000\ methylation sites quantitatively across the genome at single-nucleotide resolution. Multiple\ samples, including FFPE, can be analyzed in parallel to deliver high-throughput power while\ minimizing the cost per sample. These tracks show positions being measured on the Illumina 450k and\ 850k (EPIC) microarray tracks. More information about the arrays can be found on the\ Infinium MethylationEPIC Kit website.\ \

    Illumina CytoSNP 850K Probe Array

    \

    \ The Infinium CytoSNP-850K v1.2 BeadChip provides comprehensive coverage of\ cytogenetically relevant genes on a proven platform, helping researchers find valuable information\ that may be missed by other technologies. It contains approximately 850,000 empirically selected\ single nucleotide polymorphisms (SNPs) spanning the entire genome with enriched coverage for 3,262\ genes of known cytogenetics relevance in both constitutional and cancer applications. \

    \ \

    Affymetrix Cytoscan HD GeneChip Array

    \

    \ The CytoScan HD Array, which is included in the\ CytoScan HD Suite, provides the broadest coverage and highest performance for\ detecting chromosomal aberrations. CytoScan HD Suite has greater than 99% sensitivity and can\ reliably detect 25-50kb copy number changes across the genome at high specificity with\ single-nucleotide polymorphism (SNP) allelic corroboration. With more than 2.6 million copy number\ markers, CytoScan HD Suite covers all OMIM and RefSeq genes.\

    \ \ \ \

    Display Conventions and Configuration

    \ \

    \ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

    \ \ \

    Methods

    \

    \ The Agilent arrays were downloaded from their \ Agilent SureDesign website tool on March 2022.

    \

    \ The Illumina 450k and 850k (EPIC) tracks were created using a few columns from the\ Infinium MethylationEPIC v1.0 B5 Manifest File (CSV Format)\ and was then converted into a bigBed.

    \

    \ The Illumina CytoSNP-850K track was created by downloading the\ CytoSNP-850K v1.2 Manifest File (CSV Format) (GRCh38) file and then converted\ into a bigBed file.\

    \

    \ The Affymetrix Cytoscan HD GeneChip Array track was created by converting the \ CytoScanHD_Accel_Array.na36.bed.zip\ into a bigBed file.\

    \ \

    Data Access

    \

    \ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated analysis, the data may be queried from our\ REST API \ or downloaded from our \ Downloads site. Please refer to our\ \ mailing list archives for questions, or our\ \ Data Access FAQ for more information.\

    \ \

    Credits

    \

    \ Thanks to the Aliglent and Illumina support teams for sharing the data and the UCSC Genome Browser\ engineers for configuring the data.

    \ varRep 1 compositeTrack on\ group varRep\ longLabel Microarray Probesets\ pennantIcon Updated red hgTrackUi?db=hg38&g=genotypeArrays "New Affy CytoScan HD track"\ shortLabel Array Probesets\ track genotypeArrays\ type bigBed 4\ visibility hide\ gold Assembly bed 3 + Assembly from Fragments 0 100 150 100 30 230 170 40 0 0 0

    Description

    \

    \ This track shows the contigs used to construct the GRCh38 (hg38) genome assembly, as defined in the\ AGP file delivered with the sequence. \ For information on the AGP file format, see the NCBI \ AGP Specification. The NCBI website also provides an \ overview of genome assembly procedures, as well as \ specific information about the hg38 assembly.\

    \

    \ In dense mode, this track depicts the contigs that make up the \ currently viewed scaffold. \ Contig boundaries are distinguished by the use of alternating gold and brown \ coloration. Where gaps\ exist between contigs, spaces are shown between the gold and brown\ blocks. The relative order and orientation of the contigs\ within a scaffold is always known; therefore, a line is drawn in the graphical\ display to bridge the blocks.

    \

    \ Component types found in this track (with counts of that type in parenthesis):\

      \
    • F - finished sequence (35,798)
      • \
    • O - other sequence (8,536)
      • \
    • W - whole genome shotgun (764)
      • \
    • P - pre draft (16)
      • \
    • D - draft sequence (8)
      • \
    • A - active finishing (8)
      • \

    \ \

    \ In addition to the standard nucleotide codes, the raw sequence files from NCBI also include\ IUPAC ambiguity codes for bases that could not be positively identified as A, C, G or T (see\ Wikipedia's IUPAC notation article for more information). As part of the UCSC\ assembly creation process, all IUPAC ambiguity characters are converted to Ns. The FASTA files\ available for download from UCSC reflect this. The raw data files containing the original IUPAC\ characters can be downloaded from the NCBI\ FTP site.\

    \ \

    \ The following table lists the counts by chromosome of the various IUPAC ambiguity characters\ in the original NCBI data files:\

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    chromosome
    12367910121316172122XYTotal
    code
    B112
    K14128
    M113128
    R111111313121127
    S111115
    W226111114
    Y43122822522235
    Total2971433633112355599
    \

    \ map 1 altColor 230,170,40\ color 150,100,30\ group map\ html gold\ longLabel Assembly from Fragments\ shortLabel Assembly\ track gold\ type bed 3 +\ visibility hide\ augustusGene AUGUSTUS genePred AUGUSTUS ab initio gene predictions v3.1 3 100 180 0 0 217 127 127 0 0 0

    Description

    \ \

    \ This track shows ab initio predictions from the program\ AUGUSTUS (version 3.1).\ The predictions are based on the genome sequence alone.\

    \ \

    \ For more information on the different gene tracks, see our Genes FAQ.

    \ \

    Methods

    \ \

    \ Statistical signal models were built for splice sites, branch-point\ patterns, translation start sites, and the poly-A signal.\ Furthermore, models were built for the sequence content of\ protein-coding and non-coding regions as well as for the length distributions\ of different exon and intron types. Detailed descriptions of most of these different models\ can be found in Mario Stanke's\ dissertation.\ This track shows the most likely gene structure according to a\ Semi-Markov Conditional Random Field model.\ Alternative splicing transcripts were obtained with\ a sampling algorithm (--alternatives-from-sampling=true --sample=100 --minexonintronprob=0.2\ --minmeanexonintronprob=0.5 --maxtracks=3 --temperature=2).\

    \ \

    \ The different models used by Augustus were trained on a number of different species-specific\ gene sets, which included 1000-2000 training gene structures. The --species option allows\ one to choose the species used for training the models. Different training species were used\ for the --species option when generating these predictions for different groups of\ assemblies.\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    Assembly GroupTraining Species
    Fishzebrafish\ \
    Birdschicken\ \
    Human and all other vertebrateshuman\ \
    Nematodescaenorhabditis
    Drosophilafly
    A. melliferahoneybee1
    A. gambiaeculex
    S. cerevisiaesaccharomyces
    \

    \ This table describes which training species was used for a particular group of assemblies.\ When available, the closest related training species was used.\

    \ \

    Credits

    \ \ Thanks to the\ Stanke lab\ for providing the AUGUSTUS program. The training for the chicken version was\ done by Stefanie König and the training for the\ human and zebrafish versions was done by Mario Stanke.\ \

    References

    \ \

    \ Stanke M, Diekhans M, Baertsch R, Haussler D.\ \ Using native and syntenically mapped cDNA alignments to improve de novo gene finding.\ Bioinformatics. 2008 Mar 1;24(5):637-44.\ PMID: 18218656\

    \ \

    \ Stanke M, Waack S.\ \ Gene prediction with a hidden Markov model and a new intron submodel.\ Bioinformatics. 2003 Oct;19 Suppl 2:ii215-25.\ PMID: 14534192\

    \ genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 180,0,0\ group genes\ html ../../augustusGene\ longLabel AUGUSTUS ab initio gene predictions v3.1\ parent genePredArchive\ shortLabel AUGUSTUS\ track augustusGene\ type genePred\ visibility pack\ avada Avada Variants bigBed 9 + Avada Variants extracted from full text publications 1 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ This track shows the genomic positions of variants in the\ AVADA database. \ AVADA is a database of variants built by a machine learning software\ that analyzes full text research articles to find the gene mentions in the text that \ look like they are most relevant for monogenic (non-cancer) genetic diagnosis, finds variant \ descriptions and uses the genes to map the variants to the genome. For details see the \ AVADA paper.\

    \

    As the data is automatically extracted from full-text publications, it includes \ some false positives. In the original study, out of 200 randomly selected articles,\ only 99 were considered relevant after manual curation. However, this share is very high\ compared to the Genomenom track. Ideally, the track is used\ in combination with variants found in human patients, to find relevant literature, \ or with Genome Browser tracks of variant databases that curated a single study \ for each variant, like our tracks for HGMD or LOVD.\

    \ \

    Display Conventions and Configuration

    \ \

    \ Genomic locations of a variants are labeled with the variant description\ in the original text. This is not a normalized HGVS string, but the original\ text as the authors of the study described it.\ The Pubmed ID, gene and transcript for each variant are shown on the\ variant's details page, as well as the PubMed title, authors, and abstract. \

    \

    \ Mouse over the variants to show the gene, variant, first author, year, and title.\

    \

    The data has been lifted from hg19 to hg38.

    \ \

    Data access

    \

    \ The raw data can be explored interactively with the Table Browser,\ for download, intersection or correlations with other tracks. To join this track with others\ based on the chromosome positions, use the Data Integrator.\ \

    \ For automated download and analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from\ our download server.\ The file for this track is called avada.bb. Individual\ regions or the whole genome annotation can be obtained using our tool bigBedToBed\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool\ can also be used to obtain only features within a given range, e.g. \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/bbi/avada.bb -chrom=chr21 -start=0 -end=100000000 stdout

    \

    \ \

    For automated access, this track like all others, is also available via our\ API. However, for bulk processing in\ pipelines, downloading the data and/or using bigBed files as described above is\ usually faster.

    \ \

    Methods

    \ \

    \ The AVADA VCF file was reformatted at UCSC to the bigBed format.\ The program that performs the conversion is available on\ Github. The paper reference information was added from\ MEDLINE and is used Courtesy of the U.S. National Library of Medicine, according \ to its \ Terms and Conditions.

    \ \

    Credits

    \

    \ Thanks to Gill Bejerano and Johannes Birgmeier for making the data available.\

    \ \

    References

    \

    \ Johannes Birgmeier, Cole A. Deisseroth, Laura E. Hayward, Luisa M. T. Galhardo, Andrew P. Tierno, Karthik A. Jagadeesh, Peter D. Stenson, David N. Cooper, Jonathan A. Bernstein, Maximilian Haeussler, and Gill Bejerano.\ \ AVADA: Towards Automated Pathogenic Variant Evidence Retrieval Directly from the Full Text Literature. .\ Genetics in Medicine. 2019.\ PMID: 31467448\

    \ phenDis 1 bigDataUrl /gbdb/hg38/bbi/avada.bb\ dataVersion release 1\ exonNumbers off\ longLabel Avada Variants extracted from full text publications\ mouseOverField _mouseOver\ noScoreFilter on\ parent varsInPubs pack\ shortLabel Avada Variants\ track avada\ type bigBed 9 +\ urls pmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" doi="https://doi.org/$$" ensId="http://grch37.ensembl.org/Homo_sapiens/Gene/Summary?g=$$" entrezs="https://www.ncbi.nlm.nih.gov/gene/$$" refSeq="https://www.ncbi.nlm.nih.gov/nuccore/$$"\ visibility dense\ cons470wayViewphyloP Basewise Conservation (phyloP) bed 4 Multiz Alignment & Conservation (470 mammals) 2 100 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Multiz Alignment & Conservation (470 mammals)\ parent cons470way\ shortLabel Basewise Conservation (phyloP)\ track cons470wayViewphyloP\ view phyloP\ viewLimits -20.0:11.936\ viewLimitsMax -20:11.936\ visibility full\ cons447wayViewphyloP Basewise Conservation (phyloP) bed 4 Cactus Alignment & Conservation on 447 mammal species, including Zoonomia genomes 2 100 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Cactus Alignment & Conservation on 447 mammal species, including Zoonomia genomes\ parent cons447way\ shortLabel Basewise Conservation (phyloP)\ track cons447wayViewphyloP\ view phyloP\ viewLimits -20.0:11.936\ visibility full\ bismap Bismap bigWig Single-read and multi-read mappability after bisulfite conversion 2 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ These tracks indicate regions with uniquely mappable reads of particular lengths before and after\ bisulfite conversion. Both Umap and Bismap tracks contain single-read mappability and multi-read\ mappability tracks for four different read lengths: 24 bp, 36 bp, 50 bp, and 100 bp.

    \

    \ You can use these tracks for many purposes, including filtering unreliable signal from\ sequencing assays. The Bismap track can help filter unreliable signal from sequencing assays\ involving bisulfite conversion, such as whole-genome bisulfite sequencing or reduced representation\ bisulfite sequencing.

    \ \ \

    Bismap single-read and multi-read mappability

    \
    \
    Bismap single-read mappability
    \
    \

    These tracks mark any region of the bisulfite-converted genome that is uniquely mappable by\ at least one k-mer on the specified strand. Mappability of the forward strand was\ generated by converting all instances of cytosine to thymine. Similarly, mappability of the\ reverse strand was generated by converting all instances of guanine to adenine.

    \

    To calculate the single-read mappability, you must find the overlap of a given region with\ the region that is uniquely mappable on both strands. Regions not uniquely mappable on both\ strands or have a low multi-read mappability might bias the downstream analysis.

    \
    Bismap multi-read mappability
    \
    \

    These tracks represent the probability that a randomly selected k-mer which overlaps\ with a given position is uniquely mappable. Multi-read mappability track is calculated for\ k-mers that are uniquely mappable on both strands, and thus there is no strand\ specification.

    \
    \ \ \

    Umap single-read and multi-read mappability

    \
    \
    Umap single-read mappability
    \
    \

    These tracks mark any region of the genome that is uniquely mappable by at least one\ k-mer. To calculate the single-read mappability, you must find the overlap of a given\ region with this track.

    \
    Umap multi-read mappability
    \
    \

    These tracks represent the probability that a randomly selected k-mer which overlaps\ with a given position is uniquely mappable.

    \
    \ \

    For greater detail and explanatory diagrams, see the\ preprint, the\ Umap and Bismap project website, or the\ Umap and Bismap software\ documentation.\ \

    Data Access

    \

    \ The raw data can be explored interactively with the Table Browser, or the Data Integrator. For automated analysis, genome annotation is stored in a bigBed\ or bigWig file that can be downloaded from the\ download\ server. Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed or bigWigToWig, which can be compiled from the source code or\ downloaded as a precompiled binary for your system. Instructions for downloading source code and\ binaries can be found here.\ The tool can also be used to obtain only features within a given range, for example:

    \ bigBedToBed -chrom=chr6 -start=0 -end=1000000\ http://hgdownload.soe.ucsc.edu/gbdb/hg38/hoffmanMappability/k24.Unique.Mappability.bb stdout\
    \ bigWigToWig -chrom=chr6 -start=0 -end=1000000\ http://hgdownload.soe.ucsc.edu/gbdb/hg38/hoffmanMappability/k24.Umap.MultiTrackMappability.bw\ stdout\

    \ Please refer to our mailing list archives for questions, or our\ Data Access FAQ for more\ information.

    \ \

    Credits

    \

    \ Anshul Kundaje (Stanford\ University) created the original Umap software in MATLAB. The original Umap repository is available\ here.\ Mehran Karimzadeh (Michael Hoffman\ lab, Princess Margaret Cancer Centre) implemented the Python version of Umap and added features,\ including Bismap.

    \ \

    References

    \

    \ Karimzadeh M, Ernst C, Kundaje A, Hoffman MM.,\ Umap and Bismap:\ quantifying genome and methylome mappability\ bioRxiv bioRxiv, p. 095463, 2016.; doi: https://doi.org/10.1101/095463.

    \ map 0 compositeTrack on\ group map\ html mappability\ longLabel Single-read and multi-read mappability after bisulfite conversion\ noInherit on\ parent mappability\ shortLabel Bismap\ subGroup1 view Views SR=Single-read MR=Multi-read\ track bismap\ type bigWig\ visibility full\ bloodHao Blood (PBMC) Hao Peripheral blood mononuclear cells (PBMC) from Hao et al 2020 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track displays data from Integrated analysis of\ multimodal single-cell data. Human peripheral blood mononuclear cells\ (PBMCs) taken from pre-vaccinated and post-vaccinated individuals were profiled\ using both CITE-seq and ECCITE-seq. A total of 57 cell type clusters were\ identified and each cluster included cells from all 24 samples with rare\ exceptions. This dataset contains three annotations for cell clustering: Level\ 1 (8 cell types), Level 2 (30 cell types), Level 3 (57 cell types).

    \ \

    \ This track collection contains six bar chart tracks of RNA expression in PBMCs\ where cells are grouped by cell type level 1 \ (Blood PBMC Cells), cell type level 2 \ (Blood PBMC Cells 2), \ cell type level 3 (Blood PBMC Cells 3), donor \ (Blood PBMC Donor), phase of cell cycle \ (Blood PBMC Phase), or time into experiment \ (Blood PBMC Time). The default track displayed \ is Blood PBMC Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \
    ColorCell classification
    immune
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.

    \ \

    Method

    \

    \ PBMC samples were taken from 8 volunteers ages 20-49 enrolled in an HIV\ vaccine trial (NCT01578889). A total of 24 blood samples were collected at 3\ time points: day 0 (the day before), day 3, and day 7 after the administration\ of a VSV-vectored HIV vaccine. Samples were collected at these different time\ points to minimize batch effects. Cells were then divided into separate\ aliquots for modified versions of the 3' CITE-seq and 5' ECCITE-seq staining\ protocols. In the 3' CITE-seq staining protocol, the samples are simultaneously\ stained with the antibody and unique hashtag. Whereas, 5' ECCITE-seq samples\ are stained first with a unique hashtag. 3' libraries were loaded into 8 lanes\ of a 10x Genomics Chip B using the 10x Genomics 3' v3 kit. 5' libraries\ were loaded into 2 lanes of a 10x Genomics Chip A using the 10x Genomics V(D)J\ kit (v1). Both 3' and 5' libraries were pooled together and sequenced on an\ Illumina Novaseq S4 flowcell. In total, 210,911 cells were profiled after \ quality control and doublet filtration.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell \ Browser. The UCSC command line utility matrixClusterColumns, matrixToBarChart, \ and bedToBigBed were used to transform these into a bar chart format bigBed file \ that can be visualized. The coloring was done by defining colors for the broad \ level cell classes and then using another UCSC utility, hcaColorCells, to interpolate \ the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Yuhan Hao, Stephanie Hao, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Hao Y, Hao S, Andersen-Nissen E, Mauck WM 3rd, Zheng S, Butler A, Lee MJ, Wilk AJ, Darby C, Zager M\ et al.\ \ Integrated analysis of multimodal single-cell data.\ Cell. 2021 Jun 24;184(13):3573-3587.e29.\ PMID: 34062119; PMC: PMC8238499\

    \ singleCell 0 group singleCell\ longLabel Peripheral blood mononuclear cells (PBMC) from Hao et al 2020\ shortLabel Blood (PBMC) Hao\ superTrack on\ track bloodHao\ visibility hide\ bloodHaoCellType Blood PBMC Cells bigBarChart Blood (PBMCs) binned by cell type (level 1) from Hao et al 2020 3 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=multimodal-pbmc+sct&gene=$$

    Description

    \

    \ This track displays data from Integrated analysis of\ multimodal single-cell data. Human peripheral blood mononuclear cells\ (PBMCs) taken from pre-vaccinated and post-vaccinated individuals were profiled\ using both CITE-seq and ECCITE-seq. A total of 57 cell type clusters were\ identified and each cluster included cells from all 24 samples with rare\ exceptions. This dataset contains three annotations for cell clustering: Level\ 1 (8 cell types), Level 2 (30 cell types), Level 3 (57 cell types).

    \ \

    \ This track collection contains six bar chart tracks of RNA expression in PBMCs\ where cells are grouped by cell type level 1 \ (Blood PBMC Cells), cell type level 2 \ (Blood PBMC Cells 2), \ cell type level 3 (Blood PBMC Cells 3), donor \ (Blood PBMC Donor), phase of cell cycle \ (Blood PBMC Phase), or time into experiment \ (Blood PBMC Time). The default track displayed \ is Blood PBMC Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \
    ColorCell classification
    immune
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.

    \ \

    Method

    \

    \ PBMC samples were taken from 8 volunteers ages 20-49 enrolled in an HIV\ vaccine trial (NCT01578889). A total of 24 blood samples were collected at 3\ time points: day 0 (the day before), day 3, and day 7 after the administration\ of a VSV-vectored HIV vaccine. Samples were collected at these different time\ points to minimize batch effects. Cells were then divided into separate\ aliquots for modified versions of the 3' CITE-seq and 5' ECCITE-seq staining\ protocols. In the 3' CITE-seq staining protocol, the samples are simultaneously\ stained with the antibody and unique hashtag. Whereas, 5' ECCITE-seq samples\ are stained first with a unique hashtag. 3' libraries were loaded into 8 lanes\ of a 10x Genomics Chip B using the 10x Genomics 3' v3 kit. 5' libraries\ were loaded into 2 lanes of a 10x Genomics Chip A using the 10x Genomics V(D)J\ kit (v1). Both 3' and 5' libraries were pooled together and sequenced on an\ Illumina Novaseq S4 flowcell. In total, 210,911 cells were profiled after \ quality control and doublet filtration.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell \ Browser. The UCSC command line utility matrixClusterColumns, matrixToBarChart, \ and bedToBigBed were used to transform these into a bar chart format bigBed file \ that can be visualized. The coloring was done by defining colors for the broad \ level cell classes and then using another UCSC utility, hcaColorCells, to interpolate \ the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Yuhan Hao, Stephanie Hao, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Hao Y, Hao S, Andersen-Nissen E, Mauck WM 3rd, Zheng S, Butler A, Lee MJ, Wilk AJ, Darby C, Zager M\ et al.\ \ Integrated analysis of multimodal single-cell data.\ Cell. 2021 Jun 24;184(13):3573-3587.e29.\ PMID: 34062119; PMC: PMC8238499\

    \ singleCell 1 barChartBars B_cell T_cell_CD4+ T_cell_CD8+ dendritic_cell_(DC) monocyte natural_killer_cell_(NK) other T_cell_other\ barChartColors #fe3247 #fe3248 #fe3248 #e92812 #e02900 #fb2e3e #f01111 #fe3247\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/bloodHao/cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/bloodHao/cell_type.bb\ defaultLabelFields name\ html bloodHao\ longLabel Blood (PBMCs) binned by cell type (level 1) from Hao et al 2020\ parent bloodHao\ shortLabel Blood PBMC Cells\ track bloodHaoCellType\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=multimodal-pbmc+sct&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility pack\ bloodHaoL2 Blood PBMC Cells 2 bigBarChart Blood PBMCs binned by cell type (level 2) from Hao et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=multimodal-pbmc+sct&gene=$$

    Description

    \

    \ This track displays data from Integrated analysis of\ multimodal single-cell data. Human peripheral blood mononuclear cells\ (PBMCs) taken from pre-vaccinated and post-vaccinated individuals were profiled\ using both CITE-seq and ECCITE-seq. A total of 57 cell type clusters were\ identified and each cluster included cells from all 24 samples with rare\ exceptions. This dataset contains three annotations for cell clustering: Level\ 1 (8 cell types), Level 2 (30 cell types), Level 3 (57 cell types).

    \ \

    \ This track collection contains six bar chart tracks of RNA expression in PBMCs\ where cells are grouped by cell type level 1 \ (Blood PBMC Cells), cell type level 2 \ (Blood PBMC Cells 2), \ cell type level 3 (Blood PBMC Cells 3), donor \ (Blood PBMC Donor), phase of cell cycle \ (Blood PBMC Phase), or time into experiment \ (Blood PBMC Time). The default track displayed \ is Blood PBMC Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \
    ColorCell classification
    immune
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.

    \ \

    Method

    \

    \ PBMC samples were taken from 8 volunteers ages 20-49 enrolled in an HIV\ vaccine trial (NCT01578889). A total of 24 blood samples were collected at 3\ time points: day 0 (the day before), day 3, and day 7 after the administration\ of a VSV-vectored HIV vaccine. Samples were collected at these different time\ points to minimize batch effects. Cells were then divided into separate\ aliquots for modified versions of the 3' CITE-seq and 5' ECCITE-seq staining\ protocols. In the 3' CITE-seq staining protocol, the samples are simultaneously\ stained with the antibody and unique hashtag. Whereas, 5' ECCITE-seq samples\ are stained first with a unique hashtag. 3' libraries were loaded into 8 lanes\ of a 10x Genomics Chip B using the 10x Genomics 3' v3 kit. 5' libraries\ were loaded into 2 lanes of a 10x Genomics Chip A using the 10x Genomics V(D)J\ kit (v1). Both 3' and 5' libraries were pooled together and sequenced on an\ Illumina Novaseq S4 flowcell. In total, 210,911 cells were profiled after \ quality control and doublet filtration.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell \ Browser. The UCSC command line utility matrixClusterColumns, matrixToBarChart, \ and bedToBigBed were used to transform these into a bar chart format bigBed file \ that can be visualized. The coloring was done by defining colors for the broad \ level cell classes and then using another UCSC utility, hcaColorCells, to interpolate \ the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Yuhan Hao, Stephanie Hao, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Hao Y, Hao S, Andersen-Nissen E, Mauck WM 3rd, Zheng S, Butler A, Lee MJ, Wilk AJ, Darby C, Zager M\ et al.\ \ Integrated analysis of multimodal single-cell data.\ Cell. 2021 Jun 24;184(13):3573-3587.e29.\ PMID: 34062119; PMC: PMC8238499\

    \ singleCell 1 barChartBars ASDC B_intermediate B_memory B_naive CD14_Mono CD16_Mono CD4_CTL CD4_Naive CD4_Proliferating CD4_TCM CD4_TEM CD8_Naive CD8_Proliferating CD8_TCM CD8_TEM Doublet Eryth HSPC ILC MAIT NK NK_Proliferating NK_CD56bright Plasmablast Platelet Treg cDC1 cDC2 dnT gdT pDC\ barChartColors #f77170 #fe3246 #fe3246 #fe3246 #e02901 #e22803 #fd3145 #fe3248 #fb737b #fe3248 #fe3248 #fe3248 #fc737c #fe3248 #fd3145 #e22803 #fa9fa1 #fd7580 #fe7683 #fe3246 #fb2e3e #f82b36 #fd3043 #fc747d #f01212 #fe3248 #f77071 #e5270a #fe7685 #fe3145 #f72c34\ barChartLimit 3\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/bloodHao/celltype.l2.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/bloodHao/celltype.l2.bb\ defaultLabelFields name\ html bloodHao\ labelFields name,name2\ longLabel Blood PBMCs binned by cell type (level 2) from Hao et al 2020\ parent bloodHao\ shortLabel Blood PBMC Cells 2\ track bloodHaoL2\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=multimodal-pbmc+sct&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ bloodHaoL3 Blood PBMC Cells 3 bigBarChart Blood PBMCs binned by cell type (level 3) from Hao et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=multimodal-pbmc+sct&gene=$$

    Description

    \

    \ This track displays data from Integrated analysis of\ multimodal single-cell data. Human peripheral blood mononuclear cells\ (PBMCs) taken from pre-vaccinated and post-vaccinated individuals were profiled\ using both CITE-seq and ECCITE-seq. A total of 57 cell type clusters were\ identified and each cluster included cells from all 24 samples with rare\ exceptions. This dataset contains three annotations for cell clustering: Level\ 1 (8 cell types), Level 2 (30 cell types), Level 3 (57 cell types).

    \ \

    \ This track collection contains six bar chart tracks of RNA expression in PBMCs\ where cells are grouped by cell type level 1 \ (Blood PBMC Cells), cell type level 2 \ (Blood PBMC Cells 2), \ cell type level 3 (Blood PBMC Cells 3), donor \ (Blood PBMC Donor), phase of cell cycle \ (Blood PBMC Phase), or time into experiment \ (Blood PBMC Time). The default track displayed \ is Blood PBMC Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \
    ColorCell classification
    immune
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.

    \ \

    Method

    \

    \ PBMC samples were taken from 8 volunteers ages 20-49 enrolled in an HIV\ vaccine trial (NCT01578889). A total of 24 blood samples were collected at 3\ time points: day 0 (the day before), day 3, and day 7 after the administration\ of a VSV-vectored HIV vaccine. Samples were collected at these different time\ points to minimize batch effects. Cells were then divided into separate\ aliquots for modified versions of the 3' CITE-seq and 5' ECCITE-seq staining\ protocols. In the 3' CITE-seq staining protocol, the samples are simultaneously\ stained with the antibody and unique hashtag. Whereas, 5' ECCITE-seq samples\ are stained first with a unique hashtag. 3' libraries were loaded into 8 lanes\ of a 10x Genomics Chip B using the 10x Genomics 3' v3 kit. 5' libraries\ were loaded into 2 lanes of a 10x Genomics Chip A using the 10x Genomics V(D)J\ kit (v1). Both 3' and 5' libraries were pooled together and sequenced on an\ Illumina Novaseq S4 flowcell. In total, 210,911 cells were profiled after \ quality control and doublet filtration.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell \ Browser. The UCSC command line utility matrixClusterColumns, matrixToBarChart, \ and bedToBigBed were used to transform these into a bar chart format bigBed file \ that can be visualized. The coloring was done by defining colors for the broad \ level cell classes and then using another UCSC utility, hcaColorCells, to interpolate \ the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Yuhan Hao, Stephanie Hao, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Hao Y, Hao S, Andersen-Nissen E, Mauck WM 3rd, Zheng S, Butler A, Lee MJ, Wilk AJ, Darby C, Zager M\ et al.\ \ Integrated analysis of multimodal single-cell data.\ Cell. 2021 Jun 24;184(13):3573-3587.e29.\ PMID: 34062119; PMC: PMC8238499\

    \ singleCell 1 barChartBars ASDC_mDC ASDC_pDC B_intermediate_kappa B_intermediate_lambda B_memory_kappa B_memory_lambda B_naive_kappa B_naive_lambda CD14_Mono CD16_Mono CD4_CTL CD4_Naive CD4_Proliferating CD4_TCM_1 CD4_TCM_2 CD4_TCM_3 CD4_TEM_1 CD4_TEM_2 CD4_TEM_3 CD4_TEM_4 CD8_Naive CD8_Naive_2 CD8_Proliferating CD8_TCM_1 CD8_TCM_2 CD8_TCM_3 CD8_TEM_1 CD8_TEM_2 CD8_TEM_3 CD8_TEM_4 CD8_TEM_5 CD8_TEM_6 Doublet Eryth HSPC ILC MAIT NK_Proliferating NK_1 NK_2 NK_3 NK_4 NK_CD56bright Plasma Plasmablast Platelet Treg_Memory Treg_Naive cDC1 cDC2_1 cDC2_2 dnT_1 dnT_2 gdT_1 gdT_2 gdT_3 gdT_4 pDC\ barChartColors #fabfbc #fcc0c1 #fe3246 #fe3146 #fe3246 #fe3246 #fe3246 #fe3246 #e02901 #e22803 #fd3145 #fe3248 #fb737b #fe3248 #fd3145 #fe3248 #fe3247 #fe7785 #fe3248 #ffa4ad #fe3248 #fe7684 #fc737c #fe3248 #fe3248 #fe3248 #fe3247 #fd3144 #fe7684 #fc3042 #fc2f41 #fe3246 #e22803 #fa9fa1 #fd7580 #fe7683 #fe3246 #f82b36 #fb2e3e #fa2d3c #fc2f40 #fc2f41 #fd3043 #fc747d #fdc1c4 #f01212 #fe3248 #fe3248 #f77071 #e22804 #e8270f #ff7785 #fd7581 #fd3145 #fb2e3f #fe3248 #fc3042 #f72c34\ barChartLimit 3\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/bloodHao/celltype.l3.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/bloodHao/celltype.l3.bb\ defaultLabelFields name\ html bloodHao\ labelFields name,name2\ longLabel Blood PBMCs binned by cell type (level 3) from Hao et al 2020\ parent bloodHao\ shortLabel Blood PBMC Cells 3\ track bloodHaoL3\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=multimodal-pbmc+sct&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ bloodHaoDonor Blood PBMC Donor bigBarChart Blood PBMCs binned by blood donor from Hao et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=multimodal-pbmc+sct&gene=$$

    Description

    \

    \ This track displays data from Integrated analysis of\ multimodal single-cell data. Human peripheral blood mononuclear cells\ (PBMCs) taken from pre-vaccinated and post-vaccinated individuals were profiled\ using both CITE-seq and ECCITE-seq. A total of 57 cell type clusters were\ identified and each cluster included cells from all 24 samples with rare\ exceptions. This dataset contains three annotations for cell clustering: Level\ 1 (8 cell types), Level 2 (30 cell types), Level 3 (57 cell types).

    \ \

    \ This track collection contains six bar chart tracks of RNA expression in PBMCs\ where cells are grouped by cell type level 1 \ (Blood PBMC Cells), cell type level 2 \ (Blood PBMC Cells 2), \ cell type level 3 (Blood PBMC Cells 3), donor \ (Blood PBMC Donor), phase of cell cycle \ (Blood PBMC Phase), or time into experiment \ (Blood PBMC Time). The default track displayed \ is Blood PBMC Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \
    ColorCell classification
    immune
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.

    \ \

    Method

    \

    \ PBMC samples were taken from 8 volunteers ages 20-49 enrolled in an HIV\ vaccine trial (NCT01578889). A total of 24 blood samples were collected at 3\ time points: day 0 (the day before), day 3, and day 7 after the administration\ of a VSV-vectored HIV vaccine. Samples were collected at these different time\ points to minimize batch effects. Cells were then divided into separate\ aliquots for modified versions of the 3' CITE-seq and 5' ECCITE-seq staining\ protocols. In the 3' CITE-seq staining protocol, the samples are simultaneously\ stained with the antibody and unique hashtag. Whereas, 5' ECCITE-seq samples\ are stained first with a unique hashtag. 3' libraries were loaded into 8 lanes\ of a 10x Genomics Chip B using the 10x Genomics 3' v3 kit. 5' libraries\ were loaded into 2 lanes of a 10x Genomics Chip A using the 10x Genomics V(D)J\ kit (v1). Both 3' and 5' libraries were pooled together and sequenced on an\ Illumina Novaseq S4 flowcell. In total, 210,911 cells were profiled after \ quality control and doublet filtration.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell \ Browser. The UCSC command line utility matrixClusterColumns, matrixToBarChart, \ and bedToBigBed were used to transform these into a bar chart format bigBed file \ that can be visualized. The coloring was done by defining colors for the broad \ level cell classes and then using another UCSC utility, hcaColorCells, to interpolate \ the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Yuhan Hao, Stephanie Hao, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Hao Y, Hao S, Andersen-Nissen E, Mauck WM 3rd, Zheng S, Butler A, Lee MJ, Wilk AJ, Darby C, Zager M\ et al.\ \ Integrated analysis of multimodal single-cell data.\ Cell. 2021 Jun 24;184(13):3573-3587.e29.\ PMID: 34062119; PMC: PMC8238499\

    \ singleCell 1 barChartBars P1 P2 P3 P4 P5 P6 P7 P8\ barChartColors #fd3144 #fe3247 #fd3144 #fd3144 #f32b2b #f92e3a #f52c30 #fa2f3c\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/bloodHao/donor.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/bloodHao/donor.bb\ defaultLabelFields name\ html bloodHao\ labelFields name,name2\ longLabel Blood PBMCs binned by blood donor from Hao et al 2020\ parent bloodHao\ shortLabel Blood PBMC Donor\ track bloodHaoDonor\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=multimodal-pbmc+sct&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ bloodHaoPhase Blood PBMC Phase bigBarChart Blood PBMCs binned by phase of cell cycle from Hao et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=multimodal-pbmc+sct&gene=$$

    Description

    \

    \ This track displays data from Integrated analysis of\ multimodal single-cell data. Human peripheral blood mononuclear cells\ (PBMCs) taken from pre-vaccinated and post-vaccinated individuals were profiled\ using both CITE-seq and ECCITE-seq. A total of 57 cell type clusters were\ identified and each cluster included cells from all 24 samples with rare\ exceptions. This dataset contains three annotations for cell clustering: Level\ 1 (8 cell types), Level 2 (30 cell types), Level 3 (57 cell types).

    \ \

    \ This track collection contains six bar chart tracks of RNA expression in PBMCs\ where cells are grouped by cell type level 1 \ (Blood PBMC Cells), cell type level 2 \ (Blood PBMC Cells 2), \ cell type level 3 (Blood PBMC Cells 3), donor \ (Blood PBMC Donor), phase of cell cycle \ (Blood PBMC Phase), or time into experiment \ (Blood PBMC Time). The default track displayed \ is Blood PBMC Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \
    ColorCell classification
    immune
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.

    \ \

    Method

    \

    \ PBMC samples were taken from 8 volunteers ages 20-49 enrolled in an HIV\ vaccine trial (NCT01578889). A total of 24 blood samples were collected at 3\ time points: day 0 (the day before), day 3, and day 7 after the administration\ of a VSV-vectored HIV vaccine. Samples were collected at these different time\ points to minimize batch effects. Cells were then divided into separate\ aliquots for modified versions of the 3' CITE-seq and 5' ECCITE-seq staining\ protocols. In the 3' CITE-seq staining protocol, the samples are simultaneously\ stained with the antibody and unique hashtag. Whereas, 5' ECCITE-seq samples\ are stained first with a unique hashtag. 3' libraries were loaded into 8 lanes\ of a 10x Genomics Chip B using the 10x Genomics 3' v3 kit. 5' libraries\ were loaded into 2 lanes of a 10x Genomics Chip A using the 10x Genomics V(D)J\ kit (v1). Both 3' and 5' libraries were pooled together and sequenced on an\ Illumina Novaseq S4 flowcell. In total, 210,911 cells were profiled after \ quality control and doublet filtration.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell \ Browser. The UCSC command line utility matrixClusterColumns, matrixToBarChart, \ and bedToBigBed were used to transform these into a bar chart format bigBed file \ that can be visualized. The coloring was done by defining colors for the broad \ level cell classes and then using another UCSC utility, hcaColorCells, to interpolate \ the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Yuhan Hao, Stephanie Hao, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Hao Y, Hao S, Andersen-Nissen E, Mauck WM 3rd, Zheng S, Butler A, Lee MJ, Wilk AJ, Darby C, Zager M\ et al.\ \ Integrated analysis of multimodal single-cell data.\ Cell. 2021 Jun 24;184(13):3573-3587.e29.\ PMID: 34062119; PMC: PMC8238499\

    \ singleCell 1 barChartBars G1 G2M S\ barChartColors #e92913 #fd3144 #fe3247\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/bloodHao/Phase.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/bloodHao/Phase.bb\ defaultLabelFields name\ html bloodHao\ labelFields name,name2\ longLabel Blood PBMCs binned by phase of cell cycle from Hao et al 2020\ parent bloodHao\ shortLabel Blood PBMC Phase\ track bloodHaoPhase\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=multimodal-pbmc+sct&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ bloodHaoTime Blood PBMC Time bigBarChart Blood PBMCs binned by time into experiment from Hao et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=multimodal-pbmc+sct&gene=$$

    Description

    \

    \ This track displays data from Integrated analysis of\ multimodal single-cell data. Human peripheral blood mononuclear cells\ (PBMCs) taken from pre-vaccinated and post-vaccinated individuals were profiled\ using both CITE-seq and ECCITE-seq. A total of 57 cell type clusters were\ identified and each cluster included cells from all 24 samples with rare\ exceptions. This dataset contains three annotations for cell clustering: Level\ 1 (8 cell types), Level 2 (30 cell types), Level 3 (57 cell types).

    \ \

    \ This track collection contains six bar chart tracks of RNA expression in PBMCs\ where cells are grouped by cell type level 1 \ (Blood PBMC Cells), cell type level 2 \ (Blood PBMC Cells 2), \ cell type level 3 (Blood PBMC Cells 3), donor \ (Blood PBMC Donor), phase of cell cycle \ (Blood PBMC Phase), or time into experiment \ (Blood PBMC Time). The default track displayed \ is Blood PBMC Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \
    ColorCell classification
    immune
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.

    \ \

    Method

    \

    \ PBMC samples were taken from 8 volunteers ages 20-49 enrolled in an HIV\ vaccine trial (NCT01578889). A total of 24 blood samples were collected at 3\ time points: day 0 (the day before), day 3, and day 7 after the administration\ of a VSV-vectored HIV vaccine. Samples were collected at these different time\ points to minimize batch effects. Cells were then divided into separate\ aliquots for modified versions of the 3' CITE-seq and 5' ECCITE-seq staining\ protocols. In the 3' CITE-seq staining protocol, the samples are simultaneously\ stained with the antibody and unique hashtag. Whereas, 5' ECCITE-seq samples\ are stained first with a unique hashtag. 3' libraries were loaded into 8 lanes\ of a 10x Genomics Chip B using the 10x Genomics 3' v3 kit. 5' libraries\ were loaded into 2 lanes of a 10x Genomics Chip A using the 10x Genomics V(D)J\ kit (v1). Both 3' and 5' libraries were pooled together and sequenced on an\ Illumina Novaseq S4 flowcell. In total, 210,911 cells were profiled after \ quality control and doublet filtration.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell \ Browser. The UCSC command line utility matrixClusterColumns, matrixToBarChart, \ and bedToBigBed were used to transform these into a bar chart format bigBed file \ that can be visualized. The coloring was done by defining colors for the broad \ level cell classes and then using another UCSC utility, hcaColorCells, to interpolate \ the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Yuhan Hao, Stephanie Hao, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Hao Y, Hao S, Andersen-Nissen E, Mauck WM 3rd, Zheng S, Butler A, Lee MJ, Wilk AJ, Darby C, Zager M\ et al.\ \ Integrated analysis of multimodal single-cell data.\ Cell. 2021 Jun 24;184(13):3573-3587.e29.\ PMID: 34062119; PMC: PMC8238499\

    \ singleCell 1 barChartBars 0 3 7\ barChartColors #f92e3b #fc3043 #fc3041\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/bloodHao/time.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/bloodHao/time.bb\ defaultLabelFields name\ html bloodHao\ labelFields name,name2\ longLabel Blood PBMCs binned by time into experiment from Hao et al 2020\ parent bloodHao\ shortLabel Blood PBMC Time\ track bloodHaoTime\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=multimodal-pbmc+sct&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ cons447way Cactus 447-way bed 4 Cactus Alignment & Conservation on 447 mammal species, including Zoonomia genomes 0 100 0 0 0 127 127 127 0 0 0

    Data Access

    \

    \ Downloads for data in this track are available from the directory:\

    \

    \ \

    Display Conventions and Configuration

    \

    \ In full and pack display modes, conservation scores are displayed as a\ wiggle track (histogram) in which the height reflects the\ size of the score.\ The conservation wiggles can be configured in a variety of ways to\ highlight different aspects of the displayed information.\ Click the Graph configuration help link for an explanation\ of the configuration options.

    \

    \ Pairwise alignments of each species to the human genome are\ displayed below the conservation histogram as a grayscale density plot (in\ pack mode) or as a wiggle (in full mode) that indicates alignment quality.\ In dense display mode, conservation is shown in grayscale using\ darker values to indicate higher levels of overall conservation\ as scored by phastCons.

    \

    \ Checkboxes on the track configuration page allow selection of the\ species to include in the pairwise display.\ Note that excluding species from the pairwise display does not alter the\ the conservation score display.

    \

    \ To view detailed information about the alignments at a specific\ position, zoom the display in to 30,000 or fewer bases, then click on\ the alignment.

    \ \

    Gap Annotation

    \

    \ The Display chains between alignments configuration option\ enables display of gaps between alignment blocks in the pairwise alignments in\ a manner similar to the Chain track display. Missing sequence in any\ assembly is highlighted in the track display by regions of yellow when zoomed\ out and by Ns when displayed at base level. The following conventions are used:\

      \
    • Single line: No bases in the aligned species. Possibly due to a\ lineage-specific insertion between the aligned blocks in the human genome\ or a lineage-specific deletion between the aligned blocks in the aligning\ species.\
    • Double line: Aligning species has one or more unalignable bases in\ the gap region. Possibly due to excessive evolutionary distance between\ species or independent indels in the region between the aligned blocks in both\ species.\
    • Pale yellow coloring: Aligning species has Ns in the gap region.\ Reflects uncertainty in the relationship between the DNA of both species, due\ to lack of sequence in relevant portions of the aligning species.\

    \ \

    Genomic Breaks

    \

    \ Discontinuities in the genomic context (chromosome, scaffold or region) of the\ aligned DNA in the aligning species are shown as follows:\

      \
    • \ Vertical blue bar: Represents a discontinuity that persists indefinitely\ on either side, e.g. a large region of DNA on either side of the bar\ comes from a different chromosome in the aligned species due to a large scale\ rearrangement.\
    • \ Green square brackets: Enclose shorter alignments consisting of DNA from\ one genomic context in the aligned species nested inside a larger chain of\ alignments from a different genomic context. The alignment within the\ brackets may represent a short misalignment, a lineage-specific insertion of a\ transposon in the human genome that aligns to a paralogous copy somewhere\ else in the aligned species, or other similar occurrence.\

    \ \

    Base Level

    \

    \ When zoomed-in to the base-level display, the track shows the base\ composition of each alignment. The numbers and symbols on the Gaps\ line indicate the lengths of gaps in the human sequence at those\ alignment positions relative to the longest non-human sequence.\ If there is sufficient space in the display, the size of the gap is shown.\ If the space is insufficient and the gap size is a multiple of 3, a\ "*" is displayed; other gap sizes are indicated by "+".

    \

    \ Codon translation is available in base-level display mode if the\ displayed region is identified as a coding segment. To display this annotation,\ select the species for translation from the pull-down menu in the Codon\ Translation configuration section at the top of the page. Then, select one of\ the following modes:\

      \
    • \ No codon translation: The gene annotation is not used; the bases are\ displayed without translation.\
    • \ Use default species reading frames for translation: The annotations from\ the genome displayed in the Default species to establish reading frame\ pull-down menu are used to translate all the aligned species present in the\ alignment.\
    • \ Use reading frames for species if available, otherwise no translation:\ Codon translation is performed only for those species where the region is\ annotated as protein coding.\
    • Use reading frames for species if available, otherwise use default species:\ Codon translation is done on those species that are annotated as being protein\ coding over the aligned region using species-specific annotation; the remaining\ species are translated using the default species annotation.\

    \

    \ Codon translation uses the following gene tracks as the basis for translation:\

    \ \ \ \ \ \
    Gene TrackSpecies
    RefSeq GenesBos mutus, Canis lupus familiaris, Carlito syrichta, Cercocebus atys, Chinchilla lanigera, Colobus angolensis, Condylura cristata, Dipodomys ordii, Elephantulus edwardii, Eptesicus fuscus, Felis catus, Felis catus fca126, Fukomys damarensis, Homo sapiesn, Ictidomys tridecemlineatus, Macaca mulatta, Macaca nemestrina, Marmota marmota, Microtus ochrogaster, Miniopterus natalensis, Mus musculus, Mus pahari, Myotis brandtii, Myotis davidii, Myotis lucifugus, Odobenus rosmarus, Orcinus orca, Otolemur garnettii, Peromyscus maniculatus, Piliocolobus tephrosceles, Propithecus coquerelli, Pteropus alecto, Pteropus vampyrus, Rattus norvegicus, Rhinopithecus roxellana, Saimiri boliviensis, Sorex araneus, Sus scrofa, Theropithecus gelada, Tupaia chinensis
    Ensembl GenesCavia aperea
    Augustus GenesEidolon helvum, Pteronotus parnellii
    no annotationAcinonyx jubatus, Acomys cahirinus, Ailuropoda melanoleuca, Ailurus fulgens, Allactaga bullata, Allenopithecus nigroviridis, Allochrocebus lhoesti, Allochrocebus preussi, Allochrocebus solatus, Alouatta belzebul, Alouatta caraya, Alouatta discolor, Alouatta juara, Alouatta macconnelli, Alouatta nigerrima, Alouatta palliata, Alouatta puruensis, Alouatta seniculus, Ammotragus lervia, Anoura caudifer, Antilocapra americana, Aotus azarae, Aotus griseimembra, Aotus nancymaae, Aotus trivirgatus, Aotus vociferans, Aplodontia rufa, Arctocebus calabarensis, Artibeus jamaicensis, Ateles geoffroyi_a, Ateles geoffroyi_b, Ateles belzebuth, Ateles chamek, Ateles marginatus, Ateles paniscus, Avahi laniger, Avahi peyrierasi, Balaenoptera acutorostrata, Balaenoptera bonaerensis, Beatragus hunteri, Bison bison, Bos indicus, Bos taurus, Bubalus bubalis, Cacajao ayresi, Cacajao calvus, Cacajao hosomi, Cacajao melanocephalus, Callibella humilis, Callimico goeldii, Callithrix geoffroyi, Callithrix jacchus, Callithrix kuhlii, Camelus bactrianus, Camelus dromedarius, Camelus ferus, Canis lupus VD, Canis lupus dingo, Canis lupus orion, Capra aegagrus, Capra hircus, Capromys pilorides, Carollia perspicillata, Castor canadensis, Catagonus wagneri, Cavia porcellus, Cavia tschudii, Cebuella niveiventris, Cebuella pygmaea, Cebus albifrons, Cebus olivaceus, Cebus unicolor, Cephalopachus bancanus, Ceratotherium simum, Ceratotherium simum cottoni, Cercocebus chrysogaster, Cercocebus lunulatus, Cercocebus torquatus, Cercopithecus ascanius, Cercopithecus cephus, Cercopithecus diana, Cercopithecus hamlyni, Cercopithecus lowei, Cercopithecus albogularis, Cercopithecus mona, Cercopithecus neglectus, Cercopithecus nictitans, Cercopithecus petaurista, Cercopithecus pogonias, Cercopithecus roloway, Chaetophractus vellerosus, Cheirogaleus major, Cheirogaleus medius, Cheracebus lucifer, Cheracebus lugens, Cheracebus regulus, Cheracebus torquatus, Chiropotes albinasus, Chiropotes israelita, Chiropotes sagulatus, Chlorocebus aethiops, Chlorocebus pygerythrus, Chlorocebus sabaeus, Choloepus didactylus, Choloepus hoffmanni, Chrysochloris asiatica, Colobus guereza, Colobus polykomos, Craseonycteris thonglongyai, Cricetomys gambianus, Cricetulus griseus, Crocidura indochinensis, Cryptoprocta ferox, Ctenodactylus gundi, Ctenomys sociabilis, Cuniculus paca, Dasyprocta punctata, Dasypus novemcinctus, Daubentonia madagascariensis, Delphinapterus leucas, Desmodus rotundus, Dicerorhinus sumatrensis, Diceros bicornis, Dinomys branickii, Dipodomys stephensi, Dolichotis patagonum, Echinops telfairi, Elaphurus davidianus, Ellobius lutescens, Ellobius talpinus, Enhydra lutris, Equus asinus, Equus caballus, Equus przewalskii, Erinaceus europaeus, Erythrocebus patas, Eschrichtius robustus, Eubalaena japonica, Eulemur albifrons, Eulemur collaris, Eulemur coronatus, Eulemur flavifrons, Eulemur fulvus, Eulemur macaco, Eulemur mongoz, Eulemur rubriventer, Eulemur rufus, Eulemur sanfordi, Felis nigripes, Galago moholi, Galago senegalensis, Galagoides demidoff, Galeopterus variegatus, Giraffa tippelskirchi, Glis glis, Gorilla beringei, Gorilla gorilla, Graphiurus murinus, Hapalemur alaotrensis, Hapalemur gilberti, Hapalemur griseus, Hapalemur meridionalis, Hapalemur occidentalis, Helogale parvula, Hemitragus hylocrius, Heterocephalus glaber, Heterohyrax brucei, Hippopotamus amphibius, Hipposideros armiger, Hipposideros galeritus, Hoolock leuconedys, Hyaena hyaena, Hydrochoerus hydrochaeris, Hylobates abbotti, Hylobates agilis, Hylobates klossii, Hylobates pileatus, Hylobates muelleri, Hylobates pileatus, Hystrix cristata, Indri indri, Inia geoffrensis, Jaculus jaculus, Kogia breviceps, Lagothrix lagothricha, Lasiurus borealis, Lemur catta, Leontocebus fuscicollis, Leontocebus illigeri, Leontocebus nigricollis, Leontopithecus chrysomelas, Leontopithecus rosalia, Lepilemur ankaranensis, Lepilemur dorsalis, Lepilemur ruficaudatus, Lepilemur septentrionalis, Leptonychotes weddellii, Lepus americanus, Lipotes vexillifer, Lophocebus aterrimus, Loris lydekkerianus, Loris tardigradus, Loxodonta africana, Lycaon pictus, Macaca arctoides, Macaca assamensis, Macaca cyclopis, Macaca fascicularis, Macaca fuscata, Macaca leonina, Macaca maura, Macaca nigra, Macaca radiata, Macaca siberu, Macaca silenus, Macaca thibetana, Macaca tonkeana, Macroglossus sobrinus, Mandrillus leucophaeus, Mandrillus sphinx, Manis javanica, Manis pentadactyla, Megaderma lyra, Mellivora capensis, Meriones unguiculatus, Mesocricetus auratus, Mesoplodon bidens, Mico argentatus, Mico humeralifer, Mico schneideri, Microcebus murinus, Microgale talazaci, Micronycteris hirsuta, Miniopterus schreibersii, Miopithecus ogouensis, Mirounga angustirostris, Mirza zaza, Monodon monoceros, Mormoops blainvillei, Moschus moschiferus, Mungos mungo, Murina feae, Mus caroli, Mus spretus, Muscardinus avellanarius, Mustela putorius, Myocastor coypus, Myotis myotis, Myrmecophaga tridactyla, Nannospalax galili, Nasalis larvatus, Neomonachus schauinslandi, Neophocaena asiaeorientalis, Noctilio leporinus, Nomascus annamensis, Nomascus concolor, Nomascus gabriellae, Nomascus siki_a, Nomascus siki_b, Nyctereutes procyonoides, Nycticebus bengalensis, Nycticebus coucang, Nycticebus pygmaeus, Ochotona princeps, Octodon degus, Odocoileus virginianus, Okapia johnstoni, Ondatra zibethicus, Onychomys torridus, Orycteropus afer, Oryctolagus cuniculus, Otocyon megalotis, Otolemur crassicaudatus, Ovis aries, Ovis canadensis, Pan paniscus, Pan troglodytes, Panthera onca, Panthera pardus, Panthera tigris, Pantholops hodgsonii, Papio anubis, Papio cynocephalus, Papio hamadryas, Papio kindae, Papio papio, Papio ursinus, Paradoxurus hermaphroditus, Perodicticus ibeanus, Perodicticus potto, Perognathus longimembris, Petromus typicus, Phocoena phocoena, Piliocolobus badius, Piliocolobus gordonorum, Piliocolobus kirkii, Pipistrellus pipistrellus, Pithecia albicans, Pithecia chrysocephala, Pithecia hirsuta, Pithecia mittermeieri, Pithecia pissinattii, Pithecia pithecia, Pithecia vanzolinii, Platanista gangetica, Plecturocebus bernhardi, Plecturocebus brunneus, Plecturocebus caligatus, Plecturocebus cinerascens, Plecturocebus cupreus, Plecturocebus dubius, Plecturocebus grovesi, Plecturocebus hoffmannsi, Plecturocebus miltoni, Plecturocebus moloch, Pongo abelii, Pongo pygmaeus, Presbytis comata, Presbytis mitrata, Procavia capensis, Prolemur simus, Propithecus coronatus, Propithecus diadema, Propithecus edwardsi, Propithecus perrieri, Propithecus tattersalli, Propithecus verreauxi, Psammomys obesus, Pteronura brasiliensis, Puma concolor, Pygathrix cinerea, Pygathrix nigripes, Pygathrix nigripes, Rangifer tarandus, Rhinolophus sinicus, Rhinopithecus bieti, Rhinopithecus strykeri, Rousettus aegyptiacus, Saguinus bicolor, Saguinus geoffroyi, Saguinus imperator, Saguinus inustus, Saguinus labiatus, Saguinus midas, Saguinus mystax, Saguinus oedipus, Saiga tatarica, Saimiri cassiquiarensis, Saimiri macrodon, Saimiri oerstedii, Saimiri sciureus, Saimiri ustus, Sapajus apella, Sapajus macrocephalus, Scalopus aquaticus, Semnopithecus entellus, Semnopithecus hypoleucos, Semnopithecus johnii, Semnopithecus priam, Semnopithecus schistaceus, Semnopithecus vetulus, Sigmodon hispidus, Solenodon paradoxus, Spermophilus dauricus, Spilogale gracilis, Suricata suricatta, Symphalangus syndactylus, Tadarida brasiliensis, Tamandua tetradactyla, Tapirus indicus, Tapirus terrestris, Tarsius lariang, Tarsius wallacei, Thryonomys swinderianus, Tolypeutes matacus, Tonatia saurophila, Trachypithecus auratus, Trachypithecus crepusculus, Trachypithecus cristatus, Trachypithecus francoisi, Trachypithecus geei, Trachypithecus germaini, Trachypithecus hatinhensis, Trachypithecus laotum, Trachypithecus leucocephalus, Trachypithecus melamera, Trachypithecus obscurus, Trachypithecus phayrei, Trachypithecus pileatus, Tragulus javanicus, Trichechus manatus, Tupaia tana, Tursiops truncatus, Uropsilus gracilis, Ursus maritimus, Varecia rubra, Varecia variegata, Vicugna pacos, Vulpes lagopus, Xerus inauris, Zalophus californianus, Zapus hudsonius, Ziphius cavirostris\
    \ Table 2. Gene tracks used for codon translation.\

    \ \

    Methods

    \

    \ This alignment was created by making three edits (using Cactus) to the\ 241-way mammalian Zoonomia Cactus alignment\ (\ https://cglgenomics.ucsc.edu/data/cactus/).\

      \
    • One additional cat genome, "Felis_catus_fca126" (GCA_018350175.1) was\ added as a sister taxa to the existing "Felis_catus" species
      • \
    • Five additional canine genomes were also added: canFam4,\ "Canis_lupus_dingo" (GCA_003254725.1), "Canis_lupus_orion"\ (GCA_905319855.2), "Nyctereutes_procyonoides" (GCA_905146905.1) and\ "Otocyon_megalotis" (GCA_017311455.1). "Canis_lupus" from the Zoonomia\ alignment was also renamed "Canis_lupus_VD" to reflect the fact that it\ corresponds to a "village dog" and not "wolf" sample.
      • \
    • The 43-species primates clade from the Zoonomia alignment was removed\ and replaced with the 243-way primates alignment from Identification of\ constrained sequence elements across 239 primate genomes, increasing the alignment by 200\ additional primate species.
      • \
    \

    \ \

    Phylogenic tree

    \

    \ The phylogenic tree was established by the research described\ in A global catalog of whole-genome diversity from 233 primate\ species.\ \

    Sequences

    \

    \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    countcommon
    name    		cladescientific name
    (link to browser when existing)    		taxon id
    link to NCBI
    001humanprimates catarrhiniHomo sapiens/hg38
    reference species    		9606
    002western gorillaprimates catarrhiniGorilla gorilla
    GCA_900006655.3_Susie3    		9593
    003Sumatran orangutanprimates catarrhiniPongo abelii
    GCA_002880775.3_Susie_PABv2    		9601
    004Eastern Gorillaprimates catarrhiniGorilla beringei499232
    005chimpanzeeprimates catarrhiniPan troglodytes
    GCA_002880755.3_Clint_PTRv2    		9598
    006Bornean orangutanprimates catarrhiniPongo pygmaeus9600
    007Rhesus monkeyprimates catarrhiniMacaca mulatta
    rheMac10    		9544
    008geladaprimates catarrhiniTheropithecus gelada
    GCF_003255815.1_Tgel_1.0    		9565
    009stump-tailed macaqueprimates catarrhiniMacaca arctoides9540
    010Northern Talapoin Monkeyprimates catarrhiniMiopithecus ogouensis100488
    011crab-eating macaqueprimates catarrhiniMacaca fascicularis9541
    012Allen's swamp monkeyprimates catarrhiniAllenopithecus nigroviridis54135
    013siamangprimates catarrhiniSymphalangus syndactylus9590
    014black crested mangabeyprimates catarrhiniLophocebus aterrimus75566
    015drillprimates catarrhiniMandrillus leucophaeus9568
    016Bonnet Macaqueprimates catarrhiniMacaca radiata9548
    017Red-capped Mangabeyprimates catarrhiniCercocebus torquatus9530
    018Golden-bellied Mangabeyprimates catarrhiniCercocebus chrysogaster75569
    019Owl-faced Monkeyprimates catarrhiniCercopithecus hamlyni9536
    020Siberut Macaqueprimates catarrhiniMacaca siberu244255
    021pig-tailed macaqueprimates catarrhiniMacaca nemestrina
    GCF_000956065.1_Mnem_1.0    		9545
    022White-naped Mangabeyprimates catarrhiniCercocebus lunulatus (Cercocebus atys lunulatus)75570
    023Tonkean Macaqueprimates catarrhiniMacaca tonkeana40843
    024Diana Monkeyprimates catarrhiniCercopithecus diana36224
    025red guenonprimates catarrhiniErythrocebus patas9538
    026Northern Pig-tailed Macaqueprimates catarrhiniMacaca leonina90387
    027Moor Macaqueprimates catarrhiniMacaca maura90383
    028Guinea Baboonprimates catarrhiniPapio papio100937
    029hamadryas baboonprimates catarrhiniPapio hamadryas9557
    030liontail macaqueprimates catarrhiniMacaca silenus54601
    031olive baboonprimates catarrhiniPapio anubis
    GCA_000264685.2_Panu_3.0    		9555
    032Roloway Monkeyprimates catarrhiniCercopithecus roloway1137049
    033Kinda Baboonprimates catarrhiniPapio kindae208091
    034Chacma Baboonprimates catarrhiniPapio ursinus36229
    035Sun-tailed Monkeyprimates catarrhiniAllochrocebus solatus147650
    036golden snub-nosed monkeyprimates catarrhiniRhinopithecus roxellana
    GCF_007565055.1_ASM756505v1    		61622
    037Vervet Monkeyprimates catarrhiniChlorocebus pygerythrus60710
    038sooty mangabeyprimates catarrhiniCercocebus atys
    GCF_000955945.1_Caty_1.0    		9531
    039green monkeyprimates catarrhiniChlorocebus sabaeus
    GCA_000409795.2_Chlorocebus_sabeus_1.1    		60711
    040De Brazza's monkeyprimates catarrhiniCercopithecus neglectus36227
    041Yellow Baboonprimates catarrhiniPapio cynocephalus9556
    042Celebes crested macaqueprimates catarrhiniMacaca nigra54600
    043proboscis monkeyprimates catarrhiniNasalis larvatus43780
    044Preuss's Monkeyprimates catarrhiniAllochrocebus preussi147649
    045Putty-nosed Monkeyprimates catarrhiniCercopithecus nictitans36228
    046Javan Suriliprimates catarrhiniPresbytis comata78452
    047Sykes' Monkeyprimates catarrhiniCercopithecus albogularis36225
    048LHoests Monkeyprimates catarrhiniAllochrocebus lhoesti100224
    049Crowned Monkeyprimates catarrhiniCercopithecus pogonias102108
    050Southern Mitered Langurprimates catarrhiniPresbytis mitrata (Presbytis melalophos mitrata)272115
    051Grey-shanked Douc Langurprimates catarrhiniPygathrix cinerea693712
    052Mona monkeyprimates catarrhiniCercopithecus mona36226
    053Spot-nosed Monkeyprimates catarrhiniCercopithecus petaurista100487
    054grivetprimates catarrhiniChlorocebus aethiops9534
    055Lowes Monkeyprimates catarrhiniCercopithecus lowei304410
    056Northern Yellow-cheeked Crested Gibbonprimates catarrhiniNomascus annamensis1616038
    057Red-cheeked Gibbonprimates catarrhiniNomascus gabriellae61852
    058Japanese macaqueprimates catarrhiniMacaca fuscata9542
    059Western Red Colobusprimates catarrhiniPiliocolobus badius164648
    060southern white-cheeked gibbonprimates catarrhiniNomascus siki_a9586
    061Taiwan macaqueprimates catarrhiniMacaca cyclopis78449
    062black-shanked douc langurprimates catarrhiniPygathrix nigripes310352
    063King Colobusprimates catarrhiniColobus polykomos9572
    064Black Crested Gibbonprimates catarrhiniNomascus concolor29089
    065Udzungwa Red Colobusprimates catarrhiniPiliocolobus gordonorum591933
    066Gee's Golden Langurprimates catarrhiniTrachypithecus geei164650
    067Kloss's Gibbonprimates catarrhiniHylobates klossii9587
    068Spectacled Leaf Monkeyprimates catarrhiniTrachypithecus obscurus54181
    069Zanzibar Red Colobusprimates catarrhiniPiliocolobus kirkii591937
    070Indochinese Silvered Langurprimates catarrhiniTrachypithecus germaini271260
    071Hatinh Langurprimates catarrhiniTrachypithecus hatinhensis867383
    072Moustached Monkeyprimates catarrhiniCercopithecus cephus9535
    073Laotian Langurprimates catarrhiniTrachypithecus laotum465718
    074Francois's langurprimates catarrhiniTrachypithecus francoisi54180
    075Purple-faced Langurprimates catarrhiniSemnopithecus vetulus (Trachypithecus vetulus)54137
    076Capped Langurprimates catarrhiniTrachypithecus pileatus164651
    077Ugandan red Colobusprimates catarrhiniPiliocolobus tephrosceles
    GCF_002776525.2_ASM277652v2    		591936
    078Spangled Ebony Langurprimates catarrhiniTrachypithecus auratus222416
    079Red-tailed Monkeyprimates catarrhiniCercopithecus ascanius36223
    080Silvery Lutungprimates catarrhiniTrachypithecus cristatus122765
    081Nilgiri Langurprimates catarrhiniSemnopithecus johnii (Trachypithecus johnii)66063
    082Indochinese grey langurprimates catarrhiniTrachypithecus crepusculus (Trachypithecus phayrei crepuscula)272121
    083White-headed langurprimates catarrhiniTrachypithecus leucocephalus (Trachypithecus poliocephalus)465719
    084pygmy chimpanzeeprimates catarrhiniPan paniscus
    GCA_000258655.2_panpan1.1    		9597
    085northern white-cheeked gibbonprimates catarrhiniNomascus siki_b9586
    086Agile Gibbonprimates catarrhiniHylobates agilis9579
    087Phayre's Leaf-monkeyprimates catarrhiniTrachypithecus melameran/a
    088Nepal Gray Langurprimates catarrhiniSemnopithecus schistaceus2804203
    089Abbott's Gray Gibbonprimates catarrhiniHylobates abbotti (Hylobates muelleri abbotti)716694
    090Bornean Gibbonprimates catarrhiniHylobates muelleri9588
    091Tufted Gray Langurprimates catarrhiniSemnopithecus priam1208733
    092Black-footed Gray Langurprimates catarrhiniSemnopithecus hypoleucos1208734
    093mantled guerezaprimates catarrhiniColobus guereza33548
    094Hanuman langurprimates catarrhiniSemnopithecus entellus88029
    095pileated gibbonprimates catarrhiniHylobates pileatus9589
    096black snub-nosed monkeyprimates catarrhiniRhinopithecus bieti61621
    097Burmese snub-nosed monkeyprimates catarrhiniRhinopithecus strykeri1194336
    098Angolan colobusprimates catarrhiniColobus angolensis
    colAng1    		54131
    099Pileated Gibbonprimates catarrhiniHylobates pileatus9589
    100black-shanked douc langurprimates catarrhiniPygathrix nigripes310352
    101Milne-edwards' Macaqueprimates catarrhiniMacaca thibetana54602
    102Phayre's Leaf-monkeyprimates catarrhiniTrachypithecus phayrei61618
    103Assam macaqueprimates catarrhiniMacaca assamensis9551
    104Eastern hoolock gibbonprimates catarrhiniHoolock leuconedys61851
    105mandrillprimates catarrhiniMandrillus sphinx9561
    106White-faced Sakiprimates platyrrhiniPithecia chrysocephala2946515
    107Monk Sakiprimates platyrrhiniPithecia hirsuta2946516
    108white-faced sakiprimates platyrrhiniPithecia pithecia43777
    109Mittermeier's Tapajós sakiprimates platyrrhiniPithecia mittermeieri2946517
    110Buffy Sakiprimates platyrrhiniPithecia albicans2946514
    111Pissinatti's sakiprimates platyrrhiniPithecia pissinattii (Pithecia pissinatti)2946518
    112Vanzolini's Bald-faced Sakiprimates platyrrhiniPithecia vanzolinii2946519
    113Bald-headed Uacariprimates platyrrhiniCacajao calvus30596
    114Ayres Black Uakariprimates platyrrhiniCacajao ayresi535896
    115Black-headed Uacariprimates platyrrhiniCacajao melanocephalus70825
    116Black-headed Uacariprimates platyrrhiniCacajao hosomi535897
    117Reddish-brown bearded sakiprimates platyrrhiniChiropotes sagulatus (Chiropotes chiropotes)658221
    118brown-backed bearded sakiprimates platyrrhiniChiropotes israelita280163
    119Collared Titi Monkeyprimates platyrrhiniCheracebus lugens210166
    120Brown Titi Monkeyprimates platyrrhiniPlecturocebus brunneus1812042
    121Hoffmanns's titi monkeyprimates platyrrhiniPlecturocebus hoffmannsi78255
    122Milton's Titi Monkeyprimates platyrrhiniPlecturocebus miltoni1812038
    123Widow Monkeyprimates platyrrhiniCheracebus torquatus30592
    124Ashy Black Titi Monkeyprimates platyrrhiniPlecturocebus cinerascens1812037
    125Prince Bernhard's Titi Monkeyprimates platyrrhiniPlecturocebus bernhardi1812036
    126Yellow-handed Titi Monkeyprimates platyrrhiniCheracebus lucifer2487712
    127Coppery Titi Monkeyprimates platyrrhiniPlecturocebus cupreus202457
    128Chestnut-bellied Titiprimates platyrrhiniPlecturocebus caligatus867332
    129Hershkovitzs Titiprimates platyrrhiniPlecturocebus dubius2946520
    130Red-bellied Titi Monkeyprimates platyrrhiniPlecturocebus moloch9523
    131Groves' Titiprimates platyrrhiniPlecturocebus grovesi2488670
    132black-handed spider monkeyprimates platyrrhiniAteles geoffroyi_a9509
    133Widow Monkeyprimates platyrrhiniCheracebus regulus1812110
    134Guiana Spider Monkeyprimates platyrrhiniAteles paniscus9510
    135Black-faced Black Spider Monkeyprimates platyrrhiniAteles chamek118643
    136White-cheeked Spider Monkeyprimates platyrrhiniAteles marginatus1529884
    137White-bellied Spider Monkeyprimates platyrrhiniAteles belzebuth9507
    138Common Woolly Monkeyprimates platyrrhiniLagothrix lagothricha (Lagothrix lagotricha)9519
    139large-headed capuchinprimates platyrrhiniSapajus macrocephalus (Sapajus apella macrocephalus)1547595
    140Spixs White-fronted Capuchinprimates platyrrhiniCebus unicolor1985288
    141Central American spider monkeyprimates platyrrhiniAteles geoffroyi_b9509
    142Guinan Weeper Capuchinprimates platyrrhiniCebus olivaceus37295
    143mantled howler monkeyprimates platyrrhiniAlouatta palliata30589
    144white-fronted capuchinprimates platyrrhiniCebus albifrons9514
    145Northern Night Monkeyprimates platyrrhiniAotus trivirgatus9505
    146Grey-handed Night Monkeyprimates platyrrhiniAotus griseimembra292213
    147Black-and-gold Howler Monkeyprimates platyrrhiniAlouatta caraya9502
    148Spixs Night Monkeyprimates platyrrhiniAotus vociferans57176
    149Red-handed Howler Monkeyprimates platyrrhiniAlouatta belzebul30590
    150Red-handed Howler Monkeyprimates platyrrhiniAlouatta discolor2905217
    151Azara's Night Monkeyprimates platyrrhiniAotus azarae (Aotus azarai)30591
    152Purús Red Howler Monkeyprimates platyrrhiniAlouatta puruensis (Alouatta seniculus puruensis)1347729
    153Black Howler Monkeyprimates platyrrhiniAlouatta nigerrima (Alouatta belzebul)30590
    154Guianan Red Howler Monkeyprimates platyrrhiniAlouatta macconnelli198115
    155Colombian Red Howler Monkeyprimates platyrrhiniAlouatta juara2946512
    156Colombian Red Howler Monkeyprimates platyrrhiniAlouatta seniculus9503
    157tufted capuchinprimates platyrrhiniSapajus apella9515
    158Ma's night monkeyprimates platyrrhiniAotus nancymaae
    GCA_000952055.2_Anan_2.0    		37293
    159Bolivian squirrel monkeyprimates platyrrhiniSaimiri boliviensis
    GCF_016699345.1_BCM_Sbol_2.0    		27679
    160White-nosed Sakiprimates platyrrhiniChiropotes albinasus198627
    161Black Mantle Tamarinprimates platyrrhiniLeontocebus nigricollis9489
    162brown-mantled tamarinprimates platyrrhiniLeontocebus fuscicollis9487
    163Illiger's saddle-back tamarinprimates platyrrhiniLeontocebus illigeri (Leontocebus fuscicollis illigeri)881947
    164Cotton-headed Tamarinprimates platyrrhiniSaguinus oedipus9490
    165Pied Tamarinprimates platyrrhiniSaguinus bicolor37588
    166Geoffroy's Tamarinprimates platyrrhiniSaguinus geoffroyi43778
    167White-fronted Titi Monkeyprimates platyrrhiniSaguinus inustus1079039
    168Moustached Tamarinprimates platyrrhiniSaguinus mystax9488
    169tamarinprimates platyrrhiniSaguinus imperator9491
    170Guianan Squirrel Monkeyprimates platyrrhiniSaimiri sciureus9521
    171Red-chested Mustached Tamarinprimates platyrrhiniSaguinus labiatus78454
    172Goeldi's Monkeyprimates platyrrhiniCallimico goeldii9495
    173Black-crowned Central American Squirrel Monkeyprimates platyrrhiniSaimiri oerstedii70928
    174Golden-headed Lion Tamarinprimates platyrrhiniLeontopithecus chrysomelas57374
    175golden lion tamarinprimates platyrrhiniLeontopithecus rosalia30588
    176Humboldt's Squirrel Monkeyprimates platyrrhiniSaimiri cassiquiarensis2946521
    177bare-eared squirrel monkeyprimates platyrrhiniSaimiri ustus66265
    178Ecuadorian squirrel monkeyprimates platyrrhiniSaimiri macrodon2946522
    179white-tufted-ear marmosetprimates platyrrhiniCallithrix jacchus9483
    180Eastern Pygmy Marmosetprimates platyrrhiniCebuella niveiventris2826950
    181Western Pygmy Marmosetprimates platyrrhiniCebuella pygmaea9493
    182Black And White Tassel-ear Marmosetprimates platyrrhiniMico humeralifer52232
    183Black-crowned Dwarf Marmosetprimates platyrrhiniCallibella humilis (Mico humilis)666519
    184Mico schneideriprimates platyrrhiniMico schneiderin/a
    185Silvery Marmosetprimates platyrrhiniMico argentatus9482
    186Midas tamarinprimates platyrrhiniSaguinus midas30586
    187Wieds Marmosetprimates platyrrhiniCallithrix kuhlii867363
    188Geoffroy's Tufted-ear Marmosetprimates platyrrhiniCallithrix geoffroyi52231
    189Horsfield's tarsierprimates tarsiidaeCephalopachus bancanus9477
    190Philippine tarsierprimates tarsiidaeCarlito syrichta
    tarSyr2    		1868482
    191Lariang Tarsierprimates tarsiidaeTarsius lariang630277
    192Wallace's Tarsierprimates tarsiidaeTarsius wallacei981131
    193aye-ayeprimates strepsirrhiniDaubentonia madagascariensis31869
    194Crowned Sifakaprimates strepsirrhiniPropithecus coronatus (Propithecus deckenii coronatus)475619
    195Perrier's Sifakaprimates strepsirrhiniPropithecus perrieri989338
    196ruffed lemurprimates strepsirrhiniVarecia variegata9455
    197Diademed Sifakaprimates strepsirrhiniPropithecus diadema83281
    198Milne-Edwards Sifakaprimates strepsirrhiniPropithecus edwardsi543559
    199babakotoprimates strepsirrhiniIndri indri34827
    200Golden-crowned Sifakaprimates strepsirrhiniPropithecus tattersalli30601
    201Eastern Woolly Lemurprimates strepsirrhiniAvahi laniger122246
    202Verreauxs Sifakaprimates strepsirrhiniPropithecus verreauxi34825
    203Peyrieras Woolly Lemurprimates strepsirrhiniAvahi peyrierasi1313323
    204Red Ruffed Lemurprimates strepsirrhiniVarecia rubra554167
    205greater bamboo lemurprimates strepsirrhiniProlemur simus1328070
    206Red-bellied Lemurprimates strepsirrhiniEulemur rubriventer34829
    207mongoose lemurprimates strepsirrhiniEulemur mongoz34828
    208Geoffroys Dwarf Lemurprimates strepsirrhiniCheirogaleus major47177
    209Crowned Lemurprimates strepsirrhiniEulemur coronatus13514
    210black lemurprimates strepsirrhiniEulemur macaco30602
    211lesser dwarf lemurprimates strepsirrhiniCheirogaleus medius9460
    212Sclater's lemurprimates strepsirrhiniEulemur flavifrons87288
    213Coquerel's sifakaprimates strepsirrhiniPropithecus coquerelli (Propithecus coquereli)
    proCoq1    		379532
    214Collared Brown Lemurprimates strepsirrhiniEulemur collaris (Eulemur fulvus collaris)47178
    215Red-tailed Sportive Lemurprimates strepsirrhiniLepilemur ruficaudatus78866
    216Red Brown Lemurprimates strepsirrhiniEulemur rufus859983
    217Sanfords Brown Lemurprimates strepsirrhiniEulemur sanfordi122225
    218White-fronted Lemurprimates strepsirrhiniEulemur albifrons1215604
    219Gray's Sportive Lemurprimates strepsirrhiniLepilemur dorsalis78583
    220brown lemurprimates strepsirrhiniEulemur fulvus13515
    221Sahafary Sportive Lemurprimates strepsirrhiniLepilemur septentrionalis78584
    222Sambirano Lesser Bamboo Lemurprimates strepsirrhiniHapalemur occidentalis867377
    223Alaotra Reed Lemurprimates strepsirrhiniHapalemur alaotrensis (Hapalemur griseus alaotrensis)122220
    224Eastern Lesser Bamboo Lemurprimates strepsirrhiniHapalemur griseus13557
    225Ankarana Sportive Lemurprimates strepsirrhiniLepilemur ankaranensis342401
    226ring-tailed lemurprimates strepsirrhiniLemur catta9447
    227gray bamboo lemurprimates strepsirrhiniHapalemur gilberti3043110
    228Rusty-gray Lesser Bamboo Lemurprimates strepsirrhiniHapalemur meridionalis3043112
    229Demidoffs Dwarf Galagoprimates strepsirrhiniGalagoides demidoff89672
    230northern giant mouse lemurprimates strepsirrhiniMirza zaza339999
    231gray mouse lemurprimates strepsirrhiniMicrocebus murinus
    GCA_000165445.3_Mmur_3.0    		30608
    232small-eared galagoprimates strepsirrhiniOtolemur garnettii
    otoGar3    		30611
    233Northern Lesser Galagoprimates strepsirrhiniGalago senegalensis9465
    234Thick-tailed Greater Galagoprimates strepsirrhiniOtolemur crassicaudatus9463
    235Grey Slender Lorisprimates strepsirrhiniLoris lydekkerianus300163
    236slender lorisprimates strepsirrhiniLoris tardigradus9468
    237West African Pottoprimates strepsirrhiniPerodicticus potto9472
    238East African Pottoprimates strepsirrhiniPerodicticus ibeanus (Perodicticus potto ibeanus)261737
    239Moholi bushbabyprimates strepsirrhiniGalago moholi30609
    240Pygmy Slow Lorisprimates strepsirrhiniNycticebus pygmaeus (Xanthonycticebus pygmaeus)101278
    241Bengal slow lorisprimates strepsirrhiniNycticebus bengalensis261741
    242Calabar Angwantiboprimates strepsirrhiniArctocebus calabarensis261739
    243slow lorisprimates strepsirrhiniNycticebus coucang9470
    244jaguarcarnivoraPanthera onca
    GCA_004023805.1_PanOnc_v1_BIUU    		9690
    245leopardcarnivoraPanthera pardus
    GCA_001857705.1_PanPar1.0    		9691
    246giant pandacarnivoraAiluropoda melanoleuca
    GCA_002007445.1_ASM200744v1    		9646
    247Hawaiian monk sealcarnivoraNeomonachus schauinslandi
    GCA_002201575.1_ASM220157v1    		29088
    248California sea lioncarnivoraZalophus californianus
    GCA_004024565.1_ZalCal_v1_BIUU    		9704
    249Greenland wolfcarnivoraCanis lupus orion
    GCA_905319855.2_mCanLor1.2    		2605939
    250Pacific walruscarnivoraOdobenus rosmarus
    odoRosDiv1    		9707
    251domestic cat (Fca126)carnivoraFelis catus fca126 (Felis catus)
    GCF_018350175.1_F.catus_Fca126_mat1.0    		9685
    252northern elephant sealcarnivoraMirounga angustirostris
    GCA_004023865.1_MirAng_v1_BIUU    		9716
    253domestic catcarnivoraFelis catus
    felCat8    		9685
    254domestic dog (BS72/Village Dog)carnivoraCanis lupus familiaris
    GCA_004027395.1_CanFam_VD_v1_BIUU
    255German Shepherd dog (Mischka)carnivoraCanis lupus familiaris (CanFam4) (Canis lupus familiaris)
    canFam4
    256dingocarnivoraCanis lupus dingo286419
    257raccoon dogcarnivoraNyctereutes procyonoides34880
    258fossacarnivoraCryptoprocta ferox94188
    259polar bearcarnivoraUrsus maritimus
    GCA_000687225.1_UrsMar_1.0    		29073
    260Asian palm civetcarnivoraParadoxurus hermaphroditus
    GCA_004024585.1_ParHer_v1_BIUU    		71117
    261African hunting dogcarnivoraLycaon pictus
    GCA_001887905.1_LycPicSAfr1.0    		9622
    262Arctic foxcarnivoraVulpes lagopus
    GCA_004023825.1_VulLag_v1_BIUU    		494514
    263dogcarnivoraCanis lupus familiaris
    GCF_000002285.3_CanFam3.1    		9615
    264striped hyenacarnivoraHyaena hyaena
    GCA_004023945.1_HyaHya_v1_BIUU    		95912
    265n/acarnivoraAcinonyx jubatus
    GCA_001443585.1_aciJub1    		32536
    266tigercarnivoraPanthera tigris
    GCA_000464555.1_PanTig1.0    		9694
    267Sea ottercarnivoraEnhydra lutris
    GCA_002288905.2_ASM228890v2    		34882
    268giant ottercarnivoraPteronura brasiliensis9672
    269bat-eared foxcarnivoraOtocyon megalotis9624
    270Weddell sealcarnivoraLeptonychotes weddellii
    GCA_000349705.1_LepWed1.0    		9713
    271Lesser pandacarnivoraAilurus fulgens
    GCA_002007465.1_ASM200746v1    		9649
    272ratelcarnivoraMellivora capensis
    GCA_004024625.1_MelCap_v1_BIUU    		9664
    273banded mongoosecarnivoraMungos mungo
    GCA_004023785.1_MunMun_v1_BIUU    		210652
    274dwarf mongoosecarnivoraHelogale parvula
    GCA_004023845.1_HelPar_v1_BIUU    		210647
    275meerkatcarnivoraSuricata suricatta
    GCA_004023905.1_SurSur_v1_BIUU    		37032
    276pumacarnivoraPuma concolor
    GCA_003327715.1_PumCon1.0    		9696
    277black-footed catcarnivoraFelis nigripes
    GCA_004023925.1_FelNig_v1_BIUU    		61379
    278European polecatcarnivoraMustela putorius
    GCA_000239315.1_MusPutFurMale1.0    		9668
    279western spotted skunkcarnivoraSpilogale gracilis
    GCA_004023965.1_SpiGra_v1_BIUU    		30551
    280Sumatran rhinoceroslaurasiatheriaDicerorhinus sumatrensis
    GCA_002844835.1_ASM284483v1    		89632
    281black rhinoceroslaurasiatheriaDiceros bicornis
    GCA_004027315.1_DicBicMic_v1_BIUU    		9805
    282Asiatic tapirlaurasiatheriaTapirus indicus
    GCA_004024905.1_TapInd_v1_BIUU    		9802
    283Brazilian tapirlaurasiatheriaTapirus terrestris
    GCA_004025025.1_TapTer_v1_BIUU    		9801
    284northern white rhinoceroslaurasiatheriaCeratotherium simum cottoni310713
    285asslaurasiatheriaEquus asinus
    GCA_001305755.1_ASM130575v1    		9793
    286Southern white rhinoceroslaurasiatheriaCeratotherium simum
    GCA_000283155.1_CerSimSim1.0    		9807
    287Przewalski's horselaurasiatheriaEquus przewalskii
    GCA_000696695.1_Burgud    		9798
    288horselaurasiatheriaEquus caballus
    GCA_000002305.1_EquCab2.0    		9796
    289Malayan pangolinlaurasiatheriaManis javanica
    GCA_001685135.1_ManJav1.0    		9974
    290Chinese pangolinlaurasiatheriaManis pentadactyla
    GCA_000738955.1_M_pentadactyla-1.1.1    		143292
    291Hispaniolan solenodonlaurasiatheriaSolenodon paradoxus79805
    292eastern molelaurasiatheriaScalopus aquaticus
    GCA_004024925.1_ScaAqu_v1_BIUU    		71119
    293gracile shrew molelaurasiatheriaUropsilus gracilis
    GCA_004024945.1_UroGra_v1_BIUU    		182669
    294star-nosed molelaurasiatheriaCondylura cristata
    GCF_000260355.1_ConCri1.0    		143302
    295western European hedgehoglaurasiatheriaErinaceus europaeus
    GCA_000296755.1_EriEur2.0    		9365
    296European shrewlaurasiatheriaSorex araneus
    sorAra2    		42254
    297Indochinese shrewlaurasiatheriaCrocidura indochinensis
    GCA_004027635.1_CroInd_v1_BIUU    		876679
    298Hoffmann's two-fingered slothxenarthraCholoepus hoffmanni
    GCA_000164785.2_C_hoffmanni-2.0.1    		9358
    299nine-banded armadilloxenarthraDasypus novemcinctus
    GCA_000208655.2_Dasnov3.0    		9361
    300giant anteaterxenarthraMyrmecophaga tridactyla
    GCA_004026745.1_MyrTri_v1_BIUU    		71006
    301southern tamanduaxenarthraTamandua tetradactyla
    GCA_004025105.1_TamTet_v1_BIUU    		48850
    302placentalsxenarthraTolypeutes matacus183749
    303southern two-toed slothxenarthraCholoepus didactylus
    GCA_004027855.1_ChoDid_v1_BIUU    		27675
    304screaming hairy armadilloxenarthraChaetophractus vellerosus
    GCA_004027955.1_ChaVel_v1_BIUU    		340076
    305North Pacific right whaleartiodactylaEubalaena japonica302098
    306grey whaleartiodactylaEschrichtius robustus9764
    307hippopotamusartiodactylaHippopotamus amphibius
    GCA_004027065.1_HipAmp_v1_BIUU    		9833
    308Minke whaleartiodactylaBalaenoptera acutorostrata
    GCA_000493695.1_BalAcu1.0    		9767
    309beluga whaleartiodactylaDelphinapterus leucas
    GCA_002288925.2_ASM228892v2    		9749
    310Antarctic minke whaleartiodactylaBalaenoptera bonaerensis
    GCA_000978805.1_ASM97880v1    		33556
    311boutuartiodactylaInia geoffrensis9725
    312harbor porpoiseartiodactylaPhocoena phocoena9742
    313narwhalartiodactylaMonodon monoceros
    GCA_004026685.1_MonMon_M_v1_BIUU    		40151
    314Yangtze River dolphinartiodactylaLipotes vexillifer
    GCA_000442215.1_Lipotes_vexillifer_v1    		118797
    315killer whaleartiodactylaOrcinus orca
    orcOrc1    		9733
    316Ganges River dolphinartiodactylaPlatanista gangetica118798
    317Yangtze finless porpoiseartiodactylaNeophocaena asiaeorientalis
    GCA_003031525.1_Neophocaena_asiaeorientalis_V1    		189058
    318Sowerby's beaked whaleartiodactylaMesoplodon bidens48745
    319alpacaartiodactylaVicugna pacos
    GCA_000767525.1_Vi_pacos_V1.0    		30538
    320Cuvier's beaked whale"artiodactylaZiphius cavirostris9760
    321Bactrian camelartiodactylaCamelus bactrianus
    GCA_000767855.1_Ca_bactrianus_MBC_1.0    		9837
    322Arabian camelartiodactylaCamelus dromedarius
    GCA_000767585.1_PRJNA234474_Ca_dromedarius_V1.0    		9838
    323wild Bactrian camelartiodactylaCamelus ferus
    GCA_000311805.2_CB1    		419612
    324pygmy sperm whaleartiodactylaKogia breviceps27615
    325Chacoan peccaryartiodactylaCatagonus wagneri
    GCA_004024745.1_CatWag_v1_BIUU    		51154
    326reindeerartiodactylaRangifer tarandus
    GCA_004026565.1_RanTarSib_v1_BIUU    		9870
    327Pere David's deerartiodactylaElaphurus davidianus
    GCA_002443075.1_Milu1.0    		43332
    328okapiartiodactylaOkapia johnstoni
    GCA_001660835.1_ASM166083v1    		86973
    329Masai giraffeartiodactylaGiraffa tippelskirchi
    GCA_001651235.1_ASM165123v1    		439328
    330Siberian musk deerartiodactylaMoschus moschiferus
    GCA_004024705.1_MosMos_v1_BIUU    		68415
    331water buffaloartiodactylaBubalus bubalis
    GCA_000471725.1_UMD_CASPUR_WB_2.0    		89462
    332cowartiodactylaBos taurus
    GCA_000003205.6_Btau_5.0.1    		9913
    333pronghornartiodactylaAntilocapra americana
    GCA_004027515.1_AntAmePen_v1_BIUU    		9891
    334white-tailed deerartiodactylaOdocoileus virginianus
    GCA_002102435.1_Ovir.te_1.0    		9874
    335aoudadartiodactylaAmmotragus lervia
    GCA_002201775.1_ALER1.0    		9899
    336bighorn sheepartiodactylaOvis canadensis
    GCA_004026945.1_OviCan_v1_BIUU    		37174
    337goatartiodactylaCapra hircus
    GCA_001704415.1_ARS1    		9925
    338Nilgiri tahrartiodactylaHemitragus hylocrius
    GCA_004026825.1_HemHyl_v1_BIUU    		330464
    339hirolaartiodactylaBeatragus hunteri
    GCA_004027495.1_BeaHun_v1_BIUU    		59527
    340wild yakartiodactylaBos mutus
    bosMut1    		72004
    341American bisonartiodactylaBison bison
    GCA_000754665.1_Bison_UMD1.0    		9901
    342sheepartiodactylaOvis aries
    GCA_000298735.2_Oar_v4.0    		9940
    343chiruartiodactylaPantholops hodgsonii
    GCA_000400835.1_PHO1.0    		59538
    344wild goatartiodactylaCapra aegagrus
    GCA_000978405.1_CapAeg_1.0    		9923
    345Java mouse-deerartiodactylaTragulus javanicus
    GCA_004024965.1_TraJav_v1_BIUU    		9849
    346pigartiodactylaSus scrofa
    susScr3    		9823
    347zebu cattleartiodactylaBos indicus
    GCA_000247795.2_Bos_indicus_1.0    		9915
    348common bottlenose dolphinartiodactylaTursiops truncatus
    GCA_001922835.1_NIST_Tur_tru_v1    		9739
    349Saiga antelopeartiodactylaSaiga tatarica
    GCA_004024985.1_SaiTat_v1_BIUU    		34875
    350Chinese rufous horseshoe batchiropteraRhinolophus sinicus
    GCA_001888835.1_ASM188883v1    		89399
    351black flying foxchiropteraPteropus alecto
    pteAle1    		9402
    352Cantor's roundleaf batchiropteraHipposideros galeritus58069
    353Egyptian rousettechiropteraRousettus aegyptiacus
    GCA_004024865.1_RouAeg_v1_BIUU    		9407
    354long-tongued fruit batchiropteraMacroglossus sobrinus326083
    355large flying foxchiropteraPteropus vampyrus
    GCF_000151845.1_Pvam_2.0    		132908
    356Brazilian free-tailed batchiropteraTadarida brasiliensis
    GCA_004025005.1_TadBra_v1_BIUU    		9438
    357great roundleaf batchiropteraHipposideros armiger
    GCA_001890085.1_ASM189008v1    		186990
    358straw-colored fruit batchiropteraEidolon helvum
    eidHel1    		77214
    359Antillean ghost-faced batchiropteraMormoops blainvillei
    GCA_004026545.1_MorMeg_v1_BIUU    		118852
    360tailed tailless batchiropteraAnoura caudifer
    GCA_004027475.1_AnoCau_v1_BIUU    		27642
    361common vampire batchiropteraDesmodus rotundus
    GCA_002940915.2_ASM294091v2    		9430
    362hairy big-eared batchiropteraMicronycteris hirsuta
    GCA_004026765.1_MicHir_v1_BIUU    		148065
    363stripe-headed round-eared batchiropteraTonatia saurophila
    GCA_004024845.1_TonSau_v1_BIUU    		171122
    364Seba's short-tailed batchiropteraCarollia perspicillata
    GCA_004027735.1_CarPer_v1_BIUU    		40233
    365Jamaican fruit-eating batchiropteraArtibeus jamaicensis
    GCA_004027435.1_ArtJam_v1_BIUU    		9417
    366Indian false vampirechiropteraMegaderma lyra
    GCA_004026885.1_MegLyr_v1_BIUU    		9413
    367Schreibers' long-fingered batchiropteraMiniopterus schreibersii
    GCA_004026525.1_MinSch_v1_BIUU    		9433
    368greater bulldog batchiropteraNoctilio leporinus
    GCA_004026585.1_NocLep_v1_BIUU    		94963
    369Natal long-fingered batchiropteraMiniopterus natalensis
    GCF_001595765.1_Mnat.v1    		291302
    370hog-nosed batchiropteraCraseonycteris thonglongyai
    GCA_004027555.1_CraTho_v1_BIUU    		208972
    371Parnell's mustached batchiropteraPteronotus parnellii
    ptePar1    		59476
    372greater mouse-eared batchiropteraMyotis myotis
    GCA_004026985.1_MyoMyo_v1_BIUU    		51298
    373Ashy-gray tube-nosed batchiropteraMurina feae (Murina aurata feae)
    GCA_004026665.1_MurFea_v1_BIUU    		1453894
    374David's myotischiropteraMyotis davidii
    myoDav1    		225400
    375Brandt's batchiropteraMyotis brandtii
    myoBra1    		109478
    376big brown batchiropteraEptesicus fuscus
    GCF_000308155.1_EptFus1.0    		29078
    377red batchiropteraLasiurus borealis
    GCA_004026805.1_LasBor_v1_BIUU    		258930
    378little brown batchiropteraMyotis lucifugus
    myoLuc2    		59463
    379common pipistrellechiropteraPipistrellus pipistrellus
    GCA_004026625.1_PipPip_v1_BIUU    		59474
    380African savanna elephantafrotheriaLoxodonta africana
    GCA_000001905.1_Loxafr3.0    		9785
    381Florida manateeafrotheriaTrichechus manatus
    GCA_000243295.1_TriManLat1.0    		9778
    382yellow-spotted hyraxafrotheriaHeterohyrax brucei
    GCA_004026845.1_HetBruBak_v1_BIUU    		77598
    383Cape rock hyraxafrotheriaProcavia capensis
    GCA_004026925.1_ProCapCap_v1_BIUU    		9813
    384aardvarkafrotheriaOrycteropus afer9818
    385Cape golden moleafrotheriaChrysochloris asiatica
    GCA_004027935.1_ChrAsi_v1_BIUU    		185453
    386Cape elephant shrewafrotheriaElephantulus edwardii
    eleEdw1    		28737
    387Talazac's shrew tenrecafrotheriaMicrogale talazaci (Nesogale talazaci)
    GCA_004026705.1_MicTal_v1_BIUU    		2583312
    388small Madagascar hedgehogafrotheriaEchinops telfairi
    GCA_000313985.1_EchTel2.0    		9371
    389Sunda flying lemureuarchontogliresGaleopterus variegatus
    GCA_004027255.1_GalVar_v1_BIUU    		482537
    390Chinese tree shreweuarchontogliresTupaia chinensis
    tupChi1    		246437
    391South African ground squirreleuarchontogliresXerus inauris
    GCA_004024805.1_XerIna_v1_BIUU    		234690
    392large tree shreweuarchontogliresTupaia tana70687
    393mountain beavereuarchontogliresAplodontia rufa
    GCA_004027875.1_AplRuf_v1_BIUU    		51342
    394Alpine marmoteuarchontogliresMarmota marmota
    GCF_001458135.1_marMar2.1    		9993
    395Daurian ground squirreleuarchontogliresSpermophilus dauricus
    GCA_002406435.1_ASM240643v1    		99837
    396crested porcupineeuarchontogliresHystrix cristata
    GCA_004026905.1_HysCri_v1_BIUU    		10137
    397thirteen-lined ground squirreleuarchontogliresIctidomys tridecemlineatus
    speTri2    		43179
    398American beavereuarchontogliresCastor canadensis
    GCA_004027675.1_CasCan_v1_BIUU    		51338
    399long-tailed chinchillaeuarchontogliresChinchilla lanigera
    chiLan1    		34839
    400punctate agoutieuarchontogliresDasyprocta punctata34846
    401pacaranaeuarchontogliresDinomys branickii
    GCA_004027595.1_DinBra_v1_BIUU    		108858
    402fat dormouseeuarchontogliresGlis glis
    GCA_004027185.1_GliGli_v1_BIUU    		41261
    403northern gundieuarchontogliresCtenodactylus gundi
    GCA_004027205.1_CteGun_v1_BIUU    		10166
    404naked mole-rateuarchontogliresHeterocephalus glaber
    GCA_000247695.1_HetGla_female_1.0    		10181
    405Patagonian cavyeuarchontogliresDolichotis patagonum
    GCA_004027295.1_DolPat_v1_BIUU    		29091
    406capybaraeuarchontogliresHydrochoerus hydrochaeris
    GCA_004027455.1_HydHyd_v1_BIUU    		10149
    407Montane guinea pigeuarchontogliresCavia tschudii
    GCA_004027695.1_CavTsc_v1_BIUU    		143287
    408domestic guinea pigeuarchontogliresCavia porcellus
    GCA_000151735.1_Cavpor3.0    		10141
    409degueuarchontogliresOctodon degus
    GCA_000260255.1_OctDeg1.0    		10160
    410lowland pacaeuarchontogliresCuniculus paca108852
    411social tuco-tucoeuarchontogliresCtenomys sociabilis
    GCA_004027165.1_CteSoc_v1_BIUU    		43321
    412Damara mole-rateuarchontogliresFukomys damarensis
    fukDam1    		885580
    413woodland dormouseeuarchontogliresGraphiurus murinus51346
    414Desmarest's hutiaeuarchontogliresCapromys pilorides
    GCA_004027915.1_CapPil_v1_BIUU    		34842
    415Upper Galilee mountains blind mole rateuarchontogliresNannospalax galili
    GCA_000622305.1_S.galili_v1.0    		1026970
    416nutriaeuarchontogliresMyocastor coypus
    GCA_004027025.1_MyoCoy_v1_BIUU    		10157
    417hazel dormouseeuarchontogliresMuscardinus avellanarius
    GCA_004027005.1_MusAve_v1_BIUU    		39082
    418dassie-rateuarchontogliresPetromus typicus
    GCA_004026965.1_PetTyp_v1_BIUU    		10183
    419greater cane rateuarchontogliresThryonomys swinderianus
    GCA_004025085.1_ThrSwi_v1_BIUU    		10169
    420snowshoe hareeuarchontogliresLepus americanus
    GCA_004026855.1_LepAme_v1_BIUU    		48086
    421Gambian giant pouched rateuarchontogliresCricetomys gambianus
    GCA_004027575.1_CriGam_v1_BIUU    		10085
    422Prairie deer mouseeuarchontogliresPeromyscus maniculatus
    GCF_000500345.1_Pman_1.0    		10042
    423southern grasshopper mouseeuarchontogliresOnychomys torridus
    GCA_004026725.1_OnyTor_v1_BIUU    		38674
    424rabbiteuarchontogliresOryctolagus cuniculus
    GCA_000003625.1_OryCun2.0    		9986
    425muskrateuarchontogliresOndatra zibethicus
    GCA_004026605.1_OndZib_v1_BIUU    		10060
    426northern mole voleeuarchontogliresEllobius talpinus
    GCA_001685095.1_ETalpinus_0.1    		329620
    427Mongolian gerbileuarchontogliresMeriones unguiculatus
    GCA_004026785.1_MerUng_v1_BIUU    		10047
    428fat sand rateuarchontogliresPsammomys obesus
    GCA_002215935.1_ASM221593v1    		48139
    429house mouseeuarchontogliresMus musculus
    mm10    		10090
    430Chinese hamstereuarchontogliresCricetulus griseus
    GCA_900186095.1_CHOK1S_HZDv1    		10029
    431Norway rateuarchontogliresRattus norvegicus
    GCF_000001895.5_Rnor_6.0    		10116
    432western wild mouseeuarchontogliresMus spretus
    GCA_001624865.1_SPRET_EiJ_v1    		10096
    433meadow jumping mouseeuarchontogliresZapus hudsonius
    GCA_004024765.1_ZapHud_v1_BIUU    		160400
    434prairie voleeuarchontogliresMicrotus ochrogaster
    micOch1    		79684
    435Ryukyu mouseeuarchontogliresMus caroli
    GCA_900094665.2_CAROLI_EIJ_v1.1    		10089
    436Egyptian spiny mouseeuarchontogliresAcomys cahirinus
    GCA_004027535.1_AcoCah_v1_BIUU    		10068
    437Gobi jerboaeuarchontogliresAllactaga bullata (Orientallactaga bullata)
    GCA_004027895.1_AllBul_v1_BIUU    		1041416
    438shrew mouseeuarchontogliresMus pahari
    GCF_900095145.1_PAHARI_EIJ_v1.1    		10093
    439Transcaucasian mole voleeuarchontogliresEllobius lutescens
    GCA_001685075.1_ASM168507v1    		39086
    440hispid cotton rateuarchontogliresSigmodon hispidus
    GCA_004025045.1_SigHis_v1_BIUU    		42415
    441lesser Egyptian jerboaeuarchontogliresJaculus jaculus
    GCA_000280705.1_JacJac1.0    		51337
    442Brazilian guinea pigeuarchontogliresCavia aperea
    cavApe1    		37548
    443golden hamstereuarchontogliresMesocricetus auratus
    GCA_000349665.1_MesAur1.0    		10036
    444Stephens's kangaroo rateuarchontogliresDipodomys stephensi
    GCA_004024685.1_DipSte_v1_BIUU    		323379
    445American pikaeuarchontogliresOchotona princeps
    GCA_000292845.1_OchPri3.0    		9978
    446Ord's kangaroo rateuarchontogliresDipodomys ordii
    dipOrd2    		10020
    447little pocket mouseeuarchontogliresPerognathus longimembris38669

    \ Table 1. Genome assemblies included in the 447-way Conservation track.\

    \ \ \

    References

    \

    \ Kuderna LFK, Ulirsch JC, Rashid S, Ameen M, Sundaram L, Hickey G, Cox AJ, Gao H, Kumar A, Aguet F\ et al.\ \ Identification of constrained sequence elements across 239 primate genomes.\ Nature. 2023 Nov 29;.\ DOI: 10.1038/s41586-023-06798-8; PMID: 38030727\

    \

    \ Kuderna LFK, Gao H, Janiak MC, Kuhlwilm M, Orkin JD, Bataillon T, Manu S, Valenzuela A, Bergman J,\ Rousselle M et al.\ \ A global catalog of whole-genome diversity from 233 primate species.\ Science. 2023 Jun 2;380(6648):906-913.\ DOI: 10.1126/science.abn7829;\ PMID: 37262161\

    \

    \ Zoonomia Consortium.\ \ A comparative genomics multitool for scientific discovery and conservation.\ Nature. 2020 Nov;587(7833):240-245.\ DOI: 10.1038/s41586-020-2876-6; PMID: 33177664; PMC: PMC7759459\

    \

    \ Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC et\ al.\ \ Dense sampling of bird diversity increases power of comparative genomics.\ Nature. 2020 Nov;587(7833):252-257.\ DOI: 10.1038/s41586-020-2873-9; PMID: 33177665; PMC: PMC7759463\

    \

    \ Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q, Xie D, Feng S, Stiller J\ et al.\ \ Progressive Cactus is a multiple-genome aligner for the thousand-genome era.\ Nature. 2020 Nov;587(7833):246-251.\ DOI: 10.1038/s41586-020-2871-y; PMID: 33177663; PMC: PMC7673649\

    \ compGeno 1 compositeTrack on\ dragAndDrop subTracks\ group compGeno\ html cactus447way\ longLabel Cactus Alignment & Conservation on 447 mammal species, including Zoonomia genomes\ shortLabel Cactus 447-way\ subGroup1 view Views align=Multiz_Alignments phyloP=Basewise_Conservation_(phyloP)\ track cons447way\ type bed 4\ visibility hide\ cactus447way Cactus 447-way bigMaf Cactus alignment on 447 mammal species, including Zoonomia genomes 3 100 0 10 100 0 90 10 0 0 0

    Data Access

    \

    \ Downloads for data in this track are available from the directory:\

    \

    \ \

    Display Conventions and Configuration

    \

    \ In full and pack display modes, conservation scores are displayed as a\ wiggle track (histogram) in which the height reflects the\ size of the score.\ The conservation wiggles can be configured in a variety of ways to\ highlight different aspects of the displayed information.\ Click the Graph configuration help link for an explanation\ of the configuration options.

    \

    \ Pairwise alignments of each species to the human genome are\ displayed below the conservation histogram as a grayscale density plot (in\ pack mode) or as a wiggle (in full mode) that indicates alignment quality.\ In dense display mode, conservation is shown in grayscale using\ darker values to indicate higher levels of overall conservation\ as scored by phastCons.

    \

    \ Checkboxes on the track configuration page allow selection of the\ species to include in the pairwise display.\ Note that excluding species from the pairwise display does not alter the\ the conservation score display.

    \

    \ To view detailed information about the alignments at a specific\ position, zoom the display in to 30,000 or fewer bases, then click on\ the alignment.

    \ \

    Gap Annotation

    \

    \ The Display chains between alignments configuration option\ enables display of gaps between alignment blocks in the pairwise alignments in\ a manner similar to the Chain track display. Missing sequence in any\ assembly is highlighted in the track display by regions of yellow when zoomed\ out and by Ns when displayed at base level. The following conventions are used:\

      \
    • Single line: No bases in the aligned species. Possibly due to a\ lineage-specific insertion between the aligned blocks in the human genome\ or a lineage-specific deletion between the aligned blocks in the aligning\ species.\
    • Double line: Aligning species has one or more unalignable bases in\ the gap region. Possibly due to excessive evolutionary distance between\ species or independent indels in the region between the aligned blocks in both\ species.\
    • Pale yellow coloring: Aligning species has Ns in the gap region.\ Reflects uncertainty in the relationship between the DNA of both species, due\ to lack of sequence in relevant portions of the aligning species.\

    \ \

    Genomic Breaks

    \

    \ Discontinuities in the genomic context (chromosome, scaffold or region) of the\ aligned DNA in the aligning species are shown as follows:\

      \
    • \ Vertical blue bar: Represents a discontinuity that persists indefinitely\ on either side, e.g. a large region of DNA on either side of the bar\ comes from a different chromosome in the aligned species due to a large scale\ rearrangement.\
    • \ Green square brackets: Enclose shorter alignments consisting of DNA from\ one genomic context in the aligned species nested inside a larger chain of\ alignments from a different genomic context. The alignment within the\ brackets may represent a short misalignment, a lineage-specific insertion of a\ transposon in the human genome that aligns to a paralogous copy somewhere\ else in the aligned species, or other similar occurrence.\

    \ \

    Base Level

    \

    \ When zoomed-in to the base-level display, the track shows the base\ composition of each alignment. The numbers and symbols on the Gaps\ line indicate the lengths of gaps in the human sequence at those\ alignment positions relative to the longest non-human sequence.\ If there is sufficient space in the display, the size of the gap is shown.\ If the space is insufficient and the gap size is a multiple of 3, a\ "*" is displayed; other gap sizes are indicated by "+".

    \

    \ Codon translation is available in base-level display mode if the\ displayed region is identified as a coding segment. To display this annotation,\ select the species for translation from the pull-down menu in the Codon\ Translation configuration section at the top of the page. Then, select one of\ the following modes:\

      \
    • \ No codon translation: The gene annotation is not used; the bases are\ displayed without translation.\
    • \ Use default species reading frames for translation: The annotations from\ the genome displayed in the Default species to establish reading frame\ pull-down menu are used to translate all the aligned species present in the\ alignment.\
    • \ Use reading frames for species if available, otherwise no translation:\ Codon translation is performed only for those species where the region is\ annotated as protein coding.\
    • Use reading frames for species if available, otherwise use default species:\ Codon translation is done on those species that are annotated as being protein\ coding over the aligned region using species-specific annotation; the remaining\ species are translated using the default species annotation.\

    \

    \ Codon translation uses the following gene tracks as the basis for translation:\

    \ \ \ \ \ \
    Gene TrackSpecies
    RefSeq GenesBos mutus, Canis lupus familiaris, Carlito syrichta, Cercocebus atys, Chinchilla lanigera, Colobus angolensis, Condylura cristata, Dipodomys ordii, Elephantulus edwardii, Eptesicus fuscus, Felis catus, Felis catus fca126, Fukomys damarensis, Homo sapiesn, Ictidomys tridecemlineatus, Macaca mulatta, Macaca nemestrina, Marmota marmota, Microtus ochrogaster, Miniopterus natalensis, Mus musculus, Mus pahari, Myotis brandtii, Myotis davidii, Myotis lucifugus, Odobenus rosmarus, Orcinus orca, Otolemur garnettii, Peromyscus maniculatus, Piliocolobus tephrosceles, Propithecus coquerelli, Pteropus alecto, Pteropus vampyrus, Rattus norvegicus, Rhinopithecus roxellana, Saimiri boliviensis, Sorex araneus, Sus scrofa, Theropithecus gelada, Tupaia chinensis
    Ensembl GenesCavia aperea
    Augustus GenesEidolon helvum, Pteronotus parnellii
    no annotationAcinonyx jubatus, Acomys cahirinus, Ailuropoda melanoleuca, Ailurus fulgens, Allactaga bullata, Allenopithecus nigroviridis, Allochrocebus lhoesti, Allochrocebus preussi, Allochrocebus solatus, Alouatta belzebul, Alouatta caraya, Alouatta discolor, Alouatta juara, Alouatta macconnelli, Alouatta nigerrima, Alouatta palliata, Alouatta puruensis, Alouatta seniculus, Ammotragus lervia, Anoura caudifer, Antilocapra americana, Aotus azarae, Aotus griseimembra, Aotus nancymaae, Aotus trivirgatus, Aotus vociferans, Aplodontia rufa, Arctocebus calabarensis, Artibeus jamaicensis, Ateles geoffroyi_a, Ateles geoffroyi_b, Ateles belzebuth, Ateles chamek, Ateles marginatus, Ateles paniscus, Avahi laniger, Avahi peyrierasi, Balaenoptera acutorostrata, Balaenoptera bonaerensis, Beatragus hunteri, Bison bison, Bos indicus, Bos taurus, Bubalus bubalis, Cacajao ayresi, Cacajao calvus, Cacajao hosomi, Cacajao melanocephalus, Callibella humilis, Callimico goeldii, Callithrix geoffroyi, Callithrix jacchus, Callithrix kuhlii, Camelus bactrianus, Camelus dromedarius, Camelus ferus, Canis lupus VD, Canis lupus dingo, Canis lupus orion, Capra aegagrus, Capra hircus, Capromys pilorides, Carollia perspicillata, Castor canadensis, Catagonus wagneri, Cavia porcellus, Cavia tschudii, Cebuella niveiventris, Cebuella pygmaea, Cebus albifrons, Cebus olivaceus, Cebus unicolor, Cephalopachus bancanus, Ceratotherium simum, Ceratotherium simum cottoni, Cercocebus chrysogaster, Cercocebus lunulatus, Cercocebus torquatus, Cercopithecus ascanius, Cercopithecus cephus, Cercopithecus diana, Cercopithecus hamlyni, Cercopithecus lowei, Cercopithecus albogularis, Cercopithecus mona, Cercopithecus neglectus, Cercopithecus nictitans, Cercopithecus petaurista, Cercopithecus pogonias, Cercopithecus roloway, Chaetophractus vellerosus, Cheirogaleus major, Cheirogaleus medius, Cheracebus lucifer, Cheracebus lugens, Cheracebus regulus, Cheracebus torquatus, Chiropotes albinasus, Chiropotes israelita, Chiropotes sagulatus, Chlorocebus aethiops, Chlorocebus pygerythrus, Chlorocebus sabaeus, Choloepus didactylus, Choloepus hoffmanni, Chrysochloris asiatica, Colobus guereza, Colobus polykomos, Craseonycteris thonglongyai, Cricetomys gambianus, Cricetulus griseus, Crocidura indochinensis, Cryptoprocta ferox, Ctenodactylus gundi, Ctenomys sociabilis, Cuniculus paca, Dasyprocta punctata, Dasypus novemcinctus, Daubentonia madagascariensis, Delphinapterus leucas, Desmodus rotundus, Dicerorhinus sumatrensis, Diceros bicornis, Dinomys branickii, Dipodomys stephensi, Dolichotis patagonum, Echinops telfairi, Elaphurus davidianus, Ellobius lutescens, Ellobius talpinus, Enhydra lutris, Equus asinus, Equus caballus, Equus przewalskii, Erinaceus europaeus, Erythrocebus patas, Eschrichtius robustus, Eubalaena japonica, Eulemur albifrons, Eulemur collaris, Eulemur coronatus, Eulemur flavifrons, Eulemur fulvus, Eulemur macaco, Eulemur mongoz, Eulemur rubriventer, Eulemur rufus, Eulemur sanfordi, Felis nigripes, Galago moholi, Galago senegalensis, Galagoides demidoff, Galeopterus variegatus, Giraffa tippelskirchi, Glis glis, Gorilla beringei, Gorilla gorilla, Graphiurus murinus, Hapalemur alaotrensis, Hapalemur gilberti, Hapalemur griseus, Hapalemur meridionalis, Hapalemur occidentalis, Helogale parvula, Hemitragus hylocrius, Heterocephalus glaber, Heterohyrax brucei, Hippopotamus amphibius, Hipposideros armiger, Hipposideros galeritus, Hoolock leuconedys, Hyaena hyaena, Hydrochoerus hydrochaeris, Hylobates abbotti, Hylobates agilis, Hylobates klossii, Hylobates pileatus, Hylobates muelleri, Hylobates pileatus, Hystrix cristata, Indri indri, Inia geoffrensis, Jaculus jaculus, Kogia breviceps, Lagothrix lagothricha, Lasiurus borealis, Lemur catta, Leontocebus fuscicollis, Leontocebus illigeri, Leontocebus nigricollis, Leontopithecus chrysomelas, Leontopithecus rosalia, Lepilemur ankaranensis, Lepilemur dorsalis, Lepilemur ruficaudatus, Lepilemur septentrionalis, Leptonychotes weddellii, Lepus americanus, Lipotes vexillifer, Lophocebus aterrimus, Loris lydekkerianus, Loris tardigradus, Loxodonta africana, Lycaon pictus, Macaca arctoides, Macaca assamensis, Macaca cyclopis, Macaca fascicularis, Macaca fuscata, Macaca leonina, Macaca maura, Macaca nigra, Macaca radiata, Macaca siberu, Macaca silenus, Macaca thibetana, Macaca tonkeana, Macroglossus sobrinus, Mandrillus leucophaeus, Mandrillus sphinx, Manis javanica, Manis pentadactyla, Megaderma lyra, Mellivora capensis, Meriones unguiculatus, Mesocricetus auratus, Mesoplodon bidens, Mico argentatus, Mico humeralifer, Mico schneideri, Microcebus murinus, Microgale talazaci, Micronycteris hirsuta, Miniopterus schreibersii, Miopithecus ogouensis, Mirounga angustirostris, Mirza zaza, Monodon monoceros, Mormoops blainvillei, Moschus moschiferus, Mungos mungo, Murina feae, Mus caroli, Mus spretus, Muscardinus avellanarius, Mustela putorius, Myocastor coypus, Myotis myotis, Myrmecophaga tridactyla, Nannospalax galili, Nasalis larvatus, Neomonachus schauinslandi, Neophocaena asiaeorientalis, Noctilio leporinus, Nomascus annamensis, Nomascus concolor, Nomascus gabriellae, Nomascus siki_a, Nomascus siki_b, Nyctereutes procyonoides, Nycticebus bengalensis, Nycticebus coucang, Nycticebus pygmaeus, Ochotona princeps, Octodon degus, Odocoileus virginianus, Okapia johnstoni, Ondatra zibethicus, Onychomys torridus, Orycteropus afer, Oryctolagus cuniculus, Otocyon megalotis, Otolemur crassicaudatus, Ovis aries, Ovis canadensis, Pan paniscus, Pan troglodytes, Panthera onca, Panthera pardus, Panthera tigris, Pantholops hodgsonii, Papio anubis, Papio cynocephalus, Papio hamadryas, Papio kindae, Papio papio, Papio ursinus, Paradoxurus hermaphroditus, Perodicticus ibeanus, Perodicticus potto, Perognathus longimembris, Petromus typicus, Phocoena phocoena, Piliocolobus badius, Piliocolobus gordonorum, Piliocolobus kirkii, Pipistrellus pipistrellus, Pithecia albicans, Pithecia chrysocephala, Pithecia hirsuta, Pithecia mittermeieri, Pithecia pissinattii, Pithecia pithecia, Pithecia vanzolinii, Platanista gangetica, Plecturocebus bernhardi, Plecturocebus brunneus, Plecturocebus caligatus, Plecturocebus cinerascens, Plecturocebus cupreus, Plecturocebus dubius, Plecturocebus grovesi, Plecturocebus hoffmannsi, Plecturocebus miltoni, Plecturocebus moloch, Pongo abelii, Pongo pygmaeus, Presbytis comata, Presbytis mitrata, Procavia capensis, Prolemur simus, Propithecus coronatus, Propithecus diadema, Propithecus edwardsi, Propithecus perrieri, Propithecus tattersalli, Propithecus verreauxi, Psammomys obesus, Pteronura brasiliensis, Puma concolor, Pygathrix cinerea, Pygathrix nigripes, Pygathrix nigripes, Rangifer tarandus, Rhinolophus sinicus, Rhinopithecus bieti, Rhinopithecus strykeri, Rousettus aegyptiacus, Saguinus bicolor, Saguinus geoffroyi, Saguinus imperator, Saguinus inustus, Saguinus labiatus, Saguinus midas, Saguinus mystax, Saguinus oedipus, Saiga tatarica, Saimiri cassiquiarensis, Saimiri macrodon, Saimiri oerstedii, Saimiri sciureus, Saimiri ustus, Sapajus apella, Sapajus macrocephalus, Scalopus aquaticus, Semnopithecus entellus, Semnopithecus hypoleucos, Semnopithecus johnii, Semnopithecus priam, Semnopithecus schistaceus, Semnopithecus vetulus, Sigmodon hispidus, Solenodon paradoxus, Spermophilus dauricus, Spilogale gracilis, Suricata suricatta, Symphalangus syndactylus, Tadarida brasiliensis, Tamandua tetradactyla, Tapirus indicus, Tapirus terrestris, Tarsius lariang, Tarsius wallacei, Thryonomys swinderianus, Tolypeutes matacus, Tonatia saurophila, Trachypithecus auratus, Trachypithecus crepusculus, Trachypithecus cristatus, Trachypithecus francoisi, Trachypithecus geei, Trachypithecus germaini, Trachypithecus hatinhensis, Trachypithecus laotum, Trachypithecus leucocephalus, Trachypithecus melamera, Trachypithecus obscurus, Trachypithecus phayrei, Trachypithecus pileatus, Tragulus javanicus, Trichechus manatus, Tupaia tana, Tursiops truncatus, Uropsilus gracilis, Ursus maritimus, Varecia rubra, Varecia variegata, Vicugna pacos, Vulpes lagopus, Xerus inauris, Zalophus californianus, Zapus hudsonius, Ziphius cavirostris\
    \ Table 2. Gene tracks used for codon translation.\

    \ \

    Methods

    \

    \ This alignment was created by making three edits (using Cactus) to the\ 241-way mammalian Zoonomia Cactus alignment\ (\ https://cglgenomics.ucsc.edu/data/cactus/).\

      \
    • One additional cat genome, "Felis_catus_fca126" (GCA_018350175.1) was\ added as a sister taxa to the existing "Felis_catus" species
      • \
    • Five additional canine genomes were also added: canFam4,\ "Canis_lupus_dingo" (GCA_003254725.1), "Canis_lupus_orion"\ (GCA_905319855.2), "Nyctereutes_procyonoides" (GCA_905146905.1) and\ "Otocyon_megalotis" (GCA_017311455.1). "Canis_lupus" from the Zoonomia\ alignment was also renamed "Canis_lupus_VD" to reflect the fact that it\ corresponds to a "village dog" and not "wolf" sample.
      • \
    • The 43-species primates clade from the Zoonomia alignment was removed\ and replaced with the 243-way primates alignment from Identification of\ constrained sequence elements across 239 primate genomes, increasing the alignment by 200\ additional primate species.
      • \
    \

    \ \

    Phylogenic tree

    \

    \ The phylogenic tree was established by the research described\ in A global catalog of whole-genome diversity from 233 primate\ species.\ \

    Sequences

    \

    \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    countcommon
    name    		cladescientific name
    (link to browser when existing)    		taxon id
    link to NCBI
    001humanprimates catarrhiniHomo sapiens/hg38
    reference species    		9606
    002western gorillaprimates catarrhiniGorilla gorilla
    GCA_900006655.3_Susie3    		9593
    003Sumatran orangutanprimates catarrhiniPongo abelii
    GCA_002880775.3_Susie_PABv2    		9601
    004Eastern Gorillaprimates catarrhiniGorilla beringei499232
    005chimpanzeeprimates catarrhiniPan troglodytes
    GCA_002880755.3_Clint_PTRv2    		9598
    006Bornean orangutanprimates catarrhiniPongo pygmaeus9600
    007Rhesus monkeyprimates catarrhiniMacaca mulatta
    rheMac10    		9544
    008geladaprimates catarrhiniTheropithecus gelada
    GCF_003255815.1_Tgel_1.0    		9565
    009stump-tailed macaqueprimates catarrhiniMacaca arctoides9540
    010Northern Talapoin Monkeyprimates catarrhiniMiopithecus ogouensis100488
    011crab-eating macaqueprimates catarrhiniMacaca fascicularis9541
    012Allen's swamp monkeyprimates catarrhiniAllenopithecus nigroviridis54135
    013siamangprimates catarrhiniSymphalangus syndactylus9590
    014black crested mangabeyprimates catarrhiniLophocebus aterrimus75566
    015drillprimates catarrhiniMandrillus leucophaeus9568
    016Bonnet Macaqueprimates catarrhiniMacaca radiata9548
    017Red-capped Mangabeyprimates catarrhiniCercocebus torquatus9530
    018Golden-bellied Mangabeyprimates catarrhiniCercocebus chrysogaster75569
    019Owl-faced Monkeyprimates catarrhiniCercopithecus hamlyni9536
    020Siberut Macaqueprimates catarrhiniMacaca siberu244255
    021pig-tailed macaqueprimates catarrhiniMacaca nemestrina
    GCF_000956065.1_Mnem_1.0    		9545
    022White-naped Mangabeyprimates catarrhiniCercocebus lunulatus (Cercocebus atys lunulatus)75570
    023Tonkean Macaqueprimates catarrhiniMacaca tonkeana40843
    024Diana Monkeyprimates catarrhiniCercopithecus diana36224
    025red guenonprimates catarrhiniErythrocebus patas9538
    026Northern Pig-tailed Macaqueprimates catarrhiniMacaca leonina90387
    027Moor Macaqueprimates catarrhiniMacaca maura90383
    028Guinea Baboonprimates catarrhiniPapio papio100937
    029hamadryas baboonprimates catarrhiniPapio hamadryas9557
    030liontail macaqueprimates catarrhiniMacaca silenus54601
    031olive baboonprimates catarrhiniPapio anubis
    GCA_000264685.2_Panu_3.0    		9555
    032Roloway Monkeyprimates catarrhiniCercopithecus roloway1137049
    033Kinda Baboonprimates catarrhiniPapio kindae208091
    034Chacma Baboonprimates catarrhiniPapio ursinus36229
    035Sun-tailed Monkeyprimates catarrhiniAllochrocebus solatus147650
    036golden snub-nosed monkeyprimates catarrhiniRhinopithecus roxellana
    GCF_007565055.1_ASM756505v1    		61622
    037Vervet Monkeyprimates catarrhiniChlorocebus pygerythrus60710
    038sooty mangabeyprimates catarrhiniCercocebus atys
    GCF_000955945.1_Caty_1.0    		9531
    039green monkeyprimates catarrhiniChlorocebus sabaeus
    GCA_000409795.2_Chlorocebus_sabeus_1.1    		60711
    040De Brazza's monkeyprimates catarrhiniCercopithecus neglectus36227
    041Yellow Baboonprimates catarrhiniPapio cynocephalus9556
    042Celebes crested macaqueprimates catarrhiniMacaca nigra54600
    043proboscis monkeyprimates catarrhiniNasalis larvatus43780
    044Preuss's Monkeyprimates catarrhiniAllochrocebus preussi147649
    045Putty-nosed Monkeyprimates catarrhiniCercopithecus nictitans36228
    046Javan Suriliprimates catarrhiniPresbytis comata78452
    047Sykes' Monkeyprimates catarrhiniCercopithecus albogularis36225
    048LHoests Monkeyprimates catarrhiniAllochrocebus lhoesti100224
    049Crowned Monkeyprimates catarrhiniCercopithecus pogonias102108
    050Southern Mitered Langurprimates catarrhiniPresbytis mitrata (Presbytis melalophos mitrata)272115
    051Grey-shanked Douc Langurprimates catarrhiniPygathrix cinerea693712
    052Mona monkeyprimates catarrhiniCercopithecus mona36226
    053Spot-nosed Monkeyprimates catarrhiniCercopithecus petaurista100487
    054grivetprimates catarrhiniChlorocebus aethiops9534
    055Lowes Monkeyprimates catarrhiniCercopithecus lowei304410
    056Northern Yellow-cheeked Crested Gibbonprimates catarrhiniNomascus annamensis1616038
    057Red-cheeked Gibbonprimates catarrhiniNomascus gabriellae61852
    058Japanese macaqueprimates catarrhiniMacaca fuscata9542
    059Western Red Colobusprimates catarrhiniPiliocolobus badius164648
    060southern white-cheeked gibbonprimates catarrhiniNomascus siki_a9586
    061Taiwan macaqueprimates catarrhiniMacaca cyclopis78449
    062black-shanked douc langurprimates catarrhiniPygathrix nigripes310352
    063King Colobusprimates catarrhiniColobus polykomos9572
    064Black Crested Gibbonprimates catarrhiniNomascus concolor29089
    065Udzungwa Red Colobusprimates catarrhiniPiliocolobus gordonorum591933
    066Gee's Golden Langurprimates catarrhiniTrachypithecus geei164650
    067Kloss's Gibbonprimates catarrhiniHylobates klossii9587
    068Spectacled Leaf Monkeyprimates catarrhiniTrachypithecus obscurus54181
    069Zanzibar Red Colobusprimates catarrhiniPiliocolobus kirkii591937
    070Indochinese Silvered Langurprimates catarrhiniTrachypithecus germaini271260
    071Hatinh Langurprimates catarrhiniTrachypithecus hatinhensis867383
    072Moustached Monkeyprimates catarrhiniCercopithecus cephus9535
    073Laotian Langurprimates catarrhiniTrachypithecus laotum465718
    074Francois's langurprimates catarrhiniTrachypithecus francoisi54180
    075Purple-faced Langurprimates catarrhiniSemnopithecus vetulus (Trachypithecus vetulus)54137
    076Capped Langurprimates catarrhiniTrachypithecus pileatus164651
    077Ugandan red Colobusprimates catarrhiniPiliocolobus tephrosceles
    GCF_002776525.2_ASM277652v2    		591936
    078Spangled Ebony Langurprimates catarrhiniTrachypithecus auratus222416
    079Red-tailed Monkeyprimates catarrhiniCercopithecus ascanius36223
    080Silvery Lutungprimates catarrhiniTrachypithecus cristatus122765
    081Nilgiri Langurprimates catarrhiniSemnopithecus johnii (Trachypithecus johnii)66063
    082Indochinese grey langurprimates catarrhiniTrachypithecus crepusculus (Trachypithecus phayrei crepuscula)272121
    083White-headed langurprimates catarrhiniTrachypithecus leucocephalus (Trachypithecus poliocephalus)465719
    084pygmy chimpanzeeprimates catarrhiniPan paniscus
    GCA_000258655.2_panpan1.1    		9597
    085northern white-cheeked gibbonprimates catarrhiniNomascus siki_b9586
    086Agile Gibbonprimates catarrhiniHylobates agilis9579
    087Phayre's Leaf-monkeyprimates catarrhiniTrachypithecus melameran/a
    088Nepal Gray Langurprimates catarrhiniSemnopithecus schistaceus2804203
    089Abbott's Gray Gibbonprimates catarrhiniHylobates abbotti (Hylobates muelleri abbotti)716694
    090Bornean Gibbonprimates catarrhiniHylobates muelleri9588
    091Tufted Gray Langurprimates catarrhiniSemnopithecus priam1208733
    092Black-footed Gray Langurprimates catarrhiniSemnopithecus hypoleucos1208734
    093mantled guerezaprimates catarrhiniColobus guereza33548
    094Hanuman langurprimates catarrhiniSemnopithecus entellus88029
    095pileated gibbonprimates catarrhiniHylobates pileatus9589
    096black snub-nosed monkeyprimates catarrhiniRhinopithecus bieti61621
    097Burmese snub-nosed monkeyprimates catarrhiniRhinopithecus strykeri1194336
    098Angolan colobusprimates catarrhiniColobus angolensis
    colAng1    		54131
    099Pileated Gibbonprimates catarrhiniHylobates pileatus9589
    100black-shanked douc langurprimates catarrhiniPygathrix nigripes310352
    101Milne-edwards' Macaqueprimates catarrhiniMacaca thibetana54602
    102Phayre's Leaf-monkeyprimates catarrhiniTrachypithecus phayrei61618
    103Assam macaqueprimates catarrhiniMacaca assamensis9551
    104Eastern hoolock gibbonprimates catarrhiniHoolock leuconedys61851
    105mandrillprimates catarrhiniMandrillus sphinx9561
    106White-faced Sakiprimates platyrrhiniPithecia chrysocephala2946515
    107Monk Sakiprimates platyrrhiniPithecia hirsuta2946516
    108white-faced sakiprimates platyrrhiniPithecia pithecia43777
    109Mittermeier's Tapajós sakiprimates platyrrhiniPithecia mittermeieri2946517
    110Buffy Sakiprimates platyrrhiniPithecia albicans2946514
    111Pissinatti's sakiprimates platyrrhiniPithecia pissinattii (Pithecia pissinatti)2946518
    112Vanzolini's Bald-faced Sakiprimates platyrrhiniPithecia vanzolinii2946519
    113Bald-headed Uacariprimates platyrrhiniCacajao calvus30596
    114Ayres Black Uakariprimates platyrrhiniCacajao ayresi535896
    115Black-headed Uacariprimates platyrrhiniCacajao melanocephalus70825
    116Black-headed Uacariprimates platyrrhiniCacajao hosomi535897
    117Reddish-brown bearded sakiprimates platyrrhiniChiropotes sagulatus (Chiropotes chiropotes)658221
    118brown-backed bearded sakiprimates platyrrhiniChiropotes israelita280163
    119Collared Titi Monkeyprimates platyrrhiniCheracebus lugens210166
    120Brown Titi Monkeyprimates platyrrhiniPlecturocebus brunneus1812042
    121Hoffmanns's titi monkeyprimates platyrrhiniPlecturocebus hoffmannsi78255
    122Milton's Titi Monkeyprimates platyrrhiniPlecturocebus miltoni1812038
    123Widow Monkeyprimates platyrrhiniCheracebus torquatus30592
    124Ashy Black Titi Monkeyprimates platyrrhiniPlecturocebus cinerascens1812037
    125Prince Bernhard's Titi Monkeyprimates platyrrhiniPlecturocebus bernhardi1812036
    126Yellow-handed Titi Monkeyprimates platyrrhiniCheracebus lucifer2487712
    127Coppery Titi Monkeyprimates platyrrhiniPlecturocebus cupreus202457
    128Chestnut-bellied Titiprimates platyrrhiniPlecturocebus caligatus867332
    129Hershkovitzs Titiprimates platyrrhiniPlecturocebus dubius2946520
    130Red-bellied Titi Monkeyprimates platyrrhiniPlecturocebus moloch9523
    131Groves' Titiprimates platyrrhiniPlecturocebus grovesi2488670
    132black-handed spider monkeyprimates platyrrhiniAteles geoffroyi_a9509
    133Widow Monkeyprimates platyrrhiniCheracebus regulus1812110
    134Guiana Spider Monkeyprimates platyrrhiniAteles paniscus9510
    135Black-faced Black Spider Monkeyprimates platyrrhiniAteles chamek118643
    136White-cheeked Spider Monkeyprimates platyrrhiniAteles marginatus1529884
    137White-bellied Spider Monkeyprimates platyrrhiniAteles belzebuth9507
    138Common Woolly Monkeyprimates platyrrhiniLagothrix lagothricha (Lagothrix lagotricha)9519
    139large-headed capuchinprimates platyrrhiniSapajus macrocephalus (Sapajus apella macrocephalus)1547595
    140Spixs White-fronted Capuchinprimates platyrrhiniCebus unicolor1985288
    141Central American spider monkeyprimates platyrrhiniAteles geoffroyi_b9509
    142Guinan Weeper Capuchinprimates platyrrhiniCebus olivaceus37295
    143mantled howler monkeyprimates platyrrhiniAlouatta palliata30589
    144white-fronted capuchinprimates platyrrhiniCebus albifrons9514
    145Northern Night Monkeyprimates platyrrhiniAotus trivirgatus9505
    146Grey-handed Night Monkeyprimates platyrrhiniAotus griseimembra292213
    147Black-and-gold Howler Monkeyprimates platyrrhiniAlouatta caraya9502
    148Spixs Night Monkeyprimates platyrrhiniAotus vociferans57176
    149Red-handed Howler Monkeyprimates platyrrhiniAlouatta belzebul30590
    150Red-handed Howler Monkeyprimates platyrrhiniAlouatta discolor2905217
    151Azara's Night Monkeyprimates platyrrhiniAotus azarae (Aotus azarai)30591
    152Purús Red Howler Monkeyprimates platyrrhiniAlouatta puruensis (Alouatta seniculus puruensis)1347729
    153Black Howler Monkeyprimates platyrrhiniAlouatta nigerrima (Alouatta belzebul)30590
    154Guianan Red Howler Monkeyprimates platyrrhiniAlouatta macconnelli198115
    155Colombian Red Howler Monkeyprimates platyrrhiniAlouatta juara2946512
    156Colombian Red Howler Monkeyprimates platyrrhiniAlouatta seniculus9503
    157tufted capuchinprimates platyrrhiniSapajus apella9515
    158Ma's night monkeyprimates platyrrhiniAotus nancymaae
    GCA_000952055.2_Anan_2.0    		37293
    159Bolivian squirrel monkeyprimates platyrrhiniSaimiri boliviensis
    GCF_016699345.1_BCM_Sbol_2.0    		27679
    160White-nosed Sakiprimates platyrrhiniChiropotes albinasus198627
    161Black Mantle Tamarinprimates platyrrhiniLeontocebus nigricollis9489
    162brown-mantled tamarinprimates platyrrhiniLeontocebus fuscicollis9487
    163Illiger's saddle-back tamarinprimates platyrrhiniLeontocebus illigeri (Leontocebus fuscicollis illigeri)881947
    164Cotton-headed Tamarinprimates platyrrhiniSaguinus oedipus9490
    165Pied Tamarinprimates platyrrhiniSaguinus bicolor37588
    166Geoffroy's Tamarinprimates platyrrhiniSaguinus geoffroyi43778
    167White-fronted Titi Monkeyprimates platyrrhiniSaguinus inustus1079039
    168Moustached Tamarinprimates platyrrhiniSaguinus mystax9488
    169tamarinprimates platyrrhiniSaguinus imperator9491
    170Guianan Squirrel Monkeyprimates platyrrhiniSaimiri sciureus9521
    171Red-chested Mustached Tamarinprimates platyrrhiniSaguinus labiatus78454
    172Goeldi's Monkeyprimates platyrrhiniCallimico goeldii9495
    173Black-crowned Central American Squirrel Monkeyprimates platyrrhiniSaimiri oerstedii70928
    174Golden-headed Lion Tamarinprimates platyrrhiniLeontopithecus chrysomelas57374
    175golden lion tamarinprimates platyrrhiniLeontopithecus rosalia30588
    176Humboldt's Squirrel Monkeyprimates platyrrhiniSaimiri cassiquiarensis2946521
    177bare-eared squirrel monkeyprimates platyrrhiniSaimiri ustus66265
    178Ecuadorian squirrel monkeyprimates platyrrhiniSaimiri macrodon2946522
    179white-tufted-ear marmosetprimates platyrrhiniCallithrix jacchus9483
    180Eastern Pygmy Marmosetprimates platyrrhiniCebuella niveiventris2826950
    181Western Pygmy Marmosetprimates platyrrhiniCebuella pygmaea9493
    182Black And White Tassel-ear Marmosetprimates platyrrhiniMico humeralifer52232
    183Black-crowned Dwarf Marmosetprimates platyrrhiniCallibella humilis (Mico humilis)666519
    184Mico schneideriprimates platyrrhiniMico schneiderin/a
    185Silvery Marmosetprimates platyrrhiniMico argentatus9482
    186Midas tamarinprimates platyrrhiniSaguinus midas30586
    187Wieds Marmosetprimates platyrrhiniCallithrix kuhlii867363
    188Geoffroy's Tufted-ear Marmosetprimates platyrrhiniCallithrix geoffroyi52231
    189Horsfield's tarsierprimates tarsiidaeCephalopachus bancanus9477
    190Philippine tarsierprimates tarsiidaeCarlito syrichta
    tarSyr2    		1868482
    191Lariang Tarsierprimates tarsiidaeTarsius lariang630277
    192Wallace's Tarsierprimates tarsiidaeTarsius wallacei981131
    193aye-ayeprimates strepsirrhiniDaubentonia madagascariensis31869
    194Crowned Sifakaprimates strepsirrhiniPropithecus coronatus (Propithecus deckenii coronatus)475619
    195Perrier's Sifakaprimates strepsirrhiniPropithecus perrieri989338
    196ruffed lemurprimates strepsirrhiniVarecia variegata9455
    197Diademed Sifakaprimates strepsirrhiniPropithecus diadema83281
    198Milne-Edwards Sifakaprimates strepsirrhiniPropithecus edwardsi543559
    199babakotoprimates strepsirrhiniIndri indri34827
    200Golden-crowned Sifakaprimates strepsirrhiniPropithecus tattersalli30601
    201Eastern Woolly Lemurprimates strepsirrhiniAvahi laniger122246
    202Verreauxs Sifakaprimates strepsirrhiniPropithecus verreauxi34825
    203Peyrieras Woolly Lemurprimates strepsirrhiniAvahi peyrierasi1313323
    204Red Ruffed Lemurprimates strepsirrhiniVarecia rubra554167
    205greater bamboo lemurprimates strepsirrhiniProlemur simus1328070
    206Red-bellied Lemurprimates strepsirrhiniEulemur rubriventer34829
    207mongoose lemurprimates strepsirrhiniEulemur mongoz34828
    208Geoffroys Dwarf Lemurprimates strepsirrhiniCheirogaleus major47177
    209Crowned Lemurprimates strepsirrhiniEulemur coronatus13514
    210black lemurprimates strepsirrhiniEulemur macaco30602
    211lesser dwarf lemurprimates strepsirrhiniCheirogaleus medius9460
    212Sclater's lemurprimates strepsirrhiniEulemur flavifrons87288
    213Coquerel's sifakaprimates strepsirrhiniPropithecus coquerelli (Propithecus coquereli)
    proCoq1    		379532
    214Collared Brown Lemurprimates strepsirrhiniEulemur collaris (Eulemur fulvus collaris)47178
    215Red-tailed Sportive Lemurprimates strepsirrhiniLepilemur ruficaudatus78866
    216Red Brown Lemurprimates strepsirrhiniEulemur rufus859983
    217Sanfords Brown Lemurprimates strepsirrhiniEulemur sanfordi122225
    218White-fronted Lemurprimates strepsirrhiniEulemur albifrons1215604
    219Gray's Sportive Lemurprimates strepsirrhiniLepilemur dorsalis78583
    220brown lemurprimates strepsirrhiniEulemur fulvus13515
    221Sahafary Sportive Lemurprimates strepsirrhiniLepilemur septentrionalis78584
    222Sambirano Lesser Bamboo Lemurprimates strepsirrhiniHapalemur occidentalis867377
    223Alaotra Reed Lemurprimates strepsirrhiniHapalemur alaotrensis (Hapalemur griseus alaotrensis)122220
    224Eastern Lesser Bamboo Lemurprimates strepsirrhiniHapalemur griseus13557
    225Ankarana Sportive Lemurprimates strepsirrhiniLepilemur ankaranensis342401
    226ring-tailed lemurprimates strepsirrhiniLemur catta9447
    227gray bamboo lemurprimates strepsirrhiniHapalemur gilberti3043110
    228Rusty-gray Lesser Bamboo Lemurprimates strepsirrhiniHapalemur meridionalis3043112
    229Demidoffs Dwarf Galagoprimates strepsirrhiniGalagoides demidoff89672
    230northern giant mouse lemurprimates strepsirrhiniMirza zaza339999
    231gray mouse lemurprimates strepsirrhiniMicrocebus murinus
    GCA_000165445.3_Mmur_3.0    		30608
    232small-eared galagoprimates strepsirrhiniOtolemur garnettii
    otoGar3    		30611
    233Northern Lesser Galagoprimates strepsirrhiniGalago senegalensis9465
    234Thick-tailed Greater Galagoprimates strepsirrhiniOtolemur crassicaudatus9463
    235Grey Slender Lorisprimates strepsirrhiniLoris lydekkerianus300163
    236slender lorisprimates strepsirrhiniLoris tardigradus9468
    237West African Pottoprimates strepsirrhiniPerodicticus potto9472
    238East African Pottoprimates strepsirrhiniPerodicticus ibeanus (Perodicticus potto ibeanus)261737
    239Moholi bushbabyprimates strepsirrhiniGalago moholi30609
    240Pygmy Slow Lorisprimates strepsirrhiniNycticebus pygmaeus (Xanthonycticebus pygmaeus)101278
    241Bengal slow lorisprimates strepsirrhiniNycticebus bengalensis261741
    242Calabar Angwantiboprimates strepsirrhiniArctocebus calabarensis261739
    243slow lorisprimates strepsirrhiniNycticebus coucang9470
    244jaguarcarnivoraPanthera onca
    GCA_004023805.1_PanOnc_v1_BIUU    		9690
    245leopardcarnivoraPanthera pardus
    GCA_001857705.1_PanPar1.0    		9691
    246giant pandacarnivoraAiluropoda melanoleuca
    GCA_002007445.1_ASM200744v1    		9646
    247Hawaiian monk sealcarnivoraNeomonachus schauinslandi
    GCA_002201575.1_ASM220157v1    		29088
    248California sea lioncarnivoraZalophus californianus
    GCA_004024565.1_ZalCal_v1_BIUU    		9704
    249Greenland wolfcarnivoraCanis lupus orion
    GCA_905319855.2_mCanLor1.2    		2605939
    250Pacific walruscarnivoraOdobenus rosmarus
    odoRosDiv1    		9707
    251domestic cat (Fca126)carnivoraFelis catus fca126 (Felis catus)
    GCF_018350175.1_F.catus_Fca126_mat1.0    		9685
    252northern elephant sealcarnivoraMirounga angustirostris
    GCA_004023865.1_MirAng_v1_BIUU    		9716
    253domestic catcarnivoraFelis catus
    felCat8    		9685
    254domestic dog (BS72/Village Dog)carnivoraCanis lupus familiaris
    GCA_004027395.1_CanFam_VD_v1_BIUU
    255German Shepherd dog (Mischka)carnivoraCanis lupus familiaris (CanFam4) (Canis lupus familiaris)
    canFam4
    256dingocarnivoraCanis lupus dingo286419
    257raccoon dogcarnivoraNyctereutes procyonoides34880
    258fossacarnivoraCryptoprocta ferox94188
    259polar bearcarnivoraUrsus maritimus
    GCA_000687225.1_UrsMar_1.0    		29073
    260Asian palm civetcarnivoraParadoxurus hermaphroditus
    GCA_004024585.1_ParHer_v1_BIUU    		71117
    261African hunting dogcarnivoraLycaon pictus
    GCA_001887905.1_LycPicSAfr1.0    		9622
    262Arctic foxcarnivoraVulpes lagopus
    GCA_004023825.1_VulLag_v1_BIUU    		494514
    263dogcarnivoraCanis lupus familiaris
    GCF_000002285.3_CanFam3.1    		9615
    264striped hyenacarnivoraHyaena hyaena
    GCA_004023945.1_HyaHya_v1_BIUU    		95912
    265n/acarnivoraAcinonyx jubatus
    GCA_001443585.1_aciJub1    		32536
    266tigercarnivoraPanthera tigris
    GCA_000464555.1_PanTig1.0    		9694
    267Sea ottercarnivoraEnhydra lutris
    GCA_002288905.2_ASM228890v2    		34882
    268giant ottercarnivoraPteronura brasiliensis9672
    269bat-eared foxcarnivoraOtocyon megalotis9624
    270Weddell sealcarnivoraLeptonychotes weddellii
    GCA_000349705.1_LepWed1.0    		9713
    271Lesser pandacarnivoraAilurus fulgens
    GCA_002007465.1_ASM200746v1    		9649
    272ratelcarnivoraMellivora capensis
    GCA_004024625.1_MelCap_v1_BIUU    		9664
    273banded mongoosecarnivoraMungos mungo
    GCA_004023785.1_MunMun_v1_BIUU    		210652
    274dwarf mongoosecarnivoraHelogale parvula
    GCA_004023845.1_HelPar_v1_BIUU    		210647
    275meerkatcarnivoraSuricata suricatta
    GCA_004023905.1_SurSur_v1_BIUU    		37032
    276pumacarnivoraPuma concolor
    GCA_003327715.1_PumCon1.0    		9696
    277black-footed catcarnivoraFelis nigripes
    GCA_004023925.1_FelNig_v1_BIUU    		61379
    278European polecatcarnivoraMustela putorius
    GCA_000239315.1_MusPutFurMale1.0    		9668
    279western spotted skunkcarnivoraSpilogale gracilis
    GCA_004023965.1_SpiGra_v1_BIUU    		30551
    280Sumatran rhinoceroslaurasiatheriaDicerorhinus sumatrensis
    GCA_002844835.1_ASM284483v1    		89632
    281black rhinoceroslaurasiatheriaDiceros bicornis
    GCA_004027315.1_DicBicMic_v1_BIUU    		9805
    282Asiatic tapirlaurasiatheriaTapirus indicus
    GCA_004024905.1_TapInd_v1_BIUU    		9802
    283Brazilian tapirlaurasiatheriaTapirus terrestris
    GCA_004025025.1_TapTer_v1_BIUU    		9801
    284northern white rhinoceroslaurasiatheriaCeratotherium simum cottoni310713
    285asslaurasiatheriaEquus asinus
    GCA_001305755.1_ASM130575v1    		9793
    286Southern white rhinoceroslaurasiatheriaCeratotherium simum
    GCA_000283155.1_CerSimSim1.0    		9807
    287Przewalski's horselaurasiatheriaEquus przewalskii
    GCA_000696695.1_Burgud    		9798
    288horselaurasiatheriaEquus caballus
    GCA_000002305.1_EquCab2.0    		9796
    289Malayan pangolinlaurasiatheriaManis javanica
    GCA_001685135.1_ManJav1.0    		9974
    290Chinese pangolinlaurasiatheriaManis pentadactyla
    GCA_000738955.1_M_pentadactyla-1.1.1    		143292
    291Hispaniolan solenodonlaurasiatheriaSolenodon paradoxus79805
    292eastern molelaurasiatheriaScalopus aquaticus
    GCA_004024925.1_ScaAqu_v1_BIUU    		71119
    293gracile shrew molelaurasiatheriaUropsilus gracilis
    GCA_004024945.1_UroGra_v1_BIUU    		182669
    294star-nosed molelaurasiatheriaCondylura cristata
    GCF_000260355.1_ConCri1.0    		143302
    295western European hedgehoglaurasiatheriaErinaceus europaeus
    GCA_000296755.1_EriEur2.0    		9365
    296European shrewlaurasiatheriaSorex araneus
    sorAra2    		42254
    297Indochinese shrewlaurasiatheriaCrocidura indochinensis
    GCA_004027635.1_CroInd_v1_BIUU    		876679
    298Hoffmann's two-fingered slothxenarthraCholoepus hoffmanni
    GCA_000164785.2_C_hoffmanni-2.0.1    		9358
    299nine-banded armadilloxenarthraDasypus novemcinctus
    GCA_000208655.2_Dasnov3.0    		9361
    300giant anteaterxenarthraMyrmecophaga tridactyla
    GCA_004026745.1_MyrTri_v1_BIUU    		71006
    301southern tamanduaxenarthraTamandua tetradactyla
    GCA_004025105.1_TamTet_v1_BIUU    		48850
    302placentalsxenarthraTolypeutes matacus183749
    303southern two-toed slothxenarthraCholoepus didactylus
    GCA_004027855.1_ChoDid_v1_BIUU    		27675
    304screaming hairy armadilloxenarthraChaetophractus vellerosus
    GCA_004027955.1_ChaVel_v1_BIUU    		340076
    305North Pacific right whaleartiodactylaEubalaena japonica302098
    306grey whaleartiodactylaEschrichtius robustus9764
    307hippopotamusartiodactylaHippopotamus amphibius
    GCA_004027065.1_HipAmp_v1_BIUU    		9833
    308Minke whaleartiodactylaBalaenoptera acutorostrata
    GCA_000493695.1_BalAcu1.0    		9767
    309beluga whaleartiodactylaDelphinapterus leucas
    GCA_002288925.2_ASM228892v2    		9749
    310Antarctic minke whaleartiodactylaBalaenoptera bonaerensis
    GCA_000978805.1_ASM97880v1    		33556
    311boutuartiodactylaInia geoffrensis9725
    312harbor porpoiseartiodactylaPhocoena phocoena9742
    313narwhalartiodactylaMonodon monoceros
    GCA_004026685.1_MonMon_M_v1_BIUU    		40151
    314Yangtze River dolphinartiodactylaLipotes vexillifer
    GCA_000442215.1_Lipotes_vexillifer_v1    		118797
    315killer whaleartiodactylaOrcinus orca
    orcOrc1    		9733
    316Ganges River dolphinartiodactylaPlatanista gangetica118798
    317Yangtze finless porpoiseartiodactylaNeophocaena asiaeorientalis
    GCA_003031525.1_Neophocaena_asiaeorientalis_V1    		189058
    318Sowerby's beaked whaleartiodactylaMesoplodon bidens48745
    319alpacaartiodactylaVicugna pacos
    GCA_000767525.1_Vi_pacos_V1.0    		30538
    320Cuvier's beaked whale"artiodactylaZiphius cavirostris9760
    321Bactrian camelartiodactylaCamelus bactrianus
    GCA_000767855.1_Ca_bactrianus_MBC_1.0    		9837
    322Arabian camelartiodactylaCamelus dromedarius
    GCA_000767585.1_PRJNA234474_Ca_dromedarius_V1.0    		9838
    323wild Bactrian camelartiodactylaCamelus ferus
    GCA_000311805.2_CB1    		419612
    324pygmy sperm whaleartiodactylaKogia breviceps27615
    325Chacoan peccaryartiodactylaCatagonus wagneri
    GCA_004024745.1_CatWag_v1_BIUU    		51154
    326reindeerartiodactylaRangifer tarandus
    GCA_004026565.1_RanTarSib_v1_BIUU    		9870
    327Pere David's deerartiodactylaElaphurus davidianus
    GCA_002443075.1_Milu1.0    		43332
    328okapiartiodactylaOkapia johnstoni
    GCA_001660835.1_ASM166083v1    		86973
    329Masai giraffeartiodactylaGiraffa tippelskirchi
    GCA_001651235.1_ASM165123v1    		439328
    330Siberian musk deerartiodactylaMoschus moschiferus
    GCA_004024705.1_MosMos_v1_BIUU    		68415
    331water buffaloartiodactylaBubalus bubalis
    GCA_000471725.1_UMD_CASPUR_WB_2.0    		89462
    332cowartiodactylaBos taurus
    GCA_000003205.6_Btau_5.0.1    		9913
    333pronghornartiodactylaAntilocapra americana
    GCA_004027515.1_AntAmePen_v1_BIUU    		9891
    334white-tailed deerartiodactylaOdocoileus virginianus
    GCA_002102435.1_Ovir.te_1.0    		9874
    335aoudadartiodactylaAmmotragus lervia
    GCA_002201775.1_ALER1.0    		9899
    336bighorn sheepartiodactylaOvis canadensis
    GCA_004026945.1_OviCan_v1_BIUU    		37174
    337goatartiodactylaCapra hircus
    GCA_001704415.1_ARS1    		9925
    338Nilgiri tahrartiodactylaHemitragus hylocrius
    GCA_004026825.1_HemHyl_v1_BIUU    		330464
    339hirolaartiodactylaBeatragus hunteri
    GCA_004027495.1_BeaHun_v1_BIUU    		59527
    340wild yakartiodactylaBos mutus
    bosMut1    		72004
    341American bisonartiodactylaBison bison
    GCA_000754665.1_Bison_UMD1.0    		9901
    342sheepartiodactylaOvis aries
    GCA_000298735.2_Oar_v4.0    		9940
    343chiruartiodactylaPantholops hodgsonii
    GCA_000400835.1_PHO1.0    		59538
    344wild goatartiodactylaCapra aegagrus
    GCA_000978405.1_CapAeg_1.0    		9923
    345Java mouse-deerartiodactylaTragulus javanicus
    GCA_004024965.1_TraJav_v1_BIUU    		9849
    346pigartiodactylaSus scrofa
    susScr3    		9823
    347zebu cattleartiodactylaBos indicus
    GCA_000247795.2_Bos_indicus_1.0    		9915
    348common bottlenose dolphinartiodactylaTursiops truncatus
    GCA_001922835.1_NIST_Tur_tru_v1    		9739
    349Saiga antelopeartiodactylaSaiga tatarica
    GCA_004024985.1_SaiTat_v1_BIUU    		34875
    350Chinese rufous horseshoe batchiropteraRhinolophus sinicus
    GCA_001888835.1_ASM188883v1    		89399
    351black flying foxchiropteraPteropus alecto
    pteAle1    		9402
    352Cantor's roundleaf batchiropteraHipposideros galeritus58069
    353Egyptian rousettechiropteraRousettus aegyptiacus
    GCA_004024865.1_RouAeg_v1_BIUU    		9407
    354long-tongued fruit batchiropteraMacroglossus sobrinus326083
    355large flying foxchiropteraPteropus vampyrus
    GCF_000151845.1_Pvam_2.0    		132908
    356Brazilian free-tailed batchiropteraTadarida brasiliensis
    GCA_004025005.1_TadBra_v1_BIUU    		9438
    357great roundleaf batchiropteraHipposideros armiger
    GCA_001890085.1_ASM189008v1    		186990
    358straw-colored fruit batchiropteraEidolon helvum
    eidHel1    		77214
    359Antillean ghost-faced batchiropteraMormoops blainvillei
    GCA_004026545.1_MorMeg_v1_BIUU    		118852
    360tailed tailless batchiropteraAnoura caudifer
    GCA_004027475.1_AnoCau_v1_BIUU    		27642
    361common vampire batchiropteraDesmodus rotundus
    GCA_002940915.2_ASM294091v2    		9430
    362hairy big-eared batchiropteraMicronycteris hirsuta
    GCA_004026765.1_MicHir_v1_BIUU    		148065
    363stripe-headed round-eared batchiropteraTonatia saurophila
    GCA_004024845.1_TonSau_v1_BIUU    		171122
    364Seba's short-tailed batchiropteraCarollia perspicillata
    GCA_004027735.1_CarPer_v1_BIUU    		40233
    365Jamaican fruit-eating batchiropteraArtibeus jamaicensis
    GCA_004027435.1_ArtJam_v1_BIUU    		9417
    366Indian false vampirechiropteraMegaderma lyra
    GCA_004026885.1_MegLyr_v1_BIUU    		9413
    367Schreibers' long-fingered batchiropteraMiniopterus schreibersii
    GCA_004026525.1_MinSch_v1_BIUU    		9433
    368greater bulldog batchiropteraNoctilio leporinus
    GCA_004026585.1_NocLep_v1_BIUU    		94963
    369Natal long-fingered batchiropteraMiniopterus natalensis
    GCF_001595765.1_Mnat.v1    		291302
    370hog-nosed batchiropteraCraseonycteris thonglongyai
    GCA_004027555.1_CraTho_v1_BIUU    		208972
    371Parnell's mustached batchiropteraPteronotus parnellii
    ptePar1    		59476
    372greater mouse-eared batchiropteraMyotis myotis
    GCA_004026985.1_MyoMyo_v1_BIUU    		51298
    373Ashy-gray tube-nosed batchiropteraMurina feae (Murina aurata feae)
    GCA_004026665.1_MurFea_v1_BIUU    		1453894
    374David's myotischiropteraMyotis davidii
    myoDav1    		225400
    375Brandt's batchiropteraMyotis brandtii
    myoBra1    		109478
    376big brown batchiropteraEptesicus fuscus
    GCF_000308155.1_EptFus1.0    		29078
    377red batchiropteraLasiurus borealis
    GCA_004026805.1_LasBor_v1_BIUU    		258930
    378little brown batchiropteraMyotis lucifugus
    myoLuc2    		59463
    379common pipistrellechiropteraPipistrellus pipistrellus
    GCA_004026625.1_PipPip_v1_BIUU    		59474
    380African savanna elephantafrotheriaLoxodonta africana
    GCA_000001905.1_Loxafr3.0    		9785
    381Florida manateeafrotheriaTrichechus manatus
    GCA_000243295.1_TriManLat1.0    		9778
    382yellow-spotted hyraxafrotheriaHeterohyrax brucei
    GCA_004026845.1_HetBruBak_v1_BIUU    		77598
    383Cape rock hyraxafrotheriaProcavia capensis
    GCA_004026925.1_ProCapCap_v1_BIUU    		9813
    384aardvarkafrotheriaOrycteropus afer9818
    385Cape golden moleafrotheriaChrysochloris asiatica
    GCA_004027935.1_ChrAsi_v1_BIUU    		185453
    386Cape elephant shrewafrotheriaElephantulus edwardii
    eleEdw1    		28737
    387Talazac's shrew tenrecafrotheriaMicrogale talazaci (Nesogale talazaci)
    GCA_004026705.1_MicTal_v1_BIUU    		2583312
    388small Madagascar hedgehogafrotheriaEchinops telfairi
    GCA_000313985.1_EchTel2.0    		9371
    389Sunda flying lemureuarchontogliresGaleopterus variegatus
    GCA_004027255.1_GalVar_v1_BIUU    		482537
    390Chinese tree shreweuarchontogliresTupaia chinensis
    tupChi1    		246437
    391South African ground squirreleuarchontogliresXerus inauris
    GCA_004024805.1_XerIna_v1_BIUU    		234690
    392large tree shreweuarchontogliresTupaia tana70687
    393mountain beavereuarchontogliresAplodontia rufa
    GCA_004027875.1_AplRuf_v1_BIUU    		51342
    394Alpine marmoteuarchontogliresMarmota marmota
    GCF_001458135.1_marMar2.1    		9993
    395Daurian ground squirreleuarchontogliresSpermophilus dauricus
    GCA_002406435.1_ASM240643v1    		99837
    396crested porcupineeuarchontogliresHystrix cristata
    GCA_004026905.1_HysCri_v1_BIUU    		10137
    397thirteen-lined ground squirreleuarchontogliresIctidomys tridecemlineatus
    speTri2    		43179
    398American beavereuarchontogliresCastor canadensis
    GCA_004027675.1_CasCan_v1_BIUU    		51338
    399long-tailed chinchillaeuarchontogliresChinchilla lanigera
    chiLan1    		34839
    400punctate agoutieuarchontogliresDasyprocta punctata34846
    401pacaranaeuarchontogliresDinomys branickii
    GCA_004027595.1_DinBra_v1_BIUU    		108858
    402fat dormouseeuarchontogliresGlis glis
    GCA_004027185.1_GliGli_v1_BIUU    		41261
    403northern gundieuarchontogliresCtenodactylus gundi
    GCA_004027205.1_CteGun_v1_BIUU    		10166
    404naked mole-rateuarchontogliresHeterocephalus glaber
    GCA_000247695.1_HetGla_female_1.0    		10181
    405Patagonian cavyeuarchontogliresDolichotis patagonum
    GCA_004027295.1_DolPat_v1_BIUU    		29091
    406capybaraeuarchontogliresHydrochoerus hydrochaeris
    GCA_004027455.1_HydHyd_v1_BIUU    		10149
    407Montane guinea pigeuarchontogliresCavia tschudii
    GCA_004027695.1_CavTsc_v1_BIUU    		143287
    408domestic guinea pigeuarchontogliresCavia porcellus
    GCA_000151735.1_Cavpor3.0    		10141
    409degueuarchontogliresOctodon degus
    GCA_000260255.1_OctDeg1.0    		10160
    410lowland pacaeuarchontogliresCuniculus paca108852
    411social tuco-tucoeuarchontogliresCtenomys sociabilis
    GCA_004027165.1_CteSoc_v1_BIUU    		43321
    412Damara mole-rateuarchontogliresFukomys damarensis
    fukDam1    		885580
    413woodland dormouseeuarchontogliresGraphiurus murinus51346
    414Desmarest's hutiaeuarchontogliresCapromys pilorides
    GCA_004027915.1_CapPil_v1_BIUU    		34842
    415Upper Galilee mountains blind mole rateuarchontogliresNannospalax galili
    GCA_000622305.1_S.galili_v1.0    		1026970
    416nutriaeuarchontogliresMyocastor coypus
    GCA_004027025.1_MyoCoy_v1_BIUU    		10157
    417hazel dormouseeuarchontogliresMuscardinus avellanarius
    GCA_004027005.1_MusAve_v1_BIUU    		39082
    418dassie-rateuarchontogliresPetromus typicus
    GCA_004026965.1_PetTyp_v1_BIUU    		10183
    419greater cane rateuarchontogliresThryonomys swinderianus
    GCA_004025085.1_ThrSwi_v1_BIUU    		10169
    420snowshoe hareeuarchontogliresLepus americanus
    GCA_004026855.1_LepAme_v1_BIUU    		48086
    421Gambian giant pouched rateuarchontogliresCricetomys gambianus
    GCA_004027575.1_CriGam_v1_BIUU    		10085
    422Prairie deer mouseeuarchontogliresPeromyscus maniculatus
    GCF_000500345.1_Pman_1.0    		10042
    423southern grasshopper mouseeuarchontogliresOnychomys torridus
    GCA_004026725.1_OnyTor_v1_BIUU    		38674
    424rabbiteuarchontogliresOryctolagus cuniculus
    GCA_000003625.1_OryCun2.0    		9986
    425muskrateuarchontogliresOndatra zibethicus
    GCA_004026605.1_OndZib_v1_BIUU    		10060
    426northern mole voleeuarchontogliresEllobius talpinus
    GCA_001685095.1_ETalpinus_0.1    		329620
    427Mongolian gerbileuarchontogliresMeriones unguiculatus
    GCA_004026785.1_MerUng_v1_BIUU    		10047
    428fat sand rateuarchontogliresPsammomys obesus
    GCA_002215935.1_ASM221593v1    		48139
    429house mouseeuarchontogliresMus musculus
    mm10    		10090
    430Chinese hamstereuarchontogliresCricetulus griseus
    GCA_900186095.1_CHOK1S_HZDv1    		10029
    431Norway rateuarchontogliresRattus norvegicus
    GCF_000001895.5_Rnor_6.0    		10116
    432western wild mouseeuarchontogliresMus spretus
    GCA_001624865.1_SPRET_EiJ_v1    		10096
    433meadow jumping mouseeuarchontogliresZapus hudsonius
    GCA_004024765.1_ZapHud_v1_BIUU    		160400
    434prairie voleeuarchontogliresMicrotus ochrogaster
    micOch1    		79684
    435Ryukyu mouseeuarchontogliresMus caroli
    GCA_900094665.2_CAROLI_EIJ_v1.1    		10089
    436Egyptian spiny mouseeuarchontogliresAcomys cahirinus
    GCA_004027535.1_AcoCah_v1_BIUU    		10068
    437Gobi jerboaeuarchontogliresAllactaga bullata (Orientallactaga bullata)
    GCA_004027895.1_AllBul_v1_BIUU    		1041416
    438shrew mouseeuarchontogliresMus pahari
    GCF_900095145.1_PAHARI_EIJ_v1.1    		10093
    439Transcaucasian mole voleeuarchontogliresEllobius lutescens
    GCA_001685075.1_ASM168507v1    		39086
    440hispid cotton rateuarchontogliresSigmodon hispidus
    GCA_004025045.1_SigHis_v1_BIUU    		42415
    441lesser Egyptian jerboaeuarchontogliresJaculus jaculus
    GCA_000280705.1_JacJac1.0    		51337
    442Brazilian guinea pigeuarchontogliresCavia aperea
    cavApe1    		37548
    443golden hamstereuarchontogliresMesocricetus auratus
    GCA_000349665.1_MesAur1.0    		10036
    444Stephens's kangaroo rateuarchontogliresDipodomys stephensi
    GCA_004024685.1_DipSte_v1_BIUU    		323379
    445American pikaeuarchontogliresOchotona princeps
    GCA_000292845.1_OchPri3.0    		9978
    446Ord's kangaroo rateuarchontogliresDipodomys ordii
    dipOrd2    		10020
    447little pocket mouseeuarchontogliresPerognathus longimembris38669

    \ Table 1. Genome assemblies included in the 447-way Conservation track.\

    \ \ \

    References

    \

    \ Kuderna LFK, Ulirsch JC, Rashid S, Ameen M, Sundaram L, Hickey G, Cox AJ, Gao H, Kumar A, Aguet F\ et al.\ \ Identification of constrained sequence elements across 239 primate genomes.\ Nature. 2023 Nov 29;.\ DOI: 10.1038/s41586-023-06798-8; PMID: 38030727\

    \

    \ Kuderna LFK, Gao H, Janiak MC, Kuhlwilm M, Orkin JD, Bataillon T, Manu S, Valenzuela A, Bergman J,\ Rousselle M et al.\ \ A global catalog of whole-genome diversity from 233 primate species.\ Science. 2023 Jun 2;380(6648):906-913.\ DOI: 10.1126/science.abn7829;\ PMID: 37262161\

    \

    \ Zoonomia Consortium.\ \ A comparative genomics multitool for scientific discovery and conservation.\ Nature. 2020 Nov;587(7833):240-245.\ DOI: 10.1038/s41586-020-2876-6; PMID: 33177664; PMC: PMC7759459\

    \

    \ Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC et\ al.\ \ Dense sampling of bird diversity increases power of comparative genomics.\ Nature. 2020 Nov;587(7833):252-257.\ DOI: 10.1038/s41586-020-2873-9; PMID: 33177665; PMC: PMC7759463\

    \

    \ Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q, Xie D, Feng S, Stiller J\ et al.\ \ Progressive Cactus is a multiple-genome aligner for the thousand-genome era.\ Nature. 2020 Nov;587(7833):246-251.\ DOI: 10.1038/s41586-020-2871-y; PMID: 33177663; PMC: PMC7673649\

    \ compGeno 1 altColor 0,90,10\ bigDataUrl https://hgdownload.soe.ucsc.edu/goldenPath/hg38/cactus447way/hg38.cactus447way.bb\ color 0, 10, 100\ frames https://hgdownload.soe.ucsc.edu/goldenPath/hg38/cactus447way/cactus447wayFrames.bb\ group compGeno\ irows on\ itemFirstCharCase noChange\ longLabel Cactus alignment on 447 mammal species, including Zoonomia genomes\ noInherit on\ parent cons447wayViewalign\ sGroup_Afrotheria Loxodonta_africana Trichechus_manatus Heterohyrax_brucei Procavia_capensis Orycteropus_afer Chrysochloris_asiatica Elephantulus_edwardii Microgale_talazaci Echinops_telfairi\ sGroup_Artiodactyla Eubalaena_japonica Eschrichtius_robustus Hippopotamus_amphibius Balaenoptera_acutorostrata Delphinapterus_leucas Balaenoptera_bonaerensis Inia_geoffrensis Phocoena_phocoena Monodon_monoceros Lipotes_vexillifer Orcinus_orca Platanista_gangetica Neophocaena_asiaeorientalis Mesoplodon_bidens Vicugna_pacos Ziphius_cavirostris Camelus_bactrianus Camelus_dromedarius Camelus_ferus Kogia_breviceps Catagonus_wagneri Rangifer_tarandus Elaphurus_davidianus Okapia_johnstoni Giraffa_tippelskirchi Moschus_moschiferus Bubalus_bubalis Bos_taurus Antilocapra_americana Odocoileus_virginianus Ammotragus_lervia Ovis_canadensis Capra_hircus Hemitragus_hylocrius Beatragus_hunteri Bos_mutus Bison_bison Ovis_aries Pantholops_hodgsonii Capra_aegagrus Tragulus_javanicus Sus_scrofa Bos_indicus Tursiops_truncatus Saiga_tatarica\ sGroup_Carnivora Panthera_onca Panthera_pardus Ailuropoda_melanoleuca Neomonachus_schauinslandi Zalophus_californianus Canis_lupus_orion Odobenus_rosmarus Felis_catus_fca126 Mirounga_angustirostris Felis_catus Canis_lupus_VD CanFam4 Canis_lupus_dingo Nyctereutes_procyonoides Cryptoprocta_ferox Ursus_maritimus Paradoxurus_hermaphroditus Lycaon_pictus Vulpes_lagopus Canis_lupus_familiaris Hyaena_hyaena Acinonyx_jubatus Panthera_tigris Enhydra_lutris Pteronura_brasiliensis Otocyon_megalotis Leptonychotes_weddellii Ailurus_fulgens Mellivora_capensis Mungos_mungo Helogale_parvula Suricata_suricatta Puma_concolor Felis_nigripes Mustela_putorius Spilogale_gracilis\ sGroup_Chiroptera Rhinolophus_sinicus Pteropus_alecto Hipposideros_galeritus Rousettus_aegyptiacus Macroglossus_sobrinus Pteropus_vampyrus Tadarida_brasiliensis Hipposideros_armiger Eidolon_helvum Mormoops_blainvillei Anoura_caudifer Desmodus_rotundus Micronycteris_hirsuta Tonatia_saurophila Carollia_perspicillata Artibeus_jamaicensis Megaderma_lyra Miniopterus_schreibersii Noctilio_leporinus Miniopterus_natalensis Craseonycteris_thonglongyai Pteronotus_parnellii Myotis_myotis Murina_feae Myotis_davidii Myotis_brandtii Eptesicus_fuscus Lasiurus_borealis Myotis_lucifugus Pipistrellus_pipistrellus\ sGroup_Euarchontoglires Galeopterus_variegatus Tupaia_chinensis Xerus_inauris Tupaia_tana Aplodontia_rufa Marmota_marmota Spermophilus_dauricus Hystrix_cristata Ictidomys_tridecemlineatus Castor_canadensis Chinchilla_lanigera Dasyprocta_punctata Dinomys_branickii Glis_glis Ctenodactylus_gundi Heterocephalus_glaber Dolichotis_patagonum Hydrochoerus_hydrochaeris Cavia_tschudii Cavia_porcellus Octodon_degus Cuniculus_paca Ctenomys_sociabilis Fukomys_damarensis Graphiurus_murinus Capromys_pilorides Nannospalax_galili Myocastor_coypus Muscardinus_avellanarius Petromus_typicus Thryonomys_swinderianus Lepus_americanus Cricetomys_gambianus Peromyscus_maniculatus Onychomys_torridus Oryctolagus_cuniculus Ondatra_zibethicus Ellobius_talpinus Meriones_unguiculatus Psammomys_obesus Mus_musculus Cricetulus_griseus Rattus_norvegicus Mus_spretus Zapus_hudsonius Microtus_ochrogaster Mus_caroli Acomys_cahirinus Allactaga_bullata Mus_pahari Ellobius_lutescens Sigmodon_hispidus Jaculus_jaculus Cavia_aperea Mesocricetus_auratus Dipodomys_stephensi Ochotona_princeps Dipodomys_ordii Perognathus_longimembris\ sGroup_Laurasiatheria Dicerorhinus_sumatrensis Diceros_bicornis Tapirus_indicus Tapirus_terrestris Ceratotherium_simum_cottoni Equus_asinus Ceratotherium_simum Equus_przewalskii Equus_caballus Manis_javanica Manis_pentadactyla Solenodon_paradoxus Scalopus_aquaticus Uropsilus_gracilis Condylura_cristata Erinaceus_europaeus Sorex_araneus Crocidura_indochinensis\ sGroup_Primates_catarrhini Pan_troglodytes Gorilla_gorilla Gorilla_beringei Pongo_abelii Pongo_pygmaeus Macaca_mulatta Theropithecus_gelada Macaca_arctoides Miopithecus_ogouensis Macaca_fascicularis Allenopithecus_nigroviridis Symphalangus_syndactylus Lophocebus_aterrimus Mandrillus_leucophaeus Macaca_radiata Cercocebus_torquatus Cercocebus_chrysogaster Cercopithecus_hamlyni Macaca_siberu Macaca_nemestrina Cercocebus_lunulatus Macaca_tonkeana Cercopithecus_diana Erythrocebus_patas Macaca_leonina Macaca_maura Papio_papio Papio_hamadryas Macaca_silenus Papio_anubis Cercopithecus_roloway Papio_kindae Papio_ursinus Allochrocebus_solatus Rhinopithecus_roxellana Chlorocebus_pygerythrus Cercocebus_atys Chlorocebus_sabaeus Cercopithecus_neglectus Papio_cynocephalus Macaca_nigra Nasalis_larvatus Allochrocebus_preussi Cercopithecus_nictitans Presbytis_comata Cercopithecus_albogularis Allochrocebus_lhoesti Cercopithecus_pogonias Presbytis_mitrata Pygathrix_cinerea Cercopithecus_mona Cercopithecus_petaurista Chlorocebus_aethiops Cercopithecus_lowei Nomascus_annamensis Nomascus_gabriellae Macaca_fuscata Piliocolobus_badius Nomascus_siki_a Nomascus_siki_b Macaca_cyclopis Pygathrix_nigripes_a Pygathrix_nigripes_b Colobus_polykomos Nomascus_concolor Piliocolobus_gordonorum Trachypithecus_geei Hylobates_klossii Trachypithecus_obscurus Piliocolobus_kirkii Trachypithecus_germaini Trachypithecus_hatinhensis Cercopithecus_cephus Trachypithecus_laotum Trachypithecus_francoisi Semnopithecus_vetulus Trachypithecus_pileatus Piliocolobus_tephrosceles Trachypithecus_auratus Cercopithecus_ascanius Trachypithecus_cristatus Semnopithecus_johnii Trachypithecus_crepusculus Trachypithecus_leucocephalus Pan_paniscus Hylobates_agilis Trachypithecus_melamera Semnopithecus_schistaceus Hylobates_abbotti Hylobates_muelleri Semnopithecus_priam Semnopithecus_hypoleucos Colobus_guereza Semnopithecus_entellus Hylobates_pileatus_a Hylobates_pileatus_b Rhinopithecus_bieti Rhinopithecus_strykeri Colobus_angolensis Macaca_thibetana Trachypithecus_phayrei Macaca_assamensis Hoolock_leuconedys Mandrillus_sphinx\ sGroup_Primates_platyrrhini Pithecia_chrysocephala Pithecia_hirsuta Pithecia_pithecia Pithecia_mittermeieri Pithecia_albicans Pithecia_pissinattii Pithecia_vanzolinii Cacajao_calvus Cacajao_ayresi Cacajao_melanocephalus Cacajao_hosomi Chiropotes_sagulatus Chiropotes_israelita Cheracebus_lugens Plecturocebus_brunneus Plecturocebus_hoffmannsi Plecturocebus_miltoni Cheracebus_torquatus Plecturocebus_cinerascens Plecturocebus_bernhardi Cheracebus_lucifer Plecturocebus_cupreus Plecturocebus_caligatus Plecturocebus_dubius Plecturocebus_moloch Plecturocebus_grovesi Ateles_geoffroyi_a Atele_geoffroyi_b Cheracebus_regulus Ateles_paniscus Ateles_chamek Ateles_marginatus Ateles_belzebuth Lagothrix_lagothricha Sapajus_macrocephalus Cebus_unicolor Cebus_olivaceus Alouatta_palliata Cebus_albifrons Aotus_trivirgatus Aotus_griseimembra Alouatta_caraya Aotus_vociferans Alouatta_belzebul Alouatta_discolor Aotus_azarae Alouatta_puruensis Alouatta_nigerrima Alouatta_macconnelli Alouatta_juara Alouatta_seniculus Sapajus_apella Aotus_nancymaae Saimiri_boliviensis Chiropotes_albinasus Leontocebus_nigricollis Leontocebus_fuscicollis Leontocebus_illigeri Saguinus_oedipus Saguinus_bicolor Saguinus_geoffroyi Saguinus_inustus Saguinus_mystax Saguinus_imperator Saimiri_sciureus Saguinus_labiatus Callimico_goeldii Saimiri_oerstedii Leontopithecus_chrysomelas Leontopithecus_rosalia Saimiri_cassiquiarensis Saimiri_ustus Saimiri_macrodon Callithrix_jacchus Cebuella_niveiventris Cebuella_pygmaea Mico_humeralifer Callibella_humilis Mico_spnv Mico_argentatus Saguinus_midas Callithrix_kuhlii Callithrix_geoffroyi\ sGroup_Primates_strepsirrhini Daubentonia_madagascariensis Propithecus_coronatus Propithecus_perrieri Varecia_variegata Propithecus_diadema Propithecus_edwardsi Indri_indri Propithecus_tattersalli Avahi_laniger Propithecus_verreauxi Avahi_peyrierasi Varecia_rubra Prolemur_simus Eulemur_rubriventer Eulemur_mongoz Cheirogaleus_major Eulemur_coronatus Eulemur_macaco Cheirogaleus_medius Eulemur_flavifrons Propithecus_coquerelli Eulemur_collaris Lepilemur_ruficaudatus Eulemur_rufus Eulemur_sanfordi Eulemur_albifrons Lepilemur_dorsalis Eulemur_fulvus Lepilemur_septentrionalis Hapalemur_occidentalis Hapalemur_alaotrensis Hapalemur_griseus Lepilemur_ankaranensis Lemur_catta Hapalemur_gilberti Hapalemur_meridionalis Galagoides_demidoff Mirza_zaza Microcebus_murinus Otolemur_garnettii Galago_senegalensis Otolemur_crassicaudatus Loris_lydekkerianus Loris_tardigradus Perodicticus_potto Perodicticus_ibeanus Galago_moholi Nycticebus_pygmaeus Nycticebus_bengalensis Arctocebus_calabarensis Nycticebus_coucang\ sGroup_Primates_tarsiidae Cephalopachus_bancanus Carlito_syrichta Tarsius_lariang Tarsius_wallacei\ sGroup_Xenarthra Choloepus_hoffmanni Dasypus_novemcinctus Myrmecophaga_tridactyla Tamandua_tetradactyla Tolypeutes_matacus Choloepus_didactylus Chaetophractus_vellerosus\ shortLabel Cactus 447-way\ speciesCodonDefault hg38\ speciesDefaultOff Pongo_abelii Gorilla_beringei Pan_troglodytes Pongo_pygmaeus Macaca_mulatta Theropithecus_gelada Macaca_arctoides Miopithecus_ogouensis Macaca_fascicularis Allenopithecus_nigroviridis Symphalangus_syndactylus Lophocebus_aterrimus Mandrillus_leucophaeus Macaca_radiata Cercocebus_torquatus Cercocebus_chrysogaster Cercopithecus_hamlyni Macaca_siberu Macaca_nemestrina Cercocebus_lunulatus Macaca_tonkeana Cercopithecus_diana Erythrocebus_patas Macaca_leonina Macaca_maura Papio_papio Papio_hamadryas Macaca_silenus Papio_anubis Cercopithecus_roloway Papio_kindae Papio_ursinus Allochrocebus_solatus Rhinopithecus_roxellana Chlorocebus_pygerythrus Cercocebus_atys Chlorocebus_sabaeus Cercopithecus_neglectus Papio_cynocephalus Macaca_nigra Nasalis_larvatus Allochrocebus_preussi Cercopithecus_nictitans Presbytis_comata Cercopithecus_albogularis Allochrocebus_lhoesti Cercopithecus_pogonias Presbytis_mitrata Pygathrix_cinerea Cercopithecus_mona Cercopithecus_petaurista Chlorocebus_aethiops Cercopithecus_lowei Nomascus_annamensis Nomascus_gabriellae Macaca_fuscata Piliocolobus_badius Nomascus_siki_a Nomascus_siki_b Macaca_cyclopis Pygathrix_nigripes_a Pygathrix_nigripes_b Colobus_polykomos Nomascus_concolor Piliocolobus_gordonorum Trachypithecus_geei Hylobates_klossii Trachypithecus_obscurus Piliocolobus_kirkii Trachypithecus_germaini Trachypithecus_hatinhensis Cercopithecus_cephus Trachypithecus_laotum Trachypithecus_francoisi Semnopithecus_vetulus Trachypithecus_pileatus Piliocolobus_tephrosceles Trachypithecus_auratus Cercopithecus_ascanius Trachypithecus_cristatus Semnopithecus_johnii Trachypithecus_crepusculus Trachypithecus_leucocephalus Pan_paniscus Hylobates_agilis Semnopithecus_schistaceus Hylobates_abbotti Hylobates_muelleri Trachypithecus_melamera Semnopithecus_priam Semnopithecus_hypoleucos Colobus_guereza Semnopithecus_entellus Hylobates_pileatus_a Hylobates_pileatus_b Rhinopithecus_bieti Rhinopithecus_strykeri Colobus_angolensis Macaca_thibetana Trachypithecus_phayrei Macaca_assamensis Pithecia_chrysocephala Pithecia_hirsuta Pithecia_pithecia Pithecia_mittermeieri Pithecia_albicans Hoolock_leuconedys Pithecia_pissinattii Pithecia_vanzolinii Cacajao_calvus Cacajao_ayresi Cacajao_melanocephalus Cacajao_hosomi Chiropotes_sagulatus Chiropotes_israelita Cheracebus_lugens Plecturocebus_brunneus Plecturocebus_hoffmannsi Plecturocebus_miltoni Cheracebus_torquatus Plecturocebus_cinerascens Plecturocebus_bernhardi Cheracebus_lucifer Plecturocebus_cupreus Plecturocebus_caligatus Plecturocebus_dubius Plecturocebus_moloch Plecturocebus_grovesi Ateles_geoffroyi_a Cheracebus_regulus Ateles_paniscus Ateles_chamek Ateles_marginatus Ateles_belzebuth Lagothrix_lagothricha Sapajus_macrocephalus Cebus_unicolor Cebus_olivaceus Alouatta_palliata Cebus_albifrons Aotus_trivirgatus Aotus_griseimembra Alouatta_caraya Aotus_vociferans Alouatta_belzebul Alouatta_discolor Aotus_azarae Alouatta_puruensis Alouatta_nigerrima Alouatta_macconnelli Alouatta_juara Alouatta_seniculus Sapajus_apella Aotus_nancymaae Saimiri_boliviensis Chiropotes_albinasus Leontocebus_nigricollis Leontocebus_fuscicollis Leontocebus_illigeri Saguinus_oedipus Saguinus_bicolor Saguinus_geoffroyi Saguinus_inustus Saguinus_mystax Saguinus_imperator Saimiri_sciureus Saguinus_labiatus Callimico_goeldii Saimiri_oerstedii Leontopithecus_chrysomelas Leontopithecus_rosalia Saimiri_cassiquiarensis Saimiri_ustus Saimiri_macrodon Callithrix_jacchus Cebuella_niveiventris Cebuella_pygmaea Mico_humeralifer Callibella_humilis Mico_spnv Mico_argentatus Saguinus_midas Callithrix_kuhlii Callithrix_geoffroyi Daubentonia_madagascariensis Cephalopachus_bancanus Carlito_syrichta Mandrillus_sphinx Galeopterus_variegatus Tarsius_lariang Propithecus_coronatus Propithecus_perrieri Varecia_variegata Propithecus_diadema Propithecus_edwardsi Indri_indri Propithecus_tattersalli Avahi_laniger Propithecus_verreauxi Tarsius_wallacei Avahi_peyrierasi Varecia_rubra Prolemur_simus Eulemur_rubriventer Eulemur_mongoz Cheirogaleus_major Eulemur_coronatus Eulemur_macaco Cheirogaleus_medius Eulemur_flavifrons Propithecus_coquerelli Eulemur_collaris Lepilemur_ruficaudatus Eulemur_rufus Eulemur_sanfordi Eulemur_albifrons Lepilemur_dorsalis Eulemur_fulvus Lepilemur_septentrionalis Hapalemur_occidentalis Hapalemur_alaotrensis Hapalemur_griseus Lepilemur_ankaranensis Lemur_catta Hapalemur_gilberti Hapalemur_meridionalis Galagoides_demidoff Mirza_zaza Microcebus_murinus Otolemur_garnettii Galago_senegalensis Otolemur_crassicaudatus Loris_lydekkerianus Loris_tardigradus Perodicticus_potto Perodicticus_ibeanus Galago_moholi Nycticebus_pygmaeus Nycticebus_bengalensis Arctocebus_calabarensis Nycticebus_coucang Dicerorhinus_sumatrensis Diceros_bicornis Tapirus_indicus Tapirus_terrestris Ceratotherium_simum_cottoni Equus_asinus Ceratotherium_simum Equus_przewalskii Equus_caballus Panthera_onca Panthera_pardus Ailuropoda_melanoleuca Neomonachus_schauinslandi Zalophus_californianus Canis_lupus_orion Odobenus_rosmarus Felis_catus_fca126 Mirounga_angustirostris Felis_catus Canis_lupus_VD CanFam4 Canis_lupus_dingo Nyctereutes_procyonoides Cryptoprocta_ferox Ursus_maritimus Paradoxurus_hermaphroditus Lycaon_pictus Vulpes_lagopus Canis_lupus_familiaris Hyaena_hyaena Acinonyx_jubatus Panthera_tigris Eubalaena_japonica Enhydra_lutris Eschrichtius_robustus Pteronura_brasiliensis Otocyon_megalotis Leptonychotes_weddellii Hippopotamus_amphibius Ailurus_fulgens Mellivora_capensis Rhinolophus_sinicus Pteropus_alecto Mungos_mungo Helogale_parvula Suricata_suricatta Puma_concolor Manis_javanica Balaenoptera_acutorostrata Felis_nigripes Mustela_putorius Hipposideros_galeritus Delphinapterus_leucas Rousettus_aegyptiacus Balaenoptera_bonaerensis Inia_geoffrensis Phocoena_phocoena Monodon_monoceros Lipotes_vexillifer Orcinus_orca Platanista_gangetica Macroglossus_sobrinus Neophocaena_asiaeorientalis Pteropus_vampyrus Mesoplodon_bidens Spilogale_gracilis Vicugna_pacos Ziphius_cavirostris Tupaia_chinensis Tadarida_brasiliensis Hipposideros_armiger Camelus_bactrianus Xerus_inauris Camelus_dromedarius Eidolon_helvum Choloepus_hoffmanni Camelus_ferus Kogia_breviceps Tupaia_tana Dasypus_novemcinctus Manis_pentadactyla Loxodonta_africana Trichechus_manatus Myrmecophaga_tridactyla Tamandua_tetradactyla Aplodontia_rufa Tolypeutes_matacus Choloepus_didactylus Catagonus_wagneri Marmota_marmota Spermophilus_dauricus Solenodon_paradoxus Mormoops_blainvillei Hystrix_cristata Anoura_caudifer Heterohyrax_brucei Procavia_capensis Desmodus_rotundus Micronycteris_hirsuta Orycteropus_afer Rangifer_tarandus Tonatia_saurophila Elaphurus_davidianus Okapia_johnstoni Giraffa_tippelskirchi Moschus_moschiferus Ictidomys_tridecemlineatus Bubalus_bubalis Bos_taurus Antilocapra_americana Odocoileus_virginianus Ammotragus_lervia Ovis_canadensis Castor_canadensis Capra_hircus Hemitragus_hylocrius Beatragus_hunteri Bos_mutus Carollia_perspicillata Artibeus_jamaicensis Chinchilla_lanigera Bison_bison Dasyprocta_punctata Dinomys_branickii Ovis_aries Megaderma_lyra Pantholops_hodgsonii Glis_glis Miniopterus_schreibersii Ctenodactylus_gundi Noctilio_leporinus Miniopterus_natalensis Heterocephalus_glaber Dolichotis_patagonum Capra_aegagrus Tragulus_javanicus Hydrochoerus_hydrochaeris Cavia_tschudii Cavia_porcellus Sus_scrofa Octodon_degus Craseonycteris_thonglongyai Cuniculus_paca Ctenomys_sociabilis Chaetophractus_vellerosus Fukomys_damarensis Graphiurus_murinus Capromys_pilorides Nannospalax_galili Bos_indicus Tursiops_truncatus Myocastor_coypus Muscardinus_avellanarius Saiga_tatarica Pteronotus_parnellii Petromus_typicus Myotis_myotis Thryonomys_swinderianus Murina_feae Lepus_americanus Myotis_davidii Myotis_brandtii Cricetomys_gambianus Eptesicus_fuscus Peromyscus_maniculatus Onychomys_torridus Oryctolagus_cuniculus Scalopus_aquaticus Ondatra_zibethicus Lasiurus_borealis Ellobius_talpinus Meriones_unguiculatus Psammomys_obesus Mus_musculus Cricetulus_griseus Rattus_norvegicus Mus_spretus Zapus_hudsonius Chrysochloris_asiatica Microtus_ochrogaster Mus_caroli Acomys_cahirinus Allactaga_bullata Mus_pahari Ellobius_lutescens Sigmodon_hispidus Uropsilus_gracilis Jaculus_jaculus Myotis_lucifugus Cavia_aperea Pipistrellus_pipistrellus Mesocricetus_auratus Elephantulus_edwardii Dipodomys_stephensi Ochotona_princeps Dipodomys_ordii Perognathus_longimembris Condylura_cristata Microgale_talazaci Echinops_telfairi Erinaceus_europaeus Sorex_araneus\ speciesDefaultOn Gorilla_gorilla Pongo_abelii Pithecia_chrysocephala Pithecia_hirsuta Cephalopachus_bancanus Carlito_syrichta Daubentonia_madagascariensis Propithecus_coronatus Panthera_onca Panthera_pardus Dicerorhinus_sumatrensis Diceros_bicornis Choloepus_hoffmanni Dasypus_novemcinctus Eubalaena_japonica Eschrichtius_robustus Rhinolophus_sinicus Pteropus_alecto Loxodonta_africana Trichechus_manatus Galeopterus_variegatus Tupaia_chinensis Dipodomys_ordii Perognathus_longimembris\ speciesGroups Primates_catarrhini Primates_platyrrhini Primates_tarsiidae Primates_strepsirrhini Carnivora Laurasiatheria Xenarthra Artiodactyla Chiroptera Afrotheria Euarchontoglires\ speciesLabels Acinonyx_jubatus="cheetah" Acomys_cahirinus="Egyptian spiny mouse" Ailuropoda_melanoleuca="giant panda" Ailurus_fulgens="Lesser panda" Allactaga_bullata="Gobi jerboa" Allenopithecus_nigroviridis="Allen's swamp monkey" Allochrocebus_lhoesti="L'Hoest's monkey" Allochrocebus_preussi="Preuss's monkey" Allochrocebus_solatus="Sun-tailed monkey" Alouatta_palliata="mantled howler" Alouatta_belzebul="Eastern Red-handed howler" Alouatta_caraya="black-and-gold howler" Alouatta_discolor="Spix's Red-handed howler" Alouatta_juara="Jurua red howler monkey" Alouatta_macconnelli="Guianan red howler" Alouatta_nigerrima="Amazon black howler" Alouatta_puruensis="Purús red howler monkey" Alouatta_seniculus="Colombian red howler" Ammotragus_lervia="aoudad" Anoura_caudifer="tailed tailless bat" Antilocapra_americana="pronghorn" Aotus_nancymaae="Ma's night monkey" Aotus_azarae="Azara's night monkey" Aotus_griseimembra="Gray-legged Night monkey" Aotus_trivirgatus="Humboldt's night monkey" Aotus_vociferans="Spix's night monkey" Aplodontia_rufa="mountain beaver" Arctocebus_calabarensis="Calabar Angwantibo" Artibeus_jamaicensis="Jamaican fruit-eating bat" Ateles_geoffroyi="Central American spider monkey" Ateles_belzebuth="white-bellied spider monkey" Ateles_chamek="black spider monkey" Ateles_marginatus="white-whiskered spider monkey" Ateles_paniscus="Red-faced black spider monkey" Avahi_laniger="Eastern Woolly lemur" Avahi_peyrierasi="Peyrieras's Woolly lemur" Balaenoptera_bonaerensis="Antarctic minke whale" Balaenoptera_acutorostrata="Minke whale" Beatragus_hunteri="hirola" Bison_bison="American bison" Bos_indicus="zebu cattle" Bos_mutus="wild yak" Bos_taurus="cow" Bubalus_bubalis="water buffalo" Cacajao_ayresi="Araca Uakari" Cacajao_calvus="Bald Uakari" Cacajao_hosomi="Neblina black Uakari" Cacajao_melanocephalus="Golden-brown Uakari" Callibella_humilis="black-crowned Dwarf Marmoset" Callimico_goeldii="Goeldi's monkey" Callithrix_jacchus="common marmoset" Callithrix_geoffroyi="Geoffroy's tufted-ear marmoset" Callithrix_kuhlii="Wied's Marmoset" Camelus_bactrianus="Bactrian camel" Camelus_dromedarius="Arabian camel" Camelus_ferus="wild Bactrian camel" CanFam4="German Shepherd dog (Mischka)" Canis_lupus_dingo="dingo" Canis_lupus_familiaris="dog" Canis_lupus_VD="domestic dog (BS72/Village Dog)" Canis_lupus_orion="Greenland wolf" Capra_aegagrus="wild goat" Capra_hircus="goat" Capromys_pilorides="Desmarest's hutia" Carlito_syrichta="Philippine tarsier" Carollia_perspicillata="Seba's short-tailed bat" Castor_canadensis="American beaver" Catagonus_wagneri="Chacoan peccary" Cavia_aperea="Brazilian guinea pig" Cavia_porcellus="domestic guinea pig" Cavia_tschudii="Montane guinea pig" Cebuella_niveiventris="Southern Pygmy Marmoset" Cebuella_pygmaea="Northern Pygmy Marmoset" Cebus_albifrons="white-fronted capuchin" Cebus_olivaceus="Guinan Weeper capuchin" Cebus_unicolor="Spix's white-fronted capuchin" Cephalopachus_bancanus="Western tarsier" Ceratotherium_simum_cottoni="northern white rhinoceros" Ceratotherium_simum="Southern white rhinoceros" Cercocebus_atys="sooty mangabey" Cercocebus_chrysogaster="Golden-bellied Mangabey" Cercocebus_lunulatus="white-naped Mangabey" Cercocebus_torquatus="Red-capped Mangabey" Cercopithecus_mona="Mona monkey" Cercopithecus_neglectus="De Brazza's monkey" Cercopithecus_ascanius="Red-tailed monkey" Cercopithecus_cephus="Mustached monkey" Cercopithecus_diana="Diana monkey" Cercopithecus_hamlyni="Owl-faced monkey" Cercopithecus_lowei="Lowe's monkey" Cercopithecus_albogularis="Sykes' monkey" Cercopithecus_nictitans="Putty-nosed monkey" Cercopithecus_petaurista="Spot-nosed monkey" Cercopithecus_pogonias="Crowned monkey" Cercopithecus_roloway="Roloway monkey" Chaetophractus_vellerosus="screaming hairy armadillo" Cheirogaleus_medius="fat-tailed dwarf lemur" Cheirogaleus_major="Greater Dwarf lemur" Cheracebus_lucifer="Yellow-handed Titi" Cheracebus_lugens="white-chested Titi" Cheracebus_regulus="Rio Jurua Collared Titi" Cheracebus_torquatus="white-collared Titi" Chinchilla_lanigera="long-tailed chinchilla" Chiropotes_albinasus="Red-nosed Bearded saki" Chiropotes_israelita="Spix's Bearded saki" Chiropotes_sagulatus="Guianan Bearded saki" Chlorocebus_aethiops="grivet monkey" Chlorocebus_sabaeus="green monkey" Chlorocebus_pygerythrus="Vervet monkey" Choloepus_didactylus="southern two-toed sloth" Choloepus_hoffmanni="Hoffmann's two-fingered sloth" Chrysochloris_asiatica="Cape golden mole" Colobus_guereza="guereza" Colobus_angolensis="Angolan colobus" Colobus_polykomos="King Colobus" Condylura_cristata="star-nosed mole" Craseonycteris_thonglongyai="hog-nosed bat" Cricetomys_gambianus="Gambian giant pouched rat" Cricetulus_griseus="Chinese hamster" Crocidura_indochinensis="Indochinese shrew" Cryptoprocta_ferox="fossa" Ctenodactylus_gundi="northern gundi" Ctenomys_sociabilis="social tuco-tuco" Cuniculus_paca="lowland paca" Dasyprocta_punctata="punctate agouti" Dasypus_novemcinctus="nine-banded armadillo" Daubentonia_madagascariensis="aye-aye" Delphinapterus_leucas="beluga whale" Desmodus_rotundus="common vampire bat" Dicerorhinus_sumatrensis="Sumatran rhinoceros" Diceros_bicornis="black rhinoceros" Dinomys_branickii="pacarana" Dipodomys_ordii="Ord's kangaroo rat" Dipodomys_stephensi="Stephens's kangaroo rat" Dolichotis_patagonum="Patagonian cavy" Echinops_telfairi="small Madagascar hedgehog" Eidolon_helvum="straw-colored fruit bat" Elaphurus_davidianus="Pere David's deer" Elephantulus_edwardii="Cape elephant shrew" Ellobius_lutescens="Transcaucasian mole vole" Ellobius_talpinus="northern mole vole" Enhydra_lutris="Sea otter" Eptesicus_fuscus="big brown bat" Equus_asinus="ass" Equus_caballus="horse" Equus_przewalskii="Przewalski's horse" Erinaceus_europaeus="western European hedgehog" Erythrocebus_patas="common Patas monkey" Eschrichtius_robustus="grey whale" Eubalaena_japonica="North Pacific right whale" Eulemur_flavifrons="blue-eyed black lemur" Eulemur_fulvus="brown lemur" Eulemur_macaco="black lemur" Eulemur_mongoz="mongoose lemur" Eulemur_albifrons="white-fronted brown lemur" Eulemur_collaris="Red-collared brown lemur" Eulemur_coronatus="Crowned lemur" Eulemur_rubriventer="Red-bellied lemur" Eulemur_rufus="Rufous brown lemur" Eulemur_sanfordi="Sanford's brown lemur" Felis_catus="domestic cat" Felis_nigripes="black-footed cat" Felis_catus_fca126="domestic cat (Fca126)" Fukomys_damarensis="Damara mole-rat" Galago_moholi="southern leser galago" Galago_senegalensis="Northern Lesser Galago" Galagoides_demidoff="Demidoff's Dwarf Galago" Galeopterus_variegatus="Sunda flying lemur" Giraffa_tippelskirchi="Masai giraffe" Glis_glis="fat dormouse" Gorilla_gorilla="western gorilla" Gorilla_beringei="Eastern Gorilla" Graphiurus_murinus="woodland dormouse" Hapalemur_alaotrensis="Lac Alaotra Bamboo lemur" Hapalemur_gilberti="Gilbert's Gray Bamboo lemur" Hapalemur_griseus="Common Gray Bamboo lemur" Hapalemur_meridionalis="Southern Bamboo lemur" Hapalemur_occidentalis="Northern Bamboo lemur" Helogale_parvula="dwarf mongoose" Hemitragus_hylocrius="Nilgiri tahr" Heterocephalus_glaber="naked mole-rat" Heterohyrax_brucei="yellow-spotted hyrax" Hippopotamus_amphibius="hippopotamus" Hipposideros_armiger="great roundleaf bat" Hipposideros_galeritus="Cantor's roundleaf bat" Hoolock_leuconedys="Eastern hoolock Gibbon" Hyaena_hyaena="striped hyena" Hydrochoerus_hydrochaeris="capybara" Hylobates_pileatus_a="pileated gibbon" Hylobates_pileatus_b="pileated gibbon" Hylobates_abbotti="Western gray gibbon" Hylobates_agilis="agile gibbon" Hylobates_klossii="Kloss's gibbon" Hylobates_muelleri="Southern gray gibbon" Hystrix_cristata="crested porcupine" Ictidomys_tridecemlineatus="thirteen-lined ground squirrel" Indri_indri="indri" Inia_geoffrensis="boutu" Jaculus_jaculus="lesser Egyptian jerboa" Kogia_breviceps="pygmy sperm whale" Lagothrix_lagothricha="Common Woolly monkey" Lasiurus_borealis="red bat" Lemur_catta="ring-tailed lemur" Leontocebus_fuscicollis="Spix's Saddle-back tamarin" Leontocebus_illigeri="Illiger's Saddle-back tamarin" Leontocebus_nigricollis="black-mantled tamarin" Leontopithecus_rosalia="golden lion tamarin" Leontopithecus_chrysomelas="Golden-headed Lion tamarin" Lepilemur_ankaranensis="Ankarana sportive lemur" Lepilemur_dorsalis="Gray's sportive lemur" Lepilemur_ruficaudatus="Red-tailed sportive lemur" Lepilemur_septentrionalis="Sahafary sportive lemur" Leptonychotes_weddellii="Weddell seal" Lepus_americanus="snowshoe hare" Lipotes_vexillifer="Yangtze River dolphin" Lophocebus_aterrimus="black crested mangabey" Loris_tardigradus="red slender loris" Loris_lydekkerianus="Gray Slender Loris" Loxodonta_africana="African savanna elephant" Lycaon_pictus="African hunting dog" Macaca_arctoides="stump-tailed macaque" Macaca_assamensis="Assamese macaque" Macaca_cyclopis="Taiwanexe macaque" Macaca_fascicularis="long-tailed macaque" Macaca_mulatta="Rhesus macaque" Macaca_nemestrina="southern pig-tailed macaque" Macaca_nigra="crested macaque" Macaca_silenus="lion-tailed macaque" Macaca_fuscata="Japanese macaque" Macaca_leonina="Northern Pig-tailed Macaque" Macaca_maura="Moor Macaque" Macaca_radiata="Bonnet Macaque" Macaca_siberu="Siberut Macaque" Macaca_thibetana="Tibetan Macaque" Macaca_tonkeana="Tonkean Macaque" Macroglossus_sobrinus="long-tongued fruit bat" Mandrillus_leucophaeus="drill" Mandrillus_sphinx="mandrill" Manis_javanica="Malayan pangolin" Manis_pentadactyla="Chinese pangolin" Marmota_marmota="Alpine marmot" Megaderma_lyra="Indian false vampire" Mellivora_capensis="ratel" Meriones_unguiculatus="Mongolian gerbil" Mesocricetus_auratus="golden hamster" Mesoplodon_bidens="Sowerby's beaked whale" Mico_argentatus="silvery marmoset" Mico_humeralifer="Santarem marmoset" Mico_spnv="Schneider's marmoset" Microcebus_murinus="gray mouse lemur" Microgale_talazaci="Talazac's shrew tenrec" Micronycteris_hirsuta="hairy big-eared bat" Microtus_ochrogaster="prairie vole" Miniopterus_natalensis="Natal long-fingered bat" Miniopterus_schreibersii="Schreibers' long-fingered bat" Miopithecus_ogouensis="Northern Talapoin monkey" Mirounga_angustirostris="northern elephant seal" Mirza_zaza="northern giant mouse lemur" Monodon_monoceros="narwhal" Mormoops_blainvillei="Antillean ghost-faced bat" Moschus_moschiferus="Siberian musk deer" Mungos_mungo="banded mongoose" Murina_feae="Ashy-gray tube-nosed bat" Mus_caroli="Ryukyu mouse" Mus_musculus="house mouse" Mus_pahari="shrew mouse" Mus_spretus="western wild mouse" Muscardinus_avellanarius="hazel dormouse" Mustela_putorius="European polecat" Myocastor_coypus="nutria" Myotis_brandtii="Brandt's bat" Myotis_davidii="David's myotis" Myotis_lucifugus="little brown bat" Myotis_myotis="greater mouse-eared bat" Myrmecophaga_tridactyla="giant anteater" Nannospalax_galili="Upper Galilee mountains blind mole rat" Nasalis_larvatus="proboscis monkey" Neomonachus_schauinslandi="Hawaiian monk seal" Neophocaena_asiaeorientalis="Yangtze finless porpoise" Noctilio_leporinus="greater bulldog bat" Nomascus_siki_a="southern white-cheeked crested gibbon" Nomascus_siki_b="southern white-cheeked crested gibbon" Nomascus_annamensis="Northern yellow-cheeked crested gibbon" Nomascus_concolor="Western black crested gibbon" Nomascus_gabriellae="Southern yellow-cheeked crested gibbon" Nyctereutes_procyonoides="raccoon dog" Nycticebus_bengalensis="Bengal slow loris" Nycticebus_coucang="Malaysian slow loris" Nycticebus_pygmaeus="Pygmy Slow Loris" Ochotona_princeps="American pika" Octodon_degus="degu" Odobenus_rosmarus="Pacific walrus" Odocoileus_virginianus="white-tailed deer" Okapia_johnstoni="okapi" Ondatra_zibethicus="muskrat" Onychomys_torridus="southern grasshopper mouse" Orcinus_orca="killer whale" Orycteropus_afer="aardvark" Oryctolagus_cuniculus="rabbit" Otocyon_megalotis="bat-eared fox" Otolemur_garnettii="Garnetts greater galago" Otolemur_crassicaudatus="Thick-tailed Greater Galago" Ovis_aries="sheep" Ovis_canadensis="bighorn sheep" Pan_paniscus="bonobo" Pan_troglodytes="chimpanzee" Panthera_onca="jaguar" Panthera_pardus="leopard" Panthera_tigris="tiger" Pantholops_hodgsonii="chiru" Papio_anubis="olive baboon" Papio_hamadryas="hamadryas baboon" Papio_cynocephalus="Yellow Baboon" Papio_kindae="Kinda Baboon" Papio_papio="Guinea Baboon" Papio_ursinus="Chacma Baboon" Paradoxurus_hermaphroditus="Asian palm civet" Perodicticus_ibeanus="East African Potto" Perodicticus_potto="West African Potto" Perognathus_longimembris="little pocket mouse" Peromyscus_maniculatus="Prairie deer mouse" Petromus_typicus="dassie-rat" Phocoena_phocoena="harbor porpoise" Piliocolobus_tephrosceles="Ashy red Colobus" Piliocolobus_badius="Upper Guinea red Colobus" Piliocolobus_gordonorum="Udzungwa red Colobus" Piliocolobus_kirkii="Zanzibar red Colobus" Pipistrellus_pipistrellus="common pipistrelle" Pithecia_pithecia="white-faced saki" Pithecia_albicans="Buffy saki" Pithecia_chrysocephala="Golden-faced saki" Pithecia_hirsuta="Hairy saki" Pithecia_mittermeieri="Mittermeier's saki" Pithecia_pissinattii="Pissinatti's saki" Pithecia_vanzolinii="Vanzolini's bald-faced saki" Platanista_gangetica="Ganges River dolphin" Plecturocebus_bernhardi="Prince Bernhard's Titi" Plecturocebus_brunneus="brown Titi" Plecturocebus_caligatus="Chestnut-bellied Titi" Plecturocebus_cinerascens="Ashy Titi" Plecturocebus_cupreus="Coppery Titi" Plecturocebus_dubius="Hershkovitzs Titi" Plecturocebus_grovesi="Groves's Titi" Plecturocebus_hoffmannsi="Hoffmanns's Titi" Plecturocebus_miltoni="Milton's Titi" Plecturocebus_moloch="Red-bellied Titi" Pongo_abelii="Sumatran orangutan" Pongo_pygmaeus="Bornean orangutan" Presbytis_comata="Javan langur" Presbytis_mitrata="Mitered langur" Procavia_capensis="Cape rock hyrax" Prolemur_simus="greater bamboo lemur" Propithecus_coquerelli="Coquerel's Sifaka" Propithecus_coronatus="Crowned Sifaka" Propithecus_diadema="Diademed Sifaka" Propithecus_edwardsi="Milne-Edward's Sifaka" Propithecus_perrieri="Perrier's Sifaka" Propithecus_tattersalli="Tattersall's Sifaka" Propithecus_verreauxi="Verreaux's Sifaka" Psammomys_obesus="fat sand rat" Pteronotus_parnellii="Parnell's mustached bat" Pteronura_brasiliensis="giant otter" Pteropus_alecto="black flying fox" Pteropus_vampyrus="large flying fox" Puma_concolor="puma" Pygathrix_nigripes_a="black-shanked douc" Pygathrix_nigripes_b="black-shanked douc" Pygathrix_cinerea="gray-shanked douc" Rangifer_tarandus="reindeer" Rattus_norvegicus="Norway rat" Rhinolophus_sinicus="Chinese rufous horseshoe bat" Rhinopithecus_bieti="Yunnan snub-nosed monkey" Rhinopithecus_roxellana="golden snub-nosed monkey" Rhinopithecus_strykeri="Stryker's snub-nosed monkey" Rousettus_aegyptiacus="Egyptian rousette" Saguinus_imperator="Emperor tamarin" Saguinus_midas="Midas tamarin" Saguinus_bicolor="Pied Bare-faced tamarin" Saguinus_geoffroyi="Geoffroy's tamarin" Saguinus_inustus="Mottled-face tamarin" Saguinus_labiatus="Red-bellied tamarin" Saguinus_mystax="Mustached tamarin" Saguinus_oedipus="Cotton-top tamarin" Saiga_tatarica="Saiga antelope" Saimiri_boliviensis="black-capped squirrel monkey" Saimiri_cassiquiarensis="Humboldt's squirrel monkey" Saimiri_macrodon="Ecuadorian squirrel monkey" Saimiri_oerstedii="Central American squirrel monkey" Saimiri_sciureus="Guianan squirrel monkey" Saimiri_ustus="Golden-backed squirrel monkey" Sapajus_apella="brown capuchin" Sapajus_macrocephalus="large-headed capuchin" Scalopus_aquaticus="eastern mole" Semnopithecus_entellus="Bengal sacred langur" Semnopithecus_hypoleucos="Malabar Sacred langur" Semnopithecus_johnii="Nilgiri langur" Semnopithecus_priam="Tufted Gray langur" Semnopithecus_schistaceus="Nepal Sacred langur" Semnopithecus_vetulus="Purple-faced langur" Sigmodon_hispidus="hispid cotton rat" Solenodon_paradoxus="Hispaniolan solenodon" Sorex_araneus="European shrew" Spermophilus_dauricus="Daurian ground squirrel" Spilogale_gracilis="western spotted skunk" Suricata_suricatta="meerkat" Sus_scrofa="pig" Symphalangus_syndactylus="siamang" Tadarida_brasiliensis="Brazilian free-tailed bat" Tamandua_tetradactyla="southern tamandua" Tapirus_indicus="Asiatic tapir" Tapirus_terrestris="Brazilian tapir" Tarsius_lariang="Lariang tarsier" Tarsius_wallacei="Wallace's tarsier" Theropithecus_gelada="gelada" Thryonomys_swinderianus="greater cane rat" Tolypeutes_matacus="placentals" Tonatia_saurophila="stripe-headed round-eared bat" Trachypithecus_francoisi="Francois's langur" Trachypithecus_auratus="East Javan Langur" Trachypithecus_crepusculus="Indochinese Gray Langur" Trachypithecus_cristatus="Sunda Silvery Langur" Trachypithecus_geei="Golden langur" Trachypithecus_germaini="Germain's langur" Trachypithecus_hatinhensis="Hatinh langur" Trachypithecus_laotum="Laos langur" Trachypithecus_leucocephalus="white-headed langur" Trachypithecus_melamera="Shan langur" Trachypithecus_obscurus="Dusky langur" Trachypithecus_phayrei="Phayre's langur" Trachypithecus_pileatus="capped langur" Tragulus_javanicus="Java mouse-deer" Trichechus_manatus="Florida manatee" Tupaia_chinensis="Chinese tree shrew" Tupaia_tana="large tree shrew" Tursiops_truncatus="common bottlenose dolphin" Uropsilus_gracilis="gracile shrew mole" Ursus_maritimus="polar bear" Varecia_variegata="black-and-white ruffed lemur" Varecia_rubra="red ruffed lemur" Vicugna_pacos="alpaca" Vulpes_lagopus="Arctic fox" Xerus_inauris="South African ground squirrel" Zalophus_californianus="California sea lion" Zapus_hudsonius="meadow jumping mouse" Ziphius_cavirostris="Cuvier's beaked whale"\ subGroups view=align\ summary https://hgdownload.soe.ucsc.edu/goldenPath/hg38/cactus447way/cactus447waySummary.bb\ track cactus447way\ treeImage phylo/hg38_447way.png\ type bigMaf\ viewUi on\ caddSuper CADD bed CADD 1.6 Score for all single-basepair mutations and selected insertions/deletions 0 100 100 130 160 177 192 207 0 0 0

    Description

    \ \

    This track collection shows Combined Annotation Dependent Depletion scores.\ CADD is a tool for scoring the deleteriousness of single nucleotide variants as\ well as insertion/deletion variants in the human genome.

    \ \

    \ Some mutation annotations\ tend to exploit a single information type (e.g., phastCons or phyloP for\ conservation) and/or are restricted in scope (e.g., to missense changes). Thus,\ a broadly applicable metric that objectively weights and integrates diverse\ information is needed. Combined Annotation Dependent Depletion (CADD) is a\ framework that integrates multiple annotations into one metric by contrasting\ variants that survived natural selection with simulated mutations.\

    \ \

    \ CADD scores strongly correlate with allelic diversity, pathogenicity of both\ coding and non-coding variants, experimentally measured regulatory effects,\ and also rank causal variants within individual genome sequences with a higher\ value than non-causal variants. \ Finally, CADD scores of complex trait-associated variants from genome-wide\ association studies (GWAS) are significantly higher than matched controls and\ correlate with study sample size, likely reflecting the increased accuracy of\ larger GWAS.\

    \ \

    \ A CADD score represents a ranking not a prediction, and no threshold is defined\ for a specific purpose. Higher scores are more likely to be deleterious: \ Scores are \ \ 

      10 * -log of the rank
    \ \ so that variants with scores above 20 are \ predicted to be among the 1.0% most deleterious possible substitutions in \ the human genome. We recommend thinking carefully about what threshold is \ appropriate for your application.\

    \ \

    Display Conventions and Configuration

    \

    \ There are six subtracks of this track: four for single-nucleotide mutations,\ one for each base, showing all possible substitutions, \ one for insertions and one for deletions. All subtracks show the CADD Phred\ score on mouseover. Zooming in shows the exact score on mouseover, same\ basepair = score 0.0.

    \

    \ PHRED-scaled scores are normalized to all potential ~9 billion SNVs, and\ thereby provide an externally comparable unit for analysis. For example, a\ scaled score of 10 or greater indicates a raw score in the top 10% of all\ possible reference genome SNVs, and a score of 20 or greater indicates a raw\ score in the top 1%, regardless of the details of the annotation set, model\ parameters, etc.\

    \

    \ The four single-nucleotide mutation tracks have a default viewing range of\ score 10 to 50. As explained in the paragraph above, that results in\ slightly less than 10% of the data displayed. The \ deletion and insertion tracks have a default filter of 10-100, because they\ display discrete items and not graphical data.\

    \ \

    \ Single nucleotide variants (SNV): For SNVs, at every\ genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing \ the reference allele, e.g., A to A, is always set to zero.\

    \

    \ When using this track, zoom in until you can see every basepair at the\ top of the display. Otherwise, there are several nucleotides per pixel under \ your mouse cursor and instead of an actual score, the tooltip text will show\ the average score of all nucleotides under the cursor. This is indicated by\ the prefix "~" in the mouseover. Averages of scores are not useful for any\ application of CADD.\

    \ \

    Insertions and deletions: Scores are also shown on mouseover for a\ set of insertions and deletions. On hg38, the set has been obtained from\ gnomAD3. On hg19, the set of indels has been obtained from various sources\ (gnomAD2, ExAC, 1000 Genomes, ESP). If your insertion or deleletion of interest\ is not in the track, you will need to use CADD's\ online scoring tool\ to obtain them.

    \ \

    Data access

    \

    \ CADD scores are freely available for all non-commercial applications from\ the CADD website.\ For commercial applications, see\ the license instructions there.\

    \ \

    \ The CADD data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ The files for this track are called a.bw, c.bw, g.bw, t.bw, ins.bb and del.bb. Individual\ regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\
    \ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd/a.bw stdout\
    \ or\
    \ bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd/ins.bb stdout

    \ \

    Methods

    \ \

    \ Data were converted from the files provided on\ the CADD Downloads website,\ provided by the Kircher lab, using\ \ custom Python scripts, \ documented in our \ makeDoc files.\

    \ \

    Credits

    \

    \ Thanks to the CADD development team for providing precomputed data as simple tab-separated files.\

    \ \

    References

    \

    \ Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J.\ \ A general framework for estimating the relative pathogenicity of human genetic variants.\ Nat Genet. 2014 Mar;46(3):310-5.\ PMID: 24487276;\ PMC: PMC3992975\

    \ \

    \ Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M.\ \ CADD: predicting the deleteriousness of variants throughout the human genome.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D886-D894.\ PMID: 30371827;\ PMC: PMC6323892\

    \ phenDis 1 color 100,130,160\ group phenDis\ longLabel CADD 1.6 Score for all single-basepair mutations and selected insertions/deletions\ shortLabel CADD\ superTrack on hide\ track caddSuper\ type bed\ visibility hide\ cadd CADD bigWig CADD 1.6 Score for all possible single-basepair mutations (zoom in for scores) 1 100 100 130 160 177 192 207 0 0 0

    Description

    \ \

    This track collection shows Combined Annotation Dependent Depletion scores.\ CADD is a tool for scoring the deleteriousness of single nucleotide variants as\ well as insertion/deletion variants in the human genome.

    \ \

    \ Some mutation annotations\ tend to exploit a single information type (e.g., phastCons or phyloP for\ conservation) and/or are restricted in scope (e.g., to missense changes). Thus,\ a broadly applicable metric that objectively weights and integrates diverse\ information is needed. Combined Annotation Dependent Depletion (CADD) is a\ framework that integrates multiple annotations into one metric by contrasting\ variants that survived natural selection with simulated mutations.\

    \ \

    \ CADD scores strongly correlate with allelic diversity, pathogenicity of both\ coding and non-coding variants, experimentally measured regulatory effects,\ and also rank causal variants within individual genome sequences with a higher\ value than non-causal variants. \ Finally, CADD scores of complex trait-associated variants from genome-wide\ association studies (GWAS) are significantly higher than matched controls and\ correlate with study sample size, likely reflecting the increased accuracy of\ larger GWAS.\

    \ \

    \ A CADD score represents a ranking not a prediction, and no threshold is defined\ for a specific purpose. Higher scores are more likely to be deleterious: \ Scores are \ \ 

      10 * -log of the rank
    \ \ so that variants with scores above 20 are \ predicted to be among the 1.0% most deleterious possible substitutions in \ the human genome. We recommend thinking carefully about what threshold is \ appropriate for your application.\

    \ \

    Display Conventions and Configuration

    \

    \ There are six subtracks of this track: four for single-nucleotide mutations,\ one for each base, showing all possible substitutions, \ one for insertions and one for deletions. All subtracks show the CADD Phred\ score on mouseover. Zooming in shows the exact score on mouseover, same\ basepair = score 0.0.

    \

    \ PHRED-scaled scores are normalized to all potential ~9 billion SNVs, and\ thereby provide an externally comparable unit for analysis. For example, a\ scaled score of 10 or greater indicates a raw score in the top 10% of all\ possible reference genome SNVs, and a score of 20 or greater indicates a raw\ score in the top 1%, regardless of the details of the annotation set, model\ parameters, etc.\

    \

    \ The four single-nucleotide mutation tracks have a default viewing range of\ score 10 to 50. As explained in the paragraph above, that results in\ slightly less than 10% of the data displayed. The \ deletion and insertion tracks have a default filter of 10-100, because they\ display discrete items and not graphical data.\

    \ \

    \ Single nucleotide variants (SNV): For SNVs, at every\ genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing \ the reference allele, e.g., A to A, is always set to zero.\

    \

    \ When using this track, zoom in until you can see every basepair at the\ top of the display. Otherwise, there are several nucleotides per pixel under \ your mouse cursor and instead of an actual score, the tooltip text will show\ the average score of all nucleotides under the cursor. This is indicated by\ the prefix "~" in the mouseover. Averages of scores are not useful for any\ application of CADD.\

    \ \

    Insertions and deletions: Scores are also shown on mouseover for a\ set of insertions and deletions. On hg38, the set has been obtained from\ gnomAD3. On hg19, the set of indels has been obtained from various sources\ (gnomAD2, ExAC, 1000 Genomes, ESP). If your insertion or deleletion of interest\ is not in the track, you will need to use CADD's\ online scoring tool\ to obtain them.

    \ \

    Data access

    \

    \ CADD scores are freely available for all non-commercial applications from\ the CADD website.\ For commercial applications, see\ the license instructions there.\

    \ \

    \ The CADD data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ The files for this track are called a.bw, c.bw, g.bw, t.bw, ins.bb and del.bb. Individual\ regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\
    \ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd/a.bw stdout\
    \ or\
    \ bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd/ins.bb stdout

    \ \

    Methods

    \ \

    \ Data were converted from the files provided on\ the CADD Downloads website,\ provided by the Kircher lab, using\ \ custom Python scripts, \ documented in our \ makeDoc files.\

    \ \

    Credits

    \

    \ Thanks to the CADD development team for providing precomputed data as simple tab-separated files.\

    \ \

    References

    \

    \ Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J.\ \ A general framework for estimating the relative pathogenicity of human genetic variants.\ Nat Genet. 2014 Mar;46(3):310-5.\ PMID: 24487276;\ PMC: PMC3992975\

    \ \

    \ Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M.\ \ CADD: predicting the deleteriousness of variants throughout the human genome.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D886-D894.\ PMID: 30371827;\ PMC: PMC6323892\

    \ phenDis 0 color 100,130,160\ compositeTrack on\ group phenDis\ html caddSuper\ longLabel CADD 1.6 Score for all possible single-basepair mutations (zoom in for scores)\ maxWindowToDraw 10000000\ mouseOverFunction noAverage\ parent caddSuper\ shortLabel CADD\ track cadd\ type bigWig\ visibility dense\ cancerExpr Cancer Gene Expr Gene Expression in 33 TCGA Cancer Tissues (GENCODE v23) 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ \ The Cancer Genome Atlas (TCGA), a collaboration between the\ National Cancer Institute (NCI)\ and \ National Human Genome Research Institute (NHGRI), has generated comprehensive,\ multi-dimensional maps of the key genomic changes in 33 types of cancer. The TCGA\ dataset, 2.5 petabytes of data describing tumor tissue and matched normal tissues from\ more than 11,000 patients, is publically available and has been used widely by the\ research community.

    \ \

    \ The Cancer Genome Atlas is a NIH-funded project to catalog genetic mutations\ responsible for cancer. The data shown here is RNA-seq expression data produced by the\ consortium.

    \ \

    For questions or feedback on the data, please contact \ TCGA.\

    \ \

    TCGA Gene Expression

    \

    \ The gene track shows RNA expression level for each TCGA tissue in GENCODE canonical\ genes. The gene scores are a total of all transcripts in that gene.

    \ \

    TCGA Transcript Expression

    \

    \ The transcript track shows RNA expression levels for each TCGA tissue using GENCODE v23\ transcripts.

    \ \ \

    Display Conventions

    \

    \ In Full and Pack display modes, expression for each genomic item (gene/transcript) is\ represented by a colored bar chart, where the height of each bar represents the median\ expression level across all samples for a tissue, and the bar color indicates the\ tissue.

    \

    \

    \ The bar chart display has the same width and tissue order for all genomic items.\ Mouse hover over a bar will show the tissue and median expression levels.\ The Squish display mode draws a rectangle for each gene, colored to indicate the tissue\ with highest expression level if it contributes more than 10% to the overall expression\ (and colored black if no tissue predominates).\ In Dense mode, the darkness of the grayscale rectangle displayed for the gene reflects the total\ median expression level across all tissues.

    \ \

    \ This track was designed to be used in conjunction with the GTEx expression tracks that can act as a\ control.

    \ \

    \ The color of each cancer was derived by mapping the tissue of origin to the closest GTEx tissue,\ then taking the GTEx tissue's color. Five cancers did not have a matching GTEx tissue and were\ assigned a rainbow color scheme; these cancers are Cholangiocarcinoma, Esophageal carcinoma, Head\ and Neck squamous cell carcinoma, Sarcoma and Uveal Melanoma.

    \ \

    \ The ordering of the cancers is based on the alphabetical ordering of their GTEx tissues. The five\ cancers that did not match were ordered alphabetically.

    \ \

    Methods

    \ \

    TCGA chose cancers for study based on two broad criteria; poor prognosis/overall \ public health impact and availability of human tumor and matched normal tissue samples that meet \ TCGA\ standards.

    \ \

    \ RNA sequencing was performed using a polyA library and the Illumina HiSeq 2000 platform. All RNA\ sequencing was performed by UNC.

    \ \

    \ Sequence reads for this track were quantified to the hg38/GRCh38 human genome using kallisto\ assisted by the GENCODE v23 transcriptome definition. Read quantification was performed at UCSC by\ the Computational Genomics lab, using the \ Toil\ pipeline. The resulting kallisto files were combined to generate a transcript per million (tpm)\ expression matrix using the UCSC tool, kallistoToMatrix. By totaling the TPM values for all\ transcripts associated to the canonical transcript/gene, a condensed gene per million (gpm) matrix\ was made. For both matrices average expression values for each tissue were calculated and used to\ generate a bed6+5 file that is the base of each track. This was done using the UCSC tool,\ expMatrixToBarchartBed. The bed track was then converted to a bigBed file using the UCSC\ tool, bedToBigBed.

    \ \

    Credits

    \

    \ Data shown here are in whole based upon data generated by the \ TCGA Research Network.\ John Vivian, Melissa Cline, and Benedict Paten of the UCSC Computational Genomics lab were\ responsible for the sequence read quantification used to produce this track. Chris Eisenhart \ and Kate Rosenbloom of the UCSC Genome Browser group were responsible for data file\ post-processing, track configuration and display type.

    \ \

    References

    \

    \ J. Vivian et al., \ \ \ Rapid and efficient analysis of 20,000 RNA-seq samples with Toil\ bioRxiv bioRxiv, vol. 2, p. 62497, 2016.\

    \ phenDis 0 group phenDis\ html tcgaExpr\ longLabel Gene Expression in 33 TCGA Cancer Tissues (GENCODE v23)\ shortLabel Cancer Gene Expr\ superTrack on\ track cancerExpr\ tcgaGeneExpr Cancer Gene Expr bigBarChart Gene Expression in 33 TCGA Cancer Tissues (GENCODE v23) 3 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ \ The Cancer Genome Atlas (TCGA), a collaboration between the\ National Cancer Institute (NCI)\ and \ National Human Genome Research Institute (NHGRI), has generated comprehensive,\ multi-dimensional maps of the key genomic changes in 33 types of cancer. The TCGA\ dataset, 2.5 petabytes of data describing tumor tissue and matched normal tissues from\ more than 11,000 patients, is publically available and has been used widely by the\ research community.

    \ \

    \ The Cancer Genome Atlas is a NIH-funded project to catalog genetic mutations\ responsible for cancer. The data shown here is RNA-seq expression data produced by the\ consortium.

    \ \

    For questions or feedback on the data, please contact \ TCGA.\

    \ \

    TCGA Gene Expression

    \

    \ The gene track shows RNA expression level for each TCGA tissue in GENCODE canonical\ genes. The gene scores are a total of all transcripts in that gene.

    \ \

    TCGA Transcript Expression

    \

    \ The transcript track shows RNA expression levels for each TCGA tissue using GENCODE v23\ transcripts.

    \ \ \

    Display Conventions

    \

    \ In Full and Pack display modes, expression for each genomic item (gene/transcript) is\ represented by a colored bar chart, where the height of each bar represents the median\ expression level across all samples for a tissue, and the bar color indicates the\ tissue.

    \

    \

    \ The bar chart display has the same width and tissue order for all genomic items.\ Mouse hover over a bar will show the tissue and median expression levels.\ The Squish display mode draws a rectangle for each gene, colored to indicate the tissue\ with highest expression level if it contributes more than 10% to the overall expression\ (and colored black if no tissue predominates).\ In Dense mode, the darkness of the grayscale rectangle displayed for the gene reflects the total\ median expression level across all tissues.

    \ \

    \ This track was designed to be used in conjunction with the GTEx expression tracks that can act as a\ control.

    \ \

    \ The color of each cancer was derived by mapping the tissue of origin to the closest GTEx tissue,\ then taking the GTEx tissue's color. Five cancers did not have a matching GTEx tissue and were\ assigned a rainbow color scheme; these cancers are Cholangiocarcinoma, Esophageal carcinoma, Head\ and Neck squamous cell carcinoma, Sarcoma and Uveal Melanoma.

    \ \

    \ The ordering of the cancers is based on the alphabetical ordering of their GTEx tissues. The five\ cancers that did not match were ordered alphabetically.

    \ \

    Methods

    \ \

    TCGA chose cancers for study based on two broad criteria; poor prognosis/overall \ public health impact and availability of human tumor and matched normal tissue samples that meet \ TCGA\ standards.

    \ \

    \ RNA sequencing was performed using a polyA library and the Illumina HiSeq 2000 platform. All RNA\ sequencing was performed by UNC.

    \ \

    \ Sequence reads for this track were quantified to the hg38/GRCh38 human genome using kallisto\ assisted by the GENCODE v23 transcriptome definition. Read quantification was performed at UCSC by\ the Computational Genomics lab, using the \ Toil\ pipeline. The resulting kallisto files were combined to generate a transcript per million (tpm)\ expression matrix using the UCSC tool, kallistoToMatrix. By totaling the TPM values for all\ transcripts associated to the canonical transcript/gene, a condensed gene per million (gpm) matrix\ was made. For both matrices average expression values for each tissue were calculated and used to\ generate a bed6+5 file that is the base of each track. This was done using the UCSC tool,\ expMatrixToBarchartBed. The bed track was then converted to a bigBed file using the UCSC\ tool, bedToBigBed.

    \ \

    Credits

    \

    \ Data shown here are in whole based upon data generated by the \ TCGA Research Network.\ John Vivian, Melissa Cline, and Benedict Paten of the UCSC Computational Genomics lab were\ responsible for the sequence read quantification used to produce this track. Chris Eisenhart \ and Kate Rosenbloom of the UCSC Genome Browser group were responsible for data file\ post-processing, track configuration and display type.

    \ \

    References

    \

    \ J. Vivian et al., \ \ \ Rapid and efficient analysis of 20,000 RNA-seq samples with Toil\ bioRxiv bioRxiv, vol. 2, p. 62497, 2016.\

    \ phenDis 1 barChartBars Adrenocortical_carcinoma Bladder_Urothelial_Carcinoma Brain_Lower_Grade_Glioma Breast_invasive_carcinoma Cervical_squamous_cell_carcinoma_and_endocervical_adenocarcinoma Colon_adenocarcinoma Glioblastoma_multiforme Kidney_Chromophobe Kidney_renal_clear_cell_carcinoma Kidney_renal_papillary_cell_carcinoma Liver_hepatocellular_carcinoma Lung_adenocarcinoma Lung_squamous_cell_carcinoma Lymphoid_Neoplasm_Diffuse_Large_B-cell_Lymphoma Mesothelioma Ovarian_serous_cystadenocarcinoma Pancreatic_adenocarcinoma Pheochromocytoma_and_Paraganglioma Prostate_adenocarcinoma Rectum_adenocarcinoma Skin_Cutaneous_Melanoma Stomach_adenocarcinoma Testicular_Germ_Cell_Tumors Thymoma Thyroid_carcinoma Uterine_Carcinosarcoma Uterine_Corpus_Endometrioid_Carcinoma Cholangiocarcinoma Esophageal_carcinoma Head_and_Neck_squamous_cell_carcinoma Sarcoma Uveal_Melanoma\ barChartColors \\#8FBC8F #8FBC8F #CDB79E #EEEE00 #EEEE00 #00CDCD #EED5D2 \\#CDB79E #CDB79E #CDB79E #CDB79E #CDB79E #CDB79E #9ACD32 #9ACD32 #9ACD32 \\#FFB6C1 #CD9B1D #D9D9D9 #1E90FF #CDB79E #FFD39B #A6A6A6 #008B45 #008B45 \\#EED5D2 #EED5D2 #ff0000 #ff8d00 #ffdb00 #00d619 #009fff\ barChartLabel Cancer types\ barChartMatrixUrl /gbdb/hgFixed/human/expMatrix/tcgaGeneMatrix.tab\ barChartMetric median\ barChartSampleUrl /gbdb/hgFixed/human/expMatrix/tcgaLargeSamples.tab\ barChartUnit GPM\ bigDataUrl /gbdb/hg38/tcga/tcgaGeneExpr.bb\ defaultLabelFields name2\ group phenDis\ html tcgaExpr\ labelFields name2, name\ longLabel Gene Expression in 33 TCGA Cancer Tissues (GENCODE v23)\ maxLimit 8000\ parent cancerExpr\ shortLabel Cancer Gene Expr\ track tcgaGeneExpr\ type bigBarChart\ visibility pack\ tcgaTranscExpr Cancer Transc Expr bigBarChart Transcript-level Expression in 33 TCGA Cancer Tissues (GENCODE v23) 3 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ \ The Cancer Genome Atlas (TCGA), a collaboration between the\ National Cancer Institute (NCI)\ and \ National Human Genome Research Institute (NHGRI), has generated comprehensive,\ multi-dimensional maps of the key genomic changes in 33 types of cancer. The TCGA\ dataset, 2.5 petabytes of data describing tumor tissue and matched normal tissues from\ more than 11,000 patients, is publically available and has been used widely by the\ research community.

    \ \

    \ The Cancer Genome Atlas is a NIH-funded project to catalog genetic mutations\ responsible for cancer. The data shown here is RNA-seq expression data produced by the\ consortium.

    \ \

    For questions or feedback on the data, please contact \ TCGA.\

    \ \

    TCGA Gene Expression

    \

    \ The gene track shows RNA expression level for each TCGA tissue in GENCODE canonical\ genes. The gene scores are a total of all transcripts in that gene.

    \ \

    TCGA Transcript Expression

    \

    \ The transcript track shows RNA expression levels for each TCGA tissue using GENCODE v23\ transcripts.

    \ \ \

    Display Conventions

    \

    \ In Full and Pack display modes, expression for each genomic item (gene/transcript) is\ represented by a colored bar chart, where the height of each bar represents the median\ expression level across all samples for a tissue, and the bar color indicates the\ tissue.

    \

    \

    \ The bar chart display has the same width and tissue order for all genomic items.\ Mouse hover over a bar will show the tissue and median expression levels.\ The Squish display mode draws a rectangle for each gene, colored to indicate the tissue\ with highest expression level if it contributes more than 10% to the overall expression\ (and colored black if no tissue predominates).\ In Dense mode, the darkness of the grayscale rectangle displayed for the gene reflects the total\ median expression level across all tissues.

    \ \

    \ This track was designed to be used in conjunction with the GTEx expression tracks that can act as a\ control.

    \ \

    \ The color of each cancer was derived by mapping the tissue of origin to the closest GTEx tissue,\ then taking the GTEx tissue's color. Five cancers did not have a matching GTEx tissue and were\ assigned a rainbow color scheme; these cancers are Cholangiocarcinoma, Esophageal carcinoma, Head\ and Neck squamous cell carcinoma, Sarcoma and Uveal Melanoma.

    \ \

    \ The ordering of the cancers is based on the alphabetical ordering of their GTEx tissues. The five\ cancers that did not match were ordered alphabetically.

    \ \

    Methods

    \ \

    TCGA chose cancers for study based on two broad criteria; poor prognosis/overall \ public health impact and availability of human tumor and matched normal tissue samples that meet \ TCGA\ standards.

    \ \

    \ RNA sequencing was performed using a polyA library and the Illumina HiSeq 2000 platform. All RNA\ sequencing was performed by UNC.

    \ \

    \ Sequence reads for this track were quantified to the hg38/GRCh38 human genome using kallisto\ assisted by the GENCODE v23 transcriptome definition. Read quantification was performed at UCSC by\ the Computational Genomics lab, using the \ Toil\ pipeline. The resulting kallisto files were combined to generate a transcript per million (tpm)\ expression matrix using the UCSC tool, kallistoToMatrix. By totaling the TPM values for all\ transcripts associated to the canonical transcript/gene, a condensed gene per million (gpm) matrix\ was made. For both matrices average expression values for each tissue were calculated and used to\ generate a bed6+5 file that is the base of each track. This was done using the UCSC tool,\ expMatrixToBarchartBed. The bed track was then converted to a bigBed file using the UCSC\ tool, bedToBigBed.

    \ \

    Credits

    \

    \ Data shown here are in whole based upon data generated by the \ TCGA Research Network.\ John Vivian, Melissa Cline, and Benedict Paten of the UCSC Computational Genomics lab were\ responsible for the sequence read quantification used to produce this track. Chris Eisenhart \ and Kate Rosenbloom of the UCSC Genome Browser group were responsible for data file\ post-processing, track configuration and display type.

    \ \

    References

    \

    \ J. Vivian et al., \ \ \ Rapid and efficient analysis of 20,000 RNA-seq samples with Toil\ bioRxiv bioRxiv, vol. 2, p. 62497, 2016.\

    \ phenDis 1 barChartBars Adrenocortical_carcinoma Bladder_Urothelial_Carcinoma Brain_Lower_Grade_Glioma Breast_invasive_carcinoma Cervical_squamous_cell_carcinoma_and_endocervical_adenocarcinoma Colon_adenocarcinoma Glioblastoma_multiforme Kidney_Chromophobe Kidney_renal_clear_cell_carcinoma Kidney_renal_papillary_cell_carcinoma Liver_hepatocellular_carcinoma Lung_adenocarcinoma Lung_squamous_cell_carcinoma Lymphoid_Neoplasm_Diffuse_Large_B-cell_Lymphoma Mesothelioma Ovarian_serous_cystadenocarcinoma Pancreatic_adenocarcinoma Pheochromocytoma_and_Paraganglioma Prostate_adenocarcinoma Rectum_adenocarcinoma Skin_Cutaneous_Melanoma Stomach_adenocarcinoma Testicular_Germ_Cell_Tumors Thymoma Thyroid_carcinoma Uterine_Carcinosarcoma Uterine_Corpus_Endometrioid_Carcinoma Cholangiocarcinoma Esophageal_carcinoma Head_and_Neck_squamous_cell_carcinoma Sarcoma Uveal_Melanoma\ barChartColors \\#8FBC8F #8FBC8F #CDB79E #EEEE00 #EEEE00 #00CDCD #EED5D2 \\#CDB79E #CDB79E #CDB79E #CDB79E #CDB79E #CDB79E #9ACD32 #9ACD32 #9ACD32 \\#FFB6C1 #CD9B1D #D9D9D9 #1E90FF #CDB79E #FFD39B #A6A6A6 #008B45 #008B45 \\#EED5D2 #EED5D2 #ff0000 #ff8d00 #ffdb00 #00d619 #009fff\ barChartLabel Cancer types\ barChartMatrixUrl /gbdb/hgFixed/human/expMatrix/tcgaMatrix.tab\ barChartMetric median\ barChartSampleUrl /gbdb/hgFixed/human/expMatrix/tcgaLargeSamples.tab\ barChartUnit TPM\ bigDataUrl /gbdb/hg38/tcga/tcgaTranscExpr.bb\ defaultLabelFields name2\ group phenDis\ html tcgaExpr\ labelFields name2, name\ longLabel Transcript-level Expression in 33 TCGA Cancer Tissues (GENCODE v23)\ maxLimit 8000\ parent cancerExpr\ shortLabel Cancer Transc Expr\ track tcgaTranscExpr\ type bigBarChart\ visibility pack\ ccdsGene CCDS genePred Consensus CDS 0 100 12 120 12 133 187 133 0 0 0

    Description

    \

    \ This track shows human genome high-confidence gene annotations from the\ Consensus \ Coding Sequence (CCDS) project. This project is a collaborative effort \ to identify a core set of \ human protein-coding regions that are consistently annotated and of high \ quality. The long-term goal is to support convergence towards a standard set \ of gene annotations on the human genome.\

    \

    Collaborators include:\

    \ \

    \ For more information on the different gene tracks, see our Genes FAQ.

    \ \

    Methods

    \

    \ CDS annotations of the human genome were obtained from two sources:\ NCBI \ RefSeq and a union of the gene annotations from \ Ensembl and \ Vega, collectively known \ as Hinxton.

    \

    \ Genes with identical CDS genomic coordinates in both sets become CCDS \ candidates. The genes undergo a quality evaluation, which must be approved by \ all collaborators. The following criteria are currently used to assess each\ gene: \

      \
    • an initiating ATG (Exception: a non-ATG translation start codon is \ annotated if it has sufficient experimental support), a valid stop codon, and \ no in-frame stop codons (Exception: selenoproteins, which contain a TGA codon \ that is known to be translated to a selenocysteine instead of functioning as \ a stop codon) \
    • ability to be translated from the genome reference sequence without frameshifts\
    • recognizable splicing sites\
    • no intersection with putative pseudogene predictions\
    • supporting transcripts and protein homology\
    • conservation evidence with other species\

    \

    \ A unique CCDS ID is assigned to the CCDS, which links together all gene \ annotations with the same CDS. CCDS gene annotations are under continuous\ review, with periodic updates to this track.\

    \ \

    Credits

    \

    \ This track was produced at UCSC from data downloaded from the\ CCDS project \ web site.\

    \ \

    References

    \

    \ Hubbard T, Barker D, Birney E, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T et\ al.\ The Ensembl genome database project.\ Nucleic Acids Res. 2002 Jan 1;30(1):38-41.\ PMID: 11752248; PMC: PMC99161\

    \

    \ Pruitt KD, Harrow J, Harte RA, Wallin C, Diekhans M, Maglott DR, Searle S, Farrell CM, Loveland JE,\ Ruef BJ et al.\ \ The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the\ human and mouse genomes.\ Genome Res. 2009 Jul;19(7):1316-23.\ PMID: 19498102; PMC: PMC2704439\

    \

    \ Pruitt KD, Tatusova T, Maglott DR.\ \ NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts\ and proteins.\ Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.\ PMID: 15608248; PMC: PMC539979\

    \ genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 12,120,12\ group genes\ longLabel Consensus CDS\ shortLabel CCDS\ track ccdsGene\ type genePred\ visibility hide\ centromeres Centromeres bed 4 . Centromere Locations 0 100 255 0 0 255 127 127 0 0 24 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX,chrY, https://www.ncbi.nlm.nih.gov/nuccore/$$

    Description

    \

    \ Track indicating the location of the centromere sequences.\ Centromeres are specialized chromatin structures that are required for cell division. These\ genomic regions are normally defined by long tracts of tandem repeats, or satellite DNA, that\ contain a limited number of sequence differences to distinguish the linear order of repeat copies.\ The size and repetitive nature of these regions mean they are typically not represented in\ reference assemblies. Unlike all previous versions of the human reference assembly, where the\ centromere regions have been represented by a multi-megabase gap, GRCh38 incorporates centromere\ reference models that provide an initial genomic description derived from chromosome-assigned whole\ genome shotgun (WGS) read libraries of alpha satellite.\

    \ \

    \ Each reference model provides an approximation of the true array sequence organization.\ Although the long-range repeat ordering is not expected to represent the true organization,\ the submissions are expected to provide a biologically rich description of array variants and\ local-monomer organization as observed in the initial WGS read dataset. As a result, these\ sequences serve as a useful mapping target to extend sequence-based studies to sites previously\ omitted from the human reference genome.\

    \ \

    Methods

    \

    \ The sequences are generated based on second-order Markov models of monomer\ variants, and graphical models of larger scale higher order repeats.\ The graphical models are based on an analysis of Sanger reads from the\ HuRef sequencing project (Assembly\ GCA_000002125.1; BioProject\ PRJNA19621),\ and their local-ordering is supported by observed same-read monomer\ adjacencies. The Markov models are generated by the program linearSat, which\ was written for this project and that also generates a linear representation\ of monomer order. The software linearSat generates a second-order Markov\ chain to the size of a given array provided by sequence coverage normalization\ estimates. The sequence definitions of transposable element insertions are\ limited to the sequences directly adjacent to alpha satellite within the read\ database, and incomplete representations are noted with an adjacent\ 100 bp gap. In total, these sequences provide a more complete reference\ of sequence composition and higher order repeat variation inherent to a\ given alpha satellite array, used to assemble centromeric regions of the\ human chromosomes.\

    \ \

    Credits

    \

    \ The data for this track was supplied by\ Karen Miga.\

    \ \

    References

    \

    \ Miga KH, Newton Y, Jain M, Altemose N, Willard HF, Kent WJ.\ \ Centromere reference models for human chromosomes X and Y satellite arrays.\ Genome Res. 2014 Apr;24(4):697-707.\ PMID: 24501022; PMC: PMC3975068\

    \ map 1 chromosomes chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX,chrY\ color 255,0,0\ group map\ longLabel Centromere Locations\ shortLabel Centromeres\ track centromeres\ type bed 4 .\ url https://www.ncbi.nlm.nih.gov/nuccore/$$\ urlLabel NCBI accession record:\ visibility hide\ hprcChainNetViewchain Chains bed 3 Human Genomes, Chain/Net pairwise alignments, as mapped by the HPRC project 3 100 0 0 0 255 255 0 1 0 0 hprc 1 longLabel Human Genomes, Chain/Net pairwise alignments, as mapped by the HPRC project\ parent hprcChainNet\ shortLabel Chains\ spectrum on\ track hprcChainNetViewchain\ view chain\ visibility pack\ chm13LiftOver CHM13 alignments bigChain GCA_009914755.4 CHM13 (GCA_009914755.4) v1_nfLO liftOver alignments 0 100 120 20 0 187 137 127 0 0 0

    Description

    \

    \ These tracks show the one-to-one v1_nfLO alignments of the GRCh38/hg38 to the\ T2T-CHM13 v2.0 assembly.\

    \ \

    Display Conventions

    \

    \ The track displays boxes joined together by either single or double lines,\ with the boxes represent aligning regions, single lines indicating gaps that\ are largely due to a deletion in the CHM13 v2.0 assembly or an insertion in\ the GRCh38/hg38, and double lines representing more complex gaps that involve\ substantial sequence in both assembly.\

    \ \ \

    Methods

    \

    \

    GRCh38/hg38 pre-processing

    \

    \ To prevent ambiguous alignments, all false duplications, as determined by the Genome in a Bottle Consortium\ (GCA_000001405.15_GRCh38_GRC_exclusions_T2Tv2.bed), \ as well as the GRCh38 modeled centromeres,\ were masked from the GRCh38/hg38 primary assembly. In addition, unlocalized and unplaced (random) contigs were removed.\

    \ \

    Alignment and Chain Creation

    \

    \ For the minimap2-based pipeline, the initial chain file was generated using\ nf-LO v1.5.1 with\ minimap2 v2.24 alignments. These \ chains were then split at all locations that contained unaligned segments greater than 1kbp or \ gaps greater than 10kbp. Split chain files were then converted to PAF format\ with extended CIGAR strings using chaintools (v0.1),\ and alignments between nonhomologous chromosomes were removed. The trim-paf operation of\ rustybam (v0.1.29) \ was next used to remove overlapping alignments \ in the query sequence, and then the target sequence, to create 1:1 alignments. PAF alignments \ were converted back to the chain format with paf2chain commit f68eeca, and finally, \ chaintools was used to generate the inverted chain file.\

    \ \

    \ Full commands with parameters used were:\

    \ 
    \
    nextflow run main.nf --source GRCh38.fa --target chm13v2.0.fasta --outdir dir -profile local --aligner minimap2\
    python chaintools/src/split.py -c input.chain -o input-split.chain\
    python chaintools/src/to_paf.py -c input-split.chain -t target.fa -q query.fa -o input-split.paf\
    awk '$1==$6' input-split.paf | rb break-paf --max-size 10000  | rb trim-paf -r | rb invert | rb trim-paf -r | rb invert > out.paf\
    paf2chain -i out.paf > out.chain\
    python chaintools/src/invert.py -c out.chain -o out_inverted.chain\
    \ \

    \ The above process does not add chain ids or scores. The UCSC utilities\ chainMergeSort and chainScore are used to update the\ chains:\ \ 

    \
    chainMergeSort out.chain | chainScore stdin chm13v2.0.2bit hg38.2bit chm13v2.0-hg38.chain\
    chainMergeSort out_inverted.chain | chainScore stdin hg38.2bit chm13v2.0.2bit hg38-chm13v2.0.chain\
    \

    \ \

    \ Rustybam trim-paf\ uses dynamic programming and the CIGAR string to find an optimal\ splitting point between overlapping alignments in the query sequence. It\ starts its trimming with the largest overlap and then recursively trims\ smaller overlaps.\

    \ \

    \ Results were validated by using chaintools to confirm that there were no\ overlapping sequences with respect to both CHM13v2.0 and GRCh38 in the\ released chain file. In addition, trimmed alignments were visually inspected\ with SafFire to confirm their quality.\

    \ \

    \ Chains were swapped to make GRCh38/hg38 the target.\

    \

    \ \

    Credits

    \

    \ The v1_nflo chains were generated by Nae-Chyun Chen<naechyun.chen@gmail.com>\ and Mitchell Vollger<mvollger@uw.edu>\

    \ \

    References

    \

    \

    Nurk S, Koren S, Rhie A, Rautiainen M, et al. The complete sequence of a human genome. bioRxiv, 2021.

    \

    \ compGeno 1 bigDataUrl /gbdb/hg38/bbi/chm13LiftOver/hg38-chm13v2.ncbi-qnames.over.chain.bb\ color 120,20,0\ group compGeno\ linkDataUrl /gbdb/hg38/bbi/chm13LiftOver/hg38-chm13v2.ncbi-qnames.over.link.bb\ longLabel CHM13 (GCA_009914755.4) v1_nfLO liftOver alignments\ shortLabel CHM13 alignments\ track chm13LiftOver\ type bigChain GCA_009914755.4\ visibility hide\ cytoBand Chromosome Band bed 4 + Chromosome Bands Localized by FISH Mapping Clones 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The chromosome band track represents the approximate \ location of bands seen on Giemsa-stained chromosomes.\ Chromosomes are displayed in the browser with the short arm first. \ Cytologically identified bands on the chromosome are numbered outward \ from the centromere on the short (p) and long (q) arms. At low resolution, \ bands are classified using the nomenclature \ [chromosome][arm][band], where band is a \ single digit. Examples of bands on chromosome 3 include 3p2, 3p1, cen, 3q1, \ and 3q2. At a finer resolution, some of the bands are subdivided into \ sub-bands, adding a second digit to the band number, e.g. 3p26. This \ resolution produces about 500 bands. A final subdivision into a \ total of 862 sub-bands is made by adding a period and another digit to the \ band, resulting in 3p26.3, 3p26.2, etc.

    \ \

    Methods

    \

    \ Chromosome band information was downloaded from NCBI\ using the ideogram.gz file for the respective assembly. These data were then \ transformed into our visualization format. See our \ assembly creation documentation for the organism of interest\ to see the specific steps taken to transform these data.\ Band lengths are typically estimated based on FISH or other\ molecular markers interpreted via microscopy.

    \

    \ For some of our older assemblies, greater than 10 years old, the tracks were\ created as detailed below and in Furey and Haussler, 2003.

    \

    \ Barbara Trask, Vivian Cheung, Norma Nowak and others in the BAC Resource\ Consortium used fluorescent in-situ hybridization (FISH) to determine a \ cytogenetic location for large genomic clones on the chromosomes.\ The results from these experiments are the primary source of information used\ in estimating the chromosome band locations.\ For more information about the process, see the paper, Cheung,\ et al., 2001. and the accompanying web site,\ Human BAC Resource.

    \

    \ BAC clone placements in the human sequence are determined at UCSC using a \ combination of full BAC clone sequence, BAC end sequence, and STS marker \ information.

    \ \

    Credits

    \

    \ We would like to thank all the labs that have contributed to this resource:\

    \ \

    References

    \

    \ Cheung VG, Nowak N, Jang W, Kirsch IR, Zhao S, Chen XN, Furey TS, Kim UJ, Kuo WL, Olivier M et\ al.\ \ Integration of cytogenetic landmarks into the draft sequence of the human genome.\ Nature. 2001 Feb 15;409(6822):953-8.\ PMID: 11237021\

    \ \

    \ Furey TS, Haussler D.\ \ Integration of the cytogenetic map with the draft human genome sequence.\ Hum Mol Genet. 2003 May 1;12(9):1037-44.\ PMID: 12700172\

    \ \ map 1 group map\ longLabel Chromosome Bands Localized by FISH Mapping Clones\ shortLabel Chromosome Band\ track cytoBand\ type bed 4 +\ visibility hide\ cytoBandIdeo Chromosome Band (Ideogram) bed 4 + Chromosome Bands Localized by FISH Mapping Clones (for Ideogram) 1 100 0 0 0 127 127 127 0 0 0 map 1 group map\ longLabel Chromosome Bands Localized by FISH Mapping Clones (for Ideogram)\ shortLabel Chromosome Band (Ideogram)\ track cytoBandIdeo\ type bed 4 +\ visibility dense\ clinGenComp ClinGen bigBed 9 + ClinGen curation activities (Dosage Sensitivity and Gene-Disease Validity) 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ \

    \

    NOTE:
    \ These data are for research purposes only. While the ClinGen data are \ open to the public, users seeking information about a personal medical or \ genetic condition are urged to consult with a qualified physician for \ diagnosis and for answers to personal medical questions.\

    \

    \ UCSC presents these data for use by qualified professionals, and even \ such professionals should use caution in interpreting the significance of \ information found here. No single data point should be taken at face \ value and such data should always be used in conjunction with as much \ corroborating data as possible. No treatment protocols should be \ developed or patient advice given on the basis of these data without \ careful consideration of all possible sources of information.\

    \

    \ No attempt to identify individual patients should \ be undertaken. No one is authorized to attempt to identify patients \ by any means.\

    \     \
    \ \

    \ The Clinical Genome Resource (ClinGen)\ tracks display data generated from several key curation activities related to gene-disease validity,\ dosage sensitivity, and variant pathogenicity.\ ClinGen is a National Institute of Health (NIH)-funded initiative dedicated to \ identifying clinically relevant genes and variants for use in precision medicine and research. \ This is accomplished by harnessing the data from both research efforts and clinical genetic \ testing and using it to propel expert and machine-driven curation activities. \ ClinGen works closely with the National Center for Biotechnology Information (NCBI) of the \ National Library of Medicine (NLM)\ which distributes part of this information through its ClinVar database.\

    \ \

    \ The available data tracks are:\

      \
    • ClinGen Dosage Sensitivity Map -Haploinsufficiency (ClinGen \ Haploinsufficiency) and -Triplosensitivity (ClinGen Triplosensitivity) -\ Shows evidence supporting or refuting haploinsufficiency (loss) and triplosensitivity (gain) as \ mechanisms for disease at gene-level and larger genomic regions.\
      • \
    • ClinGen Gene-Disease Validity Classification (ClinGen Validity) -\ Provides a semi-qualitative measurement for the strength of evidence of a gene-disease relationship. \
      • \
    \

    \

    \ A rating system is used to classify the evidence supporting or refuting dosage\ sensitivity for individual genes and regions, which takes in consideration the following criteria:\ number of causative variants reported, patterns of inheritance, consistency of phenotype, evidence\ from large-scale case-control studies, mutational mechanisms, data from public genome variation \ databases, and expert consensus opinion.\

    \

    \ The system is intended to be of a "dynamic nature", with regions being reevaluated periodically to \ incorporate emerging evidence. The evidence collected is displayed within a publicly available \ database. \ Evidence that haploinsufficiency or triplosensitivity of a gene is associated with a specific \ phenotype will aid in the interpretive assessment of CNVs including that gene or genomic region.\

    \

    \ Similarly, a qualitative classification system is used to correlate the evidence of \ a gene-disease relationship: "Definitive", "Strong", "Moderate", \ "Limited", "Animal Model Only", \ "No Known Disease Relationship", "Disputed", or "Refuted".\

    \ \

    Display Conventions

    \

    Haploinsufficiency/Triplosensitivity tracks

    \

    \ Items are shaded according to dosage sensitivity type, red \ for haploinsufficiency score 3, blue for triplosensitivity score 3, \ and grey for other evidence scores or \ not yet evaluated).\ Mouseover on items shows the supporting evidence of dosage sensitivity.\ Tracks can be filtered according to the supporting evidence of dosage sensitivity.\ \

    \ Dosage Scores are used to classify the evidence of the supporting dosage sensitivity map:\

    \
    0 - no evidence available
    \
    1 - little evidence for dosage pathogenicity
    \
    2 - some evidence for dosage pathogenicity
    \
    3 - sufficient evidence for dosage pathogenicity
    \
    30 - gene associated with autosomal recessive phenotype
    \
    40 - dosage sensitivity unlikely
    \
    \

    \ \

    \ For more information on the use of the scores see the ClinGen\ FAQs.\

    \ \

    Gene-Disease Validity track

    \ \

    \ The gene-disease validity classifications are labeled with the disease entity and hovering \ over the features shows the associated gene. Items are color coded based on the strength of their \ classification as provided below:\

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorClassifications
    Definitive: The role of this gene in this particular disease has been \ repeatedly demonstrated and has been upheld over time
    Strong: The role of this gene in disease has been independently\ demonstrated typically in at least two separate studies, including both strong variant-level\ evidence in unrelated probands and compelling gene-level evidence from experimental data
    Moderate: There is moderate evidence to support a causal role for this\ gene in this disease, typically including both several probands with variants and moderate \ experimental data supporting the gene-disease assertion
    Limited: There is limited evidence to support a causal role for this \ gene in this disease, such as few probands with variants and limited experimental data supporting \ the gene-disease assertion
    Animal Model Only: There are no published human probands with variants \ but there is animal model data supporting the gene-disease assertion
    No Known Disease Relationship: Evidence for a causal role in disease \ has not been reported
    Disputed: Conflicting evidence disputing a role for this gene in this \ disease has arisen since the initial report identifying an association between the gene and disease
    Refuted: Evidence refuting the role of the gene in the specified \ disease has been reported and significantly outweighs any evidence supporting the role
    \ \

    \ The version of the ClinGen Standard Operating Procedures (SOPs) that each gene-disease \ classification was performed with is provided as well. An older or newer SOP version does not \ necessarily mean the classification is any more or less valid but is provided for clarity. \ Each details page also contains a direct link to an evidence summary detailing the rationale behind\ the specific classification and information such as a breakdown of the semi-qualitative framework, \ relevant PubMed IDs, the type of data (Genetic vs Experimental Evidence), and a detailed summary.\

    \ \

    \ These tracks are multi-view composite tracks that contain multiple data types (views). Each view \ within a track has separate display controls, as described \ here.\

    \ \

    Data Updates

    \ Our programs check every day if ClinGen has an updated data file, and if so, update the track with the latest file.\ Click the "Data Format" on this track documentation page to see when the track was last updated.\ \

    Data Access

    \

    \ The raw data can be explored interactively with the Table Browser,\ or the Data Integrator. For automated analysis, the data may \ be queried from our REST API. Please refer to our \ mailing list archives\ for questions, or our Data Access FAQ for more\ information.\

    \ \

    \ Data is also freely available on the ClinGen website \ (gene-disease curation methods) \ and FTP (dosage curations). \

    \ \ \

    Credits

    \

    \ Thank you to ClinGen and NCBI, especially Erin Rooney Riggs, Christa Lese Martin, Tristan Nelson,\ May Flowers, Scott Goehringer, and Phillip Weller for technical coordination and \ consultation, and to Christopher Lee, Luis Nassar, and Anna Benet-Pages of the Genome \ Browser team.\

    \ \

    References

    \ \

    \ Rehm HL, Berg JS, Brooks LD, Bustamante CD, Evans JP, Landrum MJ, Ledbetter DH, Maglott DR, Martin\ CL, Nussbaum RL et al.\ \ ClinGen--the Clinical Genome Resource.\ N Engl J Med. 2015 Jun 4;372(23):2235-42.\ PMID: 26014595; PMC: PMC4474187\

    \ \

    \ Riggs ER, Church DM, Hanson K, Horner VL, Kaminsky EB, Kuhn RM, Wain KE, Williams ES, Aradhya S,\ Kearney HM et al.\ \ Towards an evidence-based process for the clinical interpretation of copy number variation.\ Clin Genet. 2012 May;81(5):403-12.\ PMID: 22097934; PMC: PMC5008023\

    \ \

    \ Strande NT, Riggs ER, Buchanan AH, Ceyhan-Birsoy O, DiStefano M, Dwight SS, Goldstein J, Ghosh R,\ Seifert BA, Sneddon TP et al.\ \ Evaluating the Clinical Validity of Gene-Disease Associations: An Evidence-Based Framework Developed\ by the Clinical Genome Resource.\ Am J Hum Genet. 2017 Jun 1;100(6):895-906.\ PMID: 28552198; PMC: PMC5473734\

    \ \ phenDis 1 compositeTrack on\ group phenDis\ html clinGen\ itemRgb on\ longLabel ClinGen curation activities (Dosage Sensitivity and Gene-Disease Validity)\ noParentConfig on\ shortLabel ClinGen\ track clinGenComp\ type bigBed 9 +\ visibility hide\ iscaComposite ClinGen CNVs bed 3 Clinical Genome Resource (ClinGen) CNVs 0 100 0 0 0 127 127 127 0 0 0

    \
    \

    The ClinGen CNVs track is no longer being updated. These data, along with updates,\ can be found in the \ ClinVar Copy Number Variants (ClinVar CNVs) track.

    \

    \ See our \ news archive for more information.

    \

    \ \

    Description

    \

    \

    \

    NOTE:
    \ These data are for research purposes only. While the ClinGen data are\ open to the public, users seeking information about a personal medical or\ genetic condition are urged to consult with a qualified physician for\ diagnosis and for answers to personal medical questions.\

    \ \

    UCSC presents these data for use by qualified professionals, and even\ such professionals should use caution in interpreting the significance of \ information found here. No single data point should be taken at face \ value and such data should always be used in conjunction with as much \ corroborating data as possible. No treatment protocols should be \ developed or patient advice given on the basis of these data without \ careful consideration of all possible sources of information.\

    \ \

    No attempt to identify individual patients should\ be undertaken. No one is authorized to attempt to identify patients \ by any means.\

    \     \
    \ \

    \ \

    \ The Clinical Genome Resource (ClinGen)\ is a National Institutes of Health (NIH)-funded program dedicated to building a genomic\ knowledge base to improve patient care. \ This will be accomplished by harnessing the data from both research efforts and clinical genetic\ testing, and using it to propel expert and machine-driven curation activities. \ By facilitating collaboration within the genomics community,\ we will all better understand the relationship between genomic variation and human health. \ ClinGen will work closely with the National\ Center for Biotechnology Information (NCBI) of the National Library of Medicine (NLM), \ which will distribute this information through its\ ClinVar database.\

    \ \

    \ The ClinGen dataset displays clinical microarray data submitted to dbGaP/dbVar at NCBI\ by ClinGen member laboratories (dbVar study\ nstd37),\ as well as clinical data reported in Kaminsky et al., 2011 (dbVar study\ ntsd101)\ (see reference below). This track shows copy number variants (CNVs) found in patients referred\ for genetic testing for indications such as intellectual disability, developmental delay,\ autism and congenital anomalies. Additionally, the ClinGen "Curated Pathogenic" and\ "Curated Benign" tracks represent genes/genomic regions reviewed for dosage sensitivity\ in an evidence-based manner by the ClinGen Structural Variation Working Group (dbVar study\ nstd45).\

    \ \

    The CNVs in this study have been reviewed for their clinical significance by\ the submitting ClinGen laboratory. Some of the deletions and duplications in the track\ have been reported as causative for a phenotype by the submitting clinical \ laboratory; this information was based on current knowledge at the time of submission.\ However, it should be noted that phenotype information is often vague and imprecise and\ should be used with caution. While all samples were submitted because of a phenotype in \ a patient, only 15% of patients had variants determined to be causal, \ and most patients will have additional variants that are not causal.\

    \ \

    CNVs are separated into subtracks and are labeled as:\

      \
    • Pathogenic
      • \
    • Uncertain: Likely Pathogenic
      • \
    • Uncertain
      • \
    • Uncertain: Likely Benign
      • \
    • Benign
      • \
    \ The user should be aware that some of the data were submitted using a 3-class\ system, with the two "Likely" categories omitted. \

    \ \

    Two subtracks, "Path Gain" and "Path Loss", are aggregate tracks\ showing graphically the accumulated level of gains and losses in the \ Pathogenic subtrack across the genome. Similarly, "Benign Gain" and\ "Benign Loss" show the accumulated level of gains and losses in the\ Benign subtrack. These tracks are collectively called "Coverage"\ tracks.\

    \ \

    Many samples have multiple variants, not all of which are causative \ of the phenotype. The CNVs in these samples have been decoupled, so it is not\ possible to connect multiple imbalances as coming from a single patient.\ It is therefore not possible to identify individuals via their genotype. \

    \ \ \

    Methods and Color Convention

    \

    \ The samples were analyzed by arrays from patients referred for \ cytogenetic testing due to clinical phenotypes. Samples were analyzed with a \ probe spacing of 20-75 kb. The minimum CNV breakpoints are shown; if available,\ the maximum CNV breakpoints are provided in the details page, but are not shown \ graphically on the Browser image.\

    \ \

    Data were submitted to \ dbGaP at NCBI and thence decoupled as described into\ dbVar for unrestricted release.\

    \ \

    \ The entries are colored red for loss and \ blue for gain. The names of items use the \ ClinVar convention of appending "_inheritance" indicating the mechanism of \ inheritance, if known: "_pat, _mat, _dnovo, _unk" as paternal, maternal, \ de novo and unknown, respectively. \

    \ \

    Verification

    \

    \ Most data were validated by the submitting laboratory using various methods, \ including FISH, G-banded karyotype, MLPA and qPCR.\

    \ \

    Credits

    \

    \ Thank you to ClinGen and NCBI for technical coordination and consultation, and to\ the UCSC Genome Browser staff for engineering the track display.\

    \ \

    References

    \

    \ Miller DT, Adam MP, Aradhya S, Biesecker LG, Brothman AR, Carter NP, Church DM, Crolla JA, Eichler\ EE, Epstein CJ et al.\ \ Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals\ with developmental disabilities or congenital anomalies.\ Am J Hum Genet. 2010 May 14;86(5):749-64.\ PMID: 20466091; PMC: PMC2869000\

    \ \

    \ Kaminsky EB, Kaul V, Paschall J, Church DM, Bunke B, Kunig D, Moreno-De-Luca D, Moreno-De-Luca A,\ Mulle JG, Warren ST et al.\ \ An evidence-based approach to establish the functional and clinical significance of copy number\ variants in intellectual and developmental disabilities.\ Genet Med. 2011 Sep;13(9):777-84.\ PMID: 21844811; PMC: PMC3661946\

    \ phenDis 1 compositeTrack on\ dimensions dimensionY=class dimensionX=level\ group phenDis\ longLabel Clinical Genome Resource (ClinGen) CNVs\ pennantIcon snowflake.png /goldenPath/newsarch.html#093020b "ClinGen CNV data are now updated on ClinVar Variants track. See news archive for details."\ shortLabel ClinGen CNVs\ sortOrder class=+ level=+ view=+\ subGroup1 view Views cov=Coverage cnv=CNVs dose=Dose\ subGroup2 class Class path=Pathogenic likP=Likely_Pathogenic unc=Uncertain likB=Likely_Benign ben=Benign\ subGroup3 level Evidence cur=Curated sub=Submitted\ track iscaComposite\ type bed 3\ visibility hide\ clinvarSubLolly ClinVar interp bigLolly ClinVar SNVs submitted interpretations and evidence 0 100 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg38/clinvarSubLolly/clinvarSubLolly.bb\ configurable off\ group phenDis\ lollyMaxSize 10\ lollyNoStems on\ lollySizeField 10\ longLabel ClinVar SNVs submitted interpretations and evidence\ mouseOverField _mouseOver\ parent clinvar\ shortLabel ClinVar interp\ skipFields reviewStatus\ track clinvarSubLolly\ type bigLolly\ urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/snp/$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"\ viewLimits 0:5\ xrefDataUrl /gbdb/hg38/clinvarSubLolly/clinvarSub.bb\ yAxisLabel.0 0 on 150,150,150 OTH\ yAxisLabel.1 1 on 150,150,150 B\ yAxisLabel.2 2 on 150,150,150 LB\ yAxisLabel.3 3 on 150,150,150 VUS\ yAxisLabel.4 4 on 150,150,150 LP\ yAxisLabel.5 5 on 150,150,150 P\ yAxisNumLabels off\ clinvar ClinVar Variants bed 12 + ClinVar Variants 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \
    \

    NOTE:
    \ ClinVar is intended for use primarily by physicians and other\ professionals concerned with genetic disorders, by genetics researchers, and\ by advanced students in science and medicine. While the ClinVar database is\ open to all academic users, users seeking information about a personal medical\ or genetic condition are urged to consult with a qualified physician for\ diagnosis and for answers to personal questions.

    \
    \ \

    \ These tracks show the genomic positions of variants in the\ ClinVar database. \ ClinVar is a free, public archive of reports\ of the relationships among human variations and phenotypes, with supporting\ evidence.

    \ \

    \ The ClinVar SNVs track displays substitutions and indels shorter than 50 bp and \ the ClinVar CNVs track displays copy number variants (CNVs) equal or larger than 50 bp.\ Until October 2017, all variants with the ClinVar types \ copy number gain/loss and DbVar "nsv" accessions were assigned in the CNV \ category. Because the ClinVar type no longer captures this information, any variation equal to or \ larger than 50 bp is now considered a CNV.\

    \ \

    \ The ClinVar Interpretations track displays the genomic positions of individual variant \ submissions and interpretations of the clinical significance and their relationship to disease in \ the ClinVar database.\

    \ \

    \ Note: The data in the track are obtained directly from ClinVar's FTP site.\ We display the data obtained from ClinVar as-is to avoid discrepancies between UCSC and NCBI. \ However, be aware that the ClinVar conventions are different from the VCF standard. \ Variants may be right-aligned or may contain additional context, e.g. for\ inserts. ExAC/gnomAD make available a converter\ to make ClinVar more comparable to VCF files.

    \ \

    Display Conventions and Configuration

    \ \

    \ Items can be filtered according to the size of the variant, variant type, clinical significance,\ allele origin, and molecular consequence, using the track Configure options.\ Each subtrack has separate display controls, as described\ here.\

    \ \

    \ Mouseover on the genomic locations of ClinVar variants shows variant details, clinical \ interpretation, and associated conditions. Further information on each variant is displayed on \ the details page by a click onto any variant. ClinVar is an archive for assertions of clinical \ significance made by the submitters. The level of review supporting the assertion of clinical \ significance for the variation is reported as the \ review status. \ Stars (0 to 4) provide a graphical representation of the aggregate review status. \

    \ \

    \ Entries in the ClinVar CNVs track are colored by type of variant, among others:\

      \
    • red for loss
      • \
    • blue for gain
      • \
    • purple for inversion
      • \
    • orange for insertion
      • \
    \ A light-to-dark color gradient indicates the clinical significance of each variant, with the \ lightest shade being benign, to the darkest shade being pathogenic. Detailed information on the \ CNV color code is described \ here. \

    \ \

    \ Entries in the ClinVar SNVs and ClinVar Interpretations tracks are colored by clinical \ significance:\

      \
    • red for pathogenic
      • \
    • dark blue for variant of uncertain significance
      • \
    • green for benign
      • \
    • dark grey for not provided
      • \
    • light blue for conflicting
      • \
    \

    \ \

    \ The variants in the ClinVar Interpretations track are sorted by the variant \ classification of each submission:\

      \
    • P: Pathogenic
      • \
    • LP: Likely Pathogenic
      • \
    • VUS: Variant of Unknown Significance
      • \
    • LB: Likely Benign
      • \
    • B: Benign
      • \
    • OTH: Others
      • \
    \ The size of the bead represents \ the number of submissions at that genomic position. For track display clarity, these submission\ numbers are binned into three categories:\
      \
    • Small-sized beads: 1-2 submissions
      • \
    • Medium-sized beads: 3-7 submissions
      • \
    • Large-sized beads: 8 or more submissions
      • \
    \ Hovering on the track items shows the genomic variations which start at that position \ and the number of individual submissions with that classification. The details page lists all\ rated submissions from ClinVar, with specific details to the interpretation of the clinical or \ functional significance of each variant in relation to a condition. Interpretation is at \ variant-level, not at case (or patient-specific) level.\

    \ \

    \ More information about using and understanding the ClinVar data can be found \ here.\

    \ \

    \ For the human genome version hg19: the hg19 genome released by UCSC in 2009 had a \ mitochondrial genome "chrM" that was not the same as the one later used for most\ databases like ClinVar. As a result, we added the official mitochondrial genome\ in 2020 as "chrMT" and all mitochondrial annotations of ClinVar and most other\ databases are shown on the mitochondrial genome called "chrMT". For full description\ of the issue of the mitochondrial genome in hg19, please see the \ README file \ on our download site. \

    \ \ \

    Data updates

    \

    ClinVar publishes a new release on the \ first Thursday every month. \ This track is then updated automatically at most six days \ later. The exact date of our last update is shown when you click onto any variant. \ You can find the previous versions of the track organized by month on our\ downloads server in the \ archive\ directory. To display one of these previous versions, paste the URL to one of\ the older files into the custom track text input field under "My Data > Custom Tracks".

    \ \

    Data access

    \

    \ The raw data can be explored interactively with the Table Browser\ or the Data Integrator. The data can be\ accessed from scripts through our API, the track names are\ "clinVarMain and "clinVarCnv".\ \

    \ For automated download and analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from\ our download server.\ The files for this track are called clinVarMain.bb and clinVarCnv.bb. Individual\ regions or the whole genome annotation can be obtained using our tool bigBedToBed\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool\ can also be used to obtain only features within a given range, e.g. \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/bbi/clinvar/clinvarMain.bb -chrom=chr21 -start=0 -end=100000000 stdout

    \

    \ \

    Methods

    \ \

    \ ClinVar files were reformatted at UCSC to the bigBed format.\ The data is updated every month, one week after the ClinVar release date.\ The program that performs the update is available on\ Github.\

    \ \

    Credits

    \

    \ Thanks to NCBI for making the ClinVar data available on their FTP site as a tab-separated file.\

    \ \

    References

    \

    \ Landrum MJ, Lee JM, Benson M, Brown G, Chao C, Chitipiralla S, Gu B, Hart J, Hoffman D, Hoover J\ et al.\ \ ClinVar: public archive of interpretations of clinically relevant variants.\ Nucleic Acids Res. 2016 Jan 4;44(D1):D862-8.\ PMID: 26582918; PMC: PMC4702865\

    \ \

    \ Azzariti DR, Riggs ER, Niehaus A, Rodriguez LL, Ramos EM, Kattman B, Landrum MJ, Martin CL, Rehm HL.\ \ Points to consider for sharing variant-level information from clinical genetic testing with\ ClinVar.\ Cold Spring Harb Mol Case Stud. 2018 Feb;4(1).\ PMID: 29437798; PMC: PMC5793773\

    \ \ phenDis 1 compositeTrack on\ dataVersion /gbdb/$D/bbi/clinvarAlpha/version.txt\ group phenDis\ itemRgb on\ longLabel ClinVar Variants\ noParentConfig on\ scoreLabel ClinVar Star-Rating (0-4)\ shortLabel ClinVar Variants\ track clinvar\ type bed 12 +\ urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/snp/$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"\ visibility hide\ cloneEndSuper Clone Ends bed 3 Mapping of clone libraries end placements 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track shows the NCBI clone end mappings from the\ NCBI Clone DB database. Libraries with more than\ 30,000 clones are included in this track display.

    \

    \ Bacterial artificial chromosomes (BACs) are a key part of many\ large-scale sequencing projects. A BAC typically consists of 50 - 300 kb of\ DNA. During the early phase of a sequencing project, it is common\ to sequence a single read (approximately 500 bases) off each end of\ a large number of BACs. Later on in the project, these BAC end reads\ can be mapped to the genome sequence.

    \

    \ These BAC end pairs can be useful for validating the assembly over\ relatively long ranges. In some cases, the BACs are useful biological\ reagents. This track can also be used for determining which BAC\ contains a given gene, useful information for certain wet lab experiments.

    \

    \ The scoring scheme used for this annotation assigns 1000 to an alignment\ when the BAC end pair aligns to only one location in the genome (after\ filtering). When a BAC end pair or clone aligns to multiple locations, the\ score is calculated as 1500/(number of alignments).

    \ \

    Display Conventions and Configuration

    \ \

    \ Items in this track are colored according to their strand orientation. Blue indicates alignment to the forward strand, \ and green indicates alignment to the negative strand.\

    \ \ \

    Methods

    \

    \ The mappings of these BAC end sequences are taken directly from the\ NCBI Clone DB FTP site\ ftp.ncbi.nih.gov/repository/clone/reports/Homo_sapiens/\ *.GCF_000001405.26.106.*.gff files.

    \

    \ UCSC filtered the NCBI Clone DB mapped ends to drop ends that mapped to a\ region that was three times longer than the median size of the clones in\ the library. Only libraries with more than\ 30,000 clones are included in this track display.

    \

    \ Click through on displayed items to the Clone DB database information,\ including\ Clone DB distributor references.

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    clone information from NCBI Clone DB and UCSC mapping statisticslibrary
    name    		total
    clones    		total end
    sequences    		NCBI mapped
    ends    		UCSC filtered
    ends    		UCSC
    dropped    		per-cent
    dropped
    ABC82,007,0473,888,4761,205,4661,192,78412,682% 1.05
    WI21,122,5642,298,885589,547582,8436,704% 1.14
    ABC121,120,9392,169,280778,216771,8276,3890.82
    ABC71,116,9662,152,975650,329644,0716,2580.96
    ABC91,065,5032,084,892757,644750,6486,9960.92
    ABC101,062,0822,121,489788,344781,3317,0130.89
    ABC141,042,9292,089,193846,055839,1266,9290.82
    ABC131,009,6432,057,345811,829803,5898,2401.01
    ABC11998,8801,966,644730,565724,8645,7010.78
    ABC23942,1331,535,766437,098433,8963,2020.73
    ABC16907,9481,534,288452,316449,1013,2150.71
    ABC24835,6001,383,475399,056395,7763,2800.82
    ABC27768,3361,229,804334,232331,8222,4100.72
    ABC18743,6401,204,811325,150322,9042,2460.69
    COR2A723,5691,441,881583,327578,5784,7490.81
    ABC22519,274780,151189,988188,7431,2450.66
    ABC21436,930680,160182,214180,9731,2410.68
    RP11292,975394,81386,87585,9039721.12
    COR02272,396546,984208,377206,7821,5950.77
    CTD226,848403,68896,59494,9411,6531.71
    CH17176,209325,659105,805105,0607450.70
    ABC2049,13280,35024,72024,4742461.00
    UCSC
    dropped    		152,979n/an/an/an/an/a
    multiple
    mappings    		775,629n/an/an/an/an/a
    \

    \ \

    Credits

    \

    \ Additional information about the clone, including how it\ can be obtained, may be found at the\ NCBI Clone Registry. To view the registry entry for a\ specific clone, open the details page for the clone and click on its name at\ the top of the page.

    \ map 1 compositeTrack on\ dimensions dimensionX=source\ dragAndDrop on\ group map\ longLabel Mapping of clone libraries end placements\ noInherit on\ shortLabel Clone Ends\ sortOrder source=+\ subGroup1 source Source agencourt=Agencourt chori=Chori corielle=Coriell caltech=CalTech rpci=RPCI wibr=WIBR placements=Placements\ track cloneEndSuper\ type bed 3\ visibility hide\ ghClusteredInteraction Clustered Interactions bigInteract GeneHancer Regulatory Elements and Gene Interactions 3 100 0 0 0 127 127 127 0 0 0 https://www.genecards.org/cgi-bin/carddisp.pl?gene=$&keywords=$&prefilter=enhancers#enhancers regulation 1 interactDirectional clusterTarget\ interactMultiRegion on\ longLabel GeneHancer Regulatory Elements and Gene Interactions\ parent geneHancer\ shortLabel Clustered Interactions\ track ghClusteredInteraction\ type bigInteract\ url https://www.genecards.org/cgi-bin/carddisp.pl?gene=$&keywords=$&prefilter=enhancers#enhancers\ urlLabel Interaction in GeneCards\ view d_I\ visibility pack\ iscaViewDetail CNVs gvf Clinical Genome Resource (ClinGen) CNVs 3 100 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/?term=$$ phenDis 1 longLabel Clinical Genome Resource (ClinGen) CNVs\ noScoreFilter .\ parent iscaComposite\ shortLabel CNVs\ track iscaViewDetail\ type gvf\ url https://www.ncbi.nlm.nih.gov/dbvar/?term=$$\ urlLabel ClinGen details:\ view cnv\ visibility pack\ colonWangCellType Colon Cells bigBarChart Colon cells binned by cell type from Wang et al 2020 3 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=human-intestine+colon&gene=$$

    Description

    \

    \ This track shows data from Single-cell transcriptome analysis reveals differential\ nutrient absorption functions in human intestine. Droplet-based\ single-cell RNA sequencing (scRNA-seq) was used to survey gene expression\ profiles of the epithelium in the human ileum, colon, and rectum. A total of 7\ cell clusters were identified: enterocytes (EC), goblet cells (G), paneth-like\ cells (PLC), enteroendocrine cells (EEC), progenitor cells (PRO),\ transient-amplifying cells (TA) and stem cells (SC).

    \ \

    \ This track collection contains two bar chart tracks of RNA expression in colon\ cells where cells are grouped by cell type \ (Colon Cells) or donor \ (Colon Donor). The default track \ displayed is Colon Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \
    ColorCell classification
    epithelial
    secretory
    stem cell
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated \ with those classes. Note that the Colon Donor track \ is colored by donor for improved clarity.

    \ \

    Method

    \

    \ Using scRNA-seq, RNA profiles of intestinal epithelial cells were obtained for \ 4,472 cells from two human colon samples. Tissue samples belonged to a male \ donor age 54 (Colon-1) and a female donor age 67 (Colon-2) both diagnosed with \ Adenocarcinoma. The healthy intestinal mucous membranes used for each sample \ were cut away from the tumor border in surgically removed ascending colon tissue. \ Additionally, the intestinal tissues were washed in Hank's balanced salt solution \ (HBSS) to remove mucus, blood cells, and muscle tissue. The sample was enriched \ for epithelial cells through centrifugation before being dissociated with Tryple \ to obtain single-cell suspensions. RNA-seq libraries were prepared using 10x \ Genomics 3' v2 kit and sequenced on an Illumina Hiseq X Ten PE150.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used \ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Yalong Wang, Wanlu Song, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Luis Nassar. The\ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG.\ \ Single-cell transcriptome analysis reveals differential nutrient absorption functions in human\ intestine.\ J Exp Med. 2020 Feb 3;217(2).\ PMID: 31753849; PMC: PMC7041720

    \ \ \ singleCell 1 barChartBars enteroendocrine_cell enterocyte goblet_cell paneth-like_cell progenitor_cell stem_cell transit-amplifying_cell\ barChartColors #c7d2e5 #0198c0 #0251fc #7197d7 #4d689b #9e9fa2 #949dae\ barChartLimit 1.6\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/colonWang/cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/colonWang/cell_type.bb\ defaultLabelFields name\ html colonWang\ labelFields name,name2\ longLabel Colon cells binned by cell type from Wang et al 2020\ parent colonWang\ shortLabel Colon Cells\ track colonWangCellType\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=human-intestine+colon&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility pack\ colonWangDonor Colon Donor bigBarChart Colon cells binned by organ donor from Wang et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=human-intestine+colon&gene=$$

    Description

    \

    \ This track shows data from Single-cell transcriptome analysis reveals differential\ nutrient absorption functions in human intestine. Droplet-based\ single-cell RNA sequencing (scRNA-seq) was used to survey gene expression\ profiles of the epithelium in the human ileum, colon, and rectum. A total of 7\ cell clusters were identified: enterocytes (EC), goblet cells (G), paneth-like\ cells (PLC), enteroendocrine cells (EEC), progenitor cells (PRO),\ transient-amplifying cells (TA) and stem cells (SC).

    \ \

    \ This track collection contains two bar chart tracks of RNA expression in colon\ cells where cells are grouped by cell type \ (Colon Cells) or donor \ (Colon Donor). The default track \ displayed is Colon Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \
    ColorCell classification
    epithelial
    secretory
    stem cell
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated \ with those classes. Note that the Colon Donor track \ is colored by donor for improved clarity.

    \ \

    Method

    \

    \ Using scRNA-seq, RNA profiles of intestinal epithelial cells were obtained for \ 4,472 cells from two human colon samples. Tissue samples belonged to a male \ donor age 54 (Colon-1) and a female donor age 67 (Colon-2) both diagnosed with \ Adenocarcinoma. The healthy intestinal mucous membranes used for each sample \ were cut away from the tumor border in surgically removed ascending colon tissue. \ Additionally, the intestinal tissues were washed in Hank's balanced salt solution \ (HBSS) to remove mucus, blood cells, and muscle tissue. The sample was enriched \ for epithelial cells through centrifugation before being dissociated with Tryple \ to obtain single-cell suspensions. RNA-seq libraries were prepared using 10x \ Genomics 3' v2 kit and sequenced on an Illumina Hiseq X Ten PE150.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used \ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Yalong Wang, Wanlu Song, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Luis Nassar. The\ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG.\ \ Single-cell transcriptome analysis reveals differential nutrient absorption functions in human\ intestine.\ J Exp Med. 2020 Feb 3;217(2).\ PMID: 31753849; PMC: PMC7041720

    \ \ \ singleCell 1 barChartCategoryUrl /gbdb/hg38/bbi/colonWang/donor.colors\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/colonWang/donor.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/colonWang/donor.bb\ defaultLabelFields name\ html colonWang\ labelFields name,name2\ longLabel Colon cells binned by organ donor from Wang et al 2020\ parent colonWang\ shortLabel Colon Donor\ track colonWangDonor\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=human-intestine+colon&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ colonWang Colon Wang Colon single cell sequencing from Wang et al 2020 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track shows data from Single-cell transcriptome analysis reveals differential\ nutrient absorption functions in human intestine. Droplet-based\ single-cell RNA sequencing (scRNA-seq) was used to survey gene expression\ profiles of the epithelium in the human ileum, colon, and rectum. A total of 7\ cell clusters were identified: enterocytes (EC), goblet cells (G), paneth-like\ cells (PLC), enteroendocrine cells (EEC), progenitor cells (PRO),\ transient-amplifying cells (TA) and stem cells (SC).

    \ \

    \ This track collection contains two bar chart tracks of RNA expression in colon\ cells where cells are grouped by cell type \ (Colon Cells) or donor \ (Colon Donor). The default track \ displayed is Colon Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \
    ColorCell classification
    epithelial
    secretory
    stem cell
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated \ with those classes. Note that the Colon Donor track \ is colored by donor for improved clarity.

    \ \

    Method

    \

    \ Using scRNA-seq, RNA profiles of intestinal epithelial cells were obtained for \ 4,472 cells from two human colon samples. Tissue samples belonged to a male \ donor age 54 (Colon-1) and a female donor age 67 (Colon-2) both diagnosed with \ Adenocarcinoma. The healthy intestinal mucous membranes used for each sample \ were cut away from the tumor border in surgically removed ascending colon tissue. \ Additionally, the intestinal tissues were washed in Hank's balanced salt solution \ (HBSS) to remove mucus, blood cells, and muscle tissue. The sample was enriched \ for epithelial cells through centrifugation before being dissociated with Tryple \ to obtain single-cell suspensions. RNA-seq libraries were prepared using 10x \ Genomics 3' v2 kit and sequenced on an Illumina Hiseq X Ten PE150.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used \ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Yalong Wang, Wanlu Song, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Luis Nassar. The\ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG.\ \ Single-cell transcriptome analysis reveals differential nutrient absorption functions in human\ intestine.\ J Exp Med. 2020 Feb 3;217(2).\ PMID: 31753849; PMC: PMC7041720

    \ \ \ singleCell 0 group singleCell\ longLabel Colon single cell sequencing from Wang et al 2020\ shortLabel Colon Wang\ superTrack on\ track colonWang\ visibility hide\ cons470wayViewelements Conserved Elements bed 4 Multiz Alignment & Conservation (470 mammals) 0 100 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Multiz Alignment & Conservation (470 mammals)\ parent cons470way\ shortLabel Conserved Elements\ track cons470wayViewelements\ view elements\ visibility hide\ constraintSuper Constraint scores bed Human constraint scores 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ The "Constraint scores" container track includes several subtracks showing the results of\ constraint prediction algorithms. These try to find regions of negative\ selection, where variations likely have functional impact. The algorithms do\ not use multi-species alignments to derive evolutionary constraint, but use\ primarily human variation, usually from variants collected by gnomAD (see the\ gnomAD V2 or V3 tracks on hg19 and hg38) or TOPMED (contained in our dbSNP\ tracks and available as a filter). One of the subtracks is based on UK Biobank\ variants, which are not available publicly, so we have no track with the raw data.\ The number of human genomes that are used as the input for these scores are\ 76k, 53k and 110k for gnomAD, TOPMED and UK Biobank, respectively.\

    \ \

    Note that another important constraint score, gnomAD\ constraint, is not part of this container track but can be found in the hg38 gnomAD\ track.\

    \ \ The algorithms included in this track are:\
      \
    1. \ JARVIS - "Junk" Annotation genome-wide Residual Variation Intolerance Score: \ JARVIS scores were created by first scanning the entire genome with a\ sliding-window approach (using a 1-nucleotide step), recording the number of\ all TOPMED variants and common variants, irrespective of their predicted effect,\ within each window, to eventually calculate a single-nucleotide resolution\ genome-wide residual variation intolerance score (gwRVIS). That score, gwRVIS\ was then combined with primary genomic sequence context, and additional genomic\ annotations with a multi-module deep learning framework to infer\ pathogenicity of noncoding regions that still remains naive to existing\ phylogenetic conservation metrics. The higher the score, the more deleterious\ the prediction. This score covers the entire genome, except the gaps.\ \
    2. \ HMC - Homologous Missense Constraint:\ Homologous Missense Constraint (HMC) is a amino acid level measure\ of genetic intolerance of missense variants within human populations.\ For all assessable amino-acid positions in Pfam domains, the number of\ missense substitutions directly observed in gnomAD (Observed) was counted\ and compared to the expected value under a neutral evolution\ model (Expected). The upper limit of a 95% confidence interval for the\ Observed/Expected ratio is defined as the HMC score. Missense variants\ disrupting the amino-acid positions with HMC<0.8 are predicted to be\ likely deleterious. This score only covers PFAM domains within coding regions.\ \
    3. \ MetaDome - Tolerance Landscape Score (hg19 only):\ MetaDome Tolerance Landscape scores are computed as a missense over synonymous \ variant count ratio, which is calculated in a sliding window (with a size of 21 \ codons/residues) to provide \ a per-position indication of regional tolerance to missense variation. The \ variant database was gnomAD and the score corrected for codon composition. Scores \ <0.7 are considered intolerant. This score covers only coding regions.\ \
    4. \ MTR - Missense Tolerance Ratio (hg19 only):\ Missense Tolerance Ratio (MTR) scores aim to quantify the amount of purifying \ selection acting specifically on missense variants in a given window of \ protein-coding sequence. It is estimated across sliding windows of 31 codons \ (default) and uses observed standing variation data from the WES component of \ gnomAD / the Exome Aggregation Consortium Database (ExAC), version 2.0. Scores\ were computed using Ensembl v95 release. The number of gnomAD 2 exomes used here\ is higher than the number of gnomAD 3 samples (125 exoms versus 76k full genomes), \ but this score only covers coding regions.\ \
    5. \ UK Biobank depletion rank score (hg38 only):\ Halldorsson et al. tabulated the number of UK Biobank variants in each\ 500bp window of the genome and compared this number to an expected number\ given the heptamer nucleotide composition of the window and the fraction of\ heptamers with a sequence variant across the genome and their mutational\ classes. A variant depletion score was computed for every overlapping set\ of 500-bp windows in the genome with a 50-bp step size. They then assigned\ a rank (depletion rank (DR)) from 0 (most depletion) to 100 (least\ depletion) for each 500-bp window. Since the windows are overlapping, we\ plot the value only in the central 50bp of the 500bp window, following\ advice from the author of the score,\ Hakon Jonsson, deCODE Genetics. He suggested that the value of the central\ window, rather than the worst possible score of all overlapping windows, is\ the most informative for a position. This score covers almost the entire genome,\ only very few regions were excluded, where the genome sequence had too many gap characters.
    \ \

    Display Conventions and Configuration

    \ \

    JARVIS

    \

    \ JARVIS scores are shown as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The scores were downloaded and converted to a single bigWig file.\ Move the mouse over the bars to display the exact values. A horizontal line is shown at the 0.733\ value which signifies the 90th percentile.

    \ See hg19 makeDoc and\ hg38 makeDoc.

    \

    \ Interpretation: The authors offer a suggested guideline of > 0.9998 for identifying\ higher confidence calls and minimizing false positives. In addition to that strict threshold, the \ following two more relaxed cutoffs can be used to explore additional hits. Note that these\ thresholds are offered as guidelines and are not necessarily representative of pathogenicity.

    \ \

    \ \ \ \ \ \ \ \ \ \
    PercentileJARVIS score threshold
    99th0.9998
    95th0.9826
    90th0.7338
    \

    \ \

    HMC

    \

    \ HMC scores are displayed as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The highly-constrained cutoff\ of 0.8 is indicated with a line.

    \

    \ Interpretation: \ A protein residue with HMC score <1 indicates that missense variants affecting\ the homologous residues are significantly under negative selection (P-value <\ 0.05) and likely to be deleterious. A more stringent score threshold of HMC<0.8\ is recommended to prioritize predicted disease-associated variants.\

    \ \

    MetaDome

    \

    \ MetaDome data can be found on two tracks, MetaDome and MetaDome All Data.\ The MetaDome track should be used by default for data exploration. In this track\ the raw data containing the MetaDome tolerance scores were converted into a signal ("wiggle")\ track. Since this data was computed on the proteome, there was a small amount of coordinate\ overlap, roughly 0.42%. In these regions the lowest possible score was chosen for display\ in the track to maintain sensitivity. For this reason, if a protein variant is being evaluated,\ the MetaDome All Data track can be used to validate the score. More information\ on this data can be found in the MetaDome FAQ.

    \

    \ Interpretation: The authors suggest the following guidelines for evaluating\ intolerance. By default, the MetaDome track displays a horizontal line at 0.7 which \ signifies the first intolerant bin. For more information see the MetaDome publication.

    \ \

    \ \ \ \ \ \ \ \ \ \
    ClassificationMetaDome Tolerance Score
    Highly intolerant≤ 0.175
    Intolerant≤ 0.525
    Slightly intolerant≤ 0.7
    \

    \ \

    MTR

    \

    \ MTR data can be found on two tracks, MTR All data and MTR Scores. In the\ MTR Scores track the data has been converted into 4 separate signal tracks\ representing each base pair mutation, with the lowest possible score shown when\ multiple transcripts overlap at a position. Overlaps can happen since this score\ is derived from transcripts and multiple transcripts can overlap. \ A horizontal line is drawn on the 0.8 score line\ to roughly represent the 25th percentile, meaning the items below may be of particular\ interest. It is recommended that the data be explored using\ this version of the track, as it condenses the information substantially while\ retaining the magnitude of the data.

    \ \

    Any specific point mutations of interest can then be researched in the \ MTR All data track. This track contains all of the information from\ \ MTRV2 including more than 3 possible scores per base when transcripts overlap.\ A mouse-over on this track shows the ref and alt allele, as well as the MTR score\ and the MTR score percentile. Filters are available for MTR score, False Discovery Rate\ (FDR), MTR percentile, and variant consequence. By default, only items in the bottom\ 25 percentile are shown. Items in the track are colored according\ to their MTR percentile:

    \
      \
    • Green items MTR percentiles over 75\
    • Black items MTR percentiles between 25 and 75\
    • Red items MTR percentiles below 25\
    • Blue items No MTR score\
    \

    \ Interpretation: Regions with low MTR scores were seen to be enriched with\ pathogenic variants. For example, ClinVar pathogenic variants were seen to\ have an average score of 0.77 whereas ClinVar benign variants had an average score\ of 0.92. Further validation using the FATHMM cancer-associated training dataset saw\ that scores less than 0.5 contained 8.6% of the pathogenic variants while only containing\ 0.9% of neutral variants. In summary, lower scores are more likely to represent\ pathogenic variants whereas higher scores could be pathogenic, but have a higher chance\ to be a false positive. For more information see the MTR-Viewer publication.

    \ \

    Methods

    \ \

    JARVIS

    \

    \ Scores were downloaded and converted to a single bigWig file. See the\ hg19 makeDoc and the\ hg38 makeDoc for more info.\

    \ \

    HMC

    \

    \ Scores were downloaded and converted to .bedGraph files with a custom Python \ script. The bedGraph files were then converted to bigWig files, as documented in our \ makeDoc hg19 build log.

    \ \

    MetaDome

    \

    \ The authors provided a bed file containing codon coordinates along with the scores. \ This file was parsed with a python script to create the two tracks. For the first track\ the scores were aggregated for each coordinate, then the lowest score chosen for any\ overlaps and the result written out to bedGraph format. The file was then converted\ to bigWig with the bedGraphToBigWig utility. For the second track the file\ was reorganized into a bed 4+3 and conveted to bigBed with the bedToBigBed\ utility.

    \

    \ See the hg19 makeDoc for details including the build script.

    \

    \ The raw MetaDome data can also be accessed via their Zenodo handle.

    \ \

    MTR

    \

    \ V2\ file was downloaded and columns were reshuffled as well as itemRgb added for the\ MTR All data track. For the MTR Scores track the file was parsed with a python\ script to pull out the highest possible MTR score for each of the 3 possible mutations\ at each base pair and 4 tracks built out of these values representing each mutation.

    \

    \ See the hg19 makeDoc entry on MTR for more info.

    \ \

    Data Access

    \

    \ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\

    \ \

    \ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

    \ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/hmc/hmc.bw stdout\
    \

    \ \

    \ Please refer to our\ Data Access FAQ\ for more information.\

    \ \ \

    Credits

    \ \

    \ Thanks to Jean-Madeleine Desainteagathe (APHP Paris, France) for suggesting the JARVIS, MTR, HMC tracks. Thanks to Xialei Zhang for providing the HMC data file and to Dimitrios Vitsios and Slave Petrovski for helping clean up the hg38 JARVIS files for providing guidance on interpretation. Additional\ thanks to Laurens van de Wiel for providing the MetaDome data as well as guidance on the track development and interpretation. \

    \ \

    References

    \ \

    \ Vitsios D, Dhindsa RS, Middleton L, Gussow AB, Petrovski S.\ \ Prioritizing non-coding regions based on human genomic constraint and sequence context with deep\ learning.\ Nat Commun. 2021 Mar 8;12(1):1504.\ PMID: 33686085; PMC: PMC7940646\

    \ \

    \ Xiaolei Zhang, Pantazis I. Theotokis, Nicholas Li, the SHaRe Investigators, Caroline F. Wright, Kaitlin E. Samocha, Nicola Whiffin, James S. Ware\ \ Genetic constraint at single amino acid resolution improves missense variant prioritisation and gene discovery.\ Medrxiv 2022.02.16.22271023\

    \ \

    \ Wiel L, Baakman C, Gilissen D, Veltman JA, Vriend G, Gilissen C.\ \ MetaDome: Pathogenicity analysis of genetic variants through aggregation of homologous human protein\ domains.\ Hum Mutat. 2019 Aug;40(8):1030-1038.\ PMID: 31116477; PMC: PMC6772141\

    \ \

    \ Silk M, Petrovski S, Ascher DB.\ \ MTR-Viewer: identifying regions within genes under purifying selection.\ Nucleic Acids Res. 2019 Jul 2;47(W1):W121-W126.\ PMID: 31170280; PMC: PMC6602522\

    \ \

    \ Halldorsson BV, Eggertsson HP, Moore KHS, Hauswedell H, Eiriksson O, Ulfarsson MO, Palsson G,\ Hardarson MT, Oddsson A, Jensson BO et al.\ \ The sequences of 150,119 genomes in the UK Biobank.\ Nature. 2022 Jul;607(7920):732-740.\ PMID: 35859178; PMC: PMC9329122\

    \ \ phenDis 1 group phenDis\ longLabel Human constraint scores\ shortLabel Constraint scores\ superTrack on hide\ track constraintSuper\ type bed\ visibility hide\ constraintV2 Constraint V2 bigBed 12 + gnomAD Constraint Metrics V2 3 100 0 0 0 127 127 127 0 0 0 varRep 1 longLabel gnomAD Constraint Metrics V2\ parent gnomadPLI off\ shortLabel Constraint V2\ track constraintV2\ type bigBed 12 +\ view v2\ visibility pack\ constraintV4 Constraint V4 bigBed 12 + gnomAD Constraint Metrics V4 3 100 0 0 0 127 127 127 0 0 0 varRep 1 longLabel gnomAD Constraint Metrics V4\ parent gnomadPLI off\ shortLabel Constraint V4\ track constraintV4\ type bigBed 12 +\ view v4\ visibility pack\ coriellDelDup Coriell CNVs bed 9 + Coriell Cell Line Copy Number Variants 0 100 0 0 0 127 127 127 0 0 0 http://ccr.coriell.org/Sections/Search/Search.aspx?q=$$

    Description

    \

    \ The Coriell Cell Line Copy Number Variants track displays\ copy-number variants (CNVs) in chromosomal aberration and inherited disorder\ cell lines in the NIGMS Human Genetic Cell Repository. The Repository,\ sponsored by the National Institute of General Medical Sciences, provides\ scientists around the world with resources for cell and genetic research.\ The samples include highly characterized cell lines and high quality DNA.\ NIGMS Repository samples represent a variety of disease states, chromosomal\ abnormalities, apparently healthy individuals and many distinct human\ populations.\

    \ \

    \ Approximately 1000 samples from the Chromosomal Aberrations and Heritable\ Diseases collections of the NIGMS Repository were genotyped on the Affymetrix\ Genome-Wide Human SNP 6.0 Array and analyzed for CNVs at the Coriell Institute\ for Medical Research. Genotyping data for many of these samples is available\ through dbGaP.\

    \ \

    \ The genotyped samples represent a diverse set of copy-number variants. The\ selection was weighted to over-sample commonly manifested types of aberrations.\ Karyotyping was performed on all NIGMS Repository cell lines that were\ submitted with reported chromosome abnormalities. When available, the ISCN\ description of the sample, based on G-banding and FISH analysis, is included\ in the phenotypic data. Karyotypes for these cells can be viewed in the\ online Repository catalog.\

    \ \

    \ Field definitions for an item description:\

      \
    • CN State: Copy Number of the imbalance. Note that all CNVs with\ a copy number of 2 are colored neutral (black) and occur on the sex\ chromosomes, where a CN State of 2 should not be interpreted\ as normal, as it would be on an autosome.
      • \
    • Cell Type: Type of cell culture; one of the following:\ B Lymphocyte, Fibroblast, Amniotic fluid-derived cell line or\ Chorionic villus-derived cell line.
      • \
    • Description (Diagnosis): May be a medical diagnosis,\ such as "albinism" or a chromosomal phenotype, such as\ "translocation" or other description.
      • \
    • ISCN nomenclature: A description of the chromosomal\ karyotype in formal ISCN nomenclature.
      • \
    \ \

    \ CN State item coloring:\

      \
    • CN State 0 == score 0
      • \
    • CN State 1 == score 100
      • \
    • CN State 2 == score 200
      • \
    • CN State 3 == score 300
      • \
    • CN State 4 == score 400
      • \
    \ \ Use the score filter limits on the configuration page\ to select desired CN States.\

    \ \

    Credits

    \

    \ We thank Dorit Berlin and Zhenya Tang of the NIGMS Human Genetic Cell\ Repository at the\ Coriell Institute for Medical\ Research for these data.\

    \ \

    References

    \

    \ NCBI dbGaP:\ \ Genotyping NIGMS Chromosomal Aberration and Inherited Disorder Samples.\ \
    \ NIGMS Human Genetic Cell Repository\ online catalog at the Coriell Institute for Medical Research.\ \

    \ phenDis 1 exonArrows off\ group phenDis\ itemRgb on\ longLabel Coriell Cell Line Copy Number Variants\ origAssembly hg19\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ scoreFilterByRange on\ shortLabel Coriell CNVs\ track coriellDelDup\ type bed 9 +\ url http://ccr.coriell.org/Sections/Search/Search.aspx?q=$$\ urlLabel Coriell details:\ visibility hide\ cortexVelmeshevCellType Cortex Cells bigBarChart Cerebral cortex RNA binned by cell type from Velmeshev et al 2019 3 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=autism&gene=$$

    Description

    \

    \ This track displays data from Single-cell genomics identifies cell type-specific\ molecular changes in autism. Single-nucleus RNA sequencing (snRNA-seq)\ was performed on post-mortem cortical tissue samples from patients with autism\ spectrum disorder (ASD) as well as control donors. A total of 17 cell clusters\ were identified using known cell type markers found in Velmeshev et\ al., 2019.

    \ \

    \ This track collection contains five bar chart tracks of RNA expression in the human\ cerebral cortex where cells are grouped by cell type \ (Cortex Cells), diagnosis\ (Cortex Diagnosis), donor \ (Cortex Donor), sample \ (Cortex Sample), and sex\ (Cortex Sex). \ The default track displayed is Cortex Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    immune
    endothelial
    glia
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Cortex Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy cortical samples were taken from 16 controls (ages 4-22) without \ neurological disorders and 15 ASD patients (ages 7-21). A total of 41 post-mortem\ tissue samples were obtained from both the prefrontal cortex (PFC) and anterior\ cingulate cortex (ACC). When present, subcortical white matter was removed\ prior to collection from cortical samples containing all layers of cortical\ grey matter. ASD and control samples were matched for sex and age and processed\ together to minimize batch effects. Nuclei were isolated from brain tissue\ using a glass dounce homogenizer in lysis buffer and then filtered twice\ through a 30 µm cell strainer. Next, samples were processed\ using 10x Genomics 3' library kit and the resulting single-nucleus libraries\ were pooled together and sequenced on an Illumina NovaSeq 6000. This process\ generated 104,559 single-nuclei gene expression profiles in total.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser. The\ UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credit

    \

    \ Thanks to Dmitry Velmeshev and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by by Daniel Schmelter. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Velmeshev D, Schirmer L, Jung D, Haeussler M, Perez Y, Mayer S, Bhaduri A, Goyal N, Rowitch DH,\ Kriegstein AR.\ \ Single-cell genomics identifies cell type-specific molecular changes in autism.\ Science. 2019 May 17;364(6441):685-689.\ PMID: 31097668; PMC: PMC7678724\

    \ singleCell 1 barChartBars astrocyte_(fibrous) astrocyte_(protoplasmic) endothelial_cell interneuron_PVALB+ interneuron_SST+ interneuron_SV2C+ interneuron_VIP+ neuron_L2/3_cortex neuron_L4_cortex neuron_L5/6_corticofugal neuron_L5/6_cortico-cortical microglial_cell neuron_NRGN+_I neuron_NRGN+_II neuron_maturing oligodendrocyte_precursor oligodendrocyte\ barChartColors #81ce00 #81cd00 #01c000 #ebbf00 #ebbf00 #eabe00 #ebbf00 #ecbf00 #ecbf00 #ecbf00 #edbf00 #ef1211 #c8b701 #c5b701 #ebbf00 #c5be01 #86c601\ barChartLimit 4\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/cortexVelmeshev/cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/cortexVelmeshev/cell_type.bb\ defaultLabelFields name2\ html cortexVelmeshev\ labelFields name,name2\ longLabel Cerebral cortex RNA binned by cell type from Velmeshev et al 2019\ parent cortexVelmeshev\ shortLabel Cortex Cells\ track cortexVelmeshevCellType\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=autism&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility pack\ cortexVelmeshevDiagnosis Cortex Diagnosis bigBarChart Cerebral cortex RNA binned by ASD/control diagnosis from Velmeshev et al 2019 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=autism&gene=$$

    Description

    \

    \ This track displays data from Single-cell genomics identifies cell type-specific\ molecular changes in autism. Single-nucleus RNA sequencing (snRNA-seq)\ was performed on post-mortem cortical tissue samples from patients with autism\ spectrum disorder (ASD) as well as control donors. A total of 17 cell clusters\ were identified using known cell type markers found in Velmeshev et\ al., 2019.

    \ \

    \ This track collection contains five bar chart tracks of RNA expression in the human\ cerebral cortex where cells are grouped by cell type \ (Cortex Cells), diagnosis\ (Cortex Diagnosis), donor \ (Cortex Donor), sample \ (Cortex Sample), and sex\ (Cortex Sex). \ The default track displayed is Cortex Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    immune
    endothelial
    glia
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Cortex Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy cortical samples were taken from 16 controls (ages 4-22) without \ neurological disorders and 15 ASD patients (ages 7-21). A total of 41 post-mortem\ tissue samples were obtained from both the prefrontal cortex (PFC) and anterior\ cingulate cortex (ACC). When present, subcortical white matter was removed\ prior to collection from cortical samples containing all layers of cortical\ grey matter. ASD and control samples were matched for sex and age and processed\ together to minimize batch effects. Nuclei were isolated from brain tissue\ using a glass dounce homogenizer in lysis buffer and then filtered twice\ through a 30 µm cell strainer. Next, samples were processed\ using 10x Genomics 3' library kit and the resulting single-nucleus libraries\ were pooled together and sequenced on an Illumina NovaSeq 6000. This process\ generated 104,559 single-nuclei gene expression profiles in total.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser. The\ UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credit

    \

    \ Thanks to Dmitry Velmeshev and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by by Daniel Schmelter. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Velmeshev D, Schirmer L, Jung D, Haeussler M, Perez Y, Mayer S, Bhaduri A, Goyal N, Rowitch DH,\ Kriegstein AR.\ \ Single-cell genomics identifies cell type-specific molecular changes in autism.\ Science. 2019 May 17;364(6441):685-689.\ PMID: 31097668; PMC: PMC7678724\

    \ singleCell 1 barChartBars ASD Control\ barChartColors #ebbf00 #e9bf00\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/cortexVelmeshev/diagnosis.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/cortexVelmeshev/diagnosis.bb\ defaultLabelFields name2\ html cortexVelmeshev\ labelFields name,name2\ longLabel Cerebral cortex RNA binned by ASD/control diagnosis from Velmeshev et al 2019\ parent cortexVelmeshev\ shortLabel Cortex Diagnosis\ track cortexVelmeshevDiagnosis\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=autism&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ cortexVelmeshevDonor Cortex Donor bigBarChart Cerebral cortex RNA binned by organ donor from Velmeshev et al 2019 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=autism&gene=$$

    Description

    \

    \ This track displays data from Single-cell genomics identifies cell type-specific\ molecular changes in autism. Single-nucleus RNA sequencing (snRNA-seq)\ was performed on post-mortem cortical tissue samples from patients with autism\ spectrum disorder (ASD) as well as control donors. A total of 17 cell clusters\ were identified using known cell type markers found in Velmeshev et\ al., 2019.

    \ \

    \ This track collection contains five bar chart tracks of RNA expression in the human\ cerebral cortex where cells are grouped by cell type \ (Cortex Cells), diagnosis\ (Cortex Diagnosis), donor \ (Cortex Donor), sample \ (Cortex Sample), and sex\ (Cortex Sex). \ The default track displayed is Cortex Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    immune
    endothelial
    glia
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Cortex Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy cortical samples were taken from 16 controls (ages 4-22) without \ neurological disorders and 15 ASD patients (ages 7-21). A total of 41 post-mortem\ tissue samples were obtained from both the prefrontal cortex (PFC) and anterior\ cingulate cortex (ACC). When present, subcortical white matter was removed\ prior to collection from cortical samples containing all layers of cortical\ grey matter. ASD and control samples were matched for sex and age and processed\ together to minimize batch effects. Nuclei were isolated from brain tissue\ using a glass dounce homogenizer in lysis buffer and then filtered twice\ through a 30 µm cell strainer. Next, samples were processed\ using 10x Genomics 3' library kit and the resulting single-nucleus libraries\ were pooled together and sequenced on an Illumina NovaSeq 6000. This process\ generated 104,559 single-nuclei gene expression profiles in total.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser. The\ UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credit

    \

    \ Thanks to Dmitry Velmeshev and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by by Daniel Schmelter. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Velmeshev D, Schirmer L, Jung D, Haeussler M, Perez Y, Mayer S, Bhaduri A, Goyal N, Rowitch DH,\ Kriegstein AR.\ \ Single-cell genomics identifies cell type-specific molecular changes in autism.\ Science. 2019 May 17;364(6441):685-689.\ PMID: 31097668; PMC: PMC7678724\

    \ singleCell 1 barChartBars 1823 4341 4849 4899 5144 5163 5242 5278 5294 5387 5391 5403 5408 5419 5531 5538 5554 5565 5577 5841 5864 5879 5893 5936 5939 5945 5958 5976 5978 6032 6033\ barChartColors #e5be00 #e7bf00 #e8bf00 #e9bf00 #c6c200 #ecbf00 #bec100 #e9bf00 #e8bf00 #ebbf00 #e9bf00 #adc600 #e8be00 #e2be00 #e8bf00 #c1c200 #dfbd00 #ebbf00 #e4bf00 #e9bf00 #ecbf00 #e3be00 #e5be00 #d9bf00 #ebbf00 #e3bf00 #eabf00 #ebbf00 #eabf00 #e9bf00 #e8bf00\ barChartLimit 3\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/cortexVelmeshev/donor.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/cortexVelmeshev/donor.bb\ defaultLabelFields name2\ html cortexVelmeshev\ labelFields name,name2\ longLabel Cerebral cortex RNA binned by organ donor from Velmeshev et al 2019\ parent cortexVelmeshev\ shortLabel Cortex Donor\ track cortexVelmeshevDonor\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=autism&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ cortexVelmeshevSample Cortex Sample bigBarChart Cerebral cortex RNA binned by biosample from Velmeshev et al 2019 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=autism&gene=$$

    Description

    \

    \ This track displays data from Single-cell genomics identifies cell type-specific\ molecular changes in autism. Single-nucleus RNA sequencing (snRNA-seq)\ was performed on post-mortem cortical tissue samples from patients with autism\ spectrum disorder (ASD) as well as control donors. A total of 17 cell clusters\ were identified using known cell type markers found in Velmeshev et\ al., 2019.

    \ \

    \ This track collection contains five bar chart tracks of RNA expression in the human\ cerebral cortex where cells are grouped by cell type \ (Cortex Cells), diagnosis\ (Cortex Diagnosis), donor \ (Cortex Donor), sample \ (Cortex Sample), and sex\ (Cortex Sex). \ The default track displayed is Cortex Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    immune
    endothelial
    glia
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Cortex Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy cortical samples were taken from 16 controls (ages 4-22) without \ neurological disorders and 15 ASD patients (ages 7-21). A total of 41 post-mortem\ tissue samples were obtained from both the prefrontal cortex (PFC) and anterior\ cingulate cortex (ACC). When present, subcortical white matter was removed\ prior to collection from cortical samples containing all layers of cortical\ grey matter. ASD and control samples were matched for sex and age and processed\ together to minimize batch effects. Nuclei were isolated from brain tissue\ using a glass dounce homogenizer in lysis buffer and then filtered twice\ through a 30 µm cell strainer. Next, samples were processed\ using 10x Genomics 3' library kit and the resulting single-nucleus libraries\ were pooled together and sequenced on an Illumina NovaSeq 6000. This process\ generated 104,559 single-nuclei gene expression profiles in total.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser. The\ UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credit

    \

    \ Thanks to Dmitry Velmeshev and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by by Daniel Schmelter. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Velmeshev D, Schirmer L, Jung D, Haeussler M, Perez Y, Mayer S, Bhaduri A, Goyal N, Rowitch DH,\ Kriegstein AR.\ \ Single-cell genomics identifies cell type-specific molecular changes in autism.\ Science. 2019 May 17;364(6441):685-689.\ PMID: 31097668; PMC: PMC7678724\

    \ singleCell 1 barChartBars 1823_BA24 4341_BA24 4341_BA46 4849_BA24 4899_BA24 5144_PFC 5163_BA24 5242_BA24 5278_BA24 5278_PFC 5294_BA24 5294_BA9 5387_BA9 5391_BA24 5403_PFC 5408_PFC_Nova 5419_PFC 5531_BA24 5531_BA9 5538_PFC_Nova 5554_BA24 5565_BA24 5565_BA9 5577_BA9 5841_BA9 5864_BA9 5879_PFC_Nova 5893_BA24 5893_PFC 5936_PFC_Nova 5939_BA24 5939_BA9 5945_PFC 5958_BA24 5958_BA9 5976_BA9 5978_BA24 5978_BA9 6032_BA24 6033_BA24 6033_BA9\ barChartColors #e5be00 #e7bf00 #e6bf00 #e8bf00 #e9bf00 #c6c200 #ecbf00 #bec100 #e7bf00 #e6be00 #e4be00 #e9bf00 #ebbf00 #e9bf00 #adc600 #e8be00 #e2be00 #e3be00 #e9bf00 #c1c200 #dfbd00 #ebbf00 #ebbf00 #e4bf00 #e9bf00 #ecbf00 #e3be00 #ebbf00 #cbc000 #d9bf00 #e8bf00 #ecbf00 #e3bf00 #e6bf00 #ecbf00 #ebbf00 #eabf00 #e9bf00 #e9bf00 #e6bf00 #e9be00\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/cortexVelmeshev/sample.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/cortexVelmeshev/sample.bb\ defaultLabelFields name2\ html cortexVelmeshev\ labelFields name,name2\ longLabel Cerebral cortex RNA binned by biosample from Velmeshev et al 2019\ parent cortexVelmeshev\ shortLabel Cortex Sample\ track cortexVelmeshevSample\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=autism&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ cortexVelmeshevSex Cortex Sex bigBarChart Cerebral cortex RNA binned by sex of donor from Velmeshev et al 2019 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=autism&gene=$$

    Description

    \

    \ This track displays data from Single-cell genomics identifies cell type-specific\ molecular changes in autism. Single-nucleus RNA sequencing (snRNA-seq)\ was performed on post-mortem cortical tissue samples from patients with autism\ spectrum disorder (ASD) as well as control donors. A total of 17 cell clusters\ were identified using known cell type markers found in Velmeshev et\ al., 2019.

    \ \

    \ This track collection contains five bar chart tracks of RNA expression in the human\ cerebral cortex where cells are grouped by cell type \ (Cortex Cells), diagnosis\ (Cortex Diagnosis), donor \ (Cortex Donor), sample \ (Cortex Sample), and sex\ (Cortex Sex). \ The default track displayed is Cortex Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    immune
    endothelial
    glia
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Cortex Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy cortical samples were taken from 16 controls (ages 4-22) without \ neurological disorders and 15 ASD patients (ages 7-21). A total of 41 post-mortem\ tissue samples were obtained from both the prefrontal cortex (PFC) and anterior\ cingulate cortex (ACC). When present, subcortical white matter was removed\ prior to collection from cortical samples containing all layers of cortical\ grey matter. ASD and control samples were matched for sex and age and processed\ together to minimize batch effects. Nuclei were isolated from brain tissue\ using a glass dounce homogenizer in lysis buffer and then filtered twice\ through a 30 µm cell strainer. Next, samples were processed\ using 10x Genomics 3' library kit and the resulting single-nucleus libraries\ were pooled together and sequenced on an Illumina NovaSeq 6000. This process\ generated 104,559 single-nuclei gene expression profiles in total.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser. The\ UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credit

    \

    \ Thanks to Dmitry Velmeshev and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by by Daniel Schmelter. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Velmeshev D, Schirmer L, Jung D, Haeussler M, Perez Y, Mayer S, Bhaduri A, Goyal N, Rowitch DH,\ Kriegstein AR.\ \ Single-cell genomics identifies cell type-specific molecular changes in autism.\ Science. 2019 May 17;364(6441):685-689.\ PMID: 31097668; PMC: PMC7678724\

    \ singleCell 1 barChartBars F M\ barChartColors #e8bf00 #ebbf00\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/cortexVelmeshev/sex.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/cortexVelmeshev/sex.bb\ defaultLabelFields name2\ html cortexVelmeshev\ labelFields name,name2\ longLabel Cerebral cortex RNA binned by sex of donor from Velmeshev et al 2019\ parent cortexVelmeshev\ shortLabel Cortex Sex\ track cortexVelmeshevSex\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=autism&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ cortexVelmeshev Cortex Velmeshev Cerebral cortex single cell data from Velmeshev et al 2019 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track displays data from Single-cell genomics identifies cell type-specific\ molecular changes in autism. Single-nucleus RNA sequencing (snRNA-seq)\ was performed on post-mortem cortical tissue samples from patients with autism\ spectrum disorder (ASD) as well as control donors. A total of 17 cell clusters\ were identified using known cell type markers found in Velmeshev et\ al., 2019.

    \ \

    \ This track collection contains five bar chart tracks of RNA expression in the human\ cerebral cortex where cells are grouped by cell type \ (Cortex Cells), diagnosis\ (Cortex Diagnosis), donor \ (Cortex Donor), sample \ (Cortex Sample), and sex\ (Cortex Sex). \ The default track displayed is Cortex Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    immune
    endothelial
    glia
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Cortex Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy cortical samples were taken from 16 controls (ages 4-22) without \ neurological disorders and 15 ASD patients (ages 7-21). A total of 41 post-mortem\ tissue samples were obtained from both the prefrontal cortex (PFC) and anterior\ cingulate cortex (ACC). When present, subcortical white matter was removed\ prior to collection from cortical samples containing all layers of cortical\ grey matter. ASD and control samples were matched for sex and age and processed\ together to minimize batch effects. Nuclei were isolated from brain tissue\ using a glass dounce homogenizer in lysis buffer and then filtered twice\ through a 30 µm cell strainer. Next, samples were processed\ using 10x Genomics 3' library kit and the resulting single-nucleus libraries\ were pooled together and sequenced on an Illumina NovaSeq 6000. This process\ generated 104,559 single-nuclei gene expression profiles in total.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser. The\ UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credit

    \

    \ Thanks to Dmitry Velmeshev and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by by Daniel Schmelter. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Velmeshev D, Schirmer L, Jung D, Haeussler M, Perez Y, Mayer S, Bhaduri A, Goyal N, Rowitch DH,\ Kriegstein AR.\ \ Single-cell genomics identifies cell type-specific molecular changes in autism.\ Science. 2019 May 17;364(6441):685-689.\ PMID: 31097668; PMC: PMC7678724\

    \ singleCell 0 group singleCell\ longLabel Cerebral cortex single cell data from Velmeshev et al 2019\ shortLabel Cortex Velmeshev\ superTrack on\ track cortexVelmeshev\ visibility hide\ cosmicMuts COSMIC bigBed 6 + 3 Catalogue of Somatic Mutations in Cancer V98 0 100 0 0 0 127 127 127 0 0 0 https://cancer.sanger.ac.uk/cosmic/search?q=$$

    Description

    \

    COSMIC, \ the "Catalogue Of Somatic Mutations In Cancer," is an online database of somatic mutations found in \ human cancer. Focused exclusively on non-inherited acquired mutations, COSMIC combines information \ from a range of sources, curating the described relationships between cancer phenotypes and gene \ (and genomic) mutations. These data are then made available in a number of ways including here in the \ UCSC genome browser, on the COSMIC website with custom analytical tools, or via the\ COSMIC sftp server.\ Publications using COSMIC as a data source may cite our reference below.

    \ \

    Methods

    \

    \

    The data in COSMIC are curated from a number of high-quality sources and combined into a single\ resource. The sources include:

    \ \ \ \

    Information on known cancer genes, selected from the \ Cancer Gene Census is curated manually to maximize its descriptive content. \ \

    \ UCSC was provided with the COSMIC annotations directly. The columns were reconfigured to match\ our BED format, and 35 mutations were removed as they had illegal coordinates (start>stop).\ The resulting file was converted to a bigBed for display using the bedToBigBed utility.\

    \ \

    Display

    \
      \
    • Dense - Indicate the positions where COSMIC mutations have been annotated in a single horizontal\ track.
      • \
    • Squish - Indicate each mutation, in vertical pileups where appropriate, while minimizing \ screen space used.
      • \
    • Pack - Indicate each mutation with Genomic Mutation ID (COSVnnnnn).
      • \
    • Full - Show each mutation in detail, one per line, with Genomic Mutation ID (COSVnnnnn).
      • \
    \

    \ Clicking into any item also displays the reference allele, alternate allele, and the\ Cosmic legacy mutation identifier (COSNnnnnn). Outlinks can also be found directly to COSMIC\ for additional information.\

    \ \

    Data Access

    \

    \ The limited data available to UCSC can be explored interactively \ with the Table Browser,\ or the Data Integrator. For automated analysis, the data may be\ queried from our REST API. Please refer to our\ mailing list archives\ for questions, or our Data Access FAQ for more\ information.

    \

    \ The complete data can be explored and downloaded via the COSMIC \ website.\

    \ \

    Contacts

    \

    For further information on COSMIC, or for help with the information provided, please contact\ \ cosmic@sanger.\ ac.\ uk.\

    \ \

    References

    \

    \ Forbes SA, Beare D, Boutselakis H, Bamford S, Bindal N, Tate J, Cole CG, Ward S, Dawson E, Ponting L\ et al.\ \ COSMIC: somatic cancer genetics at high-resolution.\ Nucleic Acids Res. 2017 Jan 4;45(D1):D777-D783.\ PMID: 27899578; PMC: PMC5210583\

    \ phenDis 1 bigDataUrl /gbdb/hg38/cosmic/cosmic.bb\ dataVersion COSMIC v98\ group phenDis\ longLabel Catalogue of Somatic Mutations in Cancer V98\ noScoreFilter on\ shortLabel COSMIC\ track cosmicMuts\ type bigBed 6 + 3\ url https://cancer.sanger.ac.uk/cosmic/search?q=$$\ urlLabel Genomic Mutation ID:\ cosmicRegions COSMIC Regions bigBed 8 + Catalogue of Somatic Mutations in Cancer V82 0 100 200 0 0 227 127 127 0 0 0 http://cancer.sanger.ac.uk/cosmic/mutation/overview?id=$$

    Description

    \

    COSMIC, \ the "Catalogue Of Somatic Mutations In Cancer," is an online database of somatic mutations found in \ human cancer. Focused exclusively on non-inherited acquired mutations, COSMIC combines information \ from a range of sources, curating the described relationships between cancer phenotypes and gene \ (and genomic) mutations. These data are then made available in a number of ways including here in the \ UCSC genome browser, on the COSMIC website with custom analytical tools, or via the\ COSMIC sftp server.\ Publications using COSMIC as a data source may cite our reference below.

    \ \

    Methods

    \

    \

    The data in COSMIC are curated from a number of high-quality sources and combined into a single\ resource. The sources include:

    \ \ \ \

    Information on known cancer genes, selected from the \ Cancer Gene Census is curated manually to maximize its descriptive content. \ \

    \ The data was downloaded from the COSMIC sftp server. It was first converted to a bed file using\ the UCSC utility cosmicToBed, then converted into a bigBed file using the UCSC utility bedToBigBed.\ The bigBed file is used to generate the track. \

    \ \

    Display

    \
      \
    • Dense - Indicate the positions where COSMIC mutations have been annotated in a single horizontal\ track.
      • \
    • Squish - Indicate each mutation, in vertical pileups where appropriate, while minimizing \ screen space used.
      • \
    • Pack - Indicate each mutation with COSMIC identifier (COSMnnnnn).
      • \
    • Full - Show each mutation in detail, one per line, with COSM identifier (COSMnnnnn).
      • \
    \ \

    Data Access

    \

    \ Due to licensed material, we do not allow downloads or Table Browser access for the bigBed data. The\ raw data underlying this track can be explored and downloaded via the COSMIC \ website. The\ CosmicMutantExport.tsv.gz file was converted to a BED file using the cosmicToBed\ utility, and then converted into a bigBed file using the bedToBigBed utility. You can\ download these tools from the\ utilities directory.\

    \ \

    Contacts

    \

    For further information on COSMIC, or for help with the information provided, please contact\ \ cosmic@sanger.\ ac.\ uk.\

    \ \

    References

    \

    \ Forbes SA, Beare D, Boutselakis H, Bamford S, Bindal N, Tate J, Cole CG, Ward S, Dawson E, Ponting L\ et al.\ \ COSMIC: somatic cancer genetics at high-resolution.\ Nucleic Acids Res. 2017 Jan 4;45(D1):D777-D783.\ PMID: 27899578; PMC: PMC5210583\

    \ phenDis 1 bigDataUrl /gbdb/hg38/cosmic/cosMutHg38V82.bb\ color 200, 0, 0\ group phenDis\ html cosmicRegions\ labelFields cosmLabel\ longLabel Catalogue of Somatic Mutations in Cancer V82\ mouseOverField _mouseOver\ noScoreFilter on\ pennantIcon snowflake.png ../goldenPath/newsarch.html#091523 "COSMIC data is now updated on the COSMIC track (not COSMIC Regions). See news archive for details."\ searchIndex name,cosmLabel\ shortLabel COSMIC Regions\ tableBrowser off\ track cosmicRegions\ type bigBed 8 +\ url http://cancer.sanger.ac.uk/cosmic/mutation/overview?id=$$\ urlLabel COSMIC ID:\ iscaViewTotal Coverage (Graphical) bedGraph 4 Clinical Genome Resource (ClinGen) CNVs 2 100 0 0 0 127 127 127 0 0 0 phenDis 0 alwaysZero on\ longLabel Clinical Genome Resource (ClinGen) CNVs\ maxHeightPixels 128:57:16\ parent iscaComposite\ shortLabel Coverage (Graphical)\ track iscaViewTotal\ type bedGraph 4\ view cov\ viewLimits 0:100\ viewUi on\ visibility full\ cpgIslandSuper CpG Islands bed 4 + CpG Islands (Islands < 300 Bases are Light Green) 0 100 0 100 0 128 228 128 0 0 0

    Description

    \ \

    CpG islands are associated with genes, particularly housekeeping\ genes, in vertebrates. CpG islands are typically common near\ transcription start sites and may be associated with promoter\ regions. Normally a C (cytosine) base followed immediately by a \ G (guanine) base (a CpG) is rare in\ vertebrate DNA because the Cs in such an arrangement tend to be\ methylated. This methylation helps distinguish the newly synthesized\ DNA strand from the parent strand, which aids in the final stages of\ DNA proofreading after duplication. However, over evolutionary time,\ methylated Cs tend to turn into Ts because of spontaneous\ deamination. The result is that CpGs are relatively rare unless\ there is selective pressure to keep them or a region is not methylated\ for some other reason, perhaps having to do with the regulation of gene\ expression. CpG islands are regions where CpGs are present at\ significantly higher levels than is typical for the genome as a whole.

    \ \

    \ The unmasked version of the track displays potential CpG islands\ that exist in repeat regions and would otherwise not be visible\ in the repeat masked version.\

    \ \

    \ By default, only the masked version of the track is displayed. To view the\ unmasked version, change the visibility settings in the track controls at\ the top of this page.\

    \ \

    Methods

    \ \

    CpG islands were predicted by searching the sequence one base at a\ time, scoring each dinucleotide (+17 for CG and -1 for others) and\ identifying maximally scoring segments. Each segment was then\ evaluated for the following criteria:\ \

      \ \
    • GC content of 50% or greater
      • \ \
    • length greater than 200 bp
      • \ \
    • ratio greater than 0.6 of observed number of CG dinucleotides to the expected number on the \ \ basis of the number of Gs and Cs in the segment
      • \
    \

    \

    \ The entire genome sequence, masking areas included, was\ used for the construction of the track Unmasked CpG.\ The track CpG Islands is constructed on the sequence after\ all masked sequence is removed.\

    \ \

    The CpG count is the number of CG dinucleotides in the island. \ The Percentage CpG is the ratio of CpG nucleotide bases\ (twice the CpG count) to the length. The ratio of observed to expected \ CpG is calculated according to the formula (cited in \ Gardiner-Garden et al. (1987)):\ \ 

        Obs/Exp CpG = Number of CpG * N / (Number of C * Number of G)
    \ \ where N = length of sequence.

    \

    \ The calculation of the track data is performed by the following command sequence:\ 

    \
twoBitToFa assembly.2bit stdout | maskOutFa stdin hard stdout \\\
  | cpg_lh /dev/stdin 2> cpg_lh.err \\\
    |  awk '{$2 = $2 - 1; width = $3 - $2;  printf("%s\\t%d\\t%s\\t%s %s\\t%s\\t%s\\t%0.0f\\t%0.1f\\t%s\\t%s\\n", $1, $2, $3, $5, $6, width, $6, width*$7*0.01, 100.0*2*$6/width, $7, $9);}' \\\
     | sort -k1,1 -k2,2n > cpgIsland.bed\
    \ The unmasked track data is constructed from\ twoBitToFa -noMask output for the twoBitToFa command.\

    \ \

    Data access

    \

    \ CpG islands and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator.\ All the tables can also be queried directly from our public MySQL\ servers, with more information available on our\ help page as well as on\ our blog.

    \

    \ The source for the cpg_lh program can be obtained from\ src/utils/cpgIslandExt/.\ The cpg_lh program binary can be obtained from: http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/cpg_lh (choose "save file")\

    \ \

    Credits

    \ \

    This track was generated using a modification of a program developed by G. Miklem and L. Hillier \ (unpublished).

    \ \

    References

    \ \

    \ Gardiner-Garden M, Frommer M.\ \ CpG islands in vertebrate genomes.\ J Mol Biol. 1987 Jul 20;196(2):261-82.\ PMID: 3656447\

    \ regulation 1 altColor 128,228,128\ color 0,100,0\ group regulation\ html cpgIslandSuper\ longLabel CpG Islands (Islands < 300 Bases are Light Green)\ shortLabel CpG Islands\ superTrack on\ track cpgIslandSuper\ type bed 4 +\ crisprAllTargets CRISPR Targets bigBed 9 + CRISPR/Cas9 -NGG Targets, whole genome 0 100 0 0 0 127 127 127 0 0 0 http://crispor.tefor.net/crispor.py?org=$D&pos=$S:${&pam=NGG

    Description

    \ \

    \ This track shows the DNA sequences targetable by CRISPR RNA guides using\ the Cas9 enzyme from S. pyogenes (PAM: NGG) over the entire\ human (hg38) genome. CRISPR target sites were annotated with\ predicted specificity (off-target effects) and predicted efficiency\ (on-target cleavage) by various\ algorithms through the tool CRISPOR. Sp-Cas9 usually cuts double-stranded DNA three or \ four base pairs 5' of the PAM site.\

    \ \

    Display Conventions and Configuration

    \ \

    \ The track "CRISPR Targets" shows all potential -NGG target sites across the genome.\ The target sequence of the guide is shown with a thick (exon) bar. The PAM\ motif match (NGG) is shown with a thinner bar. Guides\ are colored to reflect both predicted specificity and efficiency. Specificity\ reflects the "uniqueness" of a 20mer sequence in the genome; the less unique a\ sequence is, the more likely it is to cleave other locations of the genome\ (off-target effects). Efficiency is the frequency of cleavage at the target\ site (on-target efficiency).

    \ \

    Shades of gray stand for sites that are hard to target specifically, as the\ 20mer is not very unique in the genome:

    \ \ \ \ \
    impossible to target: target site has at least one identical copy in the genome and was not scored
    hard to target: many similar sequences in the genome that alignment stopped, repeat?
    hard to target: target site was aligned but results in a low specificity score <= 50 (see below)
    \ \

    Colors highlight targets that are specific in the genome (MIT specificity > 50) but have different predicted efficiencies:

    \ \ \ \ \ \
    unable to calculate Doench/Fusi 2016 efficiency score
    low predicted cleavage: Doench/Fusi 2016 Efficiency percentile <= 30
    medium predicted cleavage: Doench/Fusi 2016 Efficiency percentile > 30 and < 55
    high predicted cleavage: Doench/Fusi 2016 Efficiency > 55

    \ \

    \ Mouse-over a target site to show predicted specificity and efficiency scores:
    \

      \
    1. The MIT Specificity score summarizes all off-targets into a single number from\ 0-100. The higher the number, the fewer off-target effects are expected. We\ recommend guides with an MIT specificity > 50.
      2. \
    2. The efficiency score tries to predict if a guide leads to rather strong or\ weak cleavage. According to (Haeussler et al. 2016), the \ Doench 2016 Efficiency score should be used to select the guide with the highest\ cleavage efficiency when expressing guides from RNA PolIII Promoters such as\ U6. Scores are given as percentiles, e.g. "70%" means that 70% of mammalian\ guides have a score equal or lower than this guide. The raw score number is\ also shown in parentheses after the percentile.
      3. \
    3. The Moreno-Mateos 2015 Efficiency\ score should be used instead of the Doench 2016 score when transcribing the\ guide in vitro with a T7 promoter, e.g. for injections in mouse, zebrafish or\ Xenopus embryos. The Moreno-Mateos score is given in percentiles and the raw value in parentheses,\ see the note above.
    \

    \ \

    Click onto features to show all scores and predicted off-targets with up to\ four mismatches. The Out-of-Frame score by Bae et al. 2014\ is correlated with\ the probability that mutations induced by the guide RNA will disrupt the open\ reading frame. The authors recommend out-of-frame scores > 66 to create\ knock-outs with a single guide efficiently.

    \ \

    Off-target sites are sorted by the CFD (Cutting Frequency Determination)\ score (Doench et al. 2016).\ The higher the CFD score, the more likely there is off-target cleavage at that site.\ Off-targets with a CFD score < 0.023 are not shown on this page, but are available when\ following the link to the external CRISPOR tool.\ When compared against experimentally validated off-targets by\ Haeussler et al. 2016, the large majority of predicted\ off-targets with CFD scores < 0.023 were false-positives. For storage and performance\ reasons, on the level of individual off-targets, only CFD scores are available.

    \ \

    Methods

    \ \

    Relationship between predictions and experimental data

    \ \

    \ Like most algorithms, the MIT specificity score is not always a perfect\ predictor of off-target effects. Despite low scores, many tested guides\ caused few and/or weak off-target cleavage when tested with whole-genome assays\ (Figure 2 from Haeussler\ et al. 2016), as shown below, and the published data contains few data points\ with high specificity scores. Overall though, the assays showed that the higher\ the specificity score, the lower the off-target effects.

    \ \ \ \

    Similarly, efficiency scoring is not very accurate: guides with low\ scores can be efficient and vice versa. As a general rule, however, the higher\ the score, the less likely that a guide is very inefficient. The\ following histograms illustrate, for each type of score, how the share of\ inefficient guides drops with increasing efficiency scores:\

    \ \ \ \

    When reading this plot, keep in mind that both scores were evaluated on\ their own training data. Especially for the Moreno-Mateos score, the\ results are too optimistic, due to overfitting. When evaluated on independent\ datasets, the correlation of the prediction with other assays was around 25%\ lower, see Haeussler et al. 2016. At the time of\ writing, there is no independent dataset available yet to determine the\ Moreno-Mateos accuracy for each score percentile range.

    \ \

    Track methods

    \

    \ The entire human (hg38) genome was scanned for the -NGG motif. Flanking 20mer\ guide sequences were\ aligned to the genome with BWA and scored with MIT Specificity scores using the\ command-line version of crispor.org. Non-unique guide sequences were skipped.\ Flanking sequences were extracted from the genome and input for Crispor\ efficiency scoring, available from the Crispor downloads page, which\ includes the Doench 2016, Moreno-Mateos 2015 and Bae\ 2014 algorithms, among others.

    \

    \ Note that the Doench 2016 scores were updated by\ the Broad institute in 2017 ("Azimuth" update). As a result, earlier versions of\ the track show the old Doench 2016 scores and this version of the track shows new\ Doench 2016 scores. Old and new scores are almost identical, they are\ correlated to 0.99 and for more than 80% of the guides the difference is below 0.02.\ However, for very few guides, the difference can be bigger. In case of doubt, we recommend\ the new scores. Crispor.org can display both\ scores and many more with the "Show all scores" link.

    \ \

    Data Access

    \

    \ Positional data can be explored interactively with the \ Table\ Browser or the Data Integrator.\ For small programmatic positional queries, the track can be accessed using our \ REST API. For genome-wide data or \ automated analysis, CRISPR genome annotations can be downloaded from\ our download server\ as a bigBedFile.

    \

    \ The files for this track are called crispr.bb, which lists positions and\ scores, and crisprDetails.tab, which has information about off-target matches. Individual\ regions or whole genome annotations can be obtained using our tool bigBedToBed,\ which can be compiled from the source code or downloaded as a pre-compiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here. The tool\ can also be used to obtain only features within a given range, e.g.

    \

    \ bigBedToBed\ http://hgdownload.soe.ucsc.edu/gbdb/hg38/crisprAllTargets/crispr.bb -chrom=chr21\ -start=0 -end=1000000 stdout

    \ \

    Credits

    \ \

    \ Track created by Maximilian Haeussler, with helpful input\ from Jean-Paul Concordet (MNHN Paris) and Alberto Stolfi (NYU).\

    \ \

    References

    \ \

    \ Haeussler M, Schönig K, Eckert H, Eschstruth A, Mianné J, Renaud JB, Schneider-Maunoury S,\ Shkumatava A, Teboul L, Kent J et al.\ Evaluation of off-target and on-target scoring algorithms and integration into the\ guide RNA selection tool CRISPOR.\ Genome Biol. 2016 Jul 5;17(1):148.\ PMID: 27380939; PMC: PMC4934014\

    \ \

    \ Bae S, Kweon J, Kim HS, Kim JS.\ \ Microhomology-based choice of Cas9 nuclease target sites.\ Nat Methods. 2014 Jul;11(7):705-6.\ PMID: 24972169\

    \ \

    \ Doench JG, Fusi N, Sullender M, Hegde M, Vaimberg EW, Donovan KF, Smith I, Tothova Z, Wilen C,\ Orchard R et al.\ \ Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9.\ Nat Biotechnol. 2016 Feb;34(2):184-91.\ PMID: 26780180; PMC: PMC4744125\

    \ \

    \ Hsu PD, Scott DA, Weinstein JA, Ran FA, Konermann S, Agarwala V, Li Y, Fine EJ, Wu X, Shalem O\ et al.\ \ DNA targeting specificity of RNA-guided Cas9 nucleases.\ Nat Biotechnol. 2013 Sep;31(9):827-32.\ PMID: 23873081; PMC: PMC3969858\

    \ \

    \ Moreno-Mateos MA, Vejnar CE, Beaudoin JD, Fernandez JP, Mis EK, Khokha MK, Giraldez AJ.\ \ CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo.\ Nat Methods. 2015 Oct;12(10):982-8.\ PMID: 26322839; PMC: PMC4589495\

    \ genes 1 bigDataUrl /gbdb/hg38/crisprAll/crispr.bb\ denseCoverage 0\ detailsTabUrls _offset=/gbdb/$db/crisprAll/crisprDetails.tab\ group genes\ html crisprAll\ itemRgb on\ longLabel CRISPR/Cas9 -NGG Targets, whole genome\ mouseOverField _mouseOver\ noGenomeReason This track is too big for whole-genome Table Browser access, it would lead to a timeout in your internet browser. Small regional queries can work, but large regions, such as entire chromosomes, will fail. Please see the CRISPR Track documentation, the section "Data Access", for bulk-download options and remote access via the bedToBigBed tool. API access should always work. Contact us if you encounter difficulties with accessing the data.\ scoreFilterMax 100\ scoreLabel MIT Guide Specificity Score\ shortLabel CRISPR Targets\ tableBrowser tbNoGenome\ track crisprAllTargets\ type bigBed 9 +\ url http://crispor.tefor.net/crispor.py?org=$D&pos=$S:${&pam=NGG\ urlLabel Click here to show this guide on Crispor.org, with expression oligos, validation primers and more\ visibility hide\ crossTissueMaps Cross Tissue Nuclei Single Nuclei sequenced across many tissues 0 100 0 0 0 127 127 127 0 0 0

    \ Description

    \

    \ This track collection shows data from \ Single-nucleus cross-tissue molecular reference maps toward\ understanding disease gene function. The dataset covers ~200,000 single nuclei\ from a total of 16 human donors across 25 samples, using 4 different sample preparation\ protocols followed by droplet based single-cell RNA-seq. The samples were obtained from\ frozen tissue as part of the Genotype-Tissue Expression (GTEx) project.\ Samples were taken from the esophagus, skeletal muscle, heart, lung, prostate, breast,\ and skin. The dataset includes 43 broad cell classes, some specific to certain tissues\ and some shared across all tissue types.\

    \ \

    \ This track collection contains three bar chart tracks of RNA expression. The first track,\ Cross Tissue Nuclei, allows\ cells to be grouped together and faceted on up to 4 categories: tissue, cell class, cell subclass,\ and cell type. The second track,\ Cross Tissue Details, allows\ cells to be grouped together and faceted on up to 7 categories: tissue, cell class, cell subclass,\ cell type, granular cell type, sex, and donor. The third track,\ GTEx Immune Atlas,\ allows cells to be grouped together and faceted on up to 5 categories: tissue, cell type, cell\ class, sex, and donor.\

    \ \

    \ Please see the\ GTEx portal\ for further interactive displays and additional data.

    \ \

    Display Conventions and Configuration

    \

    \ Tissue-cell type combinations in the Full and Combined tracks are\ colored by which cell type they belong to in the below table:\

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell Type
    Endothelial
    Epithelial
    Glia
    Immune
    Neuron
    Stromal
    Other
    \

    \ \

    \ Tissue-cell type combinations in the Immune Atlas track are shaded according\ to the below table:\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell Type
    Inflammatory Macrophage
    Lung Macrophage
    Monocyte/Macrophage FCGR3A High
    Monocyte/Macrophage FCGR3A Low
    Macrophage HLAII High
    Macrophage LYVE1 High
    Proliferating Macrophage
    Dendritic Cell 1
    Dendritic Cell 2
    Mature Dendritic Cell
    Langerhans
    CD14+ Monocyte
    CD16+ Monocyte
    LAM-like
    Other
    \

    \ \

    Methods

    \

    \ Using the previously collected tissue samples from the Genotype-Tissue Expression\ project, nuclei were isolated using four different protocols and sequenced\ using droplet based single cell RNA-seq. CellBender v2.1 and other standard quality\ control techniques were applied, resulting in 209,126 nuclei profiles across eight\ tissues, with a mean of 918 genes and 1519 transcripts per profile.\

    \ \

    \ Data from all samples was integrated with a conditional variation autoencoder\ in order to correct for multiple sources of variation like sex, and protocol\ while preserving tissue and cell type specific effects.\

    \ \

    \ For detailed methods, please refer to Eraslan et al, or the\ \ GTEx portal website.\

    \ \

    UCSC Methods

    \

    \ The gene expression files were downloaded from the\ \ GTEx portal. The UCSC command line utilities matrixClusterColumns,\ matrixToBarChartBed, and bedToBigBed were used to transform\ these into a bar chart format bigBed file that can be visualized.\ The UCSC utilities can be found on\ our download server.\

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions or our Data Access FAQ for more\ information.

    \ \

    Credits

    \

    Thanks to the GTEx Consortium for creating and analyzing these data.

    \ \

    References

    \

    \ Eraslan G, Drokhlyansky E, Anand S, Fiskin E, Subramanian A, Slyper M, Wang J, Van Wittenberghe N,\ Rouhana JM, Waldman J et al.\ \ Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function.\ Science. 2022 May 13;376(6594):eabl4290.\ PMID: 35549429; PMC: PMC9383269\

    \ singleCell 0 configureByPopup off\ group singleCell\ longLabel Single Nuclei sequenced across many tissues\ shortLabel Cross Tissue Nuclei\ superTrack on\ track crossTissueMaps\ visibility hide\ dbSnpArchive dbSNP Archive bed 6 + dbSNP Track Archive 0 100 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

    Description

    \ \

    \ This composite track contains information about single nucleotide polymorphisms (SNPs)\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP, available from\ ftp.ncbi.nih.gov/snp.\ You can click into each track for a version/subset-specific description.

    \

    \ This collection includes numbered versions of the entire dbSNP datasets\ (All SNP) as well as three tracks with subsets of the items in that version. \ Here is information on each of the subsets:\

      \
    • dbSNP 153: The dbSNP build 153 is composed of 5 subtracks. Click the track for\ a description of the subtracks.
      • \
    • Common SNPs: SNPs that have a minor allele frequency\ of at least 1% and are mapped to a single location in the reference\ genome assembly. Frequency data are not available for all SNPs,\ so this subset is incomplete.
      • \
    • Flagged SNPs: SNPs flagged as clinically associated by dbSNP, \ mapped to a single location in the reference genome assembly, and \ not known to have a minor allele frequency of at least 1%.\ Frequency data are not available for all SNPs, so this subset may\ include some SNPs whose true minor allele frequency is 1% or greater.
      • \
    • Mult. SNPs: SNPs that have been mapped to multiple locations\ in the reference genome assembly.
      • \
    \

    \

    \ The default maximum weight for this track is 1, so unless\ the setting is changed in the track controls, SNPs that map to multiple genomic \ locations will be omitted from display. When a SNP's flanking sequences \ map to multiple locations in the reference genome, it calls into question \ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\

    \ \

    Interpreting and Configuring the Graphical Display

    \

    \ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\

    \ \

    \ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\

    \
      \ \
    • \ \ Class: Describes the observed alleles
      \
        \
      • Single - single nucleotide variation: all observed alleles are single nucleotides\ \ (can have 2, 3 or 4 alleles)
        • \
      • In-del - insertion/deletion
        • \
      • Heterozygous - heterozygous (undetermined) variation: allele contains string '(heterozygous)'
        • \
      • Microsatellite - the observed allele from dbSNP is a variation in counts of short tandem repeats
        • \
      • Named - the observed allele from dbSNP is given as a text name instead of raw sequence, e.g., (Alu)/-
        • \
      • No Variation - the submission reports an invariant region in the surveyed sequence
        • \
      • Mixed - the cluster contains submissions from multiple classes
        • \
      • Multiple Nucleotide Polymorphism (MNP) - the alleles are all of the same length, and length > 1
        • \
      • Insertion - the polymorphism is an insertion relative to the reference assembly
        • \
      • Deletion - the polymorphism is a deletion relative to the reference assembly
        • \
      • Unknown - no classification provided by data contributor
        • \
      \
      • \ \ \
    • \ \ Validation: Method used to validate\ \ the variant (each variant may be validated by more than one method)
      \
        \
      • By Frequency - at least one submitted SNP in cluster has frequency data submitted
        • \
      • By Cluster - cluster has at least 2 submissions, with at least one submission assayed with a non-computational method
        • \
      • By Submitter - at least one submitter SNP in cluster was validated by independent assay
        • \
      • By 2 Hit/2 Allele - all alleles have been observed in at least 2 chromosomes
        • \
      • By HapMap (human only) - submitted by\ HapMap project
        • \
      • By 1000Genomes (human only) - submitted by\ \ 1000Genomes project
        • \
      • Unknown - no validation has been reported for this variant
        • \
      \
      • \
    • \ \ Function: dbSNP's predicted functional effect of variant on RefSeq transcripts,\ both curated (NM_* and NR_*) as in the RefSeq Genes track and predicted (XM_* and XR_*),\ not shown in UCSC Genome Browser.\ A variant may have more than one functional role if it overlaps\ multiple transcripts.\ These terms and definitions are from the Sequence Ontology (SO); click on a term to view it in the\ MISO Sequence Ontology Browser.
      \
        \
      • Unknown - no functional classification provided (possibly intergenic)
        • \
      • synonymous_variant -\ \ A sequence variant where there is no resulting change to the encoded amino acid\ \ (dbSNP term: coding-synon)
        • \
      • intron_variant -\ \ A transcript variant occurring within an intron\ \ (dbSNP term: intron)
        • \
      • downstream_gene_variant -\ \ A sequence variant located 3' of a gene\ \ (dbSNP term: near-gene-3)
        • \
      • upstream_gene_variant -\ \ A sequence variant located 5' of a gene\ \ (dbSNP term: near-gene-5)
        • \
      • nc_transcript_variant -\ \ A transcript variant of a non coding RNA gene\ \ (dbSNP term: ncRNA)
        • \ \
      • stop_gained -\ \ A sequence variant whereby at least one base of a codon is changed, resulting in\ \ a premature stop codon, leading to a shortened transcript\ \ (dbSNP term: nonsense)
        • \
      • missense_variant -\ \ A sequence variant, where the change may be longer than 3 bases, and at least\ \ one base of a codon is changed resulting in a codon that encodes for a\ \ different amino acid\ \ (dbSNP term: missense)
        • \
      • stop_lost -\ \ A sequence variant where at least one base of the terminator codon (stop)\ \ is changed, resulting in an elongated transcript\ \ (dbSNP term: stop-loss)
        • \
      • frameshift_variant -\ \ A sequence variant which causes a disruption of the translational reading frame,\ \ because the number of nucleotides inserted or deleted is not a multiple of three\ \ (dbSNP term: frameshift)
        • \
      • inframe_indel -\ \ A coding sequence variant where the change does not alter the frame\ \ of the transcript\ \ (dbSNP term: cds-indel)
        • \
      • 3_prime_UTR_variant -\ \ A UTR variant of the 3' UTR\ \ (dbSNP term: untranslated-3)
        • \
      • 5_prime_UTR_variant -\ \ A UTR variant of the 5' UTR\ \ (dbSNP term: untranslated-5)
        • \
      • splice_acceptor_variant -\ \ A splice variant that changes the 2 base region at the 3' end of an intron\ \ (dbSNP term: splice-3)
        • \
      • splice_donor_variant -\ \ A splice variant that changes the 2 base region at the 5' end of an intron\ \ (dbSNP term: splice-5)
        • \
      \ In the Coloring Options section of the track controls page,\ function terms are grouped into several categories, shown here with default colors:\ \
      • \
    • \ \ Molecule Type: Sample used to find this variant
      \
        \
      • Genomic - variant discovered using a genomic template
        • \
      • cDNA - variant discovered using a cDNA template
        • \
      • Unknown - sample type not known
        • \
      \
      • \
    • \ \ Unusual Conditions (UCSC): UCSC checks for several anomalies \ that may indicate a problem with the mapping, and reports them in the \ Annotations section of the SNP details page if found:\
        \
      • AlleleFreqSumNot1 - Allele frequencies do not sum\ to 1.0 (+-0.01). This SNP's allele frequency data are\ \ probably incomplete.
        • \
      • DuplicateObserved,\ MixedObserved - Multiple distinct insertion SNPs have \ \ been mapped to this location, with either the same inserted \ \ sequence (Duplicate) or different inserted sequence (Mixed).
        • \
      • FlankMismatchGenomeEqual,\ \ FlankMismatchGenomeLonger,\ \ FlankMismatchGenomeShorter - NCBI's alignment of\ the flanking sequences had at least one mismatch or gap\ \ near the mapped SNP position.\ (UCSC's re-alignment of flanking sequences to the genome may\ be informative.)
        • \
      • MultipleAlignments - This SNP's flanking sequences \ align to more than one location in the reference assembly.
        • \
      • NamedDeletionZeroSpan - A deletion (from the\ genome) was observed but the annotation spans 0 bases.\ (UCSC's re-alignment of flanking sequences to the genome may\ be informative.)
        • \
      • NamedInsertionNonzeroSpan - An insertion (into the\ genome) was observed but the annotation spans more than 0\ bases. (UCSC's re-alignment of flanking sequences to the\ genome may be informative.)
        • \
      • NonIntegerChromCount - At least one allele\ frequency corresponds to a non-integer (+-0.010000) count of\ chromosomes on which the allele was observed. The reported\ total sample count for this SNP is probably incorrect.
        • \
      • ObservedContainsIupac - At least one observed allele \ from dbSNP contains an IUPAC ambiguous base (e.g., R, Y, N).
        • \
      • ObservedMismatch - UCSC reference allele does not\ match any observed allele from dbSNP. This is tested only\ \ for SNPs whose class is single, in-del, insertion, deletion,\ \ mnp or mixed.
        • \
      • ObservedTooLong - Observed allele not given (length\ too long).
        • \
      • ObservedWrongFormat - Observed allele(s) from dbSNP\ have unexpected format for the given class.
        • \
      • RefAlleleMismatch - The reference allele from dbSNP\ does not match the UCSC reference allele, i.e., the bases in\ \ the mapped position range.
        • \
      • RefAlleleRevComp - The reference allele from dbSNP\ matches the reverse complement of the UCSC reference\ allele.
        • \
      • SingleClassLongerSpan - All observed alleles are\ single-base, but the annotation spans more than 1 base.\ (UCSC's re-alignment of flanking sequences to the genome may\ be informative.)
        • \
      • SingleClassZeroSpan - All observed alleles are\ single-base, but the annotation spans 0 bases. (UCSC's\ re-alignment of flanking sequences to the genome may be\ informative.)
        • \
      \ Another condition, which does not necessarily imply any problem,\ is noted:\
        \
      • SingleClassTriAllelic, SingleClassQuadAllelic - \ Class is single and three or four different bases have been\ \ observed (usually there are only two).
        • \
      \
      • \
    • \ \ Miscellaneous Attributes (dbSNP): several properties extracted\ from dbSNP's SNP_bitfield table\ (see dbSNP_BitField_v5.pdf for details)\
        \
      • Clinically Associated (human only) - SNP is in OMIM and/or at \ \ least one submitter is a Locus-Specific Database. This does\ \ not necessarily imply that the variant causes any disease,\ \ only that it has been observed in clinical studies.
        • \
      • Appears in OMIM/OMIA - SNP is mentioned in \ \ Online Mendelian Inheritance in Man for \ \ human SNPs, or Online Mendelian Inheritance in Animals for \ \ non-human animal SNPs. Some of these SNPs are quite common,\ \ others are known to cause disease; see OMIM/OMIA for more\ \ information.
        • \
      • Has Microattribution/Third-Party Annotation - At least\ \ one of the SNP's submitters studied this SNP in a biomedical\ \ setting, but is not a Locus-Specific Database or OMIM/OMIA.
        • \
      • Submitted by Locus-Specific Database - At least one of\ \ the SNP's submitters is associated with a database of variants\ \ associated with a particular gene. These variants may or may\ \ not be known to be causative.
        • \
      • MAF >= 5% in Some Population - Minor Allele Frequency is \ \ at least 5% in at least one population assayed.
        • \
      • MAF >= 5% in All Populations - Minor Allele Frequency is \ \ at least 5% in all populations assayed.
        • \
      • Genotype Conflict - Quality check: different genotypes \ \ have been submitted for the same individual.
        • \
      • Ref SNP Cluster has Non-overlapping Alleles - Quality\ \ check: this reference SNP was clustered from submitted SNPs\ \ with non-overlapping sets of observed alleles.
        • \
      • Some Assembly's Allele Does Not Match Observed - \ \ Quality check: at least one assembly mapped by dbSNP has an allele\ at the mapped position that is not present in this SNP's observed\ alleles.
        • \
      \
      • \
    \ Several other properties do not have coloring options, but do have \ some filtering options:\
      \
    • \ \ Average heterozygosity: Calculated by dbSNP as described in \ \ Computation of Average Heterozygosity and Standard Error for dbSNP RefSNP Clusters.\
        \
      • Average heterozygosity should not exceed 0.5 for bi-allelic \ single-base substitutions.
        • \
      \
      • \
    • \ \ Weight: Alignment quality assigned by dbSNP
      \
        \
      • Weight can be 0, 1, 2, 3 or 10.
        • \
      • Weight = 1 are the highest quality alignments.
        • \
      • Weight = 0 and weight = 10 are excluded from the data set.
        • \
      • A filter on maximum weight value is supported, which defaults to 1\ on all tracks except the Mult. SNPs track, which defaults to 3.
        • \
      \
      • \
    • \ \ Submitter handles: These are short, single-word identifiers of\ labs or consortia that submitted SNPs that were clustered into this\ reference SNP by dbSNP (e.g., 1000GENOMES, ENSEMBL, KWOK). Some SNPs\ have been observed by many different submitters, and some by only a\ single submitter (although that single submitter may have tested a\ large number of samples).\
      • \
    • \ \ AlleleFrequencies: Some submissions to dbSNP include \ allele frequencies and the study's sample size \ (i.e., the number of distinct chromosomes, which is two times the\ number of individuals assayed, a.k.a. 2N). dbSNP combines all\ available frequencies and counts from submitted SNPs that are \ clustered together into a reference SNP.\
      • \
    \ \

    \ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\

    \ \

    Insertions/Deletions

    \

    \ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\

    \ \

    UCSC Re-alignment of flanking sequences

    \

    \ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\

    \

    \ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\

    \ \

    Data Sources and Methods

    \ \

    \ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/database/\ (for human, organism_tax_id = human_9606;\ for mouse, organism_tax_id = mouse_10090).\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/rs_fasta/\

    \
      \
    • Coordinates, orientation, location type and dbSNP reference allele data\ were obtained from files like b138_SNPContigLoc.bcp.gz and \ b138_ContigInfo.bcp.gz.
      • \
    • b138_SNPMapInfo.bcp.gz provides the alignment weights.\
    • Functional classification was obtained from files like \ b138_SNPContigLocusId.bcp.gz. The internal database representation\ uses dbSNP's function terms, but for display in SNP details pages,\ these are translated into\ Sequence Ontology terms.
      • \
    • Validation status and heterozygosity were obtained from SNP.bcp.gz.
      • \
    • SNPAlleleFreq.bcp.gz and ../shared/Allele.bcp.gz provided allele frequencies.\ For the human assembly, allele frequencies were also taken from\ SNPAlleleFreq_TGP.bcp.gz .
      • \
    • Submitter handles were extracted from Batch.bcp.gz, SubSNP.bcp.gz and \ SNPSubSNPLink.bcp.gz.
      • \
    • SNP_bitfield.bcp.gz provided miscellaneous properties annotated by dbSNP,\ such as clinically-associated. See the document \ dbSNP_BitField_v5.pdf for details.
      • \
    • The header lines in the rs_fasta files were used for molecule type,\ class and observed polymorphism.
      • \
    \ \

    Data Access

    \

    \ Note: It is not recommeneded to use LiftOver to convert SNPs between assemblies,\ and more information about how to convert SNPs between assemblies can be found on the following\ FAQ entry.

    \

    \ The raw data can be explored interactively with the \ Table Browser,\ Data Integrator, or \ Variant Annotation Integrator.\ For automated analysis, the genome annotation files can be downloaded in their entirety for \ hg38,\ hg19, \ and mm10 as\ (snp*.txt.gz). \ You can also make queries using the UCSC Genome Browser \ JSON API or \ public MySQL server. Please refer to our \ mailing list archives\ for questions and example queries, or our \ Data Access FAQ for more information.\

    \ \

    Orthologous Alleles (human assemblies only)

    \

    \ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\

      \
    • class = 'single'
      • \
    • mapped position in the human reference genome is one base long
      • \
    • aligned to only one location in the human reference genome
      • \
    • not aligned to a chrN_random chrom
      • \
    • biallelic (not tri- or quad-allelic)
      • \
    \ \ In some cases the orthologous allele is unknown; these are set to 'N'.\ If a lift was not possible, we set the orthologous allele to '?' and the \ orthologous start and end position to 0 (zero).\ \

    Masked FASTA Files (human assemblies only)

    \ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download in the\ genome's snp*Mask folder.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exlcude problematic SNPs.\ \

    References

    \

    \ Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \ dbSNP: the NCBI database of genetic variation.\ Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\ PMID: 11125122; PMC: PMC29783\

    \ varRep 1 cartVersion 3\ group varRep\ html ../../dbSnpArchive\ longLabel dbSNP Track Archive\ maxWindowToDraw 10000000\ shortLabel dbSNP Archive\ superTrack on\ track dbSnpArchive\ type bed 6 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ dbVarSv dbVar Common Struct Var NCBI Curated Common Structural Variants from dbVar 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The tracks listed here contain data from the\ \ nstd186 (NCBI Curated Common Structural Variants) study. This is a collection of structural\ variants (SV) originally submitted to dbVar which are part of a study with at least 100 samples and\ have an allele frequency of >=0.01 in at least one population. The complete dataset is imported\ from these common-population studies:\

    \ \

    \ gnomAD Structural Variants\ (nstd166):\ Catalog of SVs detected from the sequencing of the complete genome of 10,847 unrelated\ individuals from the GnomAD v2.1 release.

    \

    \ 1000 Genomes Consortium Phase 3 Integrated SV\ (estd219):\ Structural variants of the 1000 Genomes project Phase 3 as reported in a separate article\ specifically dedicated to the analysis of SVs. Many of these data are identical to those reported\ in the estd214 study.

    \

    \ DECIPHER Common CNVs\ (nstd183):\ Consensus set of common population CNVs selected from high-resolution controls sets where frequency\ information is available.\

    \ \

    \ There are two tracks in this collection:\

    \

    \ \

    Display Conventions

    \

    \ These tracks are multi-view composite tracks that contain multiple data types (views). Each view\ within a track has separate display controls, as described\ here. Some dbVar tracks\ contain multiple subtracks, corresponding to subsets of data. If a track contains many subtracks,\ only some subtracks will be displayed by default. The user can select which subtracks are displayed\ via the display controls on the track details page.\

    \ \

    Data Access

    \

    \ The raw data can be explored interactively with the\ Table Browser, or the\ Data Integrator. For automated analysis,\ the data may be queried from our\ REST API. \

    The data can also be found directly from the dbVar \ nstd186 data access, as well as in the\ \ dbVar Track Hub, where additional subtracks are included. For questions about\ dbVar track data, please contact \ dbvar@ncbi.\ nlm.\ nih.\ gov.\ \

    \ \

    \ \

    Credits

    \

    \ Thanks to the dbVAR team at NCBI, especially John Lopez and Timothy Hefferon for technical \ coordination and consultation, and to Christopher Lee, Anna Benet-Pages, and Daniel Schmelter of \ the Genome Browser team for engineering the track display.

    \ \

    References

    \ \

    \ Lappalainen I, Lopez J, Skipper L, Hefferon T, Spalding JD, Garner J, Chen C, Maguire M, Corbett M,\ Zhou G et al.\ \ DbVar and DGVa: public archives for genomic structural variation.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D936-41.\ PMID: 23193291; PMC: PMC3531204\

    \ \ varRep 0 group varRep\ html dbVarCurated\ longLabel NCBI Curated Common Structural Variants from dbVar\ shortLabel dbVar Common Struct Var\ superTrack on\ track dbVarSv\ dbVar_common dbVar Common SV bigBed 9 + . NCBI dbVar Curated Common Structural Variants 3 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ This track displays common copy number genomic variations from nstd186 (NCBI Curated Common\ Structural Variants), divided into subtracks according to population and source of original\ submission.\

    \ \

    \ This curated dataset of all structural variants in dbVar includes variants from gnomAD, 1000\ Genomes Phase 3, and DECIPHER (dbVar studies\ nstd166,\ estd219, and\ nstd183, respectively).\

    \ \

    \ It only includes copy number gain, copy number loss, copy number variation, duplications, and\ deletions (including mobile element deletions), that are part of a study with at least 100 samples,\ include allele frequency data, and have an allele frequency of >=0.01 in at least one population.\

    \ \

    \ For more information on the number of variant calls and latest statistics for nstd186 see\ Summary of nstd186\ (NCBI Curated Common Structural Variants).\

    \ \

    \ There are six subtracks in this track set:\

    \ \

    \

      \
    • NCBI Curated Common SVs: African - \ Variants with AF >= 0.01 for \ African Population.
      • \
    • NCBI Curated Common SVs: European -\ Variants with AF >= 0.01 for \ European Population.
      • \
    • NCBI Curated Common SVs: all populations -\ Variants with AF >= 0.01 for \ Global Population.
      • \
    • NCBI Curated Common SVs: all populations from gnomAD - \ Variants with AF >= 0.01 from \ gnomAD Structural Variants.
      • \
    • NCBI Curated Common SVs: all populations from 1000 Genomes - \ Variants with AF >= 0.01 from \ 1000 Genomes Consortium Phase 3 Integrated SV.
      • \
    • NCBI Curated Common SVs: all populations from DECIPHER -\ Variants with AF >= 0.01 from \ DECIPHER Consensus CNVs.
      • \
    \

    \ \

    Display Conventions and Configuration

    \ Items in all subtracks follow the same conventions: items are colored by variant type, and are \ based on the dbVar colors described in the \ dbVar Overview page. \ Red for copy number loss or deletion,\ blue for copy number gain or duplication, and\ violet for copy number variation. \

    \ \

    \ Mouseover on items indicates genes affected, size, variant type, and allele frequencies (AF). \ All tracks can be filtered according to the Variant Size and Variant Type.\

    \ \

    Data Access

    \ The raw data can be explored interactively with the\ Table Browser, or the\ Data Integrator. For automated analysis,\ the data may be queried from our\ REST API. \

    \

    The data can also be found directly from the dbVar \ nstd186 data access, as well as in the\ \ dbVar Track Hub, where additional subtracks are included. For questions about\ dbVar track data, please contact \ dbvar@ncbi.nlm.nih.gov\ .\ \

    \ \ \

    Credits

    \

    \ Thanks to the dbVAR team at NCBI, especially John Lopez and Timothy Hefferon for technical \ coordination and consultation, and to Christopher Lee, Anna Benet-Pages, and Daniel Schmelter, of \ the Genome Browser team for engineering the track display. \

    \ \

    References

    \

    \ Lappalainen I, Lopez J, Skipper L, Hefferon T, Spalding JD, Garner J, Chen C, Maguire M, Corbett M,\ Zhou G et al.\ \ DbVar and DGVa: public archives for genomic structural variation.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D936-41.\ PMID: 23193291; PMC: PMC3531204\

    \ \ \ varRep 1 compositeTrack on\ filterLabel.length Variant Size\ filterLabel.type Variant Type\ filterValues.length Under 10KB,10KB to 100KB,100KB to 1MB,Over 1MB\ filterValues.type alu deletion,copy number gain,copy number loss,copy number variation,deletion,duplication,herv deletion,line1 deletion,sva deletion\ group varRep\ html dbVarCommon\ itemRgb on\ longLabel NCBI dbVar Curated Common Structural Variants\ mouseOverField label\ searchIndex name\ shortLabel dbVar Common SV\ superTrack dbVarSv pack\ track dbVar_common\ type bigBed 9 + .\ visibility pack\ dbVar_conflict dbVar Conflict SV bigBed 9 + . NCBI dbVar Curated Conflict Variants 3 100 0 0 0 127 127 127 0 0 0

    Description

    \ The track NCBI dbVar Curated Common SVs: Conflicts with Pathogenic highlights loci where\ common copy number variants from\ nstd186 (NCBI Curated \ Common Structural Variants) overlap with structural Variants with clinical assertions,\ submitted to ClinVar by external labs (Clinical Structural \ Variants - nstd102).\

    \ \

    \ Overlap in the track refers to reciprocal overlap between variants in the common\ (NCBI Curated Common Structural Variants) versus clinical (ClinVar Long Variants)\ tracks. Reciprocal overlap values can be anywhere from 10% to 100%.\

    \ \

    \ For more information on the number of variant calls and latest statistics for nstd186 see\ Summary of nstd186\ (NCBI Curated Common Structural Variants).\

    \ \

    Display Conventions and Configuration

    \ \

    \ Items in all subtracks follow the same conventions: items are colored by variant type, and are\ based on the dbVar colors described in the\ dbVar Overview page.\ Red for copy number loss or deletion,\ blue for copy number gain or duplication, and\ violet for copy number variation. \

    \ \

    \ Mouseover on items indicates genes affected, size, variant type, and allele frequencies (AF). \ All tracks can be filtered according to the variant length, variant type and \ variant overlap. This last filter defines four bins within that range from which the \ user can choose.\

    \ \ \

    Data Access

    \ The raw data can be explored interactively with the\ Table Browser, or the\ Data Integrator. For automated analysis,\ the data may be queried from our\ REST API.

    \ \

    \ The data can also be found directly from the dbVar \ nstd186 data access, as well as in the\ \ dbVar Track Hub, where additional subtracks are included. For questions about\ dbVar track data, please contact \ dbvar@ncbi.\ nlm.\ nih.\ gov.\ \

    \ \ Thanks to the dbVAR team at NCBI, especially John Lopez and Timothy Hefferon for technical \ coordination and consultation, and to Christopher Lee, Anna Benet-Pages, and Daniel Schmelter of \ the Genome Browser team for engineering the track display.\

    \ \

    References

    \

    \ Lappalainen I, Lopez J, Skipper L, Hefferon T, Spalding JD, Garner J, Chen C, Maguire M, Corbett M,\ Zhou G et al.\ \ DbVar and DGVa: public archives for genomic structural variation.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D936-41.\ PMID: 23193291; PMC: PMC3531204\

    \ \ varRep 1 compositeTrack on\ filterLabel.length Variant Length\ filterLabel.overlap Variant Overlap\ filterLabel.type Variant Type\ filterValues.length Under 10KB,10KB to 100KB,100KB to 1MB,Over 1MB\ filterValues.overlap 10 to 25,25 to 50,50 to 75,75 to 90,90 to 100\ filterValues.type alu deletion,copy number gain,copy number loss,copy number variation,deletion,duplication,herv deletion,line1 deletion,sva deletion\ html dbVarConflict\ itemRgb on\ longLabel NCBI dbVar Curated Conflict Variants\ mouseOverField label\ searchIndex name\ shortLabel dbVar Conflict SV\ superTrack dbVarSv pack\ track dbVar_conflict\ type bigBed 9 + .\ visibility pack\ decipher DECIPHER CNVs bigBed 9 + DECIPHER CNVs 0 100 0 0 0 127 127 127 0 0 0 https://www.deciphergenomics.org/patient/$$

    Description

    \ \
    \

    NOTE:
    \ While the DECIPHER database is \ open to the public, users seeking information about a personal medical or\ genetic condition are urged to consult with a qualified physician for\ diagnosis and for answers to personal questions.\

    \

    Because the UCSC Genes mappings for CNVs are based on associations from\ RefSeq and UniProt, they are dependent on any interpretations from those\ sources. Furthermore, because many DECIPHER records refer to multiple gene\ names, or syndromes not tightly mapped to individual genes, the associations\ in this track should be treated with skepticism and any conclusions\ based on them should be carefully scrutinized using independent\ resources.\

    \

    Data Display Agreement Notice
    \ These data are only available for display in the Browser, and not for bulk\ download. Access to bulk data may be obtained directly from DECIPHER\ (https://www.deciphergenomics.org/about/data-sharing) and is subject to a\ Data Access Agreement, in which the user certifies that no attempt to\ identify individual patients will be undertaken. The same restrictions\ apply to the public data displayed at UCSC in the UCSC Genome Browser;\ no one is authorized to attempt to identify patients by any means.\

    \

    These data are made available as soon as possible and may be a\ pre-publication release. For information on the proper use of DECIPHER\ data, please see https://www.deciphergenomics.org/about/data-sharing.\

    \

    The DECIPHER consortium provides these data in good faith as a research\ tool, but without verifying the accuracy, clinical validity, or utility of\ the data. The DECIPHER consortium makes no warranty, express or implied,\ nor assumes any legal liability or responsibility for any purpose for\ which the data are used.\

    \
    \ \

    \ The \ DECIPHER\ database of submicroscopic chromosomal imbalance \ collects clinical information about chromosomal \ microdeletions/duplications/insertions, translocations and inversions, \ and displays this information on the human genome map.\

    \ This track shows genomic regions of reported cases and their \ associated phenotype information. All data have passed the strict\ consent requirements of the DECIPHER project and are approved for\ unrestricted public release. Clicking the Patient View ID link\ brings up a more detailed informational page on the patient at the \ DECIPHER web site. \ \

    Display Conventions and Configuration

    \

    \ The genomic locations of DECIPHER variants are labeled with the DECIPHER variant descriptions. \ Mouseover on items shows variant details, clinical interpretation, and associated conditions. \ Further information on each variant is displayed on the details page by a click onto any variant. \

    \ \

    \ For the CNVs track, the entries are colored by the type of variant:\

      \
    • red for loss
      • \
    • blue for gain
      • \
    • grey for amplification
      • \
    \

    \ \

    \ A light-to-dark color gradient indicates the clinical significance of each variant, with \ the lightest shade being benign, to the darkest shade being pathogenic. Detailed information on the \ CNV color code is described here.\ Items can be filtered according to the size of the variant, variant type, and clinical significance \ using the track Configure options.\

    \ \

    \ For the SNVs track, the entries are colored according to the estimated clinical significance \ of the variant:\

      \
    • black for likely or definitely pathogenic
      • \
    • dark grey for uncertain or unknown
      • \
    • light grey for likely or definitely benign
      • \
    \

    \ \

    Method

    \

    \ Data provided by the DECIPHER project group are imported and processed\ to create a simple BED track to annotate the genomic regions associated\ with individual patients.\

    \ \ \

    Contact

    \

    \ For more information on DECIPHER, please contact\ \ contact@deciphergenomics.\ org\

    \ \

    References

    \

    \ Firth HV, Richards SM, Bevan AP, Clayton S, Corpas M, Rajan D, Van Vooren S, Moreau Y, Pettett RM,\ Carter NP.\ \ DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources.\ Am J Hum Genet. 2009 Apr;84(4):524-33.\ PMID: 19344873; PMC: PMC2667985\

    \ phenDis 1 bigDataUrl /gbdb/hg38/decipher/decipherCnv.bb\ filter.size 0\ filterByRange.size on\ filterLimits.size 2:170487333\ filterValues.pathogenicity Benign,Likely Benign,Likely Pathogenic,Pathogenic,Uncertain,Unknown\ filterValues.variant_class Amplification,Copy-Number Gain,Deletion,Duplication,Duplication/Trip\ group phenDis\ itemRgb on\ longLabel DECIPHER CNVs\ mergeSpannedItems on\ mouseOverField _mouseOver\ searchIndex name\ shortLabel DECIPHER CNVs\ tableBrowser off knownCanonToDecipher knownToDecipher decipherRaw\ track decipher\ type bigBed 9 +\ url https://www.deciphergenomics.org/patient/$$\ urlLabel Decipher Patient View:\ visibility hide\ decipherSnvs DECIPHER SNVs bed 4 DECIPHER: Chromosomal Imbalance and Phenotype in Humans (SNVs) 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \
    \

    NOTE:
    \ While the DECIPHER database is \ open to the public, users seeking information about a personal medical or\ genetic condition are urged to consult with a qualified physician for\ diagnosis and for answers to personal questions.\

    \

    Because the UCSC Genes mappings for CNVs are based on associations from\ RefSeq and UniProt, they are dependent on any interpretations from those\ sources. Furthermore, because many DECIPHER records refer to multiple gene\ names, or syndromes not tightly mapped to individual genes, the associations\ in this track should be treated with skepticism and any conclusions\ based on them should be carefully scrutinized using independent\ resources.\

    \

    Data Display Agreement Notice
    \ These data are only available for display in the Browser, and not for bulk\ download. Access to bulk data may be obtained directly from DECIPHER\ (https://www.deciphergenomics.org/about/data-sharing) and is subject to a\ Data Access Agreement, in which the user certifies that no attempt to\ identify individual patients will be undertaken. The same restrictions\ apply to the public data displayed at UCSC in the UCSC Genome Browser;\ no one is authorized to attempt to identify patients by any means.\

    \

    These data are made available as soon as possible and may be a\ pre-publication release. For information on the proper use of DECIPHER\ data, please see https://www.deciphergenomics.org/about/data-sharing.\

    \

    The DECIPHER consortium provides these data in good faith as a research\ tool, but without verifying the accuracy, clinical validity, or utility of\ the data. The DECIPHER consortium makes no warranty, express or implied,\ nor assumes any legal liability or responsibility for any purpose for\ which the data are used.\

    \
    \ \

    \ The \ DECIPHER\ database of submicroscopic chromosomal imbalance \ collects clinical information about chromosomal \ microdeletions/duplications/insertions, translocations and inversions, \ and displays this information on the human genome map.\

    \ This track shows genomic regions of reported cases and their \ associated phenotype information. All data have passed the strict\ consent requirements of the DECIPHER project and are approved for\ unrestricted public release. Clicking the Patient View ID link\ brings up a more detailed informational page on the patient at the \ DECIPHER web site. \ \

    Display Conventions and Configuration

    \

    \ The genomic locations of DECIPHER variants are labeled with the DECIPHER variant descriptions. \ Mouseover on items shows variant details, clinical interpretation, and associated conditions. \ Further information on each variant is displayed on the details page by a click onto any variant. \

    \ \

    \ For the CNVs track, the entries are colored by the type of variant:\

      \
    • red for loss
      • \
    • blue for gain
      • \
    • grey for amplification
      • \
    \

    \ \

    \ A light-to-dark color gradient indicates the clinical significance of each variant, with \ the lightest shade being benign, to the darkest shade being pathogenic. Detailed information on the \ CNV color code is described here.\ Items can be filtered according to the size of the variant, variant type, and clinical significance \ using the track Configure options.\

    \ \

    \ For the SNVs track, the entries are colored according to the estimated clinical significance \ of the variant:\

      \
    • black for likely or definitely pathogenic
      • \
    • dark grey for uncertain or unknown
      • \
    • light grey for likely or definitely benign
      • \
    \

    \ \

    Method

    \

    \ Data provided by the DECIPHER project group are imported and processed\ to create a simple BED track to annotate the genomic regions associated\ with individual patients.\

    \ \ \

    Contact

    \

    \ For more information on DECIPHER, please contact\ \ contact@deciphergenomics.\ org\

    \ \

    References

    \

    \ Firth HV, Richards SM, Bevan AP, Clayton S, Corpas M, Rajan D, Van Vooren S, Moreau Y, Pettett RM,\ Carter NP.\ \ DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources.\ Am J Hum Genet. 2009 Apr;84(4):524-33.\ PMID: 19344873; PMC: PMC2667985\

    \ phenDis 1 color 0,0,0\ group phenDis\ html decipher\ longLabel DECIPHER: Chromosomal Imbalance and Phenotype in Humans (SNVs)\ nextExonText Right edge\ prevExonText Left edge\ shortLabel DECIPHER SNVs\ tableBrowser off decipherSnvsRaw\ track decipherSnvs\ type bed 4\ visibility hide\ caddDel Deletions bigBed 9 + CADD 1.6 Score: Deletions - label is length of deletion 1 100 100 130 160 177 192 207 0 0 0

    Description

    \ \

    This track collection shows Combined Annotation Dependent Depletion scores.\ CADD is a tool for scoring the deleteriousness of single nucleotide variants as\ well as insertion/deletion variants in the human genome.

    \ \

    \ Some mutation annotations\ tend to exploit a single information type (e.g., phastCons or phyloP for\ conservation) and/or are restricted in scope (e.g., to missense changes). Thus,\ a broadly applicable metric that objectively weights and integrates diverse\ information is needed. Combined Annotation Dependent Depletion (CADD) is a\ framework that integrates multiple annotations into one metric by contrasting\ variants that survived natural selection with simulated mutations.\

    \ \

    \ CADD scores strongly correlate with allelic diversity, pathogenicity of both\ coding and non-coding variants, experimentally measured regulatory effects,\ and also rank causal variants within individual genome sequences with a higher\ value than non-causal variants. \ Finally, CADD scores of complex trait-associated variants from genome-wide\ association studies (GWAS) are significantly higher than matched controls and\ correlate with study sample size, likely reflecting the increased accuracy of\ larger GWAS.\

    \ \

    \ A CADD score represents a ranking not a prediction, and no threshold is defined\ for a specific purpose. Higher scores are more likely to be deleterious: \ Scores are \ \ 

      10 * -log of the rank
    \ \ so that variants with scores above 20 are \ predicted to be among the 1.0% most deleterious possible substitutions in \ the human genome. We recommend thinking carefully about what threshold is \ appropriate for your application.\

    \ \

    Display Conventions and Configuration

    \

    \ There are six subtracks of this track: four for single-nucleotide mutations,\ one for each base, showing all possible substitutions, \ one for insertions and one for deletions. All subtracks show the CADD Phred\ score on mouseover. Zooming in shows the exact score on mouseover, same\ basepair = score 0.0.

    \

    \ PHRED-scaled scores are normalized to all potential ~9 billion SNVs, and\ thereby provide an externally comparable unit for analysis. For example, a\ scaled score of 10 or greater indicates a raw score in the top 10% of all\ possible reference genome SNVs, and a score of 20 or greater indicates a raw\ score in the top 1%, regardless of the details of the annotation set, model\ parameters, etc.\

    \

    \ The four single-nucleotide mutation tracks have a default viewing range of\ score 10 to 50. As explained in the paragraph above, that results in\ slightly less than 10% of the data displayed. The \ deletion and insertion tracks have a default filter of 10-100, because they\ display discrete items and not graphical data.\

    \ \

    \ Single nucleotide variants (SNV): For SNVs, at every\ genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing \ the reference allele, e.g., A to A, is always set to zero.\

    \

    \ When using this track, zoom in until you can see every basepair at the\ top of the display. Otherwise, there are several nucleotides per pixel under \ your mouse cursor and instead of an actual score, the tooltip text will show\ the average score of all nucleotides under the cursor. This is indicated by\ the prefix "~" in the mouseover. Averages of scores are not useful for any\ application of CADD.\

    \ \

    Insertions and deletions: Scores are also shown on mouseover for a\ set of insertions and deletions. On hg38, the set has been obtained from\ gnomAD3. On hg19, the set of indels has been obtained from various sources\ (gnomAD2, ExAC, 1000 Genomes, ESP). If your insertion or deleletion of interest\ is not in the track, you will need to use CADD's\ online scoring tool\ to obtain them.

    \ \

    Data access

    \

    \ CADD scores are freely available for all non-commercial applications from\ the CADD website.\ For commercial applications, see\ the license instructions there.\

    \ \

    \ The CADD data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ The files for this track are called a.bw, c.bw, g.bw, t.bw, ins.bb and del.bb. Individual\ regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\
    \ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd/a.bw stdout\
    \ or\
    \ bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd/ins.bb stdout

    \ \

    Methods

    \ \

    \ Data were converted from the files provided on\ the CADD Downloads website,\ provided by the Kircher lab, using\ \ custom Python scripts, \ documented in our \ makeDoc files.\

    \ \

    Credits

    \

    \ Thanks to the CADD development team for providing precomputed data as simple tab-separated files.\

    \ \

    References

    \

    \ Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J.\ \ A general framework for estimating the relative pathogenicity of human genetic variants.\ Nat Genet. 2014 Mar;46(3):310-5.\ PMID: 24487276;\ PMC: PMC3992975\

    \ \

    \ Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M.\ \ CADD: predicting the deleteriousness of variants throughout the human genome.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D886-D894.\ PMID: 30371827;\ PMC: PMC6323892\

    \ phenDis 1 bigDataUrl /gbdb/hg38/cadd/del.bb\ filter.score 10:100\ filterByRange.score on\ filterLabel.score Show only items with PHRED scale score of\ filterLimits.score 0:100\ html caddSuper\ longLabel CADD 1.6 Score: Deletions - label is length of deletion\ mouseOver Mutation: $change CADD Phred score: $phred\ parent caddSuper\ shortLabel Deletions\ track caddDel\ type bigBed 9 +\ visibility dense\ cnvDevDelay Development Delay gvf Copy Number Variation Morbidity Map of Developmental Delay 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ Enrichment of large copy number variants (CNVs) has been linked to severe pediatric disease\ including developmental delay, intellectual disability and autism spectrum disorder. The\ association of individual loci with specific disorders, however, has still been problematic.\

    \ \

    \ This track shows CNVs from cases of developmental delay along with healthy control sets from two\ separate studies. The study by Cooper et al. (2011) analyzed samples from 15,767 children\ with various developmental disabilities and compared them with samples from 8,329 adult controls to\ produce a detailed genome-wide morbidity map of developmental delay and congenital birth defects.\ The study by Coe et al. (2014) further expanded the morbidity map by analyzing 13,318 new\ case samples along with 11,255 new controls.\

    \ \

    Display Conventions and Configuration

    \ \

    \ This is a composite track consisting of a Case subtrack and a Control subtrack. To turn a subtrack\ on or off, toggle the checkbox to the left of the subtrack name in the track controls at the top of\ the track description page.\

    \ \

    \ Items in this track are colored red for copy number loss and\ blue for copy number gain.\

    \ \

    Methods

    \ \

    \ The samples were analyzed using nine different CGH platforms with initial CNV calls filtered as\ described in Coe et al. (2014).\

    \ \

    \ Final CNV calls were decoupled from identifying information and submitted to dbVar as\ nstd54 and\ nstd100\ for unrestricted release.\

    \ \

    \ The 15,767 case individuals from the Cooper study comprise nstd54 sampleset 1, while the 8,329\ control individuals from the Cooper study comprise nstd54 samplesets 2-12. The 13,318 case\ individuals from the Coe study were combined with the Cooper case individuals to comprise nstd100\ sampleset 1. The 11,255 control individuals from the Coe study comprise nsdt100 samplesets 2 and 3.\

    \ \

    \ The Case subtrack was constructed using nstd100 sampleset 1. The Control subtrack was constructed by\ combining nstd100 samplesets 2 and 3 with nstd54 samplesets 2-12.\

    \ \

    Credits

    \ \

    \ We would like to thank Gregory Cooper, Brad Coe and the\ Eichler Lab at the University of\ Washington for providing the data for this track.\

    \ \

    References

    \ \

    \ Coe BP, Witherspoon K, Rosenfeld JA, van Bon BW, Vulto-van Silfhout AT, Bosco P, Friend KL, Baker C,\ Buono S, Vissers LE et al.\ \ Refining analyses of copy number variation identifies specific genes associated with developmental\ delay.\ Nat Genet. 2014 Oct;46(10):1063-71.\ PMID: 25217958; PMC: PMC4177294\

    \ \

    \ Cooper GM, Coe BP, Girirajan S, Rosenfeld JA, Vu TH, Baker C, Williams C, Stalker H, Hamid R, Hannig\ V et al.\ \ A copy number variation morbidity map of developmental delay.\ Nat Genet. 2011 Aug 14;43(9):838-46.\ PMID: 21841781; PMC: PMC3171215\

    \ phenDis 1 compositeTrack on\ group phenDis\ longLabel Copy Number Variation Morbidity Map of Developmental Delay\ noScoreFilter .\ shortLabel Development Delay\ track cnvDevDelay\ type gvf\ visibility hide\ dgvGold DGV Gold Standard bigBed 12 + Database of Genomic Variants: Gold Standard Variants 0 100 0 0 0 127 127 127 0 0 0 http://dgv.tcag.ca/gb2/gbrowse_details/dgv2_hg38?ref=$S;start=${;end=$};name=$$;class=Sequence varRep 1 bigDataUrl /gbdb/hg38/dgv/dgvGold.bb\ longLabel Database of Genomic Variants: Gold Standard Variants\ mouseOver ID:$name; Position; $chrom:${chromStart}-${chromEnd}; Type:$variant_sub_type; Frequency:$Frequency\ parent dgvPlus\ searchIndex name\ shortLabel DGV Gold Standard\ track dgvGold\ type bigBed 12 +\ url http://dgv.tcag.ca/gb2/gbrowse_details/dgv2_hg38?ref=$S;start=${;end=$};name=$$;class=Sequence\ dgvPlus DGV Struct Var bed 9 + Database of Genomic Variants: Structural Variation (CNV, Inversion, In/del) 0 100 0 0 0 127 127 127 0 0 0 http://dgv.tcag.ca/dgv/app/variant?id=$$&ref=$D

    Description

    \

    \ This track displays copy number variants (CNVs), insertions/deletions (InDels),\ inversions and inversion breakpoints annotated by the\ Database of Genomic Variants (DGV), which\ contains genomic variations observed in healthy individuals.\ DGV focuses on structural variation, defined as\ genomic alterations that involve segments of DNA that are larger than\ 1000 bp. Insertions/deletions of 50 bp or larger are also included.\

    \ \

    Display Conventions

    \

    \ This track contains three subtracks:\

    \

      \
    • Structural Variant Regions: annotations that have been generated from one or more reported\ structural variants at the same location.\
      • \
    • Supporting Structural Variants: the sample-level reported structural variants.\
      • \
    • Gold Standard Variants: curated variants from a selected number of studies in DGV.\
      • \
    \

    \ Color is used in both subtracks to indicate the type of variation:\

      \
    • Inversions and\ inversion breakpoints are purple.\
      • \ \
    • CNVs and InDels are blue if there is a\ gain in size relative to the reference.\
      • \ \
    • CNVs and InDels are red if there is a\ loss in size relative to the reference.\
      • \ \
    • CNVs and InDels are brown if there are reports of\ both a loss and a gain in size\ relative to the reference.\
      • \
    \

    \

    \ The DGV Gold Standard subtrack utilizes a boxplot-like display to represent the \ merging of records as explained in the Methods section below. In this track, the \ middle box (where applicable), represents the high confidence location of the CNV, \ while the thin lines and end boxes represent the possible range of the CNV.\

    \

    \ Clicking on a variant leads to a page with detailed information about the variant, \ such as the study reference and PubMed abstract link, the study's method and any\ genes overlapping the variant. Also listed, if available, are the sequencing or array platform\ used for the study, a sample cohort description, sample size, sample ID(s) in which\ the variant was observed, observed gains and observed losses.\ If the particular variant is a merged variant, links to genome browser views of \ the supporting variants are listed. If the particular variant is a supporting variant,\ a link to the genome browser view of its merged variant is displayed.\ A link to DGV's Variant Details page for each variant is also provided.\

    \

    \ For most variants, DGV uses accessions from peer archives of structural variation\ (dbVar\ at NCBI or DGVa at EBI).\ These accessions begin with either "essv",\ "esv", "nssv", or "nsv", followed by a number.\ Variant submissions processed by EBI begin with "e"\ and those processed by NCBI begin with "n".\

    \

    \ Accessions with ssv are for variant calls on a particular sample, and if they\ are copy number variants, they generally indicate whether the change is a gain\ or loss. \ In a few studies the ssv represents the variant called by a single\ algorithm. If multiple algorithms were used, overlapping ssv's from\ the same individual would be combined to generate a sample level\ sv. \

    \

    \ If there are many samples analyzed in a study, and if there are many\ samples which have the same variant, there will be multiple ssv's with\ the same start and end coordinates.\ These sample level variants are then merged and combined to form a\ representative variant that highlights the common variant found in\ that study. The result is called a structural variant (sv) record.\ Accessions with sv are for regions asserted by submitters to contain\ structural variants, and often span ssv elements for both losses and\ gains. dbVar and DGVa do not record numbers of losses and gains\ encompassed within sv regions.\

    \

    \ DGV merges clusters of variants that share at least 70% reciprocal\ overlap in size/location, and assigns an accession beginning with\ "dgv", followed by an internal variant serial number,\ followed by an abbreviated study id. For example,\ the first merged variant from the Shaikh et al. 2009 study (study\ accession=nstd21) would be dgv1n21. The second merged variant would be\ dgv2n21 and so forth.\ Since in this case there is an additional level of clustering,\ it is possible for an "sv" variant to be both a merged\ variant and a supporting variant.\

    \

    \ For most sv and dgv variants, DGV displays the total number of\ sample-level gains and/or losses at the bottom of their variant detail\ page. Since each ssv variant is for one sample, its total is 1.\

    \ \

    Methods

    \

    \ Published structural variants are imported from peer archives\ dbVar and\ DGVa.\ DGV then applies quality filters and merges overlapping variants.\

    \

    \ For data sets where the variation calls are reported at a\ sample-by-sample level, DGV merges calls with similar boundaries\ across the sample\ set. Only variants of the same type (i.e. CNVs, Indels, inversions)\ are merged, and gains and losses are merged separately.\ Sample level calls that overlap by ≥ 70% are merged in this\ process.\

    \

    \ The initial criteria for the Gold Standard set require that a variant \ is found in at least two different studies and found in at least two different \ samples. After filtering out low-quality variants, the remaining variants are \ clustered according to 50% minimum overlap, and then merged into a single \ record. Gains and losses are merged separately.

    \

    \ The highest ranking variant in the cluster defines the inner box, while the \ outer lines define the maximum possible start and stop coordinates of the CNV. \ In this way, the inner box forms a high-confidence CNV location and the \ thin connecting lines indicate confidence intervals for the location of CNV.

    \ \

    Data Access

    \

    \ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset. The genome annotation is stored in a bigBed\ file that can be downloaded from the\ download server.\ The exact filenames can be found in the track configuration file. Annotations can be converted to\ ASCII text by our tool bigBedToBed which can be compiled from the source code or\ downloaded as a precompiled binary for your system. Instructions for downloading source code and\ binaries can be found\ here. The tool can\ also be used to obtain only features within a given range, for example:

    \ \ 
    \
bigBedToBed https://hgdownload.soe.ucsc.edu/gbdb/hg38/dgv/dgvMerged.bb  -chrom=chr6 -start=0 -end=1000000 stdout\
    \ \

    Credits

    \

    \ Thanks to the Database of Genomic Variants for providing these data.\ In citing the Database of Genomic Variants please refer to MacDonald\ et al.\

    \ \

    References

    \

    \ Iafrate AJ, Feuk L, Rivera MN, Listewnik ML, Donahoe PK, Qi Y, Scherer SW, Lee C.\ \ Detection of large-scale variation in the human genome.\ Nat Genet. 2004 Sep;36(9):949-51.\ PMID: 15286789\

    \ \

    \ MacDonald JR, Ziman R, Yuen RK, Feuk L, Scherer SW.\ \ The Database of Genomic Variants: a curated collection of structural variation in the human\ genome.\ Nucleic Acids Res. 2014 Jan;42(Database issue):D986-92.\ PMID: 24174537; PMC: PMC3965079\

    \ \

    \ Zhang J, Feuk L, Duggan GE, Khaja R, Scherer SW.\ \ Development of bioinformatics resources for display and analysis of copy number and other structural\ variants in the human genome.\ Cytogenet Genome Res. 2006;115(3-4):205-14.\ PMID: 17124402\

    \ \ varRep 1 compositeTrack on\ coriellUrlBase http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=\ dataVersion 2020-02-25\ exonArrows off\ exonNumbers off\ group varRep\ itemRgb on\ longLabel Database of Genomic Variants: Structural Variation (CNV, Inversion, In/del)\ noScoreFilter .\ shortLabel DGV Struct Var\ track dgvPlus\ type bed 9 +\ url http://dgv.tcag.ca/dgv/app/variant?id=$$&ref=$D\ urlLabel DGV Browser and Report:\ visibility hide\ dosageSensitivity Dosage Sensitivity bigBed 9 + 2 pHaplo and pTriplo dosage sensitivity map from Collins et al 2022 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ This container track represents dosage sensitivity map data from Collins et al 2022. There are\ two tracks, one corresponding to the probability of haploinsufficiency (pHaplo) and \ one to the probability of triplosensitivity (pTriplo).

    \

    \ Rare copy-number variants (rCNVs) include deletions and duplications that occur \ infrequently in the global human population and can confer substantial risk for \ disease. Collins et al aimed to quantify the properties of haploinsufficiency (i.e., \ deletion intolerance) and triplosensitivity (i.e., duplication intolerance) throughout \ the human genome by analyzing rCNVs from nearly one million individuals to construct a \ genome-wide catalog of dosage sensitivity across 54 disorders, which defined 163 dosage \ sensitive segments associated with at least one disorder. These segments were typically \ gene-dense and often harbored dominant dosage sensitive driver genes. An ensemble \ machine learning model was built to predict dosage sensitivity probabilities (pHaplo & \ pTriplo) for all autosomal genes, which identified 2,987 haploinsufficient and 1,559 \ triplosensitive genes, including 648 that were uniquely triplosensitive.\

    \ \

    Display Conventions and Configuration

    \ \

    \ Each of the tracks is displayed with a distinct item (bed track) covering the entire gene locus wherever \ a score was available. Clicking on an item provides a link to DECIPHER which contains the sensitivity scores as well as\ additional information. Mousing over the items will display the gene symbol, the ESNG ID for that gene, \ and the respective sensitivity score for the track rounded to two decimal places. Filters are \ also available to specify specific score thresholds to display for each of the tracks.

    \ \

    Coloring and Interpretation

    \ \

    \

    \ Each of the tracks is colored based on standardized cutoffs for pHaplo and pTriplo as described by the\ authors:

    \

    \ pHaplo scores ≥0.86 indicate that the average effect sizes of deletions are as strong as \ the loss-of-function of genes known to be constrained against protein truncating variants (average OR≥2.7)\ (Karczewski et al., 2020). \ pHaplo scores ≥0.55 indicate an odds ratio ≥2.

    \

    \ pTriplo scores ≥0.94 indicate that the average effect sizes of deletions are as strong as\ the loss-of-function of genes known to be constrained against protein truncating variants (average OR≥2.7)\ (Karczewski et al., 2020).\ pHaplo scores ≥0.68 indicate an odds ratio ≥2.

    \

    \ Applying these cutoffs defined 2,987 haploinsufficient (pHaplo≥0.86) and 1,559\ triplosensitive (pTriplo≥0.94) genes with rCNV effect sizes comparable to loss-of-function\ of gold-standard PTV-constrained genes.

    \

    \

    See below for a summary of the color scheme:

    \ \
      \
    • Dark red items - pHaplo ≥ 0.86
      • \
    • Bright red items - pHaplo < 0.86
      • \
    • Dark blue items - pTriplo ≥ 0.94
      • \
    • Bright blue items - pTriplo < 0.94
      • \
    \ \

    Methods

    \ \

    \ The data were downloaded from Zenodo which consisted of a 3-column file with\ gene symbols, pHaplo, and pTriplo scores. Since the data were created using\ GENCODEv19 models, the hg19 data was mapped using those coordinates by picking the earliest\ transcription start site of all of the respective gene transcripts and the furthest \ transcription end site. This leads to some gene boundaries that are not representative of a real\ transcript, but since the data are for gene loci annotations this maximum coverage was used.\ Finally, both scores were rounded to two decimal points for easier interpretation.

    \

    \ For hg38, we attempted to use updated gene positions using a few different datasets since \ gene symbols have been updated many times since GENCODEv19. A summary of the workflow\ can be seen below, with each subsequent step being used only for genes where mapping failed:

    \
      \
    1. Gene symbols were mapped using MANE1.0. < 2000 items failed mapping here.
      2. \
    2. Mapping with GENCODEv45 was attempted.
      3. \
    3. Mapping with GENCODEv20 was attempted. At this point, 448 items were not mapped.
      4. \
    4. Finally, any missing items were lifted using the hg19 track. 19/448 items failed\ mapping due to their regions having been split from hg19 to hg38.
    \ \

    \ In summary, the hg19 track was mapped using the original GENCODEv19 mappings, and a series\ of steps were taken to map the hg38 gene symbols with updated coordinates. 19/18641 items\ could not be mapped and are missing from the hg38 tracks.

    \

    \ The complete \ makeDoc can be found online. This includes all of the track creation steps.

    \ \

    Data Access

    \

    \ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\

    \ \

    \ For automated download and analysis, the genome annotation is stored at UCSC in bigBed\ files that can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tool \ bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

    \ bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/bbi/dosageSensitivityCollins2022/pHaploDosageSensitivity.bb stdout\
    \

    \ \

    \ Please refer to our\ Data Access FAQ\ for more information.\

    \ \

    Credits

    \ \

    \ Thanks to DECIPHER for their support and assistance with the data. We would also like to \ thank Anna Benet-Pagès for suggesting and assisting in track development and interpretation.\

    \ \

    References

    \ \

    \ Collins RL, Glessner JT, Porcu E, Lepamets M, Brandon R, Lauricella C, Han L, Morley T, Niestroj LM,\ Ulirsch J et al.\ \ A cross-disorder dosage sensitivity map of the human genome.\ Cell. 2022 Aug 4;185(16):3041-3055.e25.\ PMID: 35917817; PMC: PMC9742861\

    \ phenDis 1 compositeTrack on\ group phenDis\ html dosageSensitivityCollins2022\ itemRgb on\ longLabel pHaplo and pTriplo dosage sensitivity map from Collins et al 2022\ noParentConfig on\ shortLabel Dosage Sensitivity\ track dosageSensitivity\ type bigBed 9 + 2\ visibility hide\ cons470wayViewphastcons Element Conservation (phastCons) bed 4 Multiz Alignment & Conservation (470 mammals) 0 100 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Multiz Alignment & Conservation (470 mammals)\ parent cons470way\ shortLabel Element Conservation (phastCons)\ track cons470wayViewphastcons\ view phastcons\ visibility hide\ epdNew EPDnew Promoters bigBed 8 Promoters from EPDnew 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ These tracks represent the experimentally validated promoters generated by \ the Eukaryotic Promoter Database.\

    \ \

    Display Conventions and Configuration

    \ \

    \ Each item in the track is a representation of the promoter sequence identified by EPD. The\ "thin" part of the element represents the 49 bp upstream of the annotated transcription\ start site (TSS) whereas the "thick" part represents the TSS plus 10 bp downstream. The\ relative position of the thick and thin parts define the orientation of the promoter.

    \

    \ Note that the EPD team has created a public track hub containing\ promoter and supporting annotations for human, mouse, and other vertebrate and model organism\ genomes.

    \ \

    Methods

    \

    \ Briefly, gene transcript coordinates were obtained from multiple sources (HGNC, GENCODE, Ensembl,\ RefSeq) and validated using data from CAGE and RAMPAGE experimental studies obtained from FANTOM 5,\ UCSC, and ENCODE. Peak calling, clustering and filtering based on relative expression were applied\ to identify the most expressed promoters and those present in the largest number of samples.

    \

    \ For the methodology and principles used by EPD to predict TSSs, refer to Dreos et al.\ (2013) in the References section below. A more detailed description of how this data was\ generated can be found at the following links:\ \

    \

    \ \

    Credits

    \ \

    \ Data was generated by the EPD team at the \ Swiss Institute of Bioinformatics. \ For inquiries, contact the EPD team using this on-line form \ or email \ \ philipp.\ bucher@epfl.\ ch\ \ .\

    \ \

    References

    \ \

    \ Dreos R, Ambrosini G, Perier RC, Bucher P.\ \ EPD and EPDnew, high-quality promoter resources in the\ next-generation sequencing era. Nucleic Acids\ Res. 2013 Jan 1;41(D1):D157-64. PMID: 23193273.\

    \ \ expression 1 bedNameLabel Promoter ID\ compositeTrack on\ exonArrows on\ group expression\ html ../../epdNewPromoter\ longLabel Promoters from EPDnew\ shortLabel EPDnew Promoters\ track epdNew\ type bigBed 8\ urlLabel EPDnew link:\ visibility hide\ exomeProbesets Exome Probesets bigBed Exome Capture Probesets and Targeted Region 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This set of tracks shows the genomic positions of probes and targets from a full \ suite of in-solution-capture target enrichment exome kits for Next Generation Sequencing (NGS)\ applications. Also known as exome sequencing or whole exome sequencing (WES), \ this technique allows high-throughput parallel sequencing of all exons (e.g., coding regions of genes \ which affect protein function), constituting about 1% of the human genome, or approximately 30 \ million base pairs.\

    \

    \ The tracks are intended to show the major differences in target genomic regions between the \ different exome capture kits from the major players in the NGS sequencing market:\ Illumina Inc., \ Roche NimbleGen Inc., \ Agilent Technologies Inc.,\ MGI Tech,\ Twist Bioscience, and\ Integrated DNA Technologies Inc..\

    \ \

    Display Conventions and Configuration

    \ \

    \ Items are shaded according to manufacturing company:\

      \
    • IDT (Integrated DNA Technologies)
      • \
    • Twist Biosciences
      • \
    • MGI Tech (Beijing Genomics Institute)
      • \
    • Roche NimbleGen
      • \
    • Agilent Technologies
      • \
    • Illumina
      • \
    \

    \ \

    \ Tracks labeled as Probes (P) indicate the footprint of the oligonucleotide probes\ mapped to the human genome. This is the technically relevant targeted region by the assay. However, \ the sequenced region will be bigger than this since flanking sequences are sequenced as well. \ Tracks labeled as Target Regions (T) indicate the genomic regions targeted by the\ assay. This is the biologically relevant target region. Not all targeted regions\ will necessarily be sequenced perfectly; there might be some capture bias at certain locations.\ The Target\ Regions are those normally used for coverage analysis. \

    \ \

    Note that most exome probesets are available on hg19 only. If you are working with hg38 and cannot find\ a particular probeset there, try to go to hg19, configure the same track, and\ see if it exists there. If you cannot find an array, do not hesitate to send us\ an email with the name of the manufacturer website with the probe file. If\ an array is available on hg19 but not on hg38 and you need it for your work, we\ can lift the locations. Our mailing list can be reached at genome@soe.ucsc.edu.\

    \ \

    Methods

    \ \

    \ The capture of the genomic regions of interest using in-solution capture, is achieved \ through the hybridization of a set of probes (oligonucleotides) with a sample of fragmented genomic \ DNA in a solution environment. The probes hybridize selectively to the genomic regions of interest \ which, after a process of exclusion of the non-selective DNA material, can be pulled down and \ sequenced, enabling selective DNA sequencing of the genomic regions of interest (e.g., exons).\ In-solution capture sequencing is a sensitive method to detect single nucleotide variants, \ insertions and deletions, and copy number variations.\

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    KitTargeted RegionDatabases Used for DesignYear of Release
    IDT - xGen Exome Research Panel V1.039 MbCoding sequences from RefSeq (19,396 genes)2015
    IDT - xGen Exome Research Panel V2.034 MbCoding sequences from RefSeq 109 (19,433 genes)2020
    Twist - RefSeq Exome Panel3.6 MbCurated subset of protein coding genes from CCDSN/A
    Twist - Core Exome Panel33 MbProtein coding genes from CCDSN/A
    Twist - Comprehensive Exome Panel36.8 MbProtein coding genes from RefSeq, CCDS, and GENCODE 2020
    Twist - Exome Panel 2.036.4 MbProtein coding genes from RefSeq, CCDS, and GENCODE 2021
    MGI - Easy Exome Capture V459 MbCCDS, GENCODE, RefSeq, and miRBaseN/A
    MGI - Easy Exome Capture V569 MbCCDS, GENCODE, RefSeq, miRBase, and MGI Clinical DatabaseN/A
    Agilent - SureSelect Clinical Research Exome54 MbDisease-associated regions from OMIM, HGMD, and ClinVar2014
    Agilent - SureSelect Clinical Research Exome V263.7 MbDisease-associated regions from OMIM, HGMD, ClinVar, and ACMG2017
    Agilent - SureSelect Focused Exome12 MbDisease-associated regions from HGMD, OMIM and ClinVar2016
    Agilent - SureSelect All Exon V451 MbCoding regions from CCDS, RefSeq, and GENCODE v6, miRBase v17, TCGA v6, and UCSC known genes2011
    Agilent - SureSelect All Exon V4 + UTRs71 MbCoding regions and 5' and 3' UTR sequences from CCDS, RefSeq, and GENCODE v6, regions from miRBase v17, TCGA v6, and UCSC known genes2011
    Agilent - SureSelect All Exon V5 50 MbCoding regions from Refseq, GENCODE, UCSC, TCGA, CCDS, and miRBase (21.522 genes)2012
    Agilent - SureSelect All Exon V5 + UTRs74 MbCoding regions and 5' and 3' UTR sequences from Refseq, GENCODE, UCSC, TCGA, CCDS, and miRBase (21.522 genes)2012
    Agilent - SureSelect All Exon V6 r260 MbCoding regions from RefSeq, CCDS, GENCODE, HGMD, and OMIM2016
    Agilent - SureSelect All Exon V6 + COSMIC r266 MbCoding regions from RefSeq, CCDS, GENCODE, HGMD, and OMIM, and targets from both TCGA and COSMIC2016
    Agilent - SureSelect All Exon V6 + UTR r275 MbCoding regions and 5' and 3' UTR sequences from RefSeq, GENCODE, CCDS, and UCSC known genes,and miRNAs and lncRNA sequences2016
    Agilent - SureSelect All Exon V735.7 MbCoding regions from RefSeq, CCDS, GENCODE, and UCSC known genes2018
    Roche - KAPA HyperExome43Mb Coding regions from CCDS, RefSeq, Ensembl, GENCODE,and variants from ClinVar2020
    Roche - SeqCap EZ Exome V364 MbCoding regions from RefSeq RefGene CDS, CCDS, and miRBase v14 databases, plus coverage of 97% Vega, 97% Gencode, and 99% Ensembl2018
    Roche - SeqCap EZ Exome V3 + UTR92 MbCoding sequences from RefSeq RefGene, CCDS, and miRBase v14, plus coverage of 97% Vega, 97% Gencode, and 99% Ensembl and UTRs from RefSeq RefGene table from UCSC GRCh37/hg19 March 2012 and Ensembl (GRCh37 v64)2018
    Roche - SeqCap EZ MedExome47 MbCoding sequences from CCDS 17, RefSeq, Ensembl 76, VEGA 56, GENCODE 20, miRBase 21, and disease-associated regions from GeneTests, ClinVar, and based on customer input2014
    Roche - SeqCap EZ MedExome + Mito47 MbCoding sequences and mitochondrial genes from CCDS 17, RefSeq, Ensembl 76, VEGA 56, GENCODE 20 and miRBase 21, disease-associated regions from GeneTests, ClinVar, and based on customer input2014
    Illumina - Nextera DNA Exome V1.245 MbCoding regions from RefSeq, CCDS, Ensembl, and GENCODE v192015
    Illumina - Nextera Rapid Capture Exome37 Mb212,158 targeted exonic regions with start and stop chromosome locations in GRCh37/hg192013
    Illumina - Nextera Rapid Capture Exome V1.237 MbCoding regions from RefSeq, CCDS, Ensembl, and GENCODE v122014
    Illumina - Nextera Rapid Capture Expanded Exome66 MbCoding regions from RefSeq, CCDS, Ensembl, and GENCODE v122013
    Illumina - TruSeq DNA Exome V1.245 MbCoding regions from RefSeq, CCDS, and Ensembl2017
    Illumina - TruSeq Rapid Exome V1.245 MbCoding regions from RefSeq, CCDS, Ensembl, and GENECODE v192015
    Illumina - TruSight ONE V1.112 MbCoding regions of 6700 genes from HGMD, OMIM, and GeneTest2017
    Illumina - TruSight Exome7 MbDisease-causing mutations as curated by HGMD2017
    Illumina - AmpliSeq Exome PanelN/ACCDS coding regions2019
    \ \

    Data Access

    \

    \ The raw data can be explored interactively with the Table Browser\ or cross-referenced with Data Integrator. The data can be\ accessed from scripts through our API, with track names\ found in the Table Schema page for each subtrack after "Primary Table:".\ \

    \ For downloading the data, the annotations are stored in bigBed files that\ can be accessed at\ \ our download directory. \ Regional or the whole genome text annotations can be obtained using our utility \ bigBedToBed. Instructions for downloading utilities can be found\ here.\

    \ \

    Credits

    \ \

    \ Thanks to Illumina (U.S.), Roche NimbleGen, Inc. (U.S.), Agilent Technologies (U.S.), MGI Tech\ (Beijing Genomics Institute, China), Twist Bioscience (U.S.), and Integrated DNA Technologies (IDT),\ Inc. (U.S.) for making these data available and to Tiana Pereira, Pranav Muthuraman, Began Nguy\ and Anna Benet-Pages for enginering these tracks.\

    \ \ \ \ map 1 allButtonPair on\ compositeTrack on\ group map\ longLabel Exome Capture Probesets and Targeted Region\ shortLabel Exome Probesets\ track exomeProbesets\ type bigBed\ visibility hide\ fantom5 FANTOM5 FANTOM5: Mapped transcription start sites (TSS) and their usage 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\

    \ \

    Display Conventions and Configuration

    \ \

    Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\

    \ \

    Methods

    \

    Protocol

    \

    Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE (Kanamori-Katyama\ et al. 2011).\

      \
    • hCAGE
      • \
    • LQhCAGE
      • \
    \

    \

    Samples

    \

    Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\

      \
    • Primary cell
      • \
    • Tissue
      • \
    • Cell Line
      • \
    • Time course
      • \
    • Fractionation
      • \
    \

    \

    TSS peaks

    \

    TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as a\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They are\ named "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or "p@CHROM:START..END,STRAND"\ otherwise. The summary tracks consist of the TSS (CAGE) peaks and summary profiles of TSS\ activities (total and maximum values). The summary track consists of the following tracks.\

      \
    • TSS (CAGE) peaks\
        \
      • the robust peaks
        • \
      \
      • \
    • TSS summary profiles\
        \
      • Total counts and TPM (tags per million) in all the samples
        • \
      • Maximum counts and TPM among the samples
        • \
      \
      • \
    \ \

    TSS activity

    \

    \ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as TPM (tags per million).\

    \ \
    \
    Categories of individual samples
    \
    - Cell Line hCAGE
    \
    - Cell Line LQhCAGE
    \
    - fractionation hCAGE
    \
    - Primary cell hCAGE
    \
    - Primary cell LQhCAGE
    \
    - Time course hCAGE
    \
    - Tissue hCAGE
    \
    \ \

    Data Access

    \

    \ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

    \ \

    \ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.

    \ \

    Credits

    \ \

    \ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, the Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.

    \ \

    References

    \

    \ FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\ Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\ \ A promoter-level mammalian expression atlas.\ Nature. 2014 Mar 27;507(7493):462-70.\ PMID: 24670764; PMC: PMC4529748\

    \ \

    \ Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\ N, Daub CO et al.\ \ Unamplified cap analysis of gene expression on a single-molecule sequencer.\ Genome Res. 2011 Jul;21(7):1150-9.\ PMID: 21596820; PMC: PMC3129257\

    \ \

    \ Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\ Ishikawa-Kato S et al.\ \ Gateways to the FANTOM5 promoter level mammalian expression atlas.\ Genome Biol. 2015 Jan 5;16(1):22.\ PMID: 25723102; PMC: PMC4310165\

    \ regulation 0 group regulation\ html fantom5.html\ longLabel FANTOM5: Mapped transcription start sites (TSS) and their usage\ pennantIcon New red ../goldenPath/newsarch.html#071923 "Released July 19, 2023"\ shortLabel FANTOM5\ superTrack on\ track fantom5\ visibility hide\ fetalGeneAtlasAssay Fetal Assay bigBarChart Fetal Gene Atlas binned by assay (cell/nucleus) from Cao et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=fetal-gene-atlas+all&gene=$$

    Description

    \

    \ This group of tracks shows data from \ A human cell atlas of fetal gene expression. This is a collection of\ single cell and single nucleus combinatorial indexing-based RNA-seq data covering 4 million\ cells from 15 organs obtained during mid-gestation. The cells were sequenced in\ a highly multiplexed fashion and then clustered with annotations as described\ in Cao et al., 2020.

    \ \

    \ The Fetal Cells subtrack contains the \ data organized by cell type, with RNA signals from all cells of a given type pooled \ and averaged into one bar for each cell type. The \ Fetal Lineage subtrack shows \ similar data, but with the cell types subdivided more finely and by organ. Additional \ bar chart subtracks pool the cell by other characteristics such as by sex \ (Fetal Sex), assay \ (FetalAssay), donor \ (Fetal Donor ID), experiment \ (Fetal Exp), organ \ (Fetal Organ), and reverse transcription group \ (Fetal RT Group).

    \ \

    \ Please see descartes.brotmanbaty.org for\ further interactive displays and additional data.

    \ \

    Display Conventions and Configuration

    \

    \ The cell types are colored by which class they belong to according to the following table.\ The coloring algorithm allows cells that show some blended characteristics to show blended\ colors so there will be some color variation within a class. The colors will be purest in\ the Fetal Cells subtrack, where the bars \ represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.\ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    adipose
    fibroblast
    immune
    muscle
    hepatocyte
    trophoblast
    secretory
    ciliated
    epithelial
    endothelial
    glia
    \ \

    Methods

    \

    \ Three-level single-cell combinatorial indexing (sci-RNAseq3) as described in\ Cao et al., 2020 was used on 121 samples from 28 fetuses estimated 72\ to 129 days post-conception. This included samples from 15 organs. and\ resulted in RNA profiles for 4 million cells. The samples were flash-frozen for\ majority of the experiments and then nuclei extracted for sequencing. Samples\ from tissues from the kidney and digestive system were fixed after\ disassociation to deactivate endogenous RNases and proteases.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser. The UCSC command line utility matrixClusterColumns,\ matrixToBarChart, and bedToBigBed were used to transform these into a bar chart\ format bigBed file that can be visualized. The coloring was done by defining\ colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types.\ The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credits

    \

    Thanks to the many authors who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R,\ Zhang F et al.\ \ A human cell atlas of fetal gene expression.\ Science. 2020 Nov 13;370(6518).\ PMID: 33184181; PMC: PMC7780123\

    \

    \ Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L,\ Steemers FJ et al.\ \ The single-cell transcriptional landscape of mammalian organogenesis.\ Nature. 2019 Feb;566(7745):496-502.\ PMID: 30787437; PMC: PMC6434952\

    \ \ \ \ \ singleCell 1 barChartBars Cell Nuclei\ barChartColors #4c758b #e5b909\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/fetalGeneAtlas/Assay.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/fetalGeneAtlas/Assay.bb\ defaultLabelFields name2\ html fetalGeneAtlas\ labelFields name,name2\ longLabel Fetal Gene Atlas binned by assay (cell/nucleus) from Cao et al 2020\ parent fetalGeneAtlas\ shortLabel Fetal Assay\ track fetalGeneAtlasAssay\ transformFunc NONE\ url https://cells.ucsc.edu/?ds=fetal-gene-atlas+all&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ fetalGeneAtlasCellType Fetal Cells bigBarChart Fetal Gene Atlas binned by cell type from Cao et al 2020 3 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=fetal-gene-atlas+all&gene=$$

    Description

    \

    \ This group of tracks shows data from \ A human cell atlas of fetal gene expression. This is a collection of\ single cell and single nucleus combinatorial indexing-based RNA-seq data covering 4 million\ cells from 15 organs obtained during mid-gestation. The cells were sequenced in\ a highly multiplexed fashion and then clustered with annotations as described\ in Cao et al., 2020.

    \ \

    \ The Fetal Cells subtrack contains the \ data organized by cell type, with RNA signals from all cells of a given type pooled \ and averaged into one bar for each cell type. The \ Fetal Lineage subtrack shows \ similar data, but with the cell types subdivided more finely and by organ. Additional \ bar chart subtracks pool the cell by other characteristics such as by sex \ (Fetal Sex), assay \ (FetalAssay), donor \ (Fetal Donor ID), experiment \ (Fetal Exp), organ \ (Fetal Organ), and reverse transcription group \ (Fetal RT Group).

    \ \

    \ Please see descartes.brotmanbaty.org for\ further interactive displays and additional data.

    \ \

    Display Conventions and Configuration

    \

    \ The cell types are colored by which class they belong to according to the following table.\ The coloring algorithm allows cells that show some blended characteristics to show blended\ colors so there will be some color variation within a class. The colors will be purest in\ the Fetal Cells subtrack, where the bars \ represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.\ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    adipose
    fibroblast
    immune
    muscle
    hepatocyte
    trophoblast
    secretory
    ciliated
    epithelial
    endothelial
    glia
    \ \

    Methods

    \

    \ Three-level single-cell combinatorial indexing (sci-RNAseq3) as described in\ Cao et al., 2020 was used on 121 samples from 28 fetuses estimated 72\ to 129 days post-conception. This included samples from 15 organs. and\ resulted in RNA profiles for 4 million cells. The samples were flash-frozen for\ majority of the experiments and then nuclei extracted for sequencing. Samples\ from tissues from the kidney and digestive system were fixed after\ disassociation to deactivate endogenous RNases and proteases.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser. The UCSC command line utility matrixClusterColumns,\ matrixToBarChart, and bedToBigBed were used to transform these into a bar chart\ format bigBed file that can be visualized. The coloring was done by defining\ colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types.\ The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credits

    \

    Thanks to the many authors who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R,\ Zhang F et al.\ \ A human cell atlas of fetal gene expression.\ Science. 2020 Nov 13;370(6518).\ PMID: 33184181; PMC: PMC7780123\

    \

    \ Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L,\ Steemers FJ et al.\ \ The single-cell transcriptional landscape of mammalian organogenesis.\ Nature. 2019 Feb;566(7745):496-502.\ PMID: 30787437; PMC: PMC6434952\

    \ \ \ \ \ singleCell 1 barChartBars mixed_AFP+_ALB+_cell acinar_cell adrenocortical_cell amacrine_cell antigen_presenting_cell astrocyte bipolar_neuron bronchiolar/alveolar_epithelial_cell pancreas_CCL19+_CCL21+_cell heart_CLC+_IL5RA+_cell mixed_CSH1+_CSH2+_cell cardiomyocyte chromaffin_cell ciliated_epithelial_cell corneal/conjunctival_epithelial_cell ductal_cell heart_ELF3+_AGBL2+_cell enteric_nervous_system_(ENS)_glial_cell enteric_nervous_system_(ENS)_neuron endocardial_cell epicardial_adipose_cell erythroblast excitatory_neuron extravillous_trophoblast ganglion_cell goblet_cell granule_neuron hematopoietic_stem_cell hepatoblast horizontal_cell placenta_IGFBP1+_DKK1+_cell inhibitory_interneuron inhibitory_neuron intestinal_epithelial_cell islet_endocrine_cell lens_fibre_cell limbic_system_neuron lymphatic_endothelial_cell lymphoid_cell stomach_MUC13+_DMBT1+_cell megakaryocyte mesangial_cell mesothelial_cell metanephric_cell microglial_cell myeloid_cell neuroendocrine_cell oligodendrocyte placenta_PAEP+_MECOM+_cell eye_PDE11A+_FAM19A2+_cell stomach_PDE1C+_ACSM3+_cell parietal_and_chief_cell photoreceptor_cell Purkinje_neuron retinal_pigment_cell retinal_progenitor/Muller_glial_cell heart_SATB2+_LRRC7+_cell brain_SKOR2+_NPSR1+_cell brain_SLC24A4+_PEX5L+_cell adrenal_gland_SLC26A4+_PAEP+_cell spleen_STC2+_TLX1+_cell satellite_cell Schwann_cell skeletal_muscle_cell smooth_muscle_cell squamous_epithelial_cell stellate_cell stromal_cell sympathoblasts syncytiotrophoblast_and_villous_cytotrophoblast thymic_epithelial_cell thymocyte trophoblast_giant_cell unipolar_brush_cell ureteric_bud_cell vascular_endothelial_cell visceral_neuron\ barChartColors #c75cc6 #3259c7 #7d8952 #d3ac19 #de201f #adb119 #be9c2d #577881 #a4a096 #b787ac #9275da #af1ea8 #aa973d #477f92 #65b5cb #2f5cc6 #c471c0 #80c709 #cba81f #489338 #fe8839 #8a7352 #e1b60c #5f37bb #ddb311 #305cc5 #deb410 #ad4e3b #b001af #b99b2f #7c7062 #deb40f #e7ba08 #536a95 #3f61b4 #ad9f9a #e1b60d #0aba08 #d02b29 #4766a4 #8b6651 #82953b #d07f49 #8c9840 #d92422 #e31b1b #6c7676 #bca424 #756d72 #b39635 #999eaa #2b59cd #ae9537 #dcb212 #88775c #b09f2b #dbc46b #dcb212 #dab014 #c9c6b4 #618237 #8d656b #80c60a #b80db6 #8d5675 #2889a7 #838546 #809836 #958951 #79785f #87a9b4 #b5443b #5425d7 #d7b015 #507093 #12b50d #c9a721\ barChartFacets organ,cell_class,cell_type\ barChartLimit 3\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/fetalGeneAtlas/cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/fetalGeneAtlas/cell_type.bb\ defaultLabelFields name2\ html fetalGeneAtlas\ labelFields name,name2\ longLabel Fetal Gene Atlas binned by cell type from Cao et al 2020\ parent fetalGeneAtlas\ shortLabel Fetal Cells\ track fetalGeneAtlasCellType\ transformFunc NONE\ url https://cells.ucsc.edu/?ds=fetal-gene-atlas+all&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility pack\ fetalGeneAtlasDonor Fetal Donor ID bigBarChart Fetal Gene Atlas binned by donor ID from Cao et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=fetal-gene-atlas+all&gene=$$

    Description

    \

    \ This group of tracks shows data from \ A human cell atlas of fetal gene expression. This is a collection of\ single cell and single nucleus combinatorial indexing-based RNA-seq data covering 4 million\ cells from 15 organs obtained during mid-gestation. The cells were sequenced in\ a highly multiplexed fashion and then clustered with annotations as described\ in Cao et al., 2020.

    \ \

    \ The Fetal Cells subtrack contains the \ data organized by cell type, with RNA signals from all cells of a given type pooled \ and averaged into one bar for each cell type. The \ Fetal Lineage subtrack shows \ similar data, but with the cell types subdivided more finely and by organ. Additional \ bar chart subtracks pool the cell by other characteristics such as by sex \ (Fetal Sex), assay \ (FetalAssay), donor \ (Fetal Donor ID), experiment \ (Fetal Exp), organ \ (Fetal Organ), and reverse transcription group \ (Fetal RT Group).

    \ \

    \ Please see descartes.brotmanbaty.org for\ further interactive displays and additional data.

    \ \

    Display Conventions and Configuration

    \

    \ The cell types are colored by which class they belong to according to the following table.\ The coloring algorithm allows cells that show some blended characteristics to show blended\ colors so there will be some color variation within a class. The colors will be purest in\ the Fetal Cells subtrack, where the bars \ represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.\ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    adipose
    fibroblast
    immune
    muscle
    hepatocyte
    trophoblast
    secretory
    ciliated
    epithelial
    endothelial
    glia
    \ \

    Methods

    \

    \ Three-level single-cell combinatorial indexing (sci-RNAseq3) as described in\ Cao et al., 2020 was used on 121 samples from 28 fetuses estimated 72\ to 129 days post-conception. This included samples from 15 organs. and\ resulted in RNA profiles for 4 million cells. The samples were flash-frozen for\ majority of the experiments and then nuclei extracted for sequencing. Samples\ from tissues from the kidney and digestive system were fixed after\ disassociation to deactivate endogenous RNases and proteases.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser. The UCSC command line utility matrixClusterColumns,\ matrixToBarChart, and bedToBigBed were used to transform these into a bar chart\ format bigBed file that can be visualized. The coloring was done by defining\ colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types.\ The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credits

    \

    Thanks to the many authors who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R,\ Zhang F et al.\ \ A human cell atlas of fetal gene expression.\ Science. 2020 Nov 13;370(6518).\ PMID: 33184181; PMC: PMC7780123\

    \

    \ Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L,\ Steemers FJ et al.\ \ The single-cell transcriptional landscape of mammalian organogenesis.\ Nature. 2019 Feb;566(7745):496-502.\ PMID: 30787437; PMC: PMC6434952\

    \ \ \ \ \ singleCell 1 barChartBars H26350 H26547 H27058 H27098 H27295 H27423 H27431 H27432 H27458 H27464 H27471 H27472 H27473 H27474 H27477 H27552 H27620 H27634 H27771 H27772 H27798 H27799 H27870 H27876 H27909 H27913 H27915 H27948\ barChartColors #647e66 #8a933b #e2b60c #92953b #ae20a5 #c8a91d #e5b909 #dfb40f #d6af15 #e3b80b #e3b80a #deb50e #a5199f #e6ba08 #e4b80a #9d9935 #cdaa1d #e6ba08 #859d34 #70904e #85973d #70835e #1a58dc #2359d2 #3f69a4 #779052 #64846d #557f72\ barChartLimit 3\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/fetalGeneAtlas/donor.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/fetalGeneAtlas/donor.bb\ defaultLabelFields name2\ html fetalGeneAtlas\ labelFields name,name2\ longLabel Fetal Gene Atlas binned by donor ID from Cao et al 2020\ parent fetalGeneAtlas\ shortLabel Fetal Donor ID\ track fetalGeneAtlasDonor\ transformFunc NONE\ url https://cells.ucsc.edu/?ds=fetal-gene-atlas+all&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ fetalGeneAtlasExperiment Fetal Exp bigBarChart Fetal Gene Atlas binned by experiment id from Cao et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=fetal-gene-atlas+all&gene=$$

    Description

    \

    \ This group of tracks shows data from \ A human cell atlas of fetal gene expression. This is a collection of\ single cell and single nucleus combinatorial indexing-based RNA-seq data covering 4 million\ cells from 15 organs obtained during mid-gestation. The cells were sequenced in\ a highly multiplexed fashion and then clustered with annotations as described\ in Cao et al., 2020.

    \ \

    \ The Fetal Cells subtrack contains the \ data organized by cell type, with RNA signals from all cells of a given type pooled \ and averaged into one bar for each cell type. The \ Fetal Lineage subtrack shows \ similar data, but with the cell types subdivided more finely and by organ. Additional \ bar chart subtracks pool the cell by other characteristics such as by sex \ (Fetal Sex), assay \ (FetalAssay), donor \ (Fetal Donor ID), experiment \ (Fetal Exp), organ \ (Fetal Organ), and reverse transcription group \ (Fetal RT Group).

    \ \

    \ Please see descartes.brotmanbaty.org for\ further interactive displays and additional data.

    \ \

    Display Conventions and Configuration

    \

    \ The cell types are colored by which class they belong to according to the following table.\ The coloring algorithm allows cells that show some blended characteristics to show blended\ colors so there will be some color variation within a class. The colors will be purest in\ the Fetal Cells subtrack, where the bars \ represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.\ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    adipose
    fibroblast
    immune
    muscle
    hepatocyte
    trophoblast
    secretory
    ciliated
    epithelial
    endothelial
    glia
    \ \

    Methods

    \

    \ Three-level single-cell combinatorial indexing (sci-RNAseq3) as described in\ Cao et al., 2020 was used on 121 samples from 28 fetuses estimated 72\ to 129 days post-conception. This included samples from 15 organs. and\ resulted in RNA profiles for 4 million cells. The samples were flash-frozen for\ majority of the experiments and then nuclei extracted for sequencing. Samples\ from tissues from the kidney and digestive system were fixed after\ disassociation to deactivate endogenous RNases and proteases.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser. The UCSC command line utility matrixClusterColumns,\ matrixToBarChart, and bedToBigBed were used to transform these into a bar chart\ format bigBed file that can be visualized. The coloring was done by defining\ colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types.\ The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credits

    \

    Thanks to the many authors who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R,\ Zhang F et al.\ \ A human cell atlas of fetal gene expression.\ Science. 2020 Nov 13;370(6518).\ PMID: 33184181; PMC: PMC7780123\

    \

    \ Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L,\ Steemers FJ et al.\ \ The single-cell transcriptional landscape of mammalian organogenesis.\ Nature. 2019 Feb;566(7745):496-502.\ PMID: 30787437; PMC: PMC6434952\

    \ \ \ \ \ singleCell 1 barChartBars exp1 exp2 exp3 exp4 exp5 exp6 exp7\ barChartColors #c9ab1b #dfb50e #d0ae18 #d4b114 #e8bb07 #5e836a #406ea0\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/fetalGeneAtlas/Experiment_batch.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/fetalGeneAtlas/Experiment_batch.bb\ defaultLabelFields name2\ html fetalGeneAtlas\ labelFields name,name2\ longLabel Fetal Gene Atlas binned by experiment id from Cao et al 2020\ parent fetalGeneAtlas\ shortLabel Fetal Exp\ track fetalGeneAtlasExperiment\ transformFunc NONE\ url https://cells.ucsc.edu/?ds=fetal-gene-atlas+all&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ fetalGeneAtlas Fetal Gene Atlas bigBarChart Fetal Gene Atlas from Cao et al 2020 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This group of tracks shows data from \ A human cell atlas of fetal gene expression. This is a collection of\ single cell and single nucleus combinatorial indexing-based RNA-seq data covering 4 million\ cells from 15 organs obtained during mid-gestation. The cells were sequenced in\ a highly multiplexed fashion and then clustered with annotations as described\ in Cao et al., 2020.

    \ \

    \ The Fetal Cells subtrack contains the \ data organized by cell type, with RNA signals from all cells of a given type pooled \ and averaged into one bar for each cell type. The \ Fetal Lineage subtrack shows \ similar data, but with the cell types subdivided more finely and by organ. Additional \ bar chart subtracks pool the cell by other characteristics such as by sex \ (Fetal Sex), assay \ (FetalAssay), donor \ (Fetal Donor ID), experiment \ (Fetal Exp), organ \ (Fetal Organ), and reverse transcription group \ (Fetal RT Group).

    \ \

    \ Please see descartes.brotmanbaty.org for\ further interactive displays and additional data.

    \ \

    Display Conventions and Configuration

    \

    \ The cell types are colored by which class they belong to according to the following table.\ The coloring algorithm allows cells that show some blended characteristics to show blended\ colors so there will be some color variation within a class. The colors will be purest in\ the Fetal Cells subtrack, where the bars \ represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.\ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    adipose
    fibroblast
    immune
    muscle
    hepatocyte
    trophoblast
    secretory
    ciliated
    epithelial
    endothelial
    glia
    \ \

    Methods

    \

    \ Three-level single-cell combinatorial indexing (sci-RNAseq3) as described in\ Cao et al., 2020 was used on 121 samples from 28 fetuses estimated 72\ to 129 days post-conception. This included samples from 15 organs. and\ resulted in RNA profiles for 4 million cells. The samples were flash-frozen for\ majority of the experiments and then nuclei extracted for sequencing. Samples\ from tissues from the kidney and digestive system were fixed after\ disassociation to deactivate endogenous RNases and proteases.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser. The UCSC command line utility matrixClusterColumns,\ matrixToBarChart, and bedToBigBed were used to transform these into a bar chart\ format bigBed file that can be visualized. The coloring was done by defining\ colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types.\ The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credits

    \

    Thanks to the many authors who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R,\ Zhang F et al.\ \ A human cell atlas of fetal gene expression.\ Science. 2020 Nov 13;370(6518).\ PMID: 33184181; PMC: PMC7780123\

    \

    \ Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L,\ Steemers FJ et al.\ \ The single-cell transcriptional landscape of mammalian organogenesis.\ Nature. 2019 Feb;566(7745):496-502.\ PMID: 30787437; PMC: PMC6434952\

    \ \ \ \ \ singleCell 1 group singleCell\ longLabel Fetal Gene Atlas from Cao et al 2020\ pennantIcon 19.jpg liftover.html "lifted from hg19"\ shortLabel Fetal Gene Atlas\ superTrack on\ track fetalGeneAtlas\ type bigBarChart\ visibility hide\ fetalGeneAtlasOrganCellLineage Fetal Lineage bigBarChart Fetal Gene Atlas binned by cell lineage and organ from Cao et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=fetal-gene-atlas+all&gene=$$

    Description

    \

    \ This group of tracks shows data from \ A human cell atlas of fetal gene expression. This is a collection of\ single cell and single nucleus combinatorial indexing-based RNA-seq data covering 4 million\ cells from 15 organs obtained during mid-gestation. The cells were sequenced in\ a highly multiplexed fashion and then clustered with annotations as described\ in Cao et al., 2020.

    \ \

    \ The Fetal Cells subtrack contains the \ data organized by cell type, with RNA signals from all cells of a given type pooled \ and averaged into one bar for each cell type. The \ Fetal Lineage subtrack shows \ similar data, but with the cell types subdivided more finely and by organ. Additional \ bar chart subtracks pool the cell by other characteristics such as by sex \ (Fetal Sex), assay \ (FetalAssay), donor \ (Fetal Donor ID), experiment \ (Fetal Exp), organ \ (Fetal Organ), and reverse transcription group \ (Fetal RT Group).

    \ \

    \ Please see descartes.brotmanbaty.org for\ further interactive displays and additional data.

    \ \

    Display Conventions and Configuration

    \

    \ The cell types are colored by which class they belong to according to the following table.\ The coloring algorithm allows cells that show some blended characteristics to show blended\ colors so there will be some color variation within a class. The colors will be purest in\ the Fetal Cells subtrack, where the bars \ represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.\ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    adipose
    fibroblast
    immune
    muscle
    hepatocyte
    trophoblast
    secretory
    ciliated
    epithelial
    endothelial
    glia
    \ \

    Methods

    \

    \ Three-level single-cell combinatorial indexing (sci-RNAseq3) as described in\ Cao et al., 2020 was used on 121 samples from 28 fetuses estimated 72\ to 129 days post-conception. This included samples from 15 organs. and\ resulted in RNA profiles for 4 million cells. The samples were flash-frozen for\ majority of the experiments and then nuclei extracted for sequencing. Samples\ from tissues from the kidney and digestive system were fixed after\ disassociation to deactivate endogenous RNases and proteases.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser. The UCSC command line utility matrixClusterColumns,\ matrixToBarChart, and bedToBigBed were used to transform these into a bar chart\ format bigBed file that can be visualized. The coloring was done by defining\ colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types.\ The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credits

    \

    Thanks to the many authors who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R,\ Zhang F et al.\ \ A human cell atlas of fetal gene expression.\ Science. 2020 Nov 13;370(6518).\ PMID: 33184181; PMC: PMC7780123\

    \

    \ Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L,\ Steemers FJ et al.\ \ The single-cell transcriptional landscape of mammalian organogenesis.\ Nature. 2019 Feb;566(7745):496-502.\ PMID: 30787437; PMC: PMC6434952\

    \ \ \ \ \ singleCell 1 barChartBars Adrenal-Adrenocortical_cells Adrenal-CSH1_CSH2_positive_cells Adrenal-Chromaffin_cells Adrenal-Erythroblasts Adrenal-Lymphoid_cells Adrenal-Megakaryocytes Adrenal-Myeloid_cells Adrenal-SLC26A4_PAEP_positive_cells Adrenal-Schwann_cells Adrenal-Stromal_cells Adrenal-Sympathoblasts Adrenal-Vascular_endothelial_cells Cerebellum-Astrocytes Cerebellum-Granule_neurons Cerebellum-Inhibitory_interneurons Cerebellum-Microglia Cerebellum-Oligodendrocytes Cerebellum-Purkinje_neurons Cerebellum-SLC24A4_PEX5L_positive_cells Cerebellum-Unipolar_brush_cells Cerebellum-Vascular_endothelial_cells Cerebrum-Astrocytes Cerebrum-Excitatory_neurons Cerebrum-Inhibitory_neurons Cerebrum-Limbic_system_neurons Cerebrum-Megakaryocytes Cerebrum-Microglia Cerebrum-Oligodendrocytes Cerebrum-SKOR2_NPSR1_positive_cells Cerebrum-Vascular_endothelial_cells Eye-Amacrine_cells Eye-Astrocytes Eye-Bipolar_cells Eye-Corneal_and_conjunctival_epithelial_cells Eye-Ganglion_cells Eye-Horizontal_cells Eye-Lens_fibre_cells Eye-Microglia Eye-PDE11A_FAM19A2_positive_cells Eye-Photoreceptor_cells Eye-Retinal_pigment_cells Eye-Retinal_progenitors_and_Muller_glia Eye-Skeletal_muscle_cells Eye-Smooth_muscle_cells Eye-Stromal_cells Eye-Vascular_endothelial_cells Heart-CLC_IL5RA_positive_cells Heart-Cardiomyocytes Heart-ELF3_AGBL2_positive_cells Heart-Endocardial_cells Heart-Epicardial_fat_cells Heart-Erythroblasts Heart-Lymphatic_endothelial_cells Heart-Lymphoid_cells Heart-Megakaryocytes Heart-Myeloid_cells Heart-SATB2_LRRC7_positive_cells Heart-Schwann_cells Heart-Smooth_muscle_cells Heart-Stromal_cells Heart-Vascular_endothelial_cells Heart-Visceral_neurons Intestine-Chromaffin_cells Intestine-ENS_glia Intestine-ENS_neurons Intestine-Erythroblasts Intestine-Intestinal_epithelial_cells Intestine-Lymphatic_endothelial_cells Intestine-Lymphoid_cells Intestine-Mesothelial_cells Intestine-Myeloid_cells Intestine-Smooth_muscle_cells Intestine-Stromal_cells Intestine-Vascular_endothelial_cells Kidney-Erythroblasts Kidney-Lymphoid_cells Kidney-Megakaryocytes Kidney-Mesangial_cells Kidney-Metanephric_cells Kidney-Myeloid_cells Kidney-Stromal_cells Kidney-Ureteric_bud_cells Kidney-Vascular_endothelial_cells Liver-Erythroblasts Liver-Hematopoietic_stem_cells Liver-Hepatoblasts Liver-Lymphoid_cells Liver-Megakaryocytes Liver-Mesothelial_cells Liver-Myeloid_cells Liver-Stellate_cells Liver-Vascular_endothelial_cells Lung-Bronchiolar_and_alveolar_epithelial_cells Lung-CSH1_CSH2_positive_cells Lung-Ciliated_epithelial_cells Lung-Lymphatic_endothelial_cells Lung-Lymphoid_cells Lung-Megakaryocytes Lung-Mesothelial_cells Lung-Myeloid_cells Lung-Neuroendocrine_cells Lung-Squamous_epithelial_cells Lung-Stromal_cells Lung-Vascular_endothelial_cells Lung-Visceral_neurons Muscle-Erythroblasts Muscle-Lymphatic_endothelial_cells Muscle-Lymphoid_cells Muscle-Megakaryocytes Muscle-Myeloid_cells Muscle-Satellite_cells Muscle-Schwann_cells Muscle-Skeletal_muscle_cells Muscle-Smooth_muscle_cells Muscle-Stromal_cells Muscle-Vascular_endothelial_cells Pancreas-Acinar_cells Pancreas-CCL19_CCL21_positive_cells Pancreas-Ductal_cells Pancreas-ENS_glia Pancreas-ENS_neurons Pancreas-Erythroblasts Pancreas-Islet_endocrine_cells Pancreas-Lymphatic_endothelial_cells Pancreas-Lymphoid_cells Pancreas-Mesothelial_cells Pancreas-Myeloid_cells Pancreas-Smooth_muscle_cells Pancreas-Stromal_cells Pancreas-Vascular_endothelial_cells Placenta-AFP_ALB_positive_cells Placenta-Extravillous_trophoblasts Placenta-IGFBP1_DKK1_positive_cells Placenta-Lymphoid_cells Placenta-Megakaryocytes Placenta-Myeloid_cells Placenta-PAEP_MECOM_positive_cells Placenta-Smooth_muscle_cells Placenta-Stromal_cells Placenta-Syncytiotrophoblasts_and_villous_cytotrophoblasts Placenta-Trophoblast_giant_cells Placenta-Vascular_endothelial_cells Spleen-AFP_ALB_positive_cells Spleen-Erythroblasts Spleen-Lymphoid_cells Spleen-Megakaryocytes Spleen-Mesothelial_cells Spleen-Myeloid_cells Spleen-STC2_TLX1_positive_cells Spleen-Stromal_cells Spleen-Vascular_endothelial_cells Stomach-Ciliated_epithelial_cells Stomach-ENS_glia Stomach-ENS_neurons Stomach-Erythroblasts Stomach-Goblet_cells Stomach-Lymphatic_endothelial_cells Stomach-Lymphoid_cells Stomach-MUC13_DMBT1_positive_cells Stomach-Mesothelial_cells Stomach-Myeloid_cells Stomach-Neuroendocrine_cells Stomach-PDE1C_ACSM3_positive_cells Stomach-Parietal_and_chief_cells Stomach-Squamous_epithelial_cells Stomach-Stromal_cells Stomach-Vascular_endothelial_cells Thymus-Antigen_presenting_cells Thymus-Stromal_cells Thymus-Thymic_epithelial_cells Thymus-Thymocytes Thymus-Vascular_endothelial_cells\ barChartColors #7d8952 #9478d5 #aa963d #826c5f #c03833 #856855 #d82423 #c9c6b4 #80c50c #72923c #958951 #22ab19 #abb219 #deb410 #deb40f #d82524 #b9a227 #dcb212 #dab014 #d7b015 #2fa323 #b5ac1e #e1b60c #e7ba08 #e1b60d #ddd4cb #d92423 #bea523 #dcb212 #2da521 #d3ac19 #bdbb78 #be9c2d #65b5cb #ddb311 #b99b2f #ad9f9a #e17170 #b39635 #ae9537 #88775c #b09f2b #c96ac4 #dad6cf #85844c #7bbf6f #b787ac #af1ea8 #c471c0 #489338 #fe8839 #e8e0e0 #0fb60c #cd2d2a #8b6354 #e11d1d #dbc46b #80c20e #8e5377 #82814e #22ab1a #bb9d2f #6c717d #81c10f #cca91e #af9a98 #536a95 #22ac18 #c23732 #c5a98d #db2121 #8c666a #7f933d #24aa1a #ad9999 #c53330 #cdb9ad #82953b #8c9840 #dd201f #7b884b #507093 #20ad17 #8b7450 #ad4e3b #b001af #c13a33 #8f6550 #d2a78b #cf2c2a #838546 #409a2b #577881 #cfc2ee #487f91 #0bb909 #cf2c29 #846859 #cf7f4a #e11d1d #707770 #4c7a91 #889934 #1ead16 #dcc56a #dbd2d2 #65cb61 #d07f7b #dbd2cf #e36f6e #8d656b #abd164 #b80db6 #876467 #837c53 #22aa1a #3259c7 #a4a096 #2f5cc6 #80c30e #a29142 #81646c #3f61b4 #6ac766 #c33333 #c1a593 #d92323 #845e72 #7a7f54 #21aa1b #c65ec5 #5f37bb #7c7062 #9f534f #dcd2ce #cd2d2c #756d72 #86715c #827d51 #79785f #5425d7 #4d9138 #c65fc4 #946446 #c53530 #b3998b #dba988 #d62624 #618237 #849336 #25aa19 #477f92 #aac86e #c3b580 #ae9999 #305cc5 #7abe71 #c43531 #4766a4 #bda693 #e17170 #989ead #999eaa #2b59cd #2d87a3 #7b8b47 #74c26c #de201f #aea28c #87a9b4 #b5443b #86b876\ barChartLimit 3\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/fetalGeneAtlas/Organ_cell_lineage.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/fetalGeneAtlas/Organ_cell_lineage.bb\ defaultLabelFields name2\ html fetalGeneAtlas\ labelFields name,name2\ longLabel Fetal Gene Atlas binned by cell lineage and organ from Cao et al 2020\ parent fetalGeneAtlas\ shortLabel Fetal Lineage\ track fetalGeneAtlasOrganCellLineage\ transformFunc NONE\ url https://cells.ucsc.edu/?ds=fetal-gene-atlas+all&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ fetalGeneAtlasOrgan Fetal Organ bigBarChart Fetal Gene Atlas binned by organ from Cao et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=fetal-gene-atlas+all&gene=$$

    Description

    \

    \ This group of tracks shows data from \ A human cell atlas of fetal gene expression. This is a collection of\ single cell and single nucleus combinatorial indexing-based RNA-seq data covering 4 million\ cells from 15 organs obtained during mid-gestation. The cells were sequenced in\ a highly multiplexed fashion and then clustered with annotations as described\ in Cao et al., 2020.

    \ \

    \ The Fetal Cells subtrack contains the \ data organized by cell type, with RNA signals from all cells of a given type pooled \ and averaged into one bar for each cell type. The \ Fetal Lineage subtrack shows \ similar data, but with the cell types subdivided more finely and by organ. Additional \ bar chart subtracks pool the cell by other characteristics such as by sex \ (Fetal Sex), assay \ (FetalAssay), donor \ (Fetal Donor ID), experiment \ (Fetal Exp), organ \ (Fetal Organ), and reverse transcription group \ (Fetal RT Group).

    \ \

    \ Please see descartes.brotmanbaty.org for\ further interactive displays and additional data.

    \ \

    Display Conventions and Configuration

    \

    \ The cell types are colored by which class they belong to according to the following table.\ The coloring algorithm allows cells that show some blended characteristics to show blended\ colors so there will be some color variation within a class. The colors will be purest in\ the Fetal Cells subtrack, where the bars \ represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.\ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    adipose
    fibroblast
    immune
    muscle
    hepatocyte
    trophoblast
    secretory
    ciliated
    epithelial
    endothelial
    glia
    \ \

    Methods

    \

    \ Three-level single-cell combinatorial indexing (sci-RNAseq3) as described in\ Cao et al., 2020 was used on 121 samples from 28 fetuses estimated 72\ to 129 days post-conception. This included samples from 15 organs. and\ resulted in RNA profiles for 4 million cells. The samples were flash-frozen for\ majority of the experiments and then nuclei extracted for sequencing. Samples\ from tissues from the kidney and digestive system were fixed after\ disassociation to deactivate endogenous RNases and proteases.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser. The UCSC command line utility matrixClusterColumns,\ matrixToBarChart, and bedToBigBed were used to transform these into a bar chart\ format bigBed file that can be visualized. The coloring was done by defining\ colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types.\ The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credits

    \

    Thanks to the many authors who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R,\ Zhang F et al.\ \ A human cell atlas of fetal gene expression.\ Science. 2020 Nov 13;370(6518).\ PMID: 33184181; PMC: PMC7780123\

    \

    \ Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L,\ Steemers FJ et al.\ \ The single-cell transcriptional landscape of mammalian organogenesis.\ Nature. 2019 Feb;566(7745):496-502.\ PMID: 30787437; PMC: PMC6434952\

    \ \ \ \ \ singleCell 1 barChartBars Adrenal Cerebellum Cerebrum Eye Heart Intestine Kidney Liver Lung Muscle Pancreas Placenta Spleen Stomach Thymus\ barChartColors #7c8e4a #e6ba08 #e5b909 #d6b015 #ae20a6 #5f7577 #849c3a #aa0ea6 #619841 #b90db6 #2359d2 #6f637a #836824 #1e5ad9 #b94138\ barChartLimit 3\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/fetalGeneAtlas/Organ.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/fetalGeneAtlas/Organ.bb\ defaultLabelFields name2\ html fetalGeneAtlas\ labelFields name,name2\ longLabel Fetal Gene Atlas binned by organ from Cao et al 2020\ parent fetalGeneAtlas\ shortLabel Fetal Organ\ track fetalGeneAtlasOrgan\ transformFunc NONE\ url https://cells.ucsc.edu/?ds=fetal-gene-atlas+all&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ fetalGeneAtlasRtGroup Fetal RT Group bigBarChart Fetal Gene Atlas binned by RT group from Cao et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=fetal-gene-atlas+all&gene=$$

    Description

    \

    \ This group of tracks shows data from \ A human cell atlas of fetal gene expression. This is a collection of\ single cell and single nucleus combinatorial indexing-based RNA-seq data covering 4 million\ cells from 15 organs obtained during mid-gestation. The cells were sequenced in\ a highly multiplexed fashion and then clustered with annotations as described\ in Cao et al., 2020.

    \ \

    \ The Fetal Cells subtrack contains the \ data organized by cell type, with RNA signals from all cells of a given type pooled \ and averaged into one bar for each cell type. The \ Fetal Lineage subtrack shows \ similar data, but with the cell types subdivided more finely and by organ. Additional \ bar chart subtracks pool the cell by other characteristics such as by sex \ (Fetal Sex), assay \ (FetalAssay), donor \ (Fetal Donor ID), experiment \ (Fetal Exp), organ \ (Fetal Organ), and reverse transcription group \ (Fetal RT Group).

    \ \

    \ Please see descartes.brotmanbaty.org for\ further interactive displays and additional data.

    \ \

    Display Conventions and Configuration

    \

    \ The cell types are colored by which class they belong to according to the following table.\ The coloring algorithm allows cells that show some blended characteristics to show blended\ colors so there will be some color variation within a class. The colors will be purest in\ the Fetal Cells subtrack, where the bars \ represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.\ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    adipose
    fibroblast
    immune
    muscle
    hepatocyte
    trophoblast
    secretory
    ciliated
    epithelial
    endothelial
    glia
    \ \

    Methods

    \

    \ Three-level single-cell combinatorial indexing (sci-RNAseq3) as described in\ Cao et al., 2020 was used on 121 samples from 28 fetuses estimated 72\ to 129 days post-conception. This included samples from 15 organs. and\ resulted in RNA profiles for 4 million cells. The samples were flash-frozen for\ majority of the experiments and then nuclei extracted for sequencing. Samples\ from tissues from the kidney and digestive system were fixed after\ disassociation to deactivate endogenous RNases and proteases.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser. The UCSC command line utility matrixClusterColumns,\ matrixToBarChart, and bedToBigBed were used to transform these into a bar chart\ format bigBed file that can be visualized. The coloring was done by defining\ colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types.\ The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credits

    \

    Thanks to the many authors who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R,\ Zhang F et al.\ \ A human cell atlas of fetal gene expression.\ Science. 2020 Nov 13;370(6518).\ PMID: 33184181; PMC: PMC7780123\

    \

    \ Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L,\ Steemers FJ et al.\ \ The single-cell transcriptional landscape of mammalian organogenesis.\ Nature. 2019 Feb;566(7745):496-502.\ PMID: 30787437; PMC: PMC6434952\

    \ \ \ \ \ singleCell 1 barChartBars Adrenal_H26350 Adrenal_H26547 Adrenal_H27098 Adrenal_H27471 Adrenal_H27472 Adrenal_H27474 Adrenal_H27552 Cerebellum_H27471 Cerebellum_H27472 Cerebellum_H27474 Cerebellum_H27477 Cerebellum_H27634 Cerebrum_H27058 Cerebrum_H27098 Cerebrum_H27423 Cerebrum_H27431 Cerebrum_H27432 Cerebrum_H27464 Cerebrum_H27471 Cerebrum_H27474 Eye_H27458 Eye_H27472 Eye_H27552 Eye_H27620 Eye_H27634 Heart_H26547 Heart_H27098 Heart_H27295 Heart_H27423 Heart_H27431 Heart_H27464 Heart_H27471 Heart_H27472 Heart_H27473 Intestine_H27771 Intestine_H27772 Intestine_H27798 Intestine_H27799 Intestine_H27876 Intestine_H27909 Intestine_H27913 Intestine_H27915 Intestine_H27948 Kidney_H27771 Kidney_H27772 Kidney_H27798 Kidney_H27870 Kidney_H27876 Kidney_H27909 Kidney_H27913 Kidney_H27915 Kidney_H27948 Liver_H27058 Liver_H27098 Liver_H27423 Liver_H27431 Liver_H27464 Liver_H27471 Liver_H27472 Liver_H27473 Liver_H27474 Lung_H26350 Lung_H26547 Lung_H27058 Lung_H27098 Lung_H27423 Lung_H27431 Lung_H27464 Lung_H27471 Lung_H27472 Lung_H27474 Lung_H27477 Muscle_H27098 Muscle_H27431 Muscle_H27471 Muscle_H27472 Muscle_H27473 Muscle_H27474 Muscle_H27477 Muscle_H27634 Pancreas_H27870 Pancreas_H27876 Pancreas_H27948 Placenta_H26350 Placenta_H26547 Placenta_H27058 Placenta_H27098 Placenta_H27423 Placenta_H27431 Placenta_H27464 Placenta_H27471 Placenta_H27472 Placenta_H27473 Placenta_H27474 Spleen_H26350 Spleen_H26547 Spleen_H27431 Spleen_H27464 Spleen_H27471 Spleen_H27472 Spleen_H27552 Spleen_H27634 Stomach_H27870 Stomach_H27876 Stomach_H27909 Stomach_H27948 Thymus_H26547 Thymus_H27423 Thymus_H27431 Thymus_H27471 Thymus_H27552 Thymus_H27634\ barChartColors #6a7d64 #92933f #71855a #6a7e64 #9e9936 #798e46 #879241 #e6b908 #e6b909 #e5b909 #e4b909 #e6ba08 #e2b60c #dab311 #e2b60c #e5b909 #dfb40f #e4b80a #e1b60d #e7ba08 #d6af15 #d8b114 #d4ae17 #cdaa1d #d1ad18 #ad21a5 #ab24a2 #ae20a5 #ae1ea8 #ae1fa6 #ab24a1 #a23394 #ae1fa7 #ac23a3 #616e83 #5d6d86 #717a5c #70835e #566d8a #656e65 #d6d3d6 #577189 #e6e1e3 #869d33 #72914c #999d33 #909a39 #819643 #8a993f #789051 #7f9646 #859743 #a616a1 #a22297 #a22099 #ab0ba9 #a713a3 #a715a1 #a813a3 #ab0ca8 #ac09aa #537f72 #629545 #549541 #588d57 #5e9b34 #4c8c58 #568f4e #7d993d #579e2f #6aa030 #548666 #b611b2 #b90cb6 #b80eb4 #b80eb5 #b611b2 #ac24a2 #b612b1 #b90cb6 #2059d5 #2858cd #68723e #5425d7 #9b97a8 #5c34c1 #737555 #d3c9e3 #6c5c85 #8f71e1 #81824e #746d6c #6d7959 #757f54 #b1997a #7f6d2f #ab9b79 #7e6a33 #687e28 #5e8638 #658027 #a05427 #1c58db #2c86a5 #1e57db #2b73b6 #b6433a #bc3d36 #e7e1e2 #e3ccca #e5ccc8 #bb3f37\ barChartLimit 3\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/fetalGeneAtlas/RT_group.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/fetalGeneAtlas/RT_group.bb\ defaultLabelFields name2\ html fetalGeneAtlas\ labelFields name,name2\ longLabel Fetal Gene Atlas binned by RT group from Cao et al 2020\ parent fetalGeneAtlas\ shortLabel Fetal RT Group\ track fetalGeneAtlasRtGroup\ transformFunc NONE\ url https://cells.ucsc.edu/?ds=fetal-gene-atlas+all&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ fetalGeneAtlasSex Fetal Sex bigBarChart Fetal Gene Atlas binned by sex from Cao et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=fetal-gene-atlas+all&gene=$$

    Description

    \

    \ This group of tracks shows data from \ A human cell atlas of fetal gene expression. This is a collection of\ single cell and single nucleus combinatorial indexing-based RNA-seq data covering 4 million\ cells from 15 organs obtained during mid-gestation. The cells were sequenced in\ a highly multiplexed fashion and then clustered with annotations as described\ in Cao et al., 2020.

    \ \

    \ The Fetal Cells subtrack contains the \ data organized by cell type, with RNA signals from all cells of a given type pooled \ and averaged into one bar for each cell type. The \ Fetal Lineage subtrack shows \ similar data, but with the cell types subdivided more finely and by organ. Additional \ bar chart subtracks pool the cell by other characteristics such as by sex \ (Fetal Sex), assay \ (FetalAssay), donor \ (Fetal Donor ID), experiment \ (Fetal Exp), organ \ (Fetal Organ), and reverse transcription group \ (Fetal RT Group).

    \ \

    \ Please see descartes.brotmanbaty.org for\ further interactive displays and additional data.

    \ \

    Display Conventions and Configuration

    \

    \ The cell types are colored by which class they belong to according to the following table.\ The coloring algorithm allows cells that show some blended characteristics to show blended\ colors so there will be some color variation within a class. The colors will be purest in\ the Fetal Cells subtrack, where the bars \ represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.\ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    adipose
    fibroblast
    immune
    muscle
    hepatocyte
    trophoblast
    secretory
    ciliated
    epithelial
    endothelial
    glia
    \ \

    Methods

    \

    \ Three-level single-cell combinatorial indexing (sci-RNAseq3) as described in\ Cao et al., 2020 was used on 121 samples from 28 fetuses estimated 72\ to 129 days post-conception. This included samples from 15 organs. and\ resulted in RNA profiles for 4 million cells. The samples were flash-frozen for\ majority of the experiments and then nuclei extracted for sequencing. Samples\ from tissues from the kidney and digestive system were fixed after\ disassociation to deactivate endogenous RNases and proteases.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser. The UCSC command line utility matrixClusterColumns,\ matrixToBarChart, and bedToBigBed were used to transform these into a bar chart\ format bigBed file that can be visualized. The coloring was done by defining\ colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types.\ The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credits

    \

    Thanks to the many authors who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R,\ Zhang F et al.\ \ A human cell atlas of fetal gene expression.\ Science. 2020 Nov 13;370(6518).\ PMID: 33184181; PMC: PMC7780123\

    \

    \ Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L,\ Steemers FJ et al.\ \ The single-cell transcriptional landscape of mammalian organogenesis.\ Nature. 2019 Feb;566(7745):496-502.\ PMID: 30787437; PMC: PMC6434952\

    \ \ \ \ \ singleCell 1 barChartBars F M\ barChartColors #dbb410 #e6ba08\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/fetalGeneAtlas/sex.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/fetalGeneAtlas/sex.bb\ defaultLabelFields name2\ html fetalGeneAtlas\ labelFields name,name2\ longLabel Fetal Gene Atlas binned by sex from Cao et al 2020\ parent fetalGeneAtlas\ shortLabel Fetal Sex\ track fetalGeneAtlasSex\ transformFunc NONE\ url https://cells.ucsc.edu/?ds=fetal-gene-atlas+all&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ fishClones FISH Clones bed 5 + Clones Placed on Cytogenetic Map Using FISH 0 100 0 150 0 127 202 127 0 0 0

    Description

    \

    \ This track shows the location of fluorescent in situ hybridization \ (FISH)-mapped clones along the assembly sequence. The locations of\ these clones were obtained from the NCBI Human BAC Resource\ here. Earlier versions of this track obtained this\ information directly from the paper Cheung, et al. (2001).\

    \ \

    \ More information about the BAC clones, including how they may be obtained, \ can be found at the \ Human BAC Resource and the \ Clone Registry web sites hosted by \ NCBI.\ To view Clone Registry information for a clone, click on the clone name at \ the top of the details page for that item.

    \ \

    Using the Filter

    \

    \ This track has a filter that can be used to change the color or \ include/exclude the display of a dataset from an individual lab. This is \ helpful when many items are shown in the track display, especially when only \ some are relevant to the current task. The filter is located at the top of \ the track description page, which is accessed via the small button to the \ left of the track's graphical display or through the link on the track's \ control menu. To use the filter:\

      \
    1. In the pulldown menu, select the lab whose data you would like to \ highlight or exclude in the display. \
    2. Choose the color or display characteristic that will be used to highlight \ or include/exclude the filtered items. If "exclude" is chosen, the \ browser will not display clones from the lab selected in the pulldown list. \ If "include" is selected, the browser will display clones only \ from the selected lab.\

    \

    \ When you have finished configuring the filter, click the Submit \ button.

    \ \

    Credits

    \

    \ We would like to thank all of the labs that have contributed to this resource:\

    \ \

    References

    \

    \ Cheung VG, Nowak N, Jang W, Kirsch IR, Zhao S, Chen XN, Furey TS, Kim UJ, Kuo WL, Olivier M et\ al.\ \ Integration of cytogenetic landmarks into the draft sequence of the human genome.\ Nature. 2001 Feb 15;409(6822):953-8.\ PMID: 11237021\

    \ map 1 color 0,150,0,\ group map\ longLabel Clones Placed on Cytogenetic Map Using FISH\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel FISH Clones\ track fishClones\ type bed 5 +\ visibility hide\ gap Gap bed 3 + Gap Locations 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track shows the gaps in the GRCh38 (hg38) genome assembly defined in the\ AGP file delivered with the sequence. These gaps are being closed during the \ finishing process on the human genome. For information on the AGP file format, see the NCBI \ AGP Specification. The NCBI website also provides an \ overview of genome assembly procedures, as well as \ specific information about the hg38 assembly.\

    \

    \ Gaps are represented as black boxes in this track.\ If the relative order and orientation of the contigs on either side\ of the gap is supported by read pair data, \ it is a bridged gap and a white line is drawn \ through the black box representing the gap. \

    \

    This assembly contains the following principal types of gaps:\

      \
    • short_arm - short arm gaps (count: 5; size range: 5,000,000 - 16,990,000 bases)
      • \
    • heterochromatin - heterochromatin gaps (count: 11; size range: 20,000 - 30,000,000 bases)
      • \
    • telomere - telomere gaps (count: 48; all of size 10,000 bases)
      • \
    • contig - gaps between contigs in scaffolds (count: 285; size range: 100 - 400,000 bases)
      • \
    • scaffold - gaps between scaffolds in chromosome assemblies (count: 470; size range: 10 - 624,000 bases)
      • \

    \ map 1 group map\ html gap\ longLabel Gap Locations\ shortLabel Gap\ track gap\ type bed 3 +\ visibility hide\ gc5BaseBw GC Percent bigWig 0 100 GC Percent in 5-Base Windows 0 100 0 0 0 128 128 128 0 0 0

    Description

    \

    \ The GC percent track shows the percentage of G (guanine) and C (cytosine) bases\ in 5-base windows. High GC content is typically associated with\ gene-rich areas.\

    \

    \ This track may be configured in a variety of ways to highlight different\ apsects of the displayed information. Click the\ "Graph configuration help"\ link for an explanation of the configuration options.\ \

    Credits

    \

    The data and presentation of this graph were prepared by\ Hiram Clawson.\

    \ \ map 0 altColor 128,128,128\ autoScale Off\ color 0,0,0\ graphTypeDefault Bar\ gridDefault OFF\ group map\ html gc5Base\ longLabel GC Percent in 5-Base Windows\ maxHeightPixels 128:36:16\ shortLabel GC Percent\ track gc5BaseBw\ type bigWig 0 100\ viewLimits 30:70\ visibility hide\ windowingFunction Mean\ genCC GenCC bigBed 9 + 33 The Gene Curation Coalition Annotations 0 100 0 0 0 127 127 127 0 0 0 https://search.thegencc.org/genes/$

    Description

    \ \

    \ This track shows annotations from The Gene Curation Coalition (GenCC).\ The GenCC provides information pertaining to the validity of gene-disease relationships, \ with a current focus on Mendelian diseases. Curated gene-disease relationships are submitted \ by GenCC member organizations that currently provide online resources (e.g. ClinGen, DECIPHER, \ Orphanet, etc.), as well as diagnostic laboratories that have committed to sharing their internal \ curated gene-level knowledge (e.g. Ambry Genetics, Illumina, Invitae, etc.).

    \

    \ The GenCC aims to clarify overlap between gene curation efforts and develop\ consistent terminology for validity, allelic requirement and mechanism\ of disease. Each item on this track corresponds with a gene, and contains\ a large number of information such as associated disease, evidence classification,\ specific submission notes and identifiers from different databases. In cases where\ multiple annotations exist for the same gene, multiple items are displayed.

    \ \

    Display Conventions and Configuration

    \

    \ Each item displayed represents a submission to the GenCC database. The displayed \ name is a combination of the gene symbol and the disease's original submission ID. \ This submission ID is either the OMIM#, MONDO# or Orphanet#. Clicking\ on any item will display the complete meta data for that item, including\ linkouts to the GenCC, NCBI, Ensembl, HGNC, GeneCards, Pombase (MONDO),\ and Human Phenotype Ontology (HPO). Mousing over any item will display the\ associated disease title, the classification title, and the mode of inheritance\ title.

    \ \

    \ Items are colored based on the GenCC classification, or validation, of the\ evidence in the color scheme seen in the table below. \ For more information on this process, see the GenCC\ validity terms FAQ. A filter for the track is also available\ to display a subset of the items based on their classification.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorEvidence classification
    Definitive
    Strong
    Moderate
    Supportive
    Limited
    Disputed Evidence
    Refuted Evidence
    No Known Disease Relationship
    \

    \ \

    \ Limitations: Most entries include both NM_ accessions as well as ENST and ENSG identifiers.\ From the original file, which contains no coordinates, two genes were not mapped\ to the hg38 genome, SLCO1B7 and ATXN8. This means that the hg38 track has 2 fewer items\ than what can be found in the GenCC download file. For hg19, one additional\ gene was not mapped, KCNJ18. In addition to this, the GenCC data in the Genome\ Browser does not include OMIM data due to licensing restrictions. For more\ information, see the Methods section below.

    \ \

    Data Access

    \

    \ The source data can be explored in \ GenCC database. The source files can also be found on the GenCC downloads page.

    \ \

    \ The GenCC data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored at UCSC in bigBed\ files that can be downloaded from\ our download server.\ The data may also be explored interactively using our\ REST API.

    \ \

    \ The file for this track may also be locally explored using our tools bigBedToBed \ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

    \ bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/bbi/genCC.bb stdout

    \ \

    Methods

    \

    \ The data were downloaded from the GenCC downloads page in tsv format. Manual\ curation was performed on the file to remove newline characters and tab characters present in \ the submission notes, in total fewer than 20 manual edits were made.

    \

    \ The track was first built on hg38 by associating the gene symbols with the NCBI MANE 1.0 \ release transcripts. These coordinates were added to the items as well as the NM_ accession,\ ENST ID and ENSG ID. For items where there was no gene symbol match in MANE (~130), the gene\ symbols were queried against GENCODEv40 comprehensive set release. In places where multiple\ transcript matches were found, the earliest transcription start and latest end site was used\ from among the transcripts to encompass the entire gene coordinates. Two genes were not able\ to be mapped for hg38, SLCO1B7 and ATXN8, resulting in two missing submissions in the Genome\ Browser when compared to the raw file. Lastly, the items were colored according to their\ evidence classification as seen on the GenCC database.

    \

    \ For hg19, the hg38 NM_ accessions were used to convert the item coordinates according to the\ latest hg19 refseq release. For items that failed to convert, the gene symbols were queried\ using the GENCODEv40 hg19 lift comprehensive set. One additional gene symbol failed to map in\ hg19, KCNJ18, leading to 3 fewer items on this track when compared to the raw file.

    \

    \ For both assemblies, GenCC OMIM data is excluded do to data restrictions.\ For complete documentation of the processing of these tracks, read the\ \ GenCC MakeDoc.

    \ \

    Credits

    \

    \ Thanks to the entire GenCC\ committee for creating these annotations and making them available.

    \ \

    References

    \

    \ DiStefano MT, Goehringer S, Babb L, Alkuraya FS, Amberger J, Amin M, Austin-Tse C, Balzotti M, Berg\ JS, Birney E et al.\ \ The Gene Curation Coalition: A global effort to harmonize gene-disease evidence resources.\ Genet Med. 2022 May 4;.\ PMID: 35507016\

    \ phenDis 1 bigDataUrl /gbdb/hg38/bbi/genCC.bb\ filterLabel.classification_title evidence classification\ filterValues.classification_title Supportive,Strong,Definitive,Limited,Moderate,No Known Disease Relationship,Disputed Evidence,Refuted Evidence\ group phenDis\ itemRgb on\ longLabel The Gene Curation Coalition Annotations\ mouseOver $disease_title - $classification_title - $moi_title\ shortLabel GenCC\ track genCC\ type bigBed 9 + 33\ url https://search.thegencc.org/genes/$\ urlLabel Link to GenCC Gene page\ urls ensTranscript="https://useast.ensembl.org/Multi/Search/Results?q=$$;site=ensembl_all" ensGene="https://useast.ensembl.org/Multi/Search/Results?q=$$;site=ensembl_all" refSeqAccession="https://www.ncbi.nlm.nih.gov/clinvar/?term=$$" uuid="https://search.thegencc.org/submissions/$$" gene_curie="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$$" gene_symbol="https://www.genecards.org/cgi-bin/carddisp.pl?gene=$$" disease_curie="https://www.pombase.org/term/$$" moi_curie="https://hpo.jax.org/app/browse/term/$$"\ wgEncodeGencodeSuper GENCODE Versions Container of all new and previous GENCODE releases 0 100 0 0 0 127 127 127 0 0 0

    \

    Description

    \

    \ The aim of the GENCODE \ Genes project (Harrow et al., 2006) is to produce a set of \ highly accurate annotations of evidence-based gene features on the human reference genome.\ This includes the identification of all protein-coding loci with associated\ alternative splice variants, non-coding with transcript evidence in the public \ databases (NCBI/EMBL/DDBJ) and pseudogenes. A high quality set of gene\ structures is necessary for many research studies such as comparative or \ evolutionary analyses, or for experimental design and interpretation of the \ results.

    \

    \ The GENCODE Genes tracks display the high-quality manual annotations merged \ with evidence-based automated annotations across the entire\ human genome. The GENCODE gene set presents a full merge\ between HAVANA manual annotation and Ensembl automatic annotation.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations. With \ each release, there is an increase in the number of annotations that have undergone\ manual curation. \ This annotation was carried out on the GRCh38 (hg38) genome assembly.\

    \ \

    \ For more information on the different gene tracks, see our Genes FAQ.

    \ \

    Display Conventions

    \

    \ These are multi-view composite tracks that contain differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ Only some subtracks are shown by default. The user can select which subtracks\ are displayed via the display controls on the track details pages.\ Further details on display conventions and data interpretation are available in the track descriptions.

    \ \

    Data access

    \

    \ GENCODE Genes and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator.\ The GENCODE data files for hg38 are available in our\ \ downloads directory as wgEncodeGencode* files in genePred format.\ All the tables can also be queried directly from our public MySQL\ servers, with instructions on this method available on our\ MySQL help page as well as on\ our blog.

    \ \

    Release Notes

    \

    \ GENCODE version 46\ corresponds to Ensembl 112.\

    \

    \ GENCODE version 45\ corresponds to Ensembl 111.\

    \

    \ GENCODE version 44\ corresponds to Ensembl 110.\

    \

    \ GENCODE version 43\ corresponds to Ensembl 109.\

    \

    \ GENCODE version 42\ corresponds to Ensembl 108.\

    \

    \ GENCODE version 41\ corresponds to Ensembl 107.\

    \

    \ GENCODE version 40\ corresponds to Ensembl 106.\

    \

    \ GENCODE version 39\ corresponds to Ensembl 105.\

    \

    \ GENCODE version 38\ corresponds to Ensembl 104.\

    \

    \ GENCODE version 37\ corresponds to Ensembl 103.\

    \

    \ GENCODE version 36\ corresponds to Ensembl 102.\

    \

    \ GENCODE version 35\ corresponds to Ensembl 101.\

    \

    \ GENCODE version 34\ corresponds to Ensembl 100.\

    \

    \ GENCODE version 33\ corresponds to Ensembl 99.\

    \

    \ GENCODE version 30\ corresponds to Ensembl 96.\

    \

    \ GENCODE version 29\ corresponds to Ensembl 94.\

    \

    \ GENCODE version 28\ corresponds to Ensembl 92.\

    \

    \ GENCODE version 27\ corresponds to Ensembl 90.\

    \

    \ GENCODE version 26\ corresponds to Ensembl 88.\

    \

    \ GENCODE version 24\ corresponds to Ensembl 84.\

    \ GENCODE version 23\ corresponds to Ensembl 81.\

    \ GENCODE version 22\ corresponds to Ensembl 79.\

    \ GENCODE version 20\ corresponds to Ensembl 76.\

    \

    \ See also: The GENCODE Project Release History.\

    \ \

    Credits

    \

    The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\

    \ \

    References

    \

    \ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\

    \ \ \

    A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\

    \ \

    Data Release Policy

    \

    GENCODE data are available for use without restrictions.

    \ \ genes 0 group genes\ longLabel Container of all new and previous GENCODE releases\ shortLabel GENCODE Versions\ superTrack on\ track wgEncodeGencodeSuper\ trackHandler wgEncodeGencode\ interactions Gene Interactions bigBed 9 Protein Interactions from Curated Databases and Text-Mining 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The Pathways and Gene Interactions track shows a summary of gene interaction and pathway data\ collected from two sources: curated pathway/protein-interaction databases and interactions found\ through text mining of PubMed abstracts.

    \ \

    Display Conventions and Configuration

    \

    Track Display

    \

    \ The track features a single item for each gene loci in the genome. On the item itself, the gene\ symbol for the loci is displayed followed by the top gene interactions noted by their gene symbol.\ Clicking an item will take you a\ gene interaction graph\ that includes detailed information on the support for the various interactions.

    \ \

    \ Items are colored based on the number of documents supporting the interactions of a\ particular gene. Genes with >100 supporting documents are colored\ black, genes with >10 but <100\ supporting documents are colored dark blue, and\ those with >10 supporting documents are colored\ light blue.

    \ \

    Pathway and Gene Interaction Display

    \

    \ See the\ help documentation\ accompanying this gene interaction graph for more information on its configuration.

    \ \

    Methods

    \

    \ The pathways and gene interactions were imported from a number of databases and mined from\ millions of PubMed abstracts. More information can be found in the\ "Data Sources\ and Methods"\ section of the help page for the gene interaction graph.

    \ \

    Data Access

    \

    \ The underlying data for this track can be accessed interactively through the\ Table Browser or\ Data Integrator. \ The data for this track is spread across a number of relational tables. The best way to \ export or analyze the data is using our public MySQL server.\ The list of tables and how they are linked together are described in the \ documentation \ linked at the bottom of the gene interaction viewer.\

    \ \

    \ The genome annotation is just a summary of the actual interactions database and therefore often not \ of interest to most users. It is stored in a bigBed file that can be obtained\ from the\ download server.\ \ The data underlying the\ graphical display is in bigBed\ formatted file named interactions.bb. Individual regions or the whole genome annotation\ can be obtained using our tool bigBedToBed. Instructions\ for downloading source code and precompiled binaries can be found\ here. The tool can also\ be used to obtain only features within a given range, for example:\

    \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/bbi/interactions.bb\ -chrom=chr6 -start=0 -end=1000000 stdout\

    \ \

    Credits

    \

    \ The text-mined data for the gene interactions and pathways were generated by Chris Quirk and\ Hoifung Poon as part of\ Microsoft Research, Project\ Hanover.

    \ \

    \ Pathway data was provided by the databases listed under\ "Data Sources\ and Methods"\ section of the help page for the gene interaction graph.\ In particular, thank you to Ian Donaldson from IRef for his\ unique collection of interaction databases.

    \ \

    \ The short gene descriptions are a merge of the HPRD\ and PantherDB gene/molecule classifications. Thanks to Arun Patil from\ HPRD for making them available as a download.

    \ \

    \ The track display and gene interaction graph\ were developed at the UCSC Genome Browser by Max Haeussler.

    \ \

    References

    \

    \ Poon H, Quirk C, DeZiel C, Heckerman D.\ Literome: PubMed-scale genomic knowledge base in the cloud\ Bioinformatics. 2014 Oct;30(19):2840-2.\ PMID: 24939151

    \ phenDis 1 bigDataUrl /gbdb/hg38/bbi/interactions.bb\ directUrl hgGeneGraph?db=hg38&gene=%s\ exonNumbers off\ group phenDis\ hgsid on\ itemRgb on\ labelOnFeature on\ linkIdInName on\ longLabel Protein Interactions from Curated Databases and Text-Mining\ noScoreFilter on\ shortLabel Gene Interactions\ track interactions\ type bigBed 9\ visibility hide\ ghGeneTss Gene TSS bigBed 9 GeneHancer Regulatory Elements and Gene Interactions 3 100 0 0 0 127 127 127 0 0 0 http://www.genecards.org/cgi-bin/carddisp.pl?gene=$$ regulation 1 itemRgb on\ longLabel GeneHancer Regulatory Elements and Gene Interactions\ parent geneHancer\ searchIndex name\ shortLabel Gene TSS\ track ghGeneTss\ type bigBed 9\ url http://www.genecards.org/cgi-bin/carddisp.pl?gene=$$\ urlLabel In GeneCards:\ view b_TSS\ visibility pack\ geneHancer GeneHancer bed 3 GeneHancer Regulatory Elements and Gene Interactions 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ GeneHancer is a database of human regulatory elements (enhancers and promoters) \ and their inferred target genes, which is embedded \ in GeneCards, a human gene \ compendium.\ The GeneHancer database was created by integrating >1 million regulatory elements \ from multiple genome-wide databases. \ Associations between the regulatory elements and target genes\ were based on multiple sources of linking molecular data, along with distance,\ as described in Methods below.\

    \

    \ The GeneHancer track set contains tracks representing:\

      \
    • Regulatory elements (GeneHancers)
      • \
    • Gene transcription start sites
      • \
    • Interactions (associations) between regulatory elements and genes
      • \
    • Clustered interactions, by gene target or GeneHancer
      • \
    \ The full set of elements and interactions is included, along with a highly filtered \ "double elite" subset.\ \

    Display Conventions

    \

    \ Each GeneHancer regulatory element is identified by a GeneHancer id. \ For example: GH0XJ101383 is located on chromosome X, with starting position of 101,383 kb\ (GRCh38/hg38 reference).\ Based on the id, one can obtain full GeneHancer information, as displayed in the Genomics \ section within the gene-centric web pages of GeneCards. Links to the GeneCards information pages\ are provided on the track details pages.

    \ \

    \ For the interaction tracks (Clusters and Interactions) a slight offset can be noticed between \ the line endpoints. This helps to identify the start and end of the feature. In this case,\ the higher point is the source (enhancers) and the lower point is the target.

    \ \

    Regulatory elements

    \

    \ Colors are used to distinguish promoters and enhancers and to indicate the GeneHancer element confidence score:

    \

    \ Promoters: \    High\    Medium\    Low\

    \

    \ Enhancers: \    High\    Medium\    Low\

    \ \

    Gene TSS

    \

    \ Colors are used to improve gene and interactions visibility. \ Successive genes are colored in different colors, and interactions of a gene have the same color.

    \ \

    Interactions

    \

    \ The Interactions view in Full mode shows GeneHancers and target genes connected by curves or \ half-rectangles (when one of the connected regions is off-screen). \ Configuration options are available to change the drawing style, and to limit the view to\ interactions with one or both connected items in the region.\ Interactions are identified on mouseover or clicked on for details at the end regions, or at \ the curve peak, which is marked with a gray ring shape. Interactions in the reverse direction\ (Gene TSS precedes GeneHancer on the genome) are drawn with a dashed line.\ \

    Clusters

    \

    \ The Clusters view groups interactions by target gene; the target gene and all GeneHancers \ associated with it are displayed in a single browser item. The gene TSS and associated GeneHancers \ are shown as blocks linked together, with the TSS drawn as a "tall" item, and the \ GeneHancers drawn "short". \ A user configuration option is provided to change the view to group by GeneHancer \ (with tall GeneHancer and short TSS's). \ Clusters composed of interactions with a single gene are colored to correspond to the gene, \ and those composed of interactions with multiple genes are colored dark gray.

    \ \

    Methods

    \

    \ GeneHancer identifications were created from >1 million regulatory elements \ obtained from seven genome-wide databases:\

      \
    1. ENCODE project\ Z-Lab Enhancer-like regions (version v3)
      2. \
    2. Ensembl regulatory build (version 92)
      3. \
    3. FANTOM5 atlas of active enhancers
      4. \
    4. VISTA Enhancer Browser
      5. \
    5. dbSUPER super-enhancers
      6. \
    6. EPDnew promoters
      7. \
    7. UCNEbase ultra-conserved noncoding elements
      8. \
    \

    \ Employing an integration algorithm that removes redundancy, the GeneHancer pipeline\ identified ˜250k integrated candidate regulatory elements (GeneHancers).\ Each GeneHancer is assigned an annotation-derived confidence score. \ The GeneHancers that are derived from more than one information source are defined \ as "elite" GeneHancers.

    \

    \ Gene-GeneHancer associations, and their likelihood-based scores, were generated \ using information that helps link regulatory elements to genes:\

      \
    1. eQTLs (expression quantitative trait loci) from GTEx (version v6p)
      2. \
    2. Capture Hi-C promoter-enhancer long range interactions
      3. \
    3. FANTOM5 eRNA-gene expression correlations
      4. \
    4. Cross-tissue expression correlations between a transcription factor interacting \ with a GeneHancer and a candidate target gene
      5. \
    5. Distance-based associations, including several approaches: \
        \
      1. Nearest neighbors, where each GeneHancer is associated with its two proximal genes
        2. \
      2. Overlaps with the gene territory (intragenic)
        3. \
      3. Proximity to the gene TSS (<2kb)
        4. \
      \

    \

    \ Associations that are derived from more than one information source are defined \ as "elite" associations, which leads to the definition of the "double elite"\ dataset - elite gene associations of elite GeneHancers.

    \

    \ More details are provided at the GeneCards\ \ information page.\ For a full description of the methods used, refer to the GeneHancer manuscript1.

    \

    \ Source data for the GeneHancer version 4.8 was downloaded during May 2018.

    \ \

    Data Access

    \

    \ Due to our agreement with the Weizmann Institute, we cannot allow full genome \ queries from the Table Browser or share download files. You can still access \ data for individual chromosomes or positional data from the \ Table Browser.

    \ \

    \ GeneHancer is the property of the Weizmann Institute of Science and \ is not available for download or mirroring by any third party \ without permission. Please contact the Weizmann Institute directly for \ data inquiries.

    \ \

    Credits

    \

    \ Thanks to Simon Fishilevich, Marilyn Safran, Naomi Rosen, and Tsippi Iny Stein of the GeneCards \ group and Shifra Ben-Dor of the Bioinformatics Core group at the Weizmann Institute, \ for providing this data and documentation, creating track hub versions of these tracks \ as prototypes, and overall responsiveness during development of these tracks.

    \

    \ Contact: \ simon.\ fishilevich@weizmann.\ ac.\ il\ \

    \ Supported in part by a grant from LifeMap Sciences Inc.

    \ \

    References

    \

    \ Fishilevich S., Nudel R., Rappaport N., Hadar R., Plaschkes I., Iny Stein T., Rosen N., Kohn A., Twik M., Safran M., Lancet D. and Cohen D. GeneHancer: genome-wide integration of enhancers and target genes in GeneCards, Database (Oxford) (2017), doi:10.1093/database/bax028. [PDF] PMID 28605766

    \

    \ Stelzer G, Rosen R, Plaschkes I, Zimmerman S, Twik M, Fishilevich S, Iny Stein T, Nudel R, Lieder I, Mazor Y, Kaplan S, Dahary, D, Warshawsky D, Guan- Golan Y, Kohn A, Rappaport N, Safran M, and Lancet D. The GeneCards Suite: From Gene Data Mining to Disease Genome Sequence Analysis, Current Protocols in Bioinformatics (2016), 54:1.30.1-1.30.33. doi: 10.1002/cpbi.5. PMID 27322403

    \ regulation 1 compositeTrack on\ dataVersion January 2019 (V2: Corrections to Experiment field)\ dimensions dimX=set dimY=view\ group regulation\ longLabel GeneHancer Regulatory Elements and Gene Interactions\ shortLabel GeneHancer\ sortOrder set=+ view=+\ subGroup1 view View a_GH=Regulatory_Elements b_TSS=Gene_TSS c_I=Interactions d_I=Clusters\ subGroup2 set Set a_ELITE=Double_Elite b_ALL=All\ tableBrowser noGenome\ track geneHancer\ type bed 3\ visibility hide\ geneid Geneid Genes genePred geneidPep Geneid Gene Predictions 0 100 0 90 100 127 172 177 0 0 0

    Description

    \ \

    \ This track shows gene predictions from the\ geneid program developed by\ Roderic Guigó's Computational Biology of RNA Processing\ group which is part of the\ Centre de Regulació Genòmica\ (CRG) in Barcelona, Catalunya, Spain.\

    \ \

    Methods

    \ \

    \ Geneid is a program to predict genes in anonymous genomic sequences designed\ with a hierarchical structure. In the first step, splice sites, start and stop\ codons are predicted and scored along the sequence using Position Weight Arrays\ (PWAs). Next, exons are built from the sites. Exons are scored as the sum of the\ scores of the defining sites, plus the the log-likelihood ratio of a\ Markov Model for coding DNA. Finally, from the set of predicted exons, the gene\ structure is assembled, maximizing the sum of the scores of the assembled exons.\

    \ \

    Credits

    \ \

    \ Thanks to Computational Biology of RNA Processing\ for providing these data.\ \

    \ \

    References

    \

    \ Blanco E, Parra G, Guigó R.\ Using geneid to identify genes.\ Curr Protoc Bioinformatics. 2007 Jun;Chapter 4:Unit 4.3.\ PMID: 18428791\

    \ \ \

    \ Parra G, Blanco E, Guigó R.\ \ GeneID in Drosophila.\ Genome Res. 2000 Apr;10(4):511-5.\ PMID: 10779490; PMC: PMC310871\

    \ genes 1 color 0,90,100\ group genes\ html ../../geneid\ longLabel Geneid Gene Predictions\ parent genePredArchive\ shortLabel Geneid Genes\ track geneid\ type genePred geneidPep\ visibility hide\ geneReviews GeneReviews bigBed 9 + GeneReviews 0 100 0 80 0 127 167 127 0 0 0 https://www.ncbi.nlm.nih.gov/books/NBK1116/?term=$$

    Description

    \ \

    \ GeneReviews is an online collection of expert-authored, peer-reviewed\ articles that describe specific gene-related diseases. GeneReviews articles are\ searchable by disease name, gene symbol, protein name, author, or title. GeneReviews\ is supported by the National Institutes of Health, hosted at NCBI as part of the\ \ Genetic Testing Registry (GTR). The GeneReviews data underlying this track will be updated frequently. \

    \ \

    The GeneReviews track allows the user to locate the NCBI GeneReviews resource\ quickly from the Genome Browser. Hovering the mouse on track items shows the gene symbol and \ associated diseases. A condensed version of the GeneReviews article\ name and its related diseases are displayed on the item details page as links. Similar\ information, when available, is provided in the details page of items from the UCSC Genes,\ RefSeq Genes, and OMIM Genes tracks.\

    \ \

    Data Access

    \

    \ The raw data for the GeneReviews track can be explored interactively with the\ Table Browser. Cross-referencing can be done with\ Data Integrator. The complete source file,\ in bigBed format, \ can be downloaded from our\ downloads directory.\ For automated analysis,\ the data may be queried from our\ REST API.\

    \ \

    \ Previous versions of this track can be found on our archive download server.\

    \ \

    References

    \ \

    \ Pagon RA, Adam MP, Bird TD, et al., editors. GeneReviews® [Internet]. Seattle (WA): University of Washington, Seattle; 1993-2014. Available from: \ \ https://www.ncbi.nlm.nih.gov/books/NBK1116.\

    \ \ phenDis 1 bigDataUrl /gbdb/hg38/geneReviews/geneReviews.bb\ color 0, 80, 0\ group phenDis\ html geneReviews\ longLabel GeneReviews\ mouseOver $name disease(s): $diseases\ noScoreFilter on\ shortLabel GeneReviews\ track geneReviews\ type bigBed 9 +\ url https://www.ncbi.nlm.nih.gov/books/NBK1116/?term=$$\ visibility hide\ giab Genome In a Bottle bed 3 Genome In a Bottle Structural Variants and Trios 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The tracks listed here contain data from\ The Genome in a\ Bottle Consortium (GIAB), an open, public consortium hosted by \ NIST. The priority of GIAB is to develop \ reference standards, reference methods, and reference data by authoritative characterization of \ human genomes for use in benchmarking, including analytical validation and technology \ development that will support translation of whole human genome sequencing to clinical practice. The\ sole purpose of this work is to provide validated variants and regions to enable technology and \ bioinformatics developers to benchmark and optimize their detection methods.\

    \

    \ The Ashkenazim and the Chinese Trio tracks show benchmark SNV calls from two \ son/father/mother trios of Ashkenazi Jewish and Han Chinese ancestry from the \ Personal Genome Project, \ consented for commercial redistribution.\

    \

    \ The Genome In a Bottle Structural Variants track shows benchmark SV calls (nssv) \ and variant regions (nsv) (5,262 insertions and 4,095 deletions, > 50 bp, in 2.51 Gb of \ the genome) from the son (HG002/NA24385) from the Ashkenazi Jewish trio.\

    \

    \ Samples are disseminated as National Institute of Standards and Technology (NIST)\ Reference Materials.\

    \

    Display Conventions and Configuration

    \ These tracks are multi-view composite tracks that contain multiple data types (views). Each view \ within a track has separate display controls, as described \ here.\

    \

    \ Unlike a regular genome browser track, the Ashkenazim and the Chinese Trio tracks display \ the genome variants of each individual as two haplotypes; SNPs, small insertions and deletions\ are mapped to each haplotype based on the phasing information of the VCF file. The\ haplotype 1 and the haplotype 2 are displayed as two separate black lanes for the\ browser window region. Each variant is drawn as a vertical dash. Homozygous variants will\ show two identical dashes on both haplotype lanes. Phased heterozygous variants are placed on\ one of the haplotype lanes and unphased heterozygous variants are displayed in the area\ between the two haplotype lanes.\

    \

    \ Predicted de novo variants and variants that are inconsistent with phasing in the trio son can be \ colored in red using the track Configuration options.\

    \ \

    Data Access

    \ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API.\

    \

    \ Benchmark VCF and BED files for small variants are available for GRCh37 and GRCh38 under each\ genome at NCBI FTP site. \ Structural variants are available for GRCh37 at dbVAR \ nst175.\

    \ \

    References

    \ \

    \ Zook JM, McDaniel J, Olson ND, Wagner J, Parikh H, Heaton H, Irvine SA, Trigg L, Truty R, McLean CY\ et al.\ \ An open resource for accurately benchmarking small variant and reference calls.\ Nat Biotechnol. 2019 May;37(5):561-566.\ PMID: 30936564; PMC: PMC6500473\

    \ \

    \ Zook JM, Hansen NF, Olson ND, Chapman L, Mullikin JC, Xiao C, Sherry S, Koren S, Phillippy AM,\ Boutros PC et al.\ \ A robust benchmark for detection of germline large deletions and insertions.\ Nat Biotechnol. 2020 Jun 15;.\ PMID: 32541955\

    \ \ varRep 1 compositeTrack on\ group varRep\ html giab\ longLabel Genome In a Bottle Structural Variants and Trios\ shortLabel Genome In a Bottle\ subGroup1 view Views trios=Trios sv=Structural_Variants\ track giab\ type bed 3\ visibility hide\ triosView Genome In a Bottle Trios vcfPhasedTrio Genome in a Bottle Ashkenazim and Chinese Trios 0 100 0 0 0 127 127 127 0 0 0 varRep 0 longLabel Genome in a Bottle Ashkenazim and Chinese Trios\ parent giab\ shortLabel Genome In a Bottle Trios\ track triosView\ type vcfPhasedTrio\ view trios\ visibility hide\ genscan Genscan Genes genePred genscanPep Genscan Gene Predictions 0 100 170 100 0 212 177 127 0 0 0

    Description

    \ \

    \ This track shows predictions from the\ Genscan program\ written by Chris Burge.\ The predictions are based on transcriptional, translational and donor/acceptor\ splicing signals as well as the length and compositional distributions of exons,\ introns and intergenic regions.\

    \ \

    \ For more information on the different gene tracks, see our Genes FAQ.

    \ \

    Display Conventions and Configuration

    \ \

    \ This track follows the display conventions for\ gene prediction\ tracks.\

    \ \

    \ The track description page offers the following filter and configuration\ options:\

      \
    • Color track by codons: Select the genomic codons option\ to color and label each codon in a zoomed-in display to facilitate validation\ and comparison of gene predictions. Go to the\ \ Coloring Gene Predictions and Annotations by Codon page for more\ information about this feature.
      • \
    \

    \ \

    Methods

    \ \

    \ For a description of the Genscan program and the model that underlies it,\ refer to Burge and Karlin (1997) in the References section below.\ The splice site models used are described in more detail in Burge (1998)\ below.\

    \ \

    Credits

    \ \ Thanks to Chris Burge for providing the Genscan program.\ \

    References

    \ \

    \ Burge C.\ Modeling Dependencies in Pre-mRNA Splicing Signals.\ In: Salzberg S, Searls D, Kasif S, editors.\ Computational Methods in Molecular Biology.\ Amsterdam: Elsevier Science; 1998. p. 127-163.\

    \ \

    \ Burge C, Karlin S.\ \ Prediction of complete gene structures in human genomic DNA.\ J. Mol. Biol. 1997 Apr 25;268(1):78-94.\ PMID: 9149143\

    \ genes 1 color 170,100,0\ group genes\ html ../../genscan\ longLabel Genscan Gene Predictions\ parent genePredArchive\ shortLabel Genscan Genes\ track genscan\ type genePred genscanPep\ visibility hide\ encTfChipPkENCFF567NFS GM12878 CUX1 narrowPeak Transcription Factor ChIP-seq Peaks of CUX1 in GM12878 from ENCODE 3 (ENCFF567NFS) 0 100 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of CUX1 in GM12878 from ENCODE 3 (ENCFF567NFS)\ parent encTfChipPk off\ shortLabel GM12878 CUX1\ subGroups cellType=GM12878 factor=CUX1\ track encTfChipPkENCFF567NFS\ gnfAtlas2 GNF Atlas 2 expRatio GNF Expression Atlas 2 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    This track shows expression data from the GNF Gene Expression\ Atlas 2. This contains two replicates each of 79 human\ tissues run over Affymetrix microarrays. \ By default, averages of related tissues are shown. Display all tissues\ by selecting "All Arrays" from the "Combine arrays" menu\ on the track settings page.\ As is standard with microarray data red indicates overexpression in the \ tissue, and green indicates underexpression. You may want to view gene\ expression with the Gene Sorter as well as the Genome Browser.

    \ \

    Credits

    \ Thanks to the \ Genomics Institute of the Novartis\ Research Foundation (GNF) for the data underlying this track. \ \

    References

    \

    \ Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G\ et al.\ \ A gene atlas of the mouse and human protein-encoding transcriptomes.\ Proc Natl Acad Sci U S A. 2004 Apr 20;101(16):6062-7.\ PMID: 15075390; PMC: PMC395923\

    \ expression 1 expDrawExons on\ expScale 4.0\ expStep 0.5\ expTable gnfHumanAtlas2MedianExps\ group expression\ groupings gnfHumanAtlas2Groups\ longLabel GNF Expression Atlas 2\ shortLabel GNF Atlas 2\ track gnfAtlas2\ type expRatio\ visibility hide\ gnomadPLI gnomAD Constraint Metrics bigBed 12 Genome Aggregation Database (gnomAD) Predicted Constraint Metrics (pLI and Z-scores) 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The Genome Aggregation Database (gnomAD) - Predicted Constraint Metrics track set contains\ metrics of pathogenicity per-gene as predicted for gnomAD v2.1.1 or gnomAD v4.0 and identifies genes subject to\ strong selection against various classes of mutation.\

    \ \

    \ This track includes several subtracks of constraint metrics calculated at gene (canonical\ transcript) and transcript level. For more information see the following\ blog post.\ The metrics include:\

      \
    • Observed and expected variant counts per transcript/gene\
    • Observed/Expected ratio (O/E)\
    • Z-scores of the observed counts compared to expected\
    • Probability of loss of function intolerance (pLI), for predicted loss-of-function (pLoF) variation only\
    \

    \ \

    Display Conventions and Configuration

    \

    \ There are two "groups" of tracks in this set, and two gnomAD versions (v2.1.1 and v4.0):\

      \
    1. Gene/Transcript LoF Constraint tracks: Predicted constraint metrics at the whole gene\ level or whole transcript level for three different types of variation: missense, synonymous,\ and predicted loss of function. The Gene Constraint track displays metrics for a canonical \ transcript per gene defined as the longest isoform. The Transcript Constraint track displays \ metrics for all transcript isoforms. Items on both tracks are shaded according to the pLI score,\ with outlier items shaded in grey.\
      LOEUF score legend
      \ Please note there is no gene-level track available for v4.0.\
    2. Gene/Transcript Missense Constraint tracks: The missense constraint tracks are built\ similarly to the LoF constraint tracks, however the items displayed are based on \ missense Z scores.\ All items are colored black, and individual Z scores can be seen on mouseover. \
    \ All tracks follow the general configuration settings for bigBed tracks. Mouseover on the \ Gene/Transcript Constraint tracks shows the pLI score and the loss of function \ observed/expected upper bound fraction (LOEUF), while mouseover on the Regional\ Constraint track shows only the missense O/E ratio. Clicking on items in any track brings\ up a table of constraint metrics.\

    \ \

    \ Clicking the grey box to the left of the track, or right-clicking and choosing the Configure option,\ brings up the interface for filtering items based on their pLI score, or labeling the items\ based on their Ensembl identifier and/or Gene Name.\

    \ \

    Methods

    \

    \ Please see the gnomAD browser help page and FAQ for further explanation of the topics below.

    \ \

    Observed and Expected Variant Counts

    \

    \ Observed count: The number of unique single-nucleotide variants in each transcript/gene\ with 123 or fewer alternative alleles (MAF < 0.1%).\

    \

    \ Expected count: A depth-corrected probability prediction model that takes into account\ sequence context, coverage, and methylation was used to predict expected\ variant counts. For more information please see Lek et al., 2016.\

    \

    \ Variants found in exons with a median depth < 1 were removed from both counts.\

    \ The O/E constraint score is the ratio of the observed/expected variants in that gene. Each item in\ this track shows the O/E ratio for three different types of variation: missense, synonymous, and\ loss-of-function. The O/E ratio is a continuous measurement of how tolerant a gene or\ transcript is to a certain class of variation. When a gene has a low O/E value, it is under stronger\ selection for that class of variation than a gene with a higher O/E value. Because Counts depend on\ gene size and sample size, the precision of the values varies a lot from one gene to the next. \ Therefore, the 90% confidence interval (CI) is also displayed along with the O/E ratio to better\ assist interpretation of the scores.\

    \ When evaluating how constrained a gene is, it is essential to consider the CI when using O/E. In \ research and clinical interpretation of Mendelian cases, pLI > 0.9 has been widely used for \ filtering. Accordingly, the Gnomad team suggests using the upper bound of the O/E confidence interval\ LOEUF < 0.35 as a threshold if needed.\

    \ Please see the Methods section below for more information about how the scores were calculated.\

    \ \

    pLI and Z-scores

    \

    \ The pLI and Z-scores of the deviation of observed variant counts relative to the expected number \ are intended to measure how constrained or intolerant a gene or transcript is to a specific type of\ variation. Genes or transcripts that are particularly depleted of a specific class of variation\ (as observed in the gnomAD data set) are considered intolerant of that specific type of variation.\ Z-scores are available for the missense and synonynmous categories and pLI scores are available for\ the loss-of-function variation.\

    \

    \ Missense and Synonymous: Positive Z-scores indicate more constraint (fewer observed \ variants than expected), and negative scores indicate less constraint (more observed variants than\ expected). A greater Z-score indicates more intolerance to the class of variation. Z-scores\ were generated by a sequence-context-based mutational model that predicted the number of expected\ rare (< 1% MAF) variants per transcript. The square root of the chi-squared value of the \ deviation of observed counts from expected counts was multiplied by -1 if the observed count was\ greater than the expected and vice versa. For the synonymous score, each Z-score was corrected by\ dividing by the standard deviation of all synonymous Z-scores between -5 and 5. For the missense\ scores, a mirrored distribution of all Z-scores between -5 and 0 was created, and then all missense\ Z-scores were corrected by dividing by the standard deviation of the Z-score of the mirror\ distribution.\

    \

    \ Loss-of-function: pLI closer to 1 indicates that the gene or transcript cannot tolerate\ protein truncating variation (nonsense, splice acceptor and splice donor variation). The gnomAD\ team recommends transcripts with a pLI >= 0.9 for the set of transcripts extremely intolerant\ to truncating variants. pLI is based on the idea that transcripts can be classified into three\ categories:\

      \
    • null: heterozygous or homozygous protein truncating variation is completely tolerated\
    • recessive: heterozygous variants are tolerated but homozygous variants are not\
    • haploinsufficient: heterozygous variants are not tolerated\
    \ An expectation-maximization algorithm was then used to assign a probability of belonging in each\ class to each gene or transcript. pLI is the probability of belonging in the haploinsufficient class.\

    \ \

    \ Please see Samocha et al., 2014 and Lek et al., 2016 for further discussion of these metrics.\

    \ \

    Transcripts Included

    \

    \ For version 2.1.1 only, the GENCODE transcripts were filtered according to the following criteria:\

      \
    • Must have methionine at start of coding sequence\
    • Must have stop codon at end of coding sequence\
    • Must be divisible by 3\
    • Must have at least one observed variant when removing exons with median depth < 1\
    • Must have reasonable number of missense and synonymous variants as determined by a Z-score cutoff\
    \

    \

    \ For version v2.1.1, the gnomAD gene/transcript data is based on hg19. In order to map transcripts and genes to the hg38 genome the following steps were taken:\

      \
    • Transcript track: The gnomAD ENST identifiers were attempted to be matched to all GENCODE versions\ between V20 and V44, giving coordinate priorities to the most recent models. In total 74550/80950 \ transcripts were mapped.
      • \
    • Genes track: The gnomAD file ENSG identifiers were attempted to be matched to all GENCODE versions\ between V20 and V44, giving coordinate priorities to the most recent models. This mapped 19221/19704\ genes. The remainder of the genes were attempted to be mapped using the same strategy, but matching\ on gene symbols instead of ENSG identifiers. In total 19567/19704 genes were mapped.
      • \
    \

    \ \

    \ For version v4.0, the gnomAD transcript data is based on hg38. In order to map the transcripts to hg38, the transcript version numbers in the gnomAD download file were joined with GENCODE V39 and NCBI RefSeq coordinates available at UCSC.\

    \ \

    UCSC Track Methods

    \

    Version based on gnomAD v2.1.1

    \
    Gene and Transcript Constraint tracks
    \

    \ Per gene and per transcript data were downloaded from the gnomAD Google Storage bucket:\ 

    \
gs://gnomad-public/release/2.1.1/constraint/gnomad.v2.1.1.lof_metrics.by_gene.txt.bgz\
gs://gnomad-public/release/2.1.1/constraint/gnomad.v2.1.1.lof_metrics.by_transcript.txt.bgz\
    \ These data were then joined to the Gencode set of genes/transcripts available at the UCSC\ Genome Browser (see previous section) and then transformed into a bigBed 12+5. For the full list of commands used to\ make this track please see the\ makedoc.\

    \ \

    Version based on gnomAD v4.0

    \
    Gene and Transcript Constraint tracks
    \

    \ Per gene and per transcript data were downloaded from the gnomAD Google Storage bucket:\ 

    \
https://storage.googleapis.com/gcp-public-data--gnomad/release/4.0/constraint/gnomad.v4.0.constraint_metrics.tsv\
    \ These data were then joined to the Gencode/NCBI set of genes/transcripts available at the UCSC\ Genome Browser and then transformed into a bigBed 12+5. For the full list of commands used to\ make this track please see the\ makedoc.\

    \ \

    Data Access

    \

    \ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all \ others, is available via our API. However, for bulk \ processing, it is recommended to download the dataset. The genome annotation is stored in a bigBed \ file that can be downloaded from the\ download server. The exact\ filenames can be found in the track configuration file. Annotations can be converted to ASCII text\ by our tool bigBedToBed which can be compiled from the source code or downloaded as\ a precompiled binary for your system. Instructions for downloading source code and binaries can be\ found here. The tool\ can also be used to obtain only features within a given range, for example:

    \ 
    \
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/gnomAD/pLI/pliByTranscript.bb -chrom=chr6 -start=0 -end=1000000 stdout\
    \

    \ Please refer to our\ mailing list archives\ for questions and example queries, or our\ Data Access FAQ\ for more information.\

    \ \

    \ More information about using and understanding the gnomAD data can be found in the\ gnomAD FAQ site.\

    \ \

    Credits

    \

    \ Thanks to the Genome Aggregation\ Database Consortium for making these data available. The data are released under the ODC Open Database License\ (ODbL) as described here.\

    \ \

    References

    \ \

    \ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ \ Analysis of protein-coding genetic variation in 60,706 humans.\ Nature. 2016 Aug 18;536(7616):285-91.\ PMID: 27535533; PMC: PMC5018207\

    \ \

    \ Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM,\ Ganna A, Birnbaum DP et al.\ \ The mutational constraint spectrum quantified from variation in 141,456 humans.\ Nature. 2020 May;581(7809):434-443.\ PMID: 32461654; PMC: PMC7334197\

    \ \

    \ Collins RL, Brand H, Karczewski KJ, Zhao X, Alföldi J, Francioli LC, Khera AV, Lowther C,\ Gauthier LD, Wang H et al.\ \ A structural variation reference for medical and population genetics.\ Nature. 2020 May;581(7809):444-451.\ PMID: 32461652; PMC: PMC7334194\

    \ \

    \ Cummings BB, Karczewski KJ, Kosmicki JA, Seaby EG, Watts NA, Singer-Berk M, Mudge JM, Karjalainen J,\ Satterstrom FK, O'Donnell-Luria AH et al.\ \ Transcript expression-aware annotation improves rare variant interpretation.\ Nature. 2020 May;581(7809):452-458.\ PMID: 32461655; PMC: PMC7334198\

    \ \ varRep 1 compositeTrack On\ dataVersion Release v4 (November 2023), Release 2.1.1 (March 6, 2019)\ group varRep\ html gnomadPLI\ labelFields name,geneName\ longLabel Genome Aggregation Database (gnomAD) Predicted Constraint Metrics (pLI and Z-scores)\ parent gnomadVariants\ pennantIcon New red ../goldenPath/newsarch.html#032624 "Updated Mar. 26, 2024"\ shortLabel gnomAD Constraint Metrics\ subGroup1 view Views v2=constraintV2 v4=constraintV4\ track gnomadPLI\ type bigBed 12\ visibility hide\ gnomadVariants gnomAD Variants Genome Aggregation Database (gnomAD) Genome and Exome Variants 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The gnomAD v4 track shows variants from 807,162 individuals, including 730,947 exomes and 76,215 genomes. This release includes the 76,156 genomes from the gnomAD v3.1.2 release as well as new exome data from 416,555 UK Biobank individuals. For more detailed information on gnomAD v4, see the related blog post. For now, the track is just the raw VCFs as provided by gnomAD, although a version of the track similar to v3.1.1 may be created in the future.

    \

    \ The gnomAD v3.1 track shows variants from 76,156 whole genomes (and no exomes), all mapped to the\ GRCh38/hg38 reference sequence. 4,454 genomes were added to the number of genomes in the previous\ v3 release. For more detailed information on gnomAD v3.1, see the related blog post.

    \ \

    \ The gnomAD v3.1.1 track contains the same underlying data as v3.1, but\ with minor corrections to the VEP annotations and dbSNP rsIDs. On the UCSC side, we have now\ included the mitochondrial chromosome data that was released as part of gnomAD v3.1 (but after\ the UCSC version of the track was released). For more information about gnomAD v3.1.1, please\ see the related\ changelog.

    \ \

    GnomAD Genome Mutational Constraint is based on v3.1.2 and is available only on hg38. \ It shows the reduced variation caused by purifying\ natural selection. This is similar to negative selection on loss-of-function\ (LoF) for genes, but can be calculated for non-coding regions too. \ Positive values are red and reflect stronger mutation constraint (and less variation), indicating \ higher natural selection pressure in a region. Negative values are green and \ reflect lower mutation constraint \ (and more variation), indicating less selection pressure and less functional effect.\ Briefly, for any 1kbp window in\ the genome, a model based on trinucleotide sequence context, base-level\ methylation, and regional genomic features predicts expected number of mutations,\ and compares this number to the observed number of mutations using a Z-score (see preprint\ in the Reference section for details). The chrX scores were added as received from the authors,\ as there are no de novo mutation data available on chrX (for estimating the effects of regional \ genomic features on mutation rates), they are more speculative than the ones on the autosomes.

    \ \

    \ The gnomAD Predicted Constraint Metrics track contains metrics of pathogenicity per-gene as \ predicted for gnomAD v2.1.1 and identifies genes subject to strong selection against various \ classes of mutation. This includes data on both the gene and transcript level.

    \ \

    \ The gnomAD v2 tracks show variants from 125,748 exomes and 15,708 whole genomes, all mapped to\ the GRCh37/hg19 reference sequence and lifted to the GRCh38/hg38 assembly. The data originate\ from 141,456 unrelated individuals sequenced as part of various population-genetic and\ disease-specific studies\ collected by the Genome Aggregation Database (gnomAD), release 2.1.1.\ Raw data from all studies have been reprocessed through a unified pipeline and jointly\ variant-called to increase consistency across projects. For more information on the processing\ pipeline and population annotations, see the following blog post\ and the 2.1.1 README.

    \

    \ gnomAD v2 data are based on the GRCh37/hg19 assembly. These tracks display the\ GRCh38/hg38 lift-over provided by gnomAD on their downloads site.\

    \ \

    On hg38 only, a subtrack "Gnomad mutational constraint" aka "Genome\ non-coding constraint of haploinsufficient variation (Gnocchi)" captures the\ depletion of variation caused by purifying natural selection.\ This is similar to negative selection on loss-of-function (LoF) for genes, but\ can be calculated for non-coding regions, too. Briefly, for any 1kbp window in\ the genome, a model based on trinucleotide sequence context, base-level\ methylation, and regional genomic features predicts expected number of mutations,\ and compares this number to the observed number of mutations using a Z-score (see Chen et al 2024 \ in the Reference section for details). The chrX scores were added as received from the authors, \ as there are no mutations available for chrX, they are more speculative than the ones on the autosomes.

    \ \

    \ For questions on the gnomAD data, also see the gnomAD FAQ.

    \

    \ More details on the Variant type(s) can be found on the Sequence Ontology page.

    \ \

    Display Conventions and Configuration

    \

    gnomAD v4

    \

    \ The gnomAD v4 track follows the standard display and configuration options available for\ VCF tracks, briefly explained below.\

    \
      \
    • In mode, a vertical line is drawn at the position of\ each variant.
      • \
    • In mode, "ref" and "alt" alleles are\ displayed to the left of a vertical line with colored portions corresponding to allele counts.\ Hovering the mouse pointer over a variant pops up a display of alleles and counts.
      • \
    \

    gnomAD v3.1.1

    \

    \ The gnomAD v3.1.1 track version follows the same conventions and configuration as the v3.1 track,\ except as noted below.

    \ \
      \
    1. There is a Non-cancer filter used to exclude/include variants from samples of individuals who\ were not ascertained for having cancer in a cancer study.\
    2. There are additional FILTER field filters: AS_VQSR, indel_stack (chrM only), and npg (chrM only).\
    3. Where possible, variants overlapping multiple transcripts/genes have been collapsed into one\ variant, with additional information available on the details page, which has roughly halved the\ number of items in the bigBed.\
    4. The bigBed has been split into two files, one with the information necessary for the track\ display, and one with the information necessary for the details page. For more information on\ this data format, please see the Data Access section below.\
    5. The VEP annotation is shown as a table instead of spread across multiple fields.\
    6. Intergenic variants have not been pre-filtered.\
    \ \

    gnomAD v3.1

    \

    \ By default, a maximum of 50,000 variants can be displayed at a time (before applying the filters\ described below), before the track switches to dense display mode.\

    \ \

    \ Mouse hover on an item will display many details about each variant, including the affected gene(s),\ the variant type, and annotation (missense, synonymous, etc).\

    \ \

    \ Clicking on an item will display additional details on the variant, including a population frequency\ table showing allele count in each sub-population.\

    \ \

    \ Following the conventions on the gnomAD browser, items are shaded according to their Annotation\ type:\ \ \ \ \ \
    pLoF
    Missense
    Synonymous
    Other
    \

    \ \

    Label Options

    \

    \ To maintain consistency with the gnomAD website, variants are by default labeled according\ to their chromosomal start position followed by the reference and alternate alleles,\ for example "chr1-1234-T-CAG". dbSNP rsID's are also available as an additional\ label, if the variant is present in dbSnp.\

    \ \

    Filtering Options

    \

    \ Three filters are available for these tracks:\

    \
      \
    • FILTER: Used to exclude/include variants that failed Random Forest\ (RF), Inbreeding Coefficient (Inbreeding Coeff), or Allele Count (AC0) filters. The\ PASS option is used to include/exclude variants that pass all of the RF,\ InbreedingCoeff, and AC0 filters, as denoted in the original VCF.\
    • Annotation type: Used to exclude/include variants that are annotated as\ Probability Loss of Function (pLoF), Missense, Synonymous, or Other, as\ annotated by VEP version 85 (GENCODE v19).\
    • Variant Type: Used to exclude/include variants according to the type of\ variation, as annotated by VEP v85.\
    \ There is one additional configurable filter on the minimum minor allele frequency.\ \

    gnomAD v2.1.1

    \

    \ The gnomAD v2.1.1 track follows the standard display and configuration options available for\ VCF tracks, briefly explained below.\

    \
      \
    • In mode, a vertical line is drawn at the position of\ each variant.
      • \
    • In mode, "ref" and "alt" alleles are\ displayed to the left of a vertical line with colored portions corresponding to allele counts.\ Hovering the mouse pointer over a variant pops up a display of alleles and counts.
      • \
    \ \

    Filtering Options

    \

    \ Four filters are available for these tracks, the same as the underlying VCF:\

      \
    • AC0: Allele Count 0 after filtering out low confidence genotypes (GQ < 20; DP < 10; and AB < 0.2 for het calls))\
    • InbreedingCoeff: Inbreeding Coefficient < -0.3\
    • RF: Used to exclude/include variants that failed Random Forest filtering thresholds of 0.055272738028512555, 0.20641025579497013 (probabilities of being a true positive variant) for SNPs, indels)\
    • Pass: Variant passes all 3 filters\
    \

    \ \

    \ There are two additional filters available, one for the minimum minor allele frequency, and a configurable filter on the QUAL score.\

    \ \ \

    UCSC Methods

    \

    \ The gnomAD v3.1.1 data is unfiltered.

    \

    \ For the v3.1 update only, in order to cut \ down on the amount of displayed data, the following variant\ types have been filtered out, but are still viewable in the gnomAD browser:\

      \
    • Regulatory Region Variants\
    • Downstream/Upstream Gene Variants\
    • Transcription Factor Binding Site Variants\
    \

    \ \

    \ For the full steps used to create the track at UCSC, please see the section\ denoted "gnomAD v3.1 update" in the hg38 makedoc.\

    \ \ \

    Data Access

    \ \

    \ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that\ can be downloaded from our download server, subject\ to the conditions set forth by the gnomAD consortium (see below). Variant VCFs can be found in the\ vcf/ subdirectory. The\ v3.1 and\ v3.1.1 variants can\ be found in a special directory as they have been transformed from the underlying VCF.

    \ \

    \ For the v3.1.1 variants in particular, the underlying bigBed only contains enough information\ necessary to use the track in the browser. The extra data like VEP annotations and CADD scores are\ available in the same directory\ as the bigBed but in the files gnomad.v3.1.1.details.tab.gz and\ gnomad.v3.1.1.details.tab.gz.gzi. The gnomad.v3.1.1.details.tab.gz contains the gzip\ compressed extra data in JSON format, and the .gzi file is available to speed searching of\ this data. Each variant has an associated md5sum in the name field of the bigBed which can be\ used along with the _dataOffset and _dataLen fields to get the associated external data, as show\ below:\ 

    \
# find item of interest:\
bigBedToBed genomes.bb stdout | head -4 | tail -1\
chr1    12416    12417    854246d79dc5d02dcdbd5f5438542b6e    [..omitted for brevity..]    chr1-12417-G-A    67293    902\
\
# use the final two fields, _dataOffset and _dataLen (add one to _dataLen to include a newline), to get the extra data:\
bgzip -b 67293 -s 903 gnomad.v3.1.1.details.tab.gz\
854246d79dc5d02dcdbd5f5438542b6e    {"DDX11L1": {"cons": ["non_coding_transcript_variant",  [..omitted for brevity..]\
    \ \

    \ The data can also be found directly from the gnomAD downloads page. Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.

    \ \

    The mutational constraints score was updated in October 2022 from a previous,\ now deprecated, pre-publication version. The old version can be found in our\ archive\ directory on the download server. It can be loaded by copying the URL into\ our "Custom tracks" input box.

    \ \

    Credits

    \

    \ Thanks to the Genome Aggregation\ Database Consortium for making these data available. The data are released under the Creative Commons Zero Public Domain Dedication as described here.\

    \ \

    \ Please note that some annotations within the provided files may have restrictions on usage. See here for more information. \

    \ \

    References

    \ \

    \ Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alfoldi J, Wang Q, Collins RL, Laricchia KM,\ Ganna A, Birnbaum DP et al.\ Variation across\ 141,456 human exomes and genomes reveals the spectrum of loss-of-function intolerance across human\ protein-coding genes. doi: https://doi.org/10.1101/531210.\

    \

    \ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ Analysis of protein-coding\ genetic variation in 60,706 humans. Nature. 2016 Aug 17;536(7616):285-91.\ PMID: 27535533;\ PMC: PMC5018207\

    \

    \ Chen S, Francioli LC, Goodrich JK, Collins RL, Kanai M, Wang Q, Alföldi J, Watts NA, Vittal C,\ Gauthier LD et al.\ \ A genomic mutational constraint map using variation in 76,156 human genomes.\ Nature. 2024 Jan;625(7993):92-100.\ PMID: 38057664
    \ (We added the data in 2021, then later referenced the 2022 Biorxiv preprint, in which the track was not called "Gnocchi" yet)\

    \ varRep 0 group varRep\ html gnomadV4\ longLabel Genome Aggregation Database (gnomAD) Genome and Exome Variants\ pennantIcon Updated red ../goldenPath/newsarch.html#032624 "Updated Mar. 26, 2024"\ shortLabel gnomAD Variants\ superTrack on\ track gnomadVariants\ ctgPos2 GRC Contigs ctgPos Genome Reference Consortium Contigs 0 100 0 0 0 127 127 127 0 0 24 chr1,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chrX,chrY, https://www.ncbi.nlm.nih.gov/nuccore/$$

    Description

    \

    \ This track shows the names of the assembled supercontigs for the GRCh38 (hg38) assembly \ determined by the Genome Reference Consortium (GRC).\

    \

    \ Data for this track were obtained from \ localId2acc files downloaded from GenBank.\

    \ map 0 chromosomes chr1,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chrX,chrY\ group map\ longLabel Genome Reference Consortium Contigs\ shortLabel GRC Contigs\ track ctgPos2\ type ctgPos\ url https://www.ncbi.nlm.nih.gov/nuccore/$$\ visibility hide\ grcIncidentDb GRC Incident bigBed 4 + GRC Incident Database 0 100 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/issue_detail.cgi?id=$$

    Description

    \

    \ This track shows locations in the human assembly where assembly\ problems have been noted or resolved, as reported by the\ Genome Reference Consortium (GRC). \

    \

    \ If you would like to report an assembly problem, please use the GRC\ issue reporting system.\

    \ \

    Methods

    \

    \ Data for this track are extracted from the GRC\ incident database from the specific species *_issues.gff3 file.\ The track is synchronized once daily to incorporate new updates. \

    \ \

    Credits

    \

    The data and presentation of this track were prepared by\ Hiram Clawson.\

    \ map 1 group map\ longLabel GRC Incident Database\ shortLabel GRC Incident\ track grcIncidentDb\ type bigBed 4 +\ url https://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/issue_detail.cgi?id=$$\ urlLabel GRC Incident:\ visibility hide\ gtexEqtlHighConf GTEx cis-eQTLs bigBed GTEx fine-mapped cis-eQTLs 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track shows genetic variants likely affecting proximal gene expression in 49 human tissues\ from the\ Genotype-Tissue Expression (GTEx)\ V8 data release.\ \ The data items displayed are gene expression quantitative trait loci within 1MB\ of gene transcription start sites (cis-eQTLs), significantly associated with\ gene expression and in the credible set of variants for the gene at a high\ confidence level. The data can only be calculated for the autosomes,\ so no data is shown on chrX.\

    \ \

    Display Conventions

    \

    \ Both the CAVIAR and DAP-G tracks show gene/variant pairs for 49 GTEx tissues.\ Variants are linked to the genes they interact with by a line. Variants\ are represented by thicker-width, single-base items. Genes are represented as\ thinner-width items covering the length of the gene. The direction of the\ chevrons on the line indicate whether the variant is upstream or downstream of\ the gene with the chevrons always pointing from the variant to the gene. If a\ variant is internal to the gene, then the variant is shown as a thicker segment\ than the gene. Items in the track are colored according to their tissue, with\ the color matching those in the GTEx Gene V8 Track.\ \

    \ Hovering over items in the track display will show the variant ID (often a\ dbSNP rsID), the target gene, tissue, and posterior probablity (Causal\ Posterior Probability (CPP) for CAVIAR; SNP Posterior Inclusion Probability\ (PIP) for DAP-G). Clicking an item will show the details of that interaction\ with link outs to view more details on the GTEx website.\

    \ \

    \ Track configuration supports filtering by tissue, gene, or posterior probability.\

    \ \

    Methods

    \

    \ Details on GTEx v8 analysis, including code, can be found in the\ GTEx GWAS Analysis Github.\

    \ \

    \ Raw data for these analyses are available from the\ GTEx Portal.\

    \ \

    CAVIAR

    \

    \ The CAVIAR\ track at UCSC was created using the CAVIAR high-confidence set, which\ represents the high causal variants that have a causal posterior probability\ (CPP) of > 0.1.\

    \ \

    DAP-G

    \

    \ The DAP-G track at\ UCSC was created using the DAP-G 95% credible set, which represents varaints\ with strong eQTLs signals, which are signal clusters with signal-level\ posterior inclusion probability (SPIP) > 0.95.\

    \ \

    Data Access

    \

    \ The raw data for this track can be accessed in multiple ways. It can be explored interactively \ using the Table Browser or \ Data Integrator. You can also access the data\ entries in JSON format through our \ JSON API.

    \ \

    \ The data in this track are organized in bigBed file format. The underlying files\ can be obtained from our downloads server:\

      \
    • GTEx CAVIAR - gtexCaviar.bb\
    • GTEx DAP-G - gtexDapg.bb\
    \ \ Individual regions or the whole set of genome-wide annotations can be obtained using our tool\ bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system from the utilities directory linked below. For example, to extract only\ annotations in a given region, you could use the following command:

    \

    \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/gtex/eQtl/gtexCaviar.bb\ -chrom=chr16 -start=34990190 -end=36727467 stdout

    \ \

    Credits

    \ Thanks to GTEx investigators, analysts, and portal team for providing this data.\ \

    References

    \

    \ GTEx Consortium.\ \ The GTEx Consortium atlas of genetic regulatory effects across human tissues.\ Science. 2020 Sep 11;369(6509):1318-1330.\ PMID: 32913098; PMC: PMC7737656\

    \

    \ Lee Y, Luca F, Pique-Regi R, Wen X.\ \ Bayesian Multi-SNP Genetic Association Analysis: Control of FDR and Use of\ Summary Statistics.\ bioRxiv. 2018 May 8.\

    \

    \ Wen X, Lee Y, Luca F, Pique-Regi R.\ \ Efficient Integrative Multi-SNP Association Analysis via Deterministic Approximation of\ Posteriors.\ Am J Hum Genet. 2016 Jun 2;98(6):1114-1129.\ PMID: 27236919; PMC: PMC4908152\

    \

    \ Ongen H, Buil A, Brown AA, Dermitzakis ET, Delaneau O.\ \ Fast and efficient QTL mapper for thousands of molecular phenotypes.\ Bioinformatics. 2016 May 15;32(10):1479-85.\ PMID: 26708335; PMC: PMC4866519\

    \

    \ Hormozdiari F, Kostem E, Kang EY, Pasaniuc B, Eskin E.\ \ Identifying causal variants at loci with multiple signals of association.\ Genetics. 2014 Oct;198(2):497-508.\ PMID: 25104515; PMC: PMC4196608\

    \

    \ GTEx Consortium.\ \ The Genotype-Tissue Expression (GTEx) project.\ Nat Genet. 2013 Jun;45(6):580-5.\ PMID: 23715323; PMC: PMC4010069\

    \

    \ \ GTEx Portal Documentation\

    \ regulation 1 compositeTrack off\ group regulation\ itemRgb on\ longLabel GTEx fine-mapped cis-eQTLs\ shortLabel GTEx cis-eQTLs\ track gtexEqtlHighConf\ type bigBed\ visibility hide\ gtexGene GTEx Gene bed 6 + Gene Expression in 53 tissues from GTEx RNA-seq of 8555 samples (570 donors) 0 100 0 0 0 127 127 127 1 0 0

    Description

    \

    \ The\ NIH Genotype-Tissue Expression (GTEx) project\ was created to establish a sample and data resource for studies on the relationship between \ genetic variation and gene expression in multiple human tissues. \ This track shows median gene expression levels in 51 tissues and 2 cell lines, \ based on RNA-seq data from the GTEx midpoint milestone data release (V6, October 2015).\ This release is based on data from 8555 tissue samples obtained from 570 adult post-mortem individuals.

    \ \

    Display Conventions

    \

    \ In Full and Pack display modes, expression for each gene is represented by a colored bargraph,\ where the height of each bar represents the median expression level across all samples for a \ tissue, and the bar color indicates the tissue.\ Tissue colors were assigned to conform to the GTEx Consortium publication conventions.\
         
    \ The bargraph display has the same width and tissue order for all genes.\ Mouse hover over a bar will show the tissue and median expression level.\ The Squish display mode draws a rectangle for each gene, colored to indicate the tissue\ with highest expression level if it contributes more than 10% to the overall expression\ (and colored black if no tissue predominates).\ In Dense mode, the darkness of the grayscale rectangle displayed for the gene reflects the total\ median expression level across all tissues.

    \

    \ The GTEx transcript model used to quantify expression level is displayed below the graph,\ colored to indicate the transcript class \ (coding, \ noncoding, \ pseudogene, \ problem), \ following GENCODE conventions.\

    \

    \ Click-through on a graph displays a boxplot of expression level quartiles with outliers, \ per tissue, along with a link to the corresponding gene page on the GTEx Portal.

    \ The track configuration page provides controls to limit the genes and tissues displayed,\ and to select raw or log transformed expression level display.

    \ \

    Methods

    \ Tissue samples were obtained using the GTEx standard operating procedures for informed consent\ and tissue collection, in conjunction with the \ \ National Cancer Institute Biorepositories and Biospecimen.\ All tissue specimens were reviewed by pathologists to characterize and\ verify organ source.\ Images from stained tissue samples can be viewed via the \ \ NCI histopathology viewer.\ The Qiagen PAXgene non-formalin tissue preservation product was used to stabilize \ tissue specimens without cross-linking biomolecules.

    \

    \ RNA-seq was performed by the GTEx Laboratory, Data Analysis and Coordinating Center \ (LDACC) at the Broad Institute.\ The Illumina TruSeq protocol was used to create an unstranded polyA+ library sequenced\ on the Illumina HiSeq 2000 platform to produce 76-bp paired end reads at a depth \ averaging 50M aligned reads per sample.\ Sequence reads were aligned to the hg19/GRCh37 human genome using Tophat v1.4.1 \ assisted by the GENCODE v19 transcriptome definition. \ Gene annotations were produced by taking the union of the GENCODE exons for each gene.\ Gene expression levels in RPKM were called via the RNA-SeQC tool, after filtering for \ unique mapping, proper pairing, and exon overlap.\ For further method details, see the \ \ GTEx Portal Documentation page.\

    \ UCSC obtained the gene-level expression files, gene annotations and sample metadata from the \ GTEx Portal Download page.\ Median expression level in RPKM was computed per gene/per tissue.

    \ \

    Subject and Sample Characteristics

    \

    \ The scientific goal of the GTEx project required that the donors and their biospecimen \ present with no evidence of disease. \ The tissue types collected were chosen based on their clinical significance, logistical \ feasibility and their relevance to the scientific goal of the project and the \ research community. \ Postmortem samples were collected from non-diseased donors with ages ranging from 20 to 79. 34.4% of donors were female and 65.6% male. \

    \

    \

    \

    \ Additional summary plots of GTEx sample characteristics are available at the \ \ GTEx Portal Tissue Summary page.

    \ \ \

    Data Access

    \

    \ The raw data for the GTEx Gene expression track can be accessed interactively through the \ \ Table Browser or Data Integrator. Metadata can be \ found in the connected tables below.\

      \
    • \ gtexGeneModel describes the gene names and coordinates in genePred format.
      • \
    • \ hgFixed.gtexTissue lists each of the 53 tissues in alphabetical order,\ corresponding to the comma separated expression values in gtexGene.
      • \
    • \ hgFixed.gtexSampleData has RPKM expression scores for each individual gene-sample \ data point, connected to gtexSample.
      • \
    • \ hgFixed.gtexSample contains metadata about sample time, collection site,\ and tissue, connected to the donor field in the gtexDonor table.
      • \
    • \ hgFixed.gtexDonor has anonymized information on the tissue donor.

    \

    \ For automated analysis and downloads, the track data files can be downloaded from \ our downloads server\ or the JSON API.\ Individual regions or the whole genome annotation can be accessed as text using our utility\ bigBedToBed. Instructions for downloading the utility can be found \ here. \ That utility can also be used to obtain features within a given range, e.g. \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/gtex/gtexTranscExpr.bb -chrom=chr21\ -start=0 -end=100000000 stdout

    \

    \ Data can also be obtained directly from GTEx at the following link:\ \ https://gtexportal.org/home/datasets

    \ \

    Credits

    \

    \ Statistical analysis and data interpretation was performed by The GTEx Consortium Analysis \ Working Group. \ Data was provided by the GTEx LDACC at The Broad Institute of MIT and Harvard.

    \ \

    References

    \

    \ GTEx Consortium.\ \ The Genotype-Tissue Expression (GTEx) project.\ Nat Genet. 2013 Jun;45(6):580-5.\ PMID: 23715323; \ PMC: PMC4010069\

    \ \

    \ Carithers LJ, Ardlie K, Barcus M, Branton PA, Britton A, Buia SA, Compton CC, DeLuca DS, Peter-Demchok J, Gelfand ET et al.\ \ A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project.\ Biopreserv Biobank. 2015 Oct;13(5):311-9.\ PMID: 26484571; \ PMC: PMC4675181

    \ \ Melé M, Ferreira PG, Reverter F, DeLuca DS, Monlong J, Sammeth M, Young TR, Goldmann JM,\ Pervouchine DD, Sullivan TJ et al.\ \ Human genomics. The human transcriptome across tissues and individuals.\ Science. 2015 May 8;348(6235):660-5.\ PMID: 25954002; PMC: PMC4547472

    \ \

    \ DeLuca DS, Levin JZ, Sivachenko A, Fennell T, Nazaire MD, Williams C, Reich M, Winckler W, Getz G.\ \ RNA-SeQC: RNA-seq metrics for quality control and process optimization.\ Bioinformatics. 2012 Jun 1;28(11):1530-2.\ PMID: 22539670; PMC: PMC3356847

    \ \ expression 1 group expression\ html gtexGeneExpr\ longLabel Gene Expression in 53 tissues from GTEx RNA-seq of 8555 samples (570 donors)\ maxItems 200\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel GTEx Gene\ spectrum on\ track gtexGene\ type bed 6 +\ visibility hide\ gtexTranscExpr GTEx Transcript bigBarChart Transcript Expression in 53 tissues from GTEx RNA-seq of 8555 samples/570 donors 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The\ NIH Genotype-Tissue Expression (GTEx)\ project was created to establish a sample and data resource for studies on the relationship\ between genetic variation and gene expression in multiple human tissues. \ This track displays median transcript expression levels in 53 tissues, based on\ RNA-seq data from the GTEx midpoint milestone data release (V6, October 2015).\ To view the GTEx tissues in anatomical context, see the \ GTEx Body Map.\

    \

    \ Data for this track were computed at UCSC from GTEx RNA-seq sequence data using the\ Toil\ pipeline running the kallisto transcript-level quantification tool.

    \ \

    Display Conventions

    \

    \ In Full and Pack display modes, expression for each transcript is represented by a colored \ bar chart, where the height of each bar represents the median expression level across all \ samples for a tissue, and the bar color indicates the tissue.\

    \

    \ The bar chart display has the same width and tissue order for all transcripts.\ Mouse hover over a bar will show the tissue and median expression level.\ The Squish display mode draws a rectangle for each gene, colored to indicate the tissue\ with highest expression level if it contributes more than 10% to the overall expression\ (and colored black if no tissue predominates).\ In Dense mode, the darkness of the grayscale rectangle displayed for the transcript reflects \ the total median expression level across all tissues.

    \

    \ Click-through on a graph displays a boxplot of expression level quartiles with outliers, \ per tissue.

    \ \

    Methods

    \

    \ Tissue samples were obtained using the GTEx standard operating procedures for informed consent\ and tissue collection, in conjunction with the \ \ National Cancer Institute Biorepositories and Biospecimen.\ All tissue specimens were reviewed by pathologists to characterize and\ verify organ source.\ Images from stained tissue samples can be viewed via the \ \ NCI histopathology viewer.\ The Qiagen PAXgene non-formalin tissue preservation product was used to stabilize \ tissue specimens without cross-linking biomolecules.

    \

    \ RNA-seq was performed by the GTEx Laboratory, Data Analysis and Coordinating Center \ (LDACC) at the Broad Institute.\ The Illumina TruSeq protocol was used to create an unstranded polyA+ library sequenced\ on the Illumina HiSeq 2000 platform to produce 76-bp paired end reads at a depth \ averaging 50M aligned reads per sample.

    \

    \ Sequence reads for this track were quantified to the hg38/GRCh38 human genome using kallisto\ assisted by the GENCODE v23 transcriptome definition. Read quantification was performed at UCSC\ by the Computational Genomics lab, using the Toil pipeline. The resulting kallisto files were\ combined to generate a transcript per million (TPM) expression matrix using the UCSC tool,\ kallistoToMatrix. Average TPM expression values for each tissue were calculated and \ used to generate a bed6+5 file that is the base of the track. This was done using the UCSC\ tool, expMatrixToBarchartBed. The bed track was then converted to a bigBed file using the \ UCSC tool, bedToBigBed.

    \

    \ The data in the hg19/GRCh37 version of this track was generated by converting the\ coordinates from the hg38/GRCh38 track data.\ Of the 189,615 BED entries from the original hg38 track, 176,220 were mapped over by transcript\ name to hg19 using wgEncodeGencodeCompV24lift37 (~93% coverage).

    \ \

    Subject and Sample Characteristics

    \

    \ The scientific goal of the GTEx project required that the donors and their biospecimen \ present with no evidence of disease. The tissue types collected were chosen based on their \ clinical significance, logistical feasibility and their relevance to the scientific goal \ of the project and the research community. Postmortem samples were collected from \ non-diseased donors with ages ranging from 20 to 79. 34.4% of donors were female and\ 65.6% male. \

    \

    \

    \

    \ Additional summary plots of GTEx sample characteristics are available at the \ \ GTEx Portal Tissue Summary page.

    \ \

    Credits

    \

    \ Samples were collected by the GTEx Consortium.\ RNA-seq was performed by the GTEx Laboratory, Data Analysis and Coordinating Center \ (LDACC) at the Broad Institute.\ John Vivian, Melissa Cline, and Benedict Paten of the UCSC Computational Genomics lab were\ responsible for the sequence read quantification used to produce this track. Kate Rosenbloom \ and Chris Eisenhart of the UCSC Genome Browser group were responsible for data file\ post-processing and track configuration.

    \ \

    References

    \

    \ J. Vivian et al., \ \ Rapid and efficient analysis of 20,000 RNA-seq samples with Toil\ bioRxiv bioRxiv, vol. 2, p. 62497, 2016.

    \

    \ GTEx Consortium.\ \ The Genotype-Tissue Expression (GTEx) project.\ Nat Genet. 2013 Jun;45(6):580-5.\ PMID: 23715323; \ PMC: PMC4010069

    \ \

    \ Carithers LJ, Ardlie K, Barcus M, Branton PA, Britton A, Buia SA, Compton CC, DeLuca DS, Peter-Demchok J, Gelfand ET et al.\ \ A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project.\ Biopreserv Biobank. 2015 Oct;13(5):311-9.\ PMID: 26484571; \ PMC: PMC4675181

    \ \

    \ Melé M, Ferreira PG, Reverter F, DeLuca DS, Monlong J, Sammeth M, Young TR, Goldmann JM,\ Pervouchine DD, Sullivan TJ et al.\ \ Human genomics. The human transcriptome across tissues and individuals.\ Science. 2015 May 8;348(6235):660-5.\ PMID: 25954002; PMC: PMC4547472

    \ \

    \ DeLuca DS, Levin JZ, Sivachenko A, Fennell T, Nazaire MD, Williams C, Reich M, Winckler W, Getz G.\ \ RNA-SeQC: RNA-seq metrics for quality control and process optimization.\ Bioinformatics. 2012 Jun 1;28(11):1530-2.\ PMID: 22539670; PMC: PMC3356847

    \ \ expression 1 barChartBars Adipose-Subcutaneous Adipose-Visceral_(Omentum) Adrenal_Gland Artery-Aorta Artery-Coronary Artery-Tibial Bladder Brain-Amygdala Brain-Anterior_cingulate_cortex_(BA24) Brain-Caudate_(basal_ganglia) Brain-Cerebellar_Hemisphere Brain-Cerebellum Brain-Cortex Brain-Frontal_Cortex_(BA9) Brain-Hippocampus Brain-Hypothalamus Brain-Nucleus_accumbens_(basal_ganglia) Brain-Putamen_(basal_ganglia) Brain-Spinal_cord_(cervical_c-1) Brain-Substantia_nigra Breast-Mammary_Tissue Cells-EBV-transformed_lymphocytes Cells-Transformed_fibroblasts Cervix-Ectocervix Cervix-Endocervix Colon-Sigmoid Colon-Transverse Esophagus-Gastroesophageal_Junction Esophagus-Mucosa Esophagus-Muscularis Fallopian_Tube Heart-Atrial_Appendage Heart-Left_Ventricle Kidney-Cortex Liver Lung Minor_Salivary_Gland Muscle-Skeletal Nerve-Tibial Ovary Pancreas Pituitary Prostate Skin-Not_Sun_Exposed_(Suprapubic) Skin-Sun_Exposed_(Lower_leg) Small_Intestine-Terminal_Ileum Spleen Stomach Testis Thyroid Uterus Vagina Whole_Blood\ barChartColors \\#FFA54F #EE9A00 #8FBC8F #8B1C62 #EE6A50 #FF0000 #CDB79E #EEEE00 \\#EEEE00 #EEEE00 #EEEE00 #EEEE00 #EEEE00 #EEEE00 #EEEE00 #EEEE00 \\#EEEE00 #EEEE00 #EEEE00 #EEEE00 #00CDCD #EE82EE #9AC0CD #EED5D2 \\#EED5D2 #CDB79E #EEC591 #8B7355 #8B7355 #CDAA7D #EED5D2 #B452CD \\#7A378B #CDB79E #CDB79E #9ACD32 #CDB79E #7A67EE #FFD700 #FFB6C1 \\#CD9B1D #B4EEB4 #D9D9D9 #3A5FCD #1E90FF #CDB79E #CDB79E #FFD39B \\#A6A6A6 #008B45 #EED5D2 #EED5D2 #FF00FF\ barChartLabel Tissue types\ barChartMatrixUrl /gbdb/hgFixed/human/expMatrix/cleanGtexMatrix.tab\ barChartMetric median\ barChartSampleUrl /gbdb/hgFixed/human/expMatrix/cleanGtexSamples.tab\ barChartUnit TPM\ bigDataUrl /gbdb/hg38/gtex/gtexTranscExpr.bb\ defaultLabelFields name2, name\ group expression\ labelFields name2, name\ longLabel Transcript Expression in 53 tissues from GTEx RNA-seq of 8555 samples/570 donors\ maxItems 300\ maxLimit 8000\ shortLabel GTEx Transcript\ track gtexTranscExpr\ type bigBarChart\ gwasCatalog GWAS Catalog bed 4 + NHGRI-EBI Catalog of Published Genome-Wide Association Studies 0 100 0 90 0 127 172 127 0 0 0 https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$

    Description

    \ \

    \ This track displays single nucleotide polymorphisms (SNPs) identified by published \ Genome-Wide Association Studies (GWAS), collected in the \ NHGRI-EBI GWAS Catalog\ published jointly by the National\ Human Genome Research Institute (NHGRI) and the European Bioinformatics Institute (EMBL-EBI).\ Some abbreviations\ are used above.\

    \

    \ From http://www.ebi.ac.uk/gwas/docs/about:\

    \ The Catalog is a quality controlled, manually curated, literature-derived\ collection of all published genome-wide association studies assaying at least\ 100,000 SNPs and all SNP-trait associations with p-values < 1.0 x\ 10-5 (Hindorff et al., 2009). For more details about the Catalog\ curation process and data extraction procedures, please refer to the\ Methods page.\
    \

    \ \

    Methods

    \ \

    \ From http://www.ebi.ac.uk/gwas/docs/methods:\

    \ The GWAS Catalog data is extracted from the literature. Extracted information\ includes publication information, study cohort information such as cohort size,\ country of recruitment and subject ethnicity, and SNP-disease association\ information including SNP identifier (i.e. RSID), p-value, gene and risk\ allele. Each study is also assigned a trait that best represents the phenotype\ under investigation. When multiple traits are analysed in the same study either\ multiple entries are created, or individual SNPs are annotated with their\ specific traits. Traits are used both to query and visualise the data in the\ Catalog's web form and diagram-based query interfaces.\

    \ Data extraction and curation for the GWAS Catalog is an expert activity; each\ step is performed by scientists supported by a web-based tracking and data\ entry system which allows multiple curators to search, annotate, verify and\ publish the Catalog data. Papers that qualify for inclusion in the Catalog are\ identified through weekly PubMed searches. They then undergo two levels of\ curation. First all data, including association information for SNPs, traits\ and general information about the study, are extracted by one curator. A second\ curator then performs an additional round of curation to double-check the\ accuracy and consistency of all the information. Finally, an automated pipeline\ performs validation of the extracted data, see the\ Quality control and SNP mapping section below for more\ details. This information is then used for queries and in the production of the\ diagram.\
    \

    \ \

    Data Access

    \ The raw data can be explored interactively with the Table Browser, or Data Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server\ (gwasCatalog*.txt.gz) or the public MySQL server. Please refer to our\ mailing list archives\ for questions, or our Data Access FAQ for more information.\

    \ \

    \ Previous versions of this track can be found on our archive download server.\

    \ \

    References

    \

    \ Hindorff LA, Sethupathy P, Junkins HA, Ramos EM, Mehta JP, Collins FS, Manolio TA.\ \ Potential etiologic and functional implications of genome-wide association loci for human diseases\ and traits.\ Proc Natl Acad Sci U S A. 2009 Jun 9;106(23):9362-7.\ PMID: 19474294; PMC: PMC2687147\

    \ phenDis 1 color 0,90,0\ group phenDis\ longLabel NHGRI-EBI Catalog of Published Genome-Wide Association Studies\ shortLabel GWAS Catalog\ snpTable snp144\ snpVersion 144\ track gwasCatalog\ type bed 4 +\ url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$\ urlLabel dbSNP:\ visibility hide\ gwipsvizRiboseq GWIPS-viz Riboseq bigWig 0 3589344 Ribosome Profiling from GWIPS-viz 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ Ribosome profiling (ribo-seq) is a technique that takes advantage of NGS\ technology to sequence ribosome-protected mRNA fragments and consequently\ allows the locations of translating ribosomes to be determined at the entire\ transcriptome level (Ingolia et al., 2009).\

    \ \

    \ For a more detailed description of the protocol, see Ingolia et al.\ (2012). For reviews on this technique and its applications, please refer to\ Ingolia (2014) and Michel et al. (2013).\

    \ \

    \ This track displays cumulative ribo-seq data obtained from human cells under\ different conditions and can be used for the exploration of human genomic loci\ that are being translated. The values on the y-axis represent the number of\ ribosome footprint sequence reads at a given position. As of February\ 2016, the track contains data from 9 studies (see References section for\ details). Further details about the aggregated track and additional ribo-seq\ data from these and other studies including data obtained from other organisms\ can be found at the specialized ribo-seq browser\ GWIPS-viz.\

    \ \

    Methods

    \ \

    \ For each study used to generate this track, raw fastq files were downloaded from\ a repository (e.g., NCBI GEO datasets).\ Cutadapt\ was used to trim the relevant adapter sequence from the reads, after which reads\ below 25 nt in length were discarded. The trimmed reads were aligned to\ ribosomal RNA using\ Bowtie\ and aligning reads were discarded. The remaining reads were then aligned to the\ hg38 (GRCh38) genome assembly using Bowtie. An offset of 15 nt (to infer the\ position of the A-site) was added to the most 5' nucleotide coordinate of each\ uniquely-mapped read.\

    \ \

    \ The alignment files from each of the included studies were merged to generate\ this aggregate track.\

    \ \

    \ See individual studies at\ GWIPS-viz for a full\ description of the methods of data acquisition and processing.\

    \ \

    Credits

    \ \

    \ Thanks to Audrey Michel, Stephen Kiniry and GWIPS-viz for providing the data for\ this track. If you wish to cite this track, please reference:\

    \ \

    \ Michel AM, Fox G, M Kiran A, De Bo C, O'Connor PB, Heaphy SM, Mullan JP, Donohue CA, Higgins DG,\ Baranov PV.\ GWIPS-viz: development of a ribo-seq genome browser.\ Nucleic Acids Res. 2014 Jan;42(Database issue):D859-64.\ PMID: 24185699; PMC: PMC3965066\

    \ \

    References

    \ \

    Data

    \ \

    \ Battle A, Khan Z, Wang SH, Mitrano A, Ford MJ, Pritchard JK, Gilad Y.\ \ Impact of regulatory variation from RNA to protein.\ Science. 2015 Feb 6;347(6222):664-7.\ PMID: 25657249;\ PMC: PMC4507520\

    \ \

    \ Cenik C, Cenik ES, Byeon GW, Grubert F, Candille SI, Spacek D, Alsallakh B, Tilgner H, Araya CL, Tang H et al.\ \ Integrative analysis of RNA, translation and protein levels reveals distinct regulatory variation across humans.\ Genome Res. 2015 Nov;25(11):1610-21.\ PMID: 26297486;\ PMC: PMC4617958\

    \ \ \

    \ Elkon R, Loayza-Puch F, Korkmaz G, Lopes R, van Breugel PC, Bleijerveld OB, Altelaar AM, Wolf E, Lorenzin F, Eilers M et al.\ \ Myc coordinates transcription and translation to enhance transformation and suppress invasiveness.\ EMBO Rep. 2015 Dec;16(12):1723-36.\ PMID: 26538417;\ PMC: PMC4687422\

    \ \

    \ Jang C, Lahens NF, Hogenesch JB, Sehgal A.\ \ Ribosome profiling reveals an important role for translational control in circadian gene expression.\ Genome Res 2015 Dec;25(12):1836-47.\ PMID: 26338483;\ PMC: PMC4665005\

    \ \

    \ Ji Z, Song R, Regev A, Struhl K.\ \ Many lncRNAs, 5'UTRs, and pseudogenes are translated and some are likely to express functional proteins.\ Elife. 2015 Dec 19;4.\ PMID: 26687005;\ PMC: PMC4739776\

    \ \

    \ Sidrauski C, McGeachy AM, Ingolia NT, Walter P.\ \ The small molecule ISRIB reverses the effects of eIF2α phosphorylation on translation and stress granule assembly.\ Elife. 2015 Feb 26;4.\ PMID: 25719440;\ PMC: PMC4341466\

    \ \

    \ Tanenbaum ME, Stern-Ginossar N, Weissman JS, Vale RD.\ \ Regulation of mRNA translation during mitosis.\ Elife. 2015 Aug 25;4.\ PMID: 26305499;\ PMC: PMC4548207\

    \ \

    \ Tirosh O, Cohen Y, Shitrit A, Shani O, Le-Trilling VT, Trilling M, Friedlander G, Tanenbaum M, Stern-Ginossar N.\ \ The transcription and translation landscapes during human cytomegalovirus infection reveal novel host-pathogen interactions.\ PLoS Pathog. 2015 Nov 24;11(11):e1005288.\ PMID: 26599541;\ PMC: PMC4658056\

    \ \

    \ Werner A, Iwasaki S, McGourty CA, Medina-Ruiz S, Teerikorpi N, Fedrigo I, Ingolia NT, Rape M.\ \ Cell fate determination by ubiquitin-dependent regulation of translation.\ Nature. 2015 Sep 24;525(7570):523-7.\ PMID: 26399832;\ PMC: PMC4602398\

    \ \

    Protocol/Technique

    \ \

    \ Ingolia NT.\ \ Ribosome profiling: new views of translation, from single codons to genome scale.\ Nat Rev Genet. 2014 Mar;15(3):205-13.\ PMID: 24468696\

    \ \

    \ Ingolia NT, Brar GA, Rouskin S, McGeachy AM, Weissman JS.\ \ The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-\ protected mRNA fragments.\ Nat Protoc. 2012 Jul 26;7(8):1534-50.\ PMID: 22836135; PMC: PMC3535016\

    \ \

    \ Ingolia NT, Ghaemmaghami S, Newman JR, Weissman JS.\ \ Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.\ Science. 2009 Apr 10;324(5924):218-23.\ PMID: 19213877; PMC: PMC2746483\

    \ \

    \ Michel AM, Baranov PV.\ \ Ribosome profiling: a Hi-Def monitor for protein synthesis at the genome-wide scale.\ Wiley Interdiscip Rev RNA. 2013 Sep-Oct;4(5):473-90.\ PMID: 23696005; PMC: PMC3823065\

    \ expression 0 autoScale off\ group expression\ html gwipsvizRiboseq\ longLabel Ribosome Profiling from GWIPS-viz\ maxHeightPixels 100:32:8\ shortLabel GWIPS-viz Riboseq\ track gwipsvizRiboseq\ type bigWig 0 3589344\ viewLimits 0:2000\ visibility hide\ heartCellAtlas Heart Cell Atlas Heart single cell RNA data from https://heartcellatlas.com 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track displays data from \ Cells of the adult human heart. Single-cell and single-nucleus RNA\ sequencing (RNA-seq) was used to profile transcriptomes from six regions of the heart:\ the interventricular septum (SP), apex (AX), left ventricle (LV), right\ ventricle (RV), left atrium (LA), and right atrium (RA). A total of 11 cardiac\ cell types were identified along with their marker genes after uniform manifold\ approximation and projection (UMAP) embedding of 487,106 cells. Note that the RNA-seq\ data is generated using Tag-sequencing (Tag-seq) and does not cover all exons.

    \ \

    \ This track collection contains nine bar chart tracks of RNA expression in the\ human heart where cells are grouped by cell type \ (Heart HCA Cells), age \ (Heart HCA Age), donor \ (Heart HCA Donor), region of the heart \ (Heart HCA Region),\ sample (Heart HCA Sample), sex \ (Heart HCA Sex), source \ (Heart HCA Source), cell\ state (Heart HCA State), \ and 10x chemistry version \ (Heart HCA Version). \ The default track displayed is \ Heart HCA Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    adipose
    fibroblast
    immune
    muscle
    lymphoid
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Heart HCA Cells subtrack, where the \ bars represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy heart tissues were obtained from 14 UK and North American transplant\ organ donors ages 40-75. Tissues were taken from deceased donors after\ circulatory death (DCD) and after brain death (DBD). To minimize\ transcriptional degradation, heart tissues were stored and transported on ice\ until freezing or tissue dissociation. Single nuclei were isolated from\ flash-frozen tissue using mechanical homogenization with a glass Dounce tissue\ grinder. Fresh heart tissues were enzymatically dissociated and automatically\ digested using gentleMACS Octo Dissociator. Next, Hoechst-positive single\ nuclei were FACS sorted prior to library preparation. In parallel, Cell\ suspensions from fresh heart tissue were enriched for CD45+ cells using MACS LS\ columns. Libraries of single cell and single nuclei were prepared using 10x\ Genomics 3' v2 or v3. 3' gene expression libraries were sequenced on an\ Illumina HiSeq4000 and NextSeq500. In total 45,870 cells, 78,023 CD45+ enriched\ cells, and 363,213 nuclei were profiled for 11 major cell types of the heart.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Monika Litviňuková, Carlos\ Talavera-Ló, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    References

    \

    \ Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\ Polanski K, Heinig M, Lee M et al.\ \ Cells of the adult human heart.\ Nature. 2020 Dec;588(7838):466-472.\ PMID: 32971526; PMC: PMC7681775\

    \ singleCell 0 group singleCell\ longLabel Heart single cell RNA data from https://heartcellatlas.com\ shortLabel Heart Cell Atlas\ superTrack on\ track heartCellAtlas\ visibility hide\ heartAtlasAgeGroup Heart HCA Age bigBarChart Heart cell RNA binned by age group of donor from https://heartcellatlas.org 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=heart-cell-atlas+global&gene=$$

    Description

    \

    \ This track displays data from \ Cells of the adult human heart. Single-cell and single-nucleus RNA\ sequencing (RNA-seq) was used to profile transcriptomes from six regions of the heart:\ the interventricular septum (SP), apex (AX), left ventricle (LV), right\ ventricle (RV), left atrium (LA), and right atrium (RA). A total of 11 cardiac\ cell types were identified along with their marker genes after uniform manifold\ approximation and projection (UMAP) embedding of 487,106 cells. Note that the RNA-seq\ data is generated using Tag-sequencing (Tag-seq) and does not cover all exons.

    \ \

    \ This track collection contains nine bar chart tracks of RNA expression in the\ human heart where cells are grouped by cell type \ (Heart HCA Cells), age \ (Heart HCA Age), donor \ (Heart HCA Donor), region of the heart \ (Heart HCA Region),\ sample (Heart HCA Sample), sex \ (Heart HCA Sex), source \ (Heart HCA Source), cell\ state (Heart HCA State), \ and 10x chemistry version \ (Heart HCA Version). \ The default track displayed is \ Heart HCA Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    adipose
    fibroblast
    immune
    muscle
    lymphoid
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Heart HCA Cells subtrack, where the \ bars represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy heart tissues were obtained from 14 UK and North American transplant\ organ donors ages 40-75. Tissues were taken from deceased donors after\ circulatory death (DCD) and after brain death (DBD). To minimize\ transcriptional degradation, heart tissues were stored and transported on ice\ until freezing or tissue dissociation. Single nuclei were isolated from\ flash-frozen tissue using mechanical homogenization with a glass Dounce tissue\ grinder. Fresh heart tissues were enzymatically dissociated and automatically\ digested using gentleMACS Octo Dissociator. Next, Hoechst-positive single\ nuclei were FACS sorted prior to library preparation. In parallel, Cell\ suspensions from fresh heart tissue were enriched for CD45+ cells using MACS LS\ columns. Libraries of single cell and single nuclei were prepared using 10x\ Genomics 3' v2 or v3. 3' gene expression libraries were sequenced on an\ Illumina HiSeq4000 and NextSeq500. In total 45,870 cells, 78,023 CD45+ enriched\ cells, and 363,213 nuclei were profiled for 11 major cell types of the heart.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Monika Litviňuková, Carlos\ Talavera-Ló, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    References

    \

    \ Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\ Polanski K, Heinig M, Lee M et al.\ \ Cells of the adult human heart.\ Nature. 2020 Dec;588(7838):466-472.\ PMID: 32971526; PMC: PMC7681775\

    \ singleCell 1 barChartBars 40-45 45-50 50-55 55-60 60-65 65-70 70-75\ barChartColors #c22694 #c22794 #c22498 #c32c8d #bd5269 #b6615d #c63c79\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/heartCellAtlas/age_group.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/heartCellAtlas/age_group.bb\ defaultLabelFields name\ html heartCellAtlas\ labelFields name,name2\ longLabel Heart cell RNA binned by age group of donor from https://heartcellatlas.org\ parent heartCellAtlas\ shortLabel Heart HCA Age\ track heartAtlasAgeGroup\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=heart-cell-atlas+global&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ heartAtlasCellTypes Heart HCA Cells bigBarChart Heart cell RNA binned by cell type from https://heartcellatlas.org 3 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=heart-cell-atlas+global&gene=$$

    Description

    \

    \ This track displays data from \ Cells of the adult human heart. Single-cell and single-nucleus RNA\ sequencing (RNA-seq) was used to profile transcriptomes from six regions of the heart:\ the interventricular septum (SP), apex (AX), left ventricle (LV), right\ ventricle (RV), left atrium (LA), and right atrium (RA). A total of 11 cardiac\ cell types were identified along with their marker genes after uniform manifold\ approximation and projection (UMAP) embedding of 487,106 cells. Note that the RNA-seq\ data is generated using Tag-sequencing (Tag-seq) and does not cover all exons.

    \ \

    \ This track collection contains nine bar chart tracks of RNA expression in the\ human heart where cells are grouped by cell type \ (Heart HCA Cells), age \ (Heart HCA Age), donor \ (Heart HCA Donor), region of the heart \ (Heart HCA Region),\ sample (Heart HCA Sample), sex \ (Heart HCA Sex), source \ (Heart HCA Source), cell\ state (Heart HCA State), \ and 10x chemistry version \ (Heart HCA Version). \ The default track displayed is \ Heart HCA Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    adipose
    fibroblast
    immune
    muscle
    lymphoid
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Heart HCA Cells subtrack, where the \ bars represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy heart tissues were obtained from 14 UK and North American transplant\ organ donors ages 40-75. Tissues were taken from deceased donors after\ circulatory death (DCD) and after brain death (DBD). To minimize\ transcriptional degradation, heart tissues were stored and transported on ice\ until freezing or tissue dissociation. Single nuclei were isolated from\ flash-frozen tissue using mechanical homogenization with a glass Dounce tissue\ grinder. Fresh heart tissues were enzymatically dissociated and automatically\ digested using gentleMACS Octo Dissociator. Next, Hoechst-positive single\ nuclei were FACS sorted prior to library preparation. In parallel, Cell\ suspensions from fresh heart tissue were enriched for CD45+ cells using MACS LS\ columns. Libraries of single cell and single nuclei were prepared using 10x\ Genomics 3' v2 or v3. 3' gene expression libraries were sequenced on an\ Illumina HiSeq4000 and NextSeq500. In total 45,870 cells, 78,023 CD45+ enriched\ cells, and 363,213 nuclei were profiled for 11 major cell types of the heart.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Monika Litviňuková, Carlos\ Talavera-Ló, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    References

    \

    \ Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\ Polanski K, Heinig M, Lee M et al.\ \ Cells of the adult human heart.\ Nature. 2020 Dec;588(7838):466-472.\ PMID: 32971526; PMC: PMC7681775\

    \ singleCell 1 barChartBars adipocyte atrial_cardiomyocyte endothelial fibroblast lymphoid mesothelial myeloid neuronal not_assigned pericyte smooth_muscle_cell ventricular_cardiomyocyte doublet\ barChartColors #f1803d #c1229a #07bc02 #b5562a #eb1613 #1494b3 #de2b02 #e6af0e #c12792 #c15f4e #b06a5a #c1229b #d69f85\ barChartLimit 3\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/heartCellAtlas/cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/heartCellAtlas/cell_type.bb\ defaultLabelFields name\ html heartCellAtlas\ labelFields name,name2\ longLabel Heart cell RNA binned by cell type from https://heartcellatlas.org\ parent heartCellAtlas\ shortLabel Heart HCA Cells\ track heartAtlasCellTypes\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=heart-cell-atlas+global&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility pack\ heartAtlasDonor Heart HCA Donor bigBarChart Heart cell RNA binned by organ donor from https://heartcellatlas.org 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=heart-cell-atlas+global&gene=$$

    Description

    \

    \ This track displays data from \ Cells of the adult human heart. Single-cell and single-nucleus RNA\ sequencing (RNA-seq) was used to profile transcriptomes from six regions of the heart:\ the interventricular septum (SP), apex (AX), left ventricle (LV), right\ ventricle (RV), left atrium (LA), and right atrium (RA). A total of 11 cardiac\ cell types were identified along with their marker genes after uniform manifold\ approximation and projection (UMAP) embedding of 487,106 cells. Note that the RNA-seq\ data is generated using Tag-sequencing (Tag-seq) and does not cover all exons.

    \ \

    \ This track collection contains nine bar chart tracks of RNA expression in the\ human heart where cells are grouped by cell type \ (Heart HCA Cells), age \ (Heart HCA Age), donor \ (Heart HCA Donor), region of the heart \ (Heart HCA Region),\ sample (Heart HCA Sample), sex \ (Heart HCA Sex), source \ (Heart HCA Source), cell\ state (Heart HCA State), \ and 10x chemistry version \ (Heart HCA Version). \ The default track displayed is \ Heart HCA Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    adipose
    fibroblast
    immune
    muscle
    lymphoid
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Heart HCA Cells subtrack, where the \ bars represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy heart tissues were obtained from 14 UK and North American transplant\ organ donors ages 40-75. Tissues were taken from deceased donors after\ circulatory death (DCD) and after brain death (DBD). To minimize\ transcriptional degradation, heart tissues were stored and transported on ice\ until freezing or tissue dissociation. Single nuclei were isolated from\ flash-frozen tissue using mechanical homogenization with a glass Dounce tissue\ grinder. Fresh heart tissues were enzymatically dissociated and automatically\ digested using gentleMACS Octo Dissociator. Next, Hoechst-positive single\ nuclei were FACS sorted prior to library preparation. In parallel, Cell\ suspensions from fresh heart tissue were enriched for CD45+ cells using MACS LS\ columns. Libraries of single cell and single nuclei were prepared using 10x\ Genomics 3' v2 or v3. 3' gene expression libraries were sequenced on an\ Illumina HiSeq4000 and NextSeq500. In total 45,870 cells, 78,023 CD45+ enriched\ cells, and 363,213 nuclei were profiled for 11 major cell types of the heart.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Monika Litviňuková, Carlos\ Talavera-Ló, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    References

    \

    \ Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\ Polanski K, Heinig M, Lee M et al.\ \ Cells of the adult human heart.\ Nature. 2020 Dec;588(7838):466-472.\ PMID: 32971526; PMC: PMC7681775\

    \ singleCell 1 barChartBars D1 D11 D2 D3 D4 D5 D6 D7 H2 H3 H4 H5 H6 H7\ barChartColors #c43483 #469615 #c53483 #c54868 #c63c79 #c3377e #9e7358 #b65e62 #c53186 #c12b90 #c22596 #c12498 #c22694 #c22794\ barChartLimit 4\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/heartCellAtlas/donor.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/heartCellAtlas/donor.bb\ defaultLabelFields name\ html heartCellAtlas\ labelFields name,name2\ longLabel Heart cell RNA binned by organ donor from https://heartcellatlas.org\ parent heartCellAtlas\ shortLabel Heart HCA Donor\ track heartAtlasDonor\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=heart-cell-atlas+global&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ heartAtlasRegion Heart HCA Region bigBarChart Heart cell RNA binned by region of collection from https://heartcellatlas.org 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=heart-cell-atlas+global&gene=$$

    Description

    \

    \ This track displays data from \ Cells of the adult human heart. Single-cell and single-nucleus RNA\ sequencing (RNA-seq) was used to profile transcriptomes from six regions of the heart:\ the interventricular septum (SP), apex (AX), left ventricle (LV), right\ ventricle (RV), left atrium (LA), and right atrium (RA). A total of 11 cardiac\ cell types were identified along with their marker genes after uniform manifold\ approximation and projection (UMAP) embedding of 487,106 cells. Note that the RNA-seq\ data is generated using Tag-sequencing (Tag-seq) and does not cover all exons.

    \ \

    \ This track collection contains nine bar chart tracks of RNA expression in the\ human heart where cells are grouped by cell type \ (Heart HCA Cells), age \ (Heart HCA Age), donor \ (Heart HCA Donor), region of the heart \ (Heart HCA Region),\ sample (Heart HCA Sample), sex \ (Heart HCA Sex), source \ (Heart HCA Source), cell\ state (Heart HCA State), \ and 10x chemistry version \ (Heart HCA Version). \ The default track displayed is \ Heart HCA Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    adipose
    fibroblast
    immune
    muscle
    lymphoid
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Heart HCA Cells subtrack, where the \ bars represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy heart tissues were obtained from 14 UK and North American transplant\ organ donors ages 40-75. Tissues were taken from deceased donors after\ circulatory death (DCD) and after brain death (DBD). To minimize\ transcriptional degradation, heart tissues were stored and transported on ice\ until freezing or tissue dissociation. Single nuclei were isolated from\ flash-frozen tissue using mechanical homogenization with a glass Dounce tissue\ grinder. Fresh heart tissues were enzymatically dissociated and automatically\ digested using gentleMACS Octo Dissociator. Next, Hoechst-positive single\ nuclei were FACS sorted prior to library preparation. In parallel, Cell\ suspensions from fresh heart tissue were enriched for CD45+ cells using MACS LS\ columns. Libraries of single cell and single nuclei were prepared using 10x\ Genomics 3' v2 or v3. 3' gene expression libraries were sequenced on an\ Illumina HiSeq4000 and NextSeq500. In total 45,870 cells, 78,023 CD45+ enriched\ cells, and 363,213 nuclei were profiled for 11 major cell types of the heart.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Monika Litviňuková, Carlos\ Talavera-Ló, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    References

    \

    \ Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\ Polanski K, Heinig M, Lee M et al.\ \ Cells of the adult human heart.\ Nature. 2020 Dec;588(7838):466-472.\ PMID: 32971526; PMC: PMC7681775\

    \ singleCell 1 barChartBars AX LA LV RA RV SP\ barChartColors #c13782 #c14d68 #c12596 #c14472 #c12696 #c02f8d\ barChartLimit 1.5\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/heartCellAtlas/region.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/heartCellAtlas/region.bb\ defaultLabelFields name\ html heartCellAtlas\ labelFields name,name2\ longLabel Heart cell RNA binned by region of collection from https://heartcellatlas.org\ parent heartCellAtlas\ shortLabel Heart HCA Region\ track heartAtlasRegion\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=heart-cell-atlas+global&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ heartAtlasSample Heart HCA Sample bigBarChart Heart cell RNA binned by biosample from https://heartcellatlas.org 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=heart-cell-atlas+global&gene=$$

    Description

    \

    \ This track displays data from \ Cells of the adult human heart. Single-cell and single-nucleus RNA\ sequencing (RNA-seq) was used to profile transcriptomes from six regions of the heart:\ the interventricular septum (SP), apex (AX), left ventricle (LV), right\ ventricle (RV), left atrium (LA), and right atrium (RA). A total of 11 cardiac\ cell types were identified along with their marker genes after uniform manifold\ approximation and projection (UMAP) embedding of 487,106 cells. Note that the RNA-seq\ data is generated using Tag-sequencing (Tag-seq) and does not cover all exons.

    \ \

    \ This track collection contains nine bar chart tracks of RNA expression in the\ human heart where cells are grouped by cell type \ (Heart HCA Cells), age \ (Heart HCA Age), donor \ (Heart HCA Donor), region of the heart \ (Heart HCA Region),\ sample (Heart HCA Sample), sex \ (Heart HCA Sex), source \ (Heart HCA Source), cell\ state (Heart HCA State), \ and 10x chemistry version \ (Heart HCA Version). \ The default track displayed is \ Heart HCA Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    adipose
    fibroblast
    immune
    muscle
    lymphoid
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Heart HCA Cells subtrack, where the \ bars represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy heart tissues were obtained from 14 UK and North American transplant\ organ donors ages 40-75. Tissues were taken from deceased donors after\ circulatory death (DCD) and after brain death (DBD). To minimize\ transcriptional degradation, heart tissues were stored and transported on ice\ until freezing or tissue dissociation. Single nuclei were isolated from\ flash-frozen tissue using mechanical homogenization with a glass Dounce tissue\ grinder. Fresh heart tissues were enzymatically dissociated and automatically\ digested using gentleMACS Octo Dissociator. Next, Hoechst-positive single\ nuclei were FACS sorted prior to library preparation. In parallel, Cell\ suspensions from fresh heart tissue were enriched for CD45+ cells using MACS LS\ columns. Libraries of single cell and single nuclei were prepared using 10x\ Genomics 3' v2 or v3. 3' gene expression libraries were sequenced on an\ Illumina HiSeq4000 and NextSeq500. In total 45,870 cells, 78,023 CD45+ enriched\ cells, and 363,213 nuclei were profiled for 11 major cell types of the heart.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Monika Litviňuková, Carlos\ Talavera-Ló, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    References

    \

    \ Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\ Polanski K, Heinig M, Lee M et al.\ \ Cells of the adult human heart.\ Nature. 2020 Dec;588(7838):466-472.\ PMID: 32971526; PMC: PMC7681775\

    \ singleCell 1 barChartBars H0015_LA_new H0015_LV H0015_RA H0015_RV H0015_apex H0015_septum H0020_LA_new H0020_LV H0020_RA H0020_RV H0020_apex H0020_septum H0025_LA H0025_LV H0025_RA H0025_RV H0025_apex H0025_septum H0026_LA H0026_LV_V3 H0026_RA H0026_RV H0026_apex H0026_septum2 H0035_LA H0035_LV H0035_RA H0035_RV H0035_apex H0035_septum H0037_Apex H0037_LA_corr H0037_LV H0037_RA_corr H0037_RV H0037_septum HCAHeart7606896 HCAHeart7656534 HCAHeart7656535 HCAHeart7656536 HCAHeart7656537 HCAHeart7656538 HCAHeart7656539 HCAHeart7664652 HCAHeart7664653 HCAHeart7664654 HCAHeart7698015 HCAHeart7698016 HCAHeart7698017 HCAHeart7702873 HCAHeart7702874 HCAHeart7702875 HCAHeart7702876 HCAHeart7702877 HCAHeart7702878 HCAHeart7702879 HCAHeart7702880 HCAHeart7702881 HCAHeart7702882 HCAHeart7728604 HCAHeart7728605 HCAHeart7728606 HCAHeart7728607 HCAHeart7728608 HCAHeart7728609 HCAHeart7745966 HCAHeart7745967 HCAHeart7745968 HCAHeart7745969 HCAHeart7745970 HCAHeart7751845 HCAHeart7757636 HCAHeart7757637 HCAHeart7757638 HCAHeart7757639 HCAHeart7829976 HCAHeart7829977 HCAHeart7829978 HCAHeart7829979 HCAHeart7833852 HCAHeart7833853 HCAHeart7833854 HCAHeart7833855 HCAHeart7835148 HCAHeart7835149 HCAHeart7836681 HCAHeart7836682 HCAHeart7836683 HCAHeart7836684 HCAHeart7843999 HCAHeart7844000 HCAHeart7844001 HCAHeart7844002 HCAHeart7844003 HCAHeart7844004 HCAHeart7850539 HCAHeart7850540 HCAHeart7850541 HCAHeart7850542 HCAHeart7850543 HCAHeart7850544 HCAHeart7850545 HCAHeart7850546 HCAHeart7850547 HCAHeart7850548 HCAHeart7850549 HCAHeart7850551 HCAHeart7880860 HCAHeart7880861 HCAHeart7880862 HCAHeart7880863 HCAHeart7888922 HCAHeart7888923 HCAHeart7888924 HCAHeart7888925 HCAHeart7888926 HCAHeart7888927 HCAHeart7888928 HCAHeart7888929 HCAHeart7905327 HCAHeart7905328 HCAHeart7905329 HCAHeart7905330 HCAHeart7905331 HCAHeart7905332 HCAHeart7964513 HCAHeart7985086 HCAHeart7985087 HCAHeart7985088 HCAHeart7985089 HCAHeart8102858 HCAHeart8102859 HCAHeart8102860 HCAHeart8102861 HCAHeart8102862 HCAHeart8102863 HCAHeart8102864 HCAHeart8102865 HCAHeart8102866 HCAHeart8102867 HCAHeart8102868 HCAHeart8287123 HCAHeart8287124 HCAHeart8287125 HCAHeart8287126 HCAHeart8287127 HCAHeart8287128\ barChartColors #c63682 #c12399 #c65169 #c12794 #c12498 #c12497 #cf5d48 #c22793 #c33f7b #c22695 #c12597 #c32b8f #c83e78 #c12992 #c43a7f #c12d8f #c12d8f #c03786 #cf5b4e #c32a90 #cb5b56 #c32d8b #c63581 #c42d8c #c22992 #c12597 #cd555c #c12993 #c32e8a #c13982 #c12498 #c9466b #c22694 #c8476c #c12497 #c12993 #85b660 #59850c #489210 #6d7611 #a4a063 #846816 #c22894 #c22793 #c42e8b #d15956 #c63e75 #c74172 #c63d77 #c73d77 #c53188 #c53188 #ca4f5a #ca4e5b #c63b78 #c63a7a #c32a91 #c63780 #c63a7c #e1cec2 #e0d2c5 #bf8d6b #c38f77 #7bbd5e #ebded6 #3e980c #83b75f #826716 #ae4719 #79be5d #45940f #e3948e #e8acc0 #e18e93 #ce4f60 #c8456c #cb476c #c53582 #c73f75 #c73f74 #c7466a #c73d77 #c7436f #c63a7b #c53187 #c73e76 #c6446d #c8466a #c73f74 #3e960a #ae4a1e #905c12 #d02f19 #af4c22 #896113 #389c0d #49900e #57860e #82650f #3c990d #40960d #a14f10 #bb4309 #cb3809 #c73a0a #ac480f #a84c0d #c43582 #c44467 #c4397d #c04b5b #c53188 #c43484 #c32a90 #c53681 #c22d8c #c22d8c #c22795 #c33385 #23ab08 #22ab09 #23aa08 #3a9b0b #16b306 #19b106 #c63c77 #cb594f #c42f8a #cf535d #c53583 #4a900c #4b910e #4f8e10 #3f970a #43950b #3e9a0f #29a70a #2ba60b #399d0d #1caf07 #3b9b0d #c43089 #c42d8d #d877ae #c12f8c #c13686 #c33685\ barChartLimit 4\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/heartCellAtlas/sample.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/heartCellAtlas/sample.bb\ defaultLabelFields name\ html heartCellAtlas\ labelFields name,name2\ longLabel Heart cell RNA binned by biosample from https://heartcellatlas.org\ parent heartCellAtlas\ shortLabel Heart HCA Sample\ track heartAtlasSample\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=heart-cell-atlas+global&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ heartAtlasSex Heart HCA Sex bigBarChart Heart cell RNA binned by sex of donor from https://heartcellatlas.org 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=heart-cell-atlas+global&gene=$$

    Description

    \

    \ This track displays data from \ Cells of the adult human heart. Single-cell and single-nucleus RNA\ sequencing (RNA-seq) was used to profile transcriptomes from six regions of the heart:\ the interventricular septum (SP), apex (AX), left ventricle (LV), right\ ventricle (RV), left atrium (LA), and right atrium (RA). A total of 11 cardiac\ cell types were identified along with their marker genes after uniform manifold\ approximation and projection (UMAP) embedding of 487,106 cells. Note that the RNA-seq\ data is generated using Tag-sequencing (Tag-seq) and does not cover all exons.

    \ \

    \ This track collection contains nine bar chart tracks of RNA expression in the\ human heart where cells are grouped by cell type \ (Heart HCA Cells), age \ (Heart HCA Age), donor \ (Heart HCA Donor), region of the heart \ (Heart HCA Region),\ sample (Heart HCA Sample), sex \ (Heart HCA Sex), source \ (Heart HCA Source), cell\ state (Heart HCA State), \ and 10x chemistry version \ (Heart HCA Version). \ The default track displayed is \ Heart HCA Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    adipose
    fibroblast
    immune
    muscle
    lymphoid
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Heart HCA Cells subtrack, where the \ bars represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy heart tissues were obtained from 14 UK and North American transplant\ organ donors ages 40-75. Tissues were taken from deceased donors after\ circulatory death (DCD) and after brain death (DBD). To minimize\ transcriptional degradation, heart tissues were stored and transported on ice\ until freezing or tissue dissociation. Single nuclei were isolated from\ flash-frozen tissue using mechanical homogenization with a glass Dounce tissue\ grinder. Fresh heart tissues were enzymatically dissociated and automatically\ digested using gentleMACS Octo Dissociator. Next, Hoechst-positive single\ nuclei were FACS sorted prior to library preparation. In parallel, Cell\ suspensions from fresh heart tissue were enriched for CD45+ cells using MACS LS\ columns. Libraries of single cell and single nuclei were prepared using 10x\ Genomics 3' v2 or v3. 3' gene expression libraries were sequenced on an\ Illumina HiSeq4000 and NextSeq500. In total 45,870 cells, 78,023 CD45+ enriched\ cells, and 363,213 nuclei were profiled for 11 major cell types of the heart.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Monika Litviňuková, Carlos\ Talavera-Ló, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    References

    \

    \ Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\ Polanski K, Heinig M, Lee M et al.\ \ Cells of the adult human heart.\ Nature. 2020 Dec;588(7838):466-472.\ PMID: 32971526; PMC: PMC7681775\

    \ singleCell 1 barChartBars Female Male\ barChartColors #c12794 #c13682\ barChartLimit 1\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/heartCellAtlas/sex.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/heartCellAtlas/sex.bb\ defaultLabelFields name\ html heartCellAtlas\ labelFields name,name2\ longLabel Heart cell RNA binned by sex of donor from https://heartcellatlas.org\ parent heartCellAtlas\ shortLabel Heart HCA Sex\ track heartAtlasSex\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=heart-cell-atlas+global&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ heartAtlasSource Heart HCA Source bigBarChart Heart cell RNA binned by source (nucleus vs whole cell) from https://heartcellatlas.org 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=heart-cell-atlas+global&gene=$$

    Description

    \

    \ This track displays data from \ Cells of the adult human heart. Single-cell and single-nucleus RNA\ sequencing (RNA-seq) was used to profile transcriptomes from six regions of the heart:\ the interventricular septum (SP), apex (AX), left ventricle (LV), right\ ventricle (RV), left atrium (LA), and right atrium (RA). A total of 11 cardiac\ cell types were identified along with their marker genes after uniform manifold\ approximation and projection (UMAP) embedding of 487,106 cells. Note that the RNA-seq\ data is generated using Tag-sequencing (Tag-seq) and does not cover all exons.

    \ \

    \ This track collection contains nine bar chart tracks of RNA expression in the\ human heart where cells are grouped by cell type \ (Heart HCA Cells), age \ (Heart HCA Age), donor \ (Heart HCA Donor), region of the heart \ (Heart HCA Region),\ sample (Heart HCA Sample), sex \ (Heart HCA Sex), source \ (Heart HCA Source), cell\ state (Heart HCA State), \ and 10x chemistry version \ (Heart HCA Version). \ The default track displayed is \ Heart HCA Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    adipose
    fibroblast
    immune
    muscle
    lymphoid
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Heart HCA Cells subtrack, where the \ bars represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy heart tissues were obtained from 14 UK and North American transplant\ organ donors ages 40-75. Tissues were taken from deceased donors after\ circulatory death (DCD) and after brain death (DBD). To minimize\ transcriptional degradation, heart tissues were stored and transported on ice\ until freezing or tissue dissociation. Single nuclei were isolated from\ flash-frozen tissue using mechanical homogenization with a glass Dounce tissue\ grinder. Fresh heart tissues were enzymatically dissociated and automatically\ digested using gentleMACS Octo Dissociator. Next, Hoechst-positive single\ nuclei were FACS sorted prior to library preparation. In parallel, Cell\ suspensions from fresh heart tissue were enriched for CD45+ cells using MACS LS\ columns. Libraries of single cell and single nuclei were prepared using 10x\ Genomics 3' v2 or v3. 3' gene expression libraries were sequenced on an\ Illumina HiSeq4000 and NextSeq500. In total 45,870 cells, 78,023 CD45+ enriched\ cells, and 363,213 nuclei were profiled for 11 major cell types of the heart.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Monika Litviňuková, Carlos\ Talavera-Ló, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    References

    \

    \ Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\ Polanski K, Heinig M, Lee M et al.\ \ Cells of the adult human heart.\ Nature. 2020 Dec;588(7838):466-472.\ PMID: 32971526; PMC: PMC7681775\

    \ singleCell 1 barChartBars CD45+ Cells Nuclei\ barChartColors #2da207 #1ab006 #c22695\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/heartCellAtlas/source.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/heartCellAtlas/source.bb\ defaultLabelFields name\ html heartCellAtlas\ labelFields name,name2\ longLabel Heart cell RNA binned by source (nucleus vs whole cell) from https://heartcellatlas.org\ parent heartCellAtlas\ shortLabel Heart HCA Source\ track heartAtlasSource\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=heart-cell-atlas+global&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ heartAtlasCellStates Heart HCA State bigBarChart Heart cell RNA binned by cell state from https://heartcellatlas.org 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=heart-cell-atlas+global&gene=$$

    Description

    \

    \ This track displays data from \ Cells of the adult human heart. Single-cell and single-nucleus RNA\ sequencing (RNA-seq) was used to profile transcriptomes from six regions of the heart:\ the interventricular septum (SP), apex (AX), left ventricle (LV), right\ ventricle (RV), left atrium (LA), and right atrium (RA). A total of 11 cardiac\ cell types were identified along with their marker genes after uniform manifold\ approximation and projection (UMAP) embedding of 487,106 cells. Note that the RNA-seq\ data is generated using Tag-sequencing (Tag-seq) and does not cover all exons.

    \ \

    \ This track collection contains nine bar chart tracks of RNA expression in the\ human heart where cells are grouped by cell type \ (Heart HCA Cells), age \ (Heart HCA Age), donor \ (Heart HCA Donor), region of the heart \ (Heart HCA Region),\ sample (Heart HCA Sample), sex \ (Heart HCA Sex), source \ (Heart HCA Source), cell\ state (Heart HCA State), \ and 10x chemistry version \ (Heart HCA Version). \ The default track displayed is \ Heart HCA Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    adipose
    fibroblast
    immune
    muscle
    lymphoid
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Heart HCA Cells subtrack, where the \ bars represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy heart tissues were obtained from 14 UK and North American transplant\ organ donors ages 40-75. Tissues were taken from deceased donors after\ circulatory death (DCD) and after brain death (DBD). To minimize\ transcriptional degradation, heart tissues were stored and transported on ice\ until freezing or tissue dissociation. Single nuclei were isolated from\ flash-frozen tissue using mechanical homogenization with a glass Dounce tissue\ grinder. Fresh heart tissues were enzymatically dissociated and automatically\ digested using gentleMACS Octo Dissociator. Next, Hoechst-positive single\ nuclei were FACS sorted prior to library preparation. In parallel, Cell\ suspensions from fresh heart tissue were enriched for CD45+ cells using MACS LS\ columns. Libraries of single cell and single nuclei were prepared using 10x\ Genomics 3' v2 or v3. 3' gene expression libraries were sequenced on an\ Illumina HiSeq4000 and NextSeq500. In total 45,870 cells, 78,023 CD45+ enriched\ cells, and 363,213 nuclei were profiled for 11 major cell types of the heart.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Monika Litviňuková, Carlos\ Talavera-Ló, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    References

    \

    \ Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\ Polanski K, Heinig M, Lee M et al.\ \ Cells of the adult human heart.\ Nature. 2020 Dec;588(7838):466-472.\ PMID: 32971526; PMC: PMC7681775\

    \ singleCell 1 barChartBars Adip1 Adip2 Adip3 Adip4 B_cells CD14+Mo CD16+Mo CD4+T_cytox CD4+T_tem CD8+T_cytox CD8+T_tem DC DOCK4+MØ1 DOCK4+MØ2 EC10_CMC-like EC1_cap EC2_cap EC3_cap EC4_immune EC5_art EC6_ven EC7_atria EC8_ln EC9_FB-like FB1 FB2 FB3 FB4 FB5 FB6 FB7 IL17RA+Mo LYVE1+MØ1 LYVE1+MØ2 LYVE1+MØ3 Mast Meso Mo_pi MØ_AgP MØ_mod NC1 NC2 NC3 NC4 NC5 NC6 NK NKT NØ PC1_vent PC2_atria PC3_str PC4_CMC-like SMC1_basic SMC2_art aCM1 aCM2 aCM3 aCM4 aCM5 doublets nan vCM1 vCM2 vCM3 vCM4 vCM5\ barChartColors #ef7f3e #ea7b3d #e87c40 #eb9d88 #c13e20 #cc3a0c #d63105 #e21e17 #d02d17 #e71a14 #a87052 #d62915 #d06946 #cf7046 #439918 #0db804 #0eb804 #10b604 #14b405 #11b604 #24a907 #b5734a #9c734c #c16036 #b7582f #b95a2e #b95e31 #b85c33 #b46239 #bb5b30 #c23876 #f3d3c8 #d93006 #b0754e #cb3b11 #c96848 #1494b3 #d73005 #d43408 #d23508 #e2aa14 #c8722b #b9ab74 #d66eb9 #e4b670 #edd9c6 #dc2315 #e31d15 #e0b09b #c45a4d #c35d48 #8d7848 #c22694 #b86756 #9d6b56 #c1229a #c12499 #c02c91 #c22a90 #d66dbb #d69f85 #c12792 #c1229a #c1229a #c22695 #c22696 #c1219b\ barChartLimit 4\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/heartCellAtlas/cell_states.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/heartCellAtlas/cell_states.bb\ defaultLabelFields name\ html heartCellAtlas\ labelFields name,name2\ longLabel Heart cell RNA binned by cell state from https://heartcellatlas.org\ parent heartCellAtlas\ shortLabel Heart HCA State\ track heartAtlasCellStates\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=heart-cell-atlas+global&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ heartAtlasVersion Heart HCA Version bigBarChart Heart cell RNA binned by 10x chemistry version from https://heartcellatlas.org 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=heart-cell-atlas+global&gene=$$

    Description

    \

    \ This track displays data from \ Cells of the adult human heart. Single-cell and single-nucleus RNA\ sequencing (RNA-seq) was used to profile transcriptomes from six regions of the heart:\ the interventricular septum (SP), apex (AX), left ventricle (LV), right\ ventricle (RV), left atrium (LA), and right atrium (RA). A total of 11 cardiac\ cell types were identified along with their marker genes after uniform manifold\ approximation and projection (UMAP) embedding of 487,106 cells. Note that the RNA-seq\ data is generated using Tag-sequencing (Tag-seq) and does not cover all exons.

    \ \

    \ This track collection contains nine bar chart tracks of RNA expression in the\ human heart where cells are grouped by cell type \ (Heart HCA Cells), age \ (Heart HCA Age), donor \ (Heart HCA Donor), region of the heart \ (Heart HCA Region),\ sample (Heart HCA Sample), sex \ (Heart HCA Sex), source \ (Heart HCA Source), cell\ state (Heart HCA State), \ and 10x chemistry version \ (Heart HCA Version). \ The default track displayed is \ Heart HCA Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    adipose
    fibroblast
    immune
    muscle
    lymphoid
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Heart HCA Cells subtrack, where the \ bars represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy heart tissues were obtained from 14 UK and North American transplant\ organ donors ages 40-75. Tissues were taken from deceased donors after\ circulatory death (DCD) and after brain death (DBD). To minimize\ transcriptional degradation, heart tissues were stored and transported on ice\ until freezing or tissue dissociation. Single nuclei were isolated from\ flash-frozen tissue using mechanical homogenization with a glass Dounce tissue\ grinder. Fresh heart tissues were enzymatically dissociated and automatically\ digested using gentleMACS Octo Dissociator. Next, Hoechst-positive single\ nuclei were FACS sorted prior to library preparation. In parallel, Cell\ suspensions from fresh heart tissue were enriched for CD45+ cells using MACS LS\ columns. Libraries of single cell and single nuclei were prepared using 10x\ Genomics 3' v2 or v3. 3' gene expression libraries were sequenced on an\ Illumina HiSeq4000 and NextSeq500. In total 45,870 cells, 78,023 CD45+ enriched\ cells, and 363,213 nuclei were profiled for 11 major cell types of the heart.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Monika Litviňuková, Carlos\ Talavera-Ló, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    References

    \

    \ Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\ Polanski K, Heinig M, Lee M et al.\ \ Cells of the adult human heart.\ Nature. 2020 Dec;588(7838):466-472.\ PMID: 32971526; PMC: PMC7681775\

    \ singleCell 1 barChartBars V2 V3\ barChartColors #c23a7b #c12e8d\ barChartLimit 1\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/heartCellAtlas/version.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/heartCellAtlas/version.bb\ defaultLabelFields name\ html heartCellAtlas\ labelFields name,name2\ longLabel Heart cell RNA binned by 10x chemistry version from https://heartcellatlas.org\ parent heartCellAtlas\ shortLabel Heart HCA Version\ track heartAtlasVersion\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=heart-cell-atlas+global&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ netHprcGCA_018504085v1 HG02080.mat netAlign GCA_018504085.1 chainHprcGCA_018504085v1 HG02080.mat HG02080.pri.mat.f1_v2 (May 2021 GCA_018504085.1_HG02080.pri.mat.f1_v2) HPRC project computed Chain Nets 1 100 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02080.mat HG02080.pri.mat.f1_v2 (May 2021 GCA_018504085.1_HG02080.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504085.1\ parent hprcChainNetViewnet off\ priority 84\ shortLabel HG02080.mat\ subGroups view=net sample=s084 population=eas subpop=khv hap=mat\ track netHprcGCA_018504085v1\ type netAlign GCA_018504085.1 chainHprcGCA_018504085v1\ hg38ContigDiff Hg19 Diff bed 9 . Contigs New to GRCh38/(hg38), Not Carried Forward from GRCh37/(hg19) 0 100 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/nuccore/$$

    Description

    \

    \ This track shows the differences between the GRCh38 (hg38) and previous GRCh37 (hg19)\ human genome assemblies, indicating contigs (or portions of contigs) that are new\ to the hg38 assembly.\

    \ \

    \ The following color/score key is used:\
    \
    \ \ \ \ \ \
    colorscorechange from hg19 to hg38
     0New contig added to\ hg38 to update sequence or fill gaps present in hg19
     500Different portions\ of this same contig used in the construction of hg38 and hg19 assemblies
     1000Updated version of\ an hg19 contig in which sequence errors have been corrected
    \

    \

    \ Use the score filter to select which categories to show in the display.\

    \ \

    Methods

    \

    \ The contig coordinates were extracted from the AGP files for both assemblies.\ Contigs that matched the same name, same version, and the same specific\ portion of sequence in both assemblies were considered identical between the two\ assemblies and were excluded from this data set. The remaining contigs are shown\ in this track.\

    \ \

    Credits

    \

    \ The data and presentation of this track were prepared by\ Hiram Clawson, UCSC Genome\ Browser engineering.\

    \ map 1 color 0,0,0\ group map\ itemRgb on\ longLabel Contigs New to GRCh38/(hg38), Not Carried Forward from GRCh37/(hg19)\ scoreFilterByRange on\ shortLabel Hg19 Diff\ track hg38ContigDiff\ type bed 9 .\ url https://www.ncbi.nlm.nih.gov/nuccore/$$\ urlLabel Genbank accession:\ visibility hide\ hgmd HGMD public bigBed 9 . Human Gene Mutation Database - Public Version Dec 2022 0 100 0 0 0 127 127 127 0 0 0 http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$P&accession=$p

    Description

    \ \
    \

    NOTE:
    \ HGMD public is intended for use primarily by physicians and other\ professionals concerned with genetic disorders, by genetics researchers, and\ by advanced students in science and medicine. While the HGMD public database is\ open to all academic users, users seeking information about a personal medical\ or genetic condition are urged to consult with a qualified physician for\ diagnosis and for answers to personal questions.

    \

    DOWNLOADS:
    \ As requested by Qiagen, this track is not available for download or mirroring but only for limited API queries, see below.\

    \ \

    \ This track shows the genomic positions of variants in the public version of the\ Human Gene Mutation Database (HGMD). \ UCSC does not host any further information and provides only the coordinates of\ mutations.\

    \ \

    \ To get details on a mutation (bibliographic reference, phenotype,\ disease, nucleotide change, etc.), follow the "Link to HGMD" at the top\ of the details page. Mouse over to show the type of variant (substitution, insertion,\ deletion, regulatory or splice variant). For deletions, only start coordinates are shown\ as the end coordinates have not been provided by HGMD. Insertions are located between the two\ annotated nucleic acids.\

    \ \

    \ The HGMD public database is produced at Cardiff University, but is free only\ for academic use. Academic users can register for a free account at the\ HGMD\ User Registration page. Download and commercial use requires a license for the HGMD Professional\ database, which also contains many mutations not yet added to the public version of HGMD public.\ The public version is usually 1-2 years behind the professional version.\

    \ \

    The HGMD database itself does not come with a mapping to genome coordinates,\ but there is a related product called "GenomeTrax" which includes HGMD in the\ UCSC Custom Track format. Contact Qiagen for more information.

    \ \

    Batch queries

    \

    Due to license restrictions, the HGMD data is not available for download or for batch queries in the Table Browser. \ However, it is available for programmatic access via the Global\ Alliance Beacon API, a web service that accepts queries in the form\ (genome, chromosome, position, allele) and returns "true" or "false" depending on whether there\ is information about this allele in the database. For more details see our \ Beacon Server.

    \

    Subscribers of the HGMD database can also download the full database or use the HGMD API to retrieve full details, please contact Qiagen support\ for further information. Academic or non-profit users may be able to obtain a\ limited version of HGMD public from Qiagen.

    \ \

    Display Conventions and Configuration

    \ \

    \ Genomic locations of HGMD variants are labeled with the gene symbol\ and the accession of the mutation, separated by a colon. All other information\ is shown on the respective HGMD variation page, accessible via the\ "Link to HGMD" at the top of the details page.\

    \ \

    HGMD variants are originally annotated on RefSeq transcripts. You can show\ all and only those transcripts annotated by HGMD by activating the HGMD\ subtrack of the track "NCBI RefSeq".

    \ \

    Methods

    \ \

    \ The mappings displayed on this track were obtained from Qiagen\ and reformatted at UCSC as a bigBed file.\

    \ \

    Credits

    \ \

    \ Thanks to HGMD, Frank Schacherer and Rupert Yip from Qiagen for making these data available.\

    \ \

    References

    \ \

    \ Stenson PD, Mort M, Ball EV, Shaw K, Phillips A, Cooper DN.\ \ The Human Gene Mutation Database: building a comprehensive mutation repository for clinical and\ molecular genetics, diagnostic testing and personalized genomic medicine.\ Hum Genet. 2014 Jan;133(1):1-9.\ PMID: 24077912; PMC: PMC3898141\

    \ phenDis 1 bigDataUrl /gbdb/hg38/bbi/hgmd.bb\ group phenDis\ itemRgb on\ longLabel Human Gene Mutation Database - Public Version Dec 2022\ maxItems 1000\ maxWindowCoverage 10000000\ mouseOverField variantType\ noScoreFilter on\ shortLabel HGMD public\ tableBrowser off hgmd\ track hgmd\ type bigBed 9 .\ url http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$P&accession=$p\ urlLabel Link to HGMD\ visibility hide\ hgnc HGNC bigBed 9 + HUGO Gene Nomenclature 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The HGNC is \ responsible for approving unique symbols and names for human loci, including protein \ coding genes, ncRNA genes and pseudogenes, to allow unambiguous scientific communication.\

    \ For each known human gene, the HGNC approves a gene name and symbol (short-form abbreviation).\ All approved symbols are stored in the HGNC database, www.genenames.org, a curated online repository of HGNC-approved gene \ nomenclature, gene groups and associated resources including links to genomic, proteomic, \ and phenotypic information. Each symbol is unique and we ensure that each gene is only \ given one approved gene symbol. It is necessary to provide a unique symbol for each gene \ so that we and others can talk about them, and this also facilitates electronic data \ retrieval from publications and databases. In preference, each symbol maintains \ parallel construction in different members of a gene family and can also be \ used in other species, especially other vertebrates including mouse.\ \

    Data Access

    \

    \ The raw data can be explored interactively with the Table Browser, or the Data Integrator. For computational analysis, genome annotations are stored in\ a bigBigFile file that can be downloaded from the\ download\ server. Regional or genome-wide annotations can be converted from binary data to human readable\ text using our command line utility bigBedToBed which can be compiled from source code or\ downloaded as a precompiled binary for your system. Files and instructions can be found in the\ utilities directory.\ \ The utility can be used to obtain features within a given range, for example:

    \ bigBedToBed -chrom=chr6 -start=0 -end=1000000 http://hgdownload.soe.ucsc.edu/gbdb/hg38/hgnc/hgnc.bb stdout\ \

    \ \

    \ Please refer to our Data Access FAQ\ for more information or our mailing list for archived user questions.

    \ \

    Credits

    \

    \ HGNC Database, HUGO Gene Nomenclature Committee (HGNC), European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom www.genenames.org.\ \

    References

    \

    \ Tweedie S, Braschi B, Gray KA, Jones TEM, Seal RL, Yates B, Bruford EA. Genenames.org: the HGNC and VGNC resources in 2021. Nucleic Acids Res. PMID: 33152070 PMCID: PMC7779007 DOI: 10.1093/nar/gkaa980\

    \ genes 1 bigDataUrl /gbdb/hg38/hgnc/hgnc.bb\ defaultLabelFields symbol\ filterValues.locus_type RNA Y,RNA cluster,RNA long non-coding,RNA micro,RNA misc,RNA ribosomal,RNA small nuclear,RNA small nucleolar,RNA transfer,RNA vault,T cell receptor gene,T cell receptor pseudogene,complex locus constituent,endogenous retrovirus,fragile site,gene with protein product,immunoglobulin gene,immunoglobulin pseudogene,locus_type,protocadherin,pseudogene,readthrough,region,unknown,virus integration site,\ group genes\ itemRgb on\ labelFields symbol, geneName, name, uniprot_ids, ensembl_gene_id, ucsc_id, refseq_accession\ longLabel HUGO Gene Nomenclature\ mouseOver Symbol:$symbol; $name, Alias symbol: $alias_symbol; Previous symbols:$prev_symbol\ noScoreFilter on\ searchIndex name\ searchTrix /gbdb/hg38/hgnc/search.ix\ shortLabel HGNC\ skipEmptyFields on\ track hgnc\ type bigBed 9 +\ hicAndMicroC Hi-C and Micro-C hic Comparison of Micro-C and In situ Hi-C protocols in H1-hESC and HFFc6 0 100 0 0 0 127 127 127 0 0 0

    \

    Description

    \ These tracks provide heatmaps of chromatin folding data from in situ Hi-C and Micro-C XL \ experiments on the H1-hESC (embryonic stem cells) and HFFc6 (foreskin fibroblasts) cell lines\ (Krietenstein et al., 2020). \ The data indicate how many interactions were detected between regions of the genome. \ A high score between two regions suggests that they are\ probably in close proximity in 3D space within the nucleus of a cell. In the track display, this is\ shown by a more intense color in the heatmap.\

    \

    Display Conventions

    \ This is a composite track with data from experiments that compare two protocols on each of two cell\ lines. Individual subtrack settings can be adjusted by clicking the wrench next to the subtrack\ name, and all subtracks can be configured simultaneously using the track controls at the top of the\ page. Note that some controls (specifically, resolution and normalization options) are only\ available in the subtrack-specific configuration. The proximity data in these tracks are displayed\ as heatmaps, with high scores (and more intense colors) corresponding to closer proximity.\

    \

    Draw modes

    \ There are three display methods available for Hi-C tracks: square, triangle, and arc.
    \ \

    \ Square mode provides a traditional Hi-C display in which chromosome positions are mapped along the\ top-left-to-bottom-right diagonal, and interaction values are plotted on both sides of that diagonal\ to form a square. The upper-left corner of the square corresponds to the left-most position of the\ window in view, while the bottom-right corner corresponds to the right-most position of the window.\

    \ The color shade at any point within the square shows the proximity score for two genomic regions:\ the region where a vertical line drawn from that point intersects with the diagonal, and the region\ where a horizontal line from that point intersects with the diagonal. A point directly on the\ diagonal shows the score for how proximal a region is to itself (scores on the diagonal are usually\ quite high unless no data are available). A point at the extreme bottom left of the square shows the\ score for how proximal the left-most position within the window is to the right-most position within\ the window.\

    \ In triangle mode, the display is quite similar to square except that only the top half of the square\ is drawn (eliminating the redundancy), and the image is rotated so that the diagonal of the square\ now lies on the horizontal axis. This display consumes less vertical space in the image, although it\ may be more difficult to ascertain exactly which positions correspond to a point within the\ triangle.\

    \ In arc mode, simple arcs are drawn between the centers of interacting regions. The color of each arc\ corresponds to the proximity score. Self-interactions are not displayed.\

    \

    Score normalization settings

    \ Score values for this type of display correspond to how close two genomic regions are in 3D space.\ A high score indicates more links were formed between them in the experiment, which suggests that\ the regions are near to each other. A low score suggests that the regions are farther apart. High\ scores are displayed with a more intense color value; low scores are displayed in paler shades.\

    \ There are four score values available in this display: NONE, VC, VC_SQRT, and KR. NONE provides raw,\ un-normalized counts for the number of interactions between regions. VC, or Vanilla Coverage,\ normalization (Lieberman-Aiden et al., 2009) and the VC_SQRT variant normalize these count\ values based on the overall count values for each of the two interacting regions. Knight-Ruiz, or\ KR, matrix balancing (Knight and Ruiz, 2013) provides an alternative normalization method where the\ row and column sums of the contact matrix equal 1.\

    \ Color intensity in the heatmap goes up to indicate higher scores, but eventually saturates at a\ maximum beyond which all scores share the same color intensity. The value of this maximum score for\ saturation can be set manually by un-checking the "Auto-scale" box. When the\ "Auto-scale" box is checked, it automatically sets the saturation maximum to be double\ (2x) the median score in the current display window.\

    \

    Resolution settings

    \ The resolution for each track is measured in base pairs and represents the size of the bins into\ which proximity data are gathered. The list of available resolutions ranges from 1kb to 10MB. There\ is also an "Auto" setting, which attempts to use the coarsest resolution that still\ displays at least 500 bins in the current window.\

    \

    Methods

    \ Cells from the H1-hESC and HFFc6 cell lines were processed using two protocols and submitted to\ the 4D Nucleome Data Coordination and Integration Center (4D Nucleome). The data from the experimental replicates were then combined\ to create a contact matrix for each cell line, which was then processed to create binary\ heatmap files like the .hic files used by this track.\

    \ The first protocol, in situ Hi-C, was published in 2014 as a technique for obtaining full-genome\ proximity data while keeping the cell nucleus intact (Rao et al., 2014). This method uses a\ restriction enzyme to cleave DNA before linking. The second protocol, Micro-C XL, is an update to\ the Micro-C method of obtaining chromatin conformation data (Hsieh et al., 2016, Hsieh\ et al., 2015), and has largely supplanted the original. Both the original Micro-C and the\ updated version are variants of Hi-C chromatin conformation capture that use micrococcal nuclease to\ segment the genome before linking. This results in data sets with resolution down to the nucleosome\ level. The original Micro-C method had difficulty recovering higher order interactions, and the\ updated protocol makes use of additional cross-linking chemicals to address that issue.\

    \ We downloaded the .hic contact matrix files with the following accessions from the 4D Nucleome\ Data Portal:\ 4DNFI18Q799K,\ 4DNFI2TK7L2F,\ 4DNFIFLJLIS5, and\ 4DNFIQYQWPF5.\ The files are parsed for display using the Straw library from the Aiden lab at Baylor College\ of Medicine.\

    \

    Data Access

    \ The data for this track can be explored interactively with the Table Browser in the\ interact format. Direct access to the raw data files\ in .hic format can be obtained from the 4D Nucleome Data Portal at the URL provided in the Methods\ section or from our own download server. The following files for this track can be found in the\ /gbdb/hg38/hic/\ subdirectory: 4DNFI18Q799K.hic, 4DNFI2TK7L2F.hic, 4DNFIFLJLIS5.hic, 4DNFIQYQWPF5.hic. The name\ of each file corresponds to its identifier at the Data Portal. Details on working with .hic files\ can be found at https://www.aidenlab.org/documentation.html.\

    \

    References

    \ Hsieh TS, Fudenberg G, Goloborodko A, Rando OJ.\ \ Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genome.\ Nat Methods. 2016 Dec;13(12):1009-1011.\ PMID: 27723753\

    \ Knight P, Ruiz D.\ \ A fast algorithm for matrix balancing.\ IMA J Numer Anal. 2013 Jul;33(3):1029-1047.\

    \ Krietenstein N, Abraham S, Venev SV, Abdennur N, Gibcus J, Hsieh TS, Parsi KM, Yang L, Maehr R,\ Mirny LA et al.\ \ Ultrastructural Details of Mammalian Chromosome Architecture.\ Mol Cell. 2020 May 7;78(3):554-565.e7.\ PMID: 32213324\

    \ Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR,\ Sabo PJ, Dorschner MO et al.\ \ Comprehensive mapping of long-range interactions reveals folding principles of the human genome.\ Science. 2009 Oct 9;326(5950):289-93.\ PMID: 19815776; PMC: PMC2858594\

    \ Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD,\ Lander ES et al.\ \ A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.\ Cell. 2014 Dec 18;159(7):1665-80.\ PMID: 25497547; PMC: PMC5635824\

    \ regulation 1 compositeTrack on\ group regulation\ longLabel Comparison of Micro-C and In situ Hi-C protocols in H1-hESC and HFFc6\ shortLabel Hi-C and Micro-C\ track hicAndMicroC\ type hic\ highlyReproducible Highly Reproducible Regions bed 3 Highly Reproducible genomic regions for sequencing 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ This container track helps call out sections of the genome that often cause problems or\ confusion when working with the genome. There are three subtracks for now, Anshul Kundaje's\ ENCODE Blacklist, GRC (Genome Reference Consortium) Exclusions, and the UCSC\ Unusual Regions track.\

    \ \

    The hg19 genome has a track with the same name, but with many more\ subtracks, as the GeT-RM and Genome-in-a-Bottle artifact variants do not exist yet\ for hg38, to our knowledge. If you are missing a track here that you know from\ hg19 and have an idea how to add it hg38, do not hesitate to contact us.

    \ \

    \ The Problematic Regions track contains the following subtracks:\

      \
    • \ The UCSC Unusual Regions subtrack contains annotations collected at UCSC, \ put together from other tracks, our experiences and support email list\ requests over the years. For example, it contains the most well-known gene\ clusters (IGH, IGL, PAR1/2, TCRA, TCRB, etc) and annotations for the GRC\ fixed sequences, alternate haplotypes, unplaced\ contigs, pseudo-autosomal regions, and mitochondria. These loci can yield alignments with\ low-quality mapping scores and discordant read pairs, especially for short-read sequencing data.\ This data set was manually curated, based on the Genome Browser's\ assembly description, the FAQs about assembly, and the\ NCBI RefSeq "other" annotations\ track data.\
      • \ \
    • \ The ENCODE Blacklist subtrack contains a comprehensive set of regions which are troublesome\ for high-throughput Next-Generation Sequencing (NGS) aligners. These regions tend to have a very\ high ratio of multi-mapping to unique mapping reads and high variance in mappability due to\ repetitive elements such as satellite, centromeric and telomeric repeats. \
      • \ \
    • \ The GRC Exclusions subtrack contains a set of regions that have been flagged by the GRC to\ contain false duplications or contamination sequences. The GRC has now removed these sequences from\ the files that it uses to generate the reference assembly, however, removing the sequences from the\ GRCh38/hg38 assembly would trigger the next major release of the human assembly. In order to\ help users recognize these regions and avoid them in their analyses, the GRC have produced a masking\ file to be used as a companion to GRCh38, and the BED file is available from the\ GenBank FTP site.\
      • \
    \ \

    \ The Highly Reproducible Regions track highlights regions and variants\ from eight samples that can be used to assess variant detection pipelines. The\ "Highly Reproducible Regions" subtrack comprises the intersection of the reproducible\ regions across all eight samples, while the "Variants" subtracks contain the reproducible\ variants from each assayed sample. Both tracks contain data from the following samples:\

    \
      \
    • a Chinese Quartet, samples CQ-5, CQ-6, CQ-7, CQ-8
      • \
    • a HapMap Trio, samples NA10385, NA12248, NA12249
      • \
    • a Genome in a Bottle sample, NA12878s
      • \
    \ \ Please refer to the Pan et al reference for more information on how\ these regions were defined.\

    \ \

    Display Conventions and Configuration

    \ \

    \ Each track contains a set of regions of varying length with no special configuration options. \ The UCSC Unusual Regions track has a mouse-over description, all other tracks have at most\ a name field, which can be shown in pack mode. The tracks are usually kept in dense mode.\

    \ \

    \ The Hide empty subtracks control hides subtracks with no data in the browser window.\ Changing the browser window by zooming or scrolling may result in the display of a different\ selection of tracks.\

    \ \

    Data access

    \

    \ The raw data can be explored interactively with the Table Browser\ or the Data Integrator.\ \

    \ For automated download and analysis, the genome annotation is stored in bigBed files that\ can be downloaded from\ our download server.\ Individual\ regions or the whole genome annotation can be obtained using our tool bigBedToBed\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool\ can also be used to obtain only features within a given range, e.g. \
    \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/problematic/comments.bb -chrom=chr21 -start=0 -end=100000000 stdout

    \

    \ \

    \

    Methods

    \ \

    \ Files were downloaded from the respective databases and converted to bigBed format.\ The procedure is documented in our\ hg38 makeDoc file.\

    \ \

    Credits

    \

    \ Thanks to Anna Benet-Pagès, Max Haeussler, Angie Hinrichs, Daniel Schmelter, and Jairo\ Navarro at the UCSC Genome Browser for planning, building, and testing these tracks. The\ underlying data comes from the\ ENCODE Blacklist and some parts were copied manually from the HGNC and NCBI\ RefSeq tracks.\

    \ \

    References

    \

    \ Amemiya HM, Kundaje A, Boyle AP.\ \ The ENCODE Blacklist: Identification of Problematic Regions of the Genome.\ Sci Rep. 2019 Jun 27;9(1):9354.\ PMID: 31249361; PMC: PMC6597582\

    \ \

    \ Pan B, Ren L, Onuchic V, Guan M, Kusko R, Bruinsma S, Trigg L, Scherer A, Ning B, Zhang C et\ al.\ \ Assessing reproducibility of inherited variants detected with short-read whole genome\ sequencing.\ Genome Biol. 2022 Jan 3;23(1):2.\ PMID: 34980216; PMC: PMC8722114\

    \ map 1 compositeTrack on\ html problematic\ longLabel Highly Reproducible genomic regions for sequencing\ parent problematicSuper\ shortLabel Highly Reproducible Regions\ subGroup1 view Views beds=Regions vcfs=Variants\ track highlyReproducible\ type bed 3\ visibility hide\ highReproBeds Highly Reproducible Regions bigBed 9 + Highly Reproducible Regions 1 100 0 0 0 127 127 127 0 0 0 map 1 longLabel Highly Reproducible Regions\ parent highlyReproducible\ shortLabel Highly Reproducible Regions\ track highReproBeds\ type bigBed 9 +\ view beds\ visibility dense\ highReproVcfs Highly Reproducible Variants vcfTabix Highly Reproducible Variants 0 100 0 0 0 127 127 127 0 0 0 map 1 hideEmptySubtracks on\ longLabel Highly Reproducible Variants\ parent highlyReproducible\ shortLabel Highly Reproducible Variants\ track highReproVcfs\ type vcfTabix\ view vcfs\ visibility hide\ hprcDecomposed HPRC All Variants vcfTabix HPRC variants decomposed from hprc-v1.0-mc.grch38.vcfbub.a100k.wave.vcf.gz (Liao et al 2023), no size filtering 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ This track shows short nucleotide variants of a few base pairs when aligning\ HPRC genomes to the hg38 reference assembly. The alignment was made with the\ Minigraph-cactus approach described in the references below.\

    \ \

    There are three subtracks in this superTrack:\

      \
    1. All short variants up to 50bp, without any length filter\
    2. All short variants <= 3 bp long\
    3. All short variants > 3 bp long\

    \ \

    \ VCF Decomposition from\ HPRC Pangenome Resources Github:\ "The Raw VCF files contain a site for each bubble in the graph. Nested bubbles will result in\ overlapping sites. The nesting relationships are denoted with the PS (parent snarl), LV (level) and\ AT (allele traversal) tags and need to be taken into account when interpreting the VCF.\ Alternatively, you can use the 'Decomposed VCFs' which have been normalized by using\ vcfbub to 'pop'\ bubbles with alleles larger than 100k and\ vcfwave\ to realign each alt\ (script). Note that in order to reproduce the PanGenie analyses from the papers, you should instead\ use the\ PanGenie HPRC Workflow. This workflow has a\ CHM13 branch to use when working with that reference.\

    \ The exact tools and commands used to produce the VCFs are given\ here."

    \ \

    Display Conventions and Configuration

    \

    \ The Name of the items are the pair of node labels that denote the site's location\ in the graph, with the '>' and '<' denoting the forward and reverse\ orientation of the node. Mouseover on items in "squish" and "pack" modes shows the items Name and\ Genotypes. Mouseover on items in "full" mode shows Alleles.\ \

    Methods

    \

    \ The Minigraph-Cactus HPRC v1.0 graph was converted to VCF using vg deconstruct.\ This result was further postprocessed using vcfbub to flatten nested sites then\ vcfwave to normalize by realigning alt alleles to the reference. All steps are\ described in Hickey et al 2023. The postprocessing command lines and data can be found on\ Github.\ Finally, the resulting VCF was filtered by length and split into two VCFs using a cutoff of 3bp.\

    \ \

    Credits

    \

    \ Thanks to Glenn Hickey for providing the HAL file from the HPRC project and for making these VCFs from them.\

    \ \

    References

    \

    \ Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q,\ Xie D, Feng S, Stiller J\ et al.\ \ Progressive Cactus is a multiple-genome aligner for the thousand-genome era.\ Nature. 2020 Nov;587(7833):246-251.\ PMID: 33177663;\ PMC: PMC7673649;\ DOI: 10.1038/s41586-020-2871-y\

    \ \

    \ Glenn Hickey, Jean Monlong, Jana Ebler, Adam M Novak, Jordan M Eizenga,\ Yan Gao; Human Pangenome Reference Consortium; Tobias Marschall, Heng Li,\ Benedict Paten\ \ Pangenome graph construction from genome alignments with Minigraph-Cactus.\ Nature Biotechnology. 2023 May 10. doi: 10.1038/s41587-023-01793-w.\ PMID: 37165083;\ DOI: 10.1038/s41587-023-01793-w\

    \ \

    \ Paten B, Earl D, Nguyen N, Diekhans M, Zerbino D, Haussler D.\ \ Cactus: Algorithms for genome multiple sequence alignment.\ Genome Res. 2011 Sep;21(9):1512-28.\ PMID: 21665927;\ PMC: PMC3166836;\ DOI: 10.1101/gr.123356.111\

    \ \

    \ Wen-Wei Liao, Mobin Asri, Jana Ebler, ...et al, Heng Lin,\ Benedict Paten\ \ A draft human pangenome reference.\ Nature. 2023 May;617(7960):312-324.\ PMID: 37165242;\ PMC: PMC1017212;\ DOI: 10.1038/s41586-023-05896-x\

    \ hprc 1 bigDataUrl /gbdb/hg38/hprc/decomposed.vcf.gz\ configureByPopup off\ dataVersion August 2023\ html hprcVCF\ longLabel HPRC variants decomposed from hprc-v1.0-mc.grch38.vcfbub.a100k.wave.vcf.gz (Liao et al 2023), no size filtering\ maxWindowToDraw 200000\ parent hprcVCF\ shortLabel HPRC All Variants\ showHardyWeinberg on\ track hprcDecomposed\ type vcfTabix\ visibility hide\ hprcVCFDecomposedUnder4 HPRC Variants <= 3bp vcfTabix HPRC VCF variants filtered for items size <= 3bp 3 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ This track shows short nucleotide variants of a few base pairs when aligning\ HPRC genomes to the hg38 reference assembly. The alignment was made with the\ Minigraph-cactus approach described in the references below.\

    \ \

    There are three subtracks in this superTrack:\

      \
    1. All short variants up to 50bp, without any length filter\
    2. All short variants <= 3 bp long\
    3. All short variants > 3 bp long\

    \ \

    \ VCF Decomposition from\ HPRC Pangenome Resources Github:\ "The Raw VCF files contain a site for each bubble in the graph. Nested bubbles will result in\ overlapping sites. The nesting relationships are denoted with the PS (parent snarl), LV (level) and\ AT (allele traversal) tags and need to be taken into account when interpreting the VCF.\ Alternatively, you can use the 'Decomposed VCFs' which have been normalized by using\ vcfbub to 'pop'\ bubbles with alleles larger than 100k and\ vcfwave\ to realign each alt\ (script). Note that in order to reproduce the PanGenie analyses from the papers, you should instead\ use the\ PanGenie HPRC Workflow. This workflow has a\ CHM13 branch to use when working with that reference.\

    \ The exact tools and commands used to produce the VCFs are given\ here."

    \ \

    Display Conventions and Configuration

    \

    \ The Name of the items are the pair of node labels that denote the site's location\ in the graph, with the '>' and '<' denoting the forward and reverse\ orientation of the node. Mouseover on items in "squish" and "pack" modes shows the items Name and\ Genotypes. Mouseover on items in "full" mode shows Alleles.\ \

    Methods

    \

    \ The Minigraph-Cactus HPRC v1.0 graph was converted to VCF using vg deconstruct.\ This result was further postprocessed using vcfbub to flatten nested sites then\ vcfwave to normalize by realigning alt alleles to the reference. All steps are\ described in Hickey et al 2023. The postprocessing command lines and data can be found on\ Github.\ Finally, the resulting VCF was filtered by length and split into two VCFs using a cutoff of 3bp.\

    \ \

    Credits

    \

    \ Thanks to Glenn Hickey for providing the HAL file from the HPRC project and for making these VCFs from them.\

    \ \

    References

    \

    \ Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q,\ Xie D, Feng S, Stiller J\ et al.\ \ Progressive Cactus is a multiple-genome aligner for the thousand-genome era.\ Nature. 2020 Nov;587(7833):246-251.\ PMID: 33177663;\ PMC: PMC7673649;\ DOI: 10.1038/s41586-020-2871-y\

    \ \

    \ Glenn Hickey, Jean Monlong, Jana Ebler, Adam M Novak, Jordan M Eizenga,\ Yan Gao; Human Pangenome Reference Consortium; Tobias Marschall, Heng Li,\ Benedict Paten\ \ Pangenome graph construction from genome alignments with Minigraph-Cactus.\ Nature Biotechnology. 2023 May 10. doi: 10.1038/s41587-023-01793-w.\ PMID: 37165083;\ DOI: 10.1038/s41587-023-01793-w\

    \ \

    \ Paten B, Earl D, Nguyen N, Diekhans M, Zerbino D, Haussler D.\ \ Cactus: Algorithms for genome multiple sequence alignment.\ Genome Res. 2011 Sep;21(9):1512-28.\ PMID: 21665927;\ PMC: PMC3166836;\ DOI: 10.1101/gr.123356.111\

    \ \

    \ Wen-Wei Liao, Mobin Asri, Jana Ebler, ...et al, Heng Lin,\ Benedict Paten\ \ A draft human pangenome reference.\ Nature. 2023 May;617(7960):312-324.\ PMID: 37165242;\ PMC: PMC1017212;\ DOI: 10.1038/s41586-023-05896-x\

    \ hprc 1 bigDataUrl /gbdb/hg38/hprc/decomposedUnder4.vcf.gz\ configureByPopup off\ dataVersion August 2023\ html hprcVCF\ longLabel HPRC VCF variants filtered for items size <= 3bp\ maxWindowToDraw 200000\ parent hprcVCF\ shortLabel HPRC Variants <= 3bp\ showHardyWeinberg on\ track hprcVCFDecomposedUnder4\ type vcfTabix\ visibility pack\ hprcVCFDecomposedOver3 HPRC Variants > 3bp vcfTabix HPRC VCF variants filtered for items size > 3bp 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ This track shows short nucleotide variants of a few base pairs when aligning\ HPRC genomes to the hg38 reference assembly. The alignment was made with the\ Minigraph-cactus approach described in the references below.\

    \ \

    There are three subtracks in this superTrack:\

      \
    1. All short variants up to 50bp, without any length filter\
    2. All short variants <= 3 bp long\
    3. All short variants > 3 bp long\

    \ \

    \ VCF Decomposition from\ HPRC Pangenome Resources Github:\ "The Raw VCF files contain a site for each bubble in the graph. Nested bubbles will result in\ overlapping sites. The nesting relationships are denoted with the PS (parent snarl), LV (level) and\ AT (allele traversal) tags and need to be taken into account when interpreting the VCF.\ Alternatively, you can use the 'Decomposed VCFs' which have been normalized by using\ vcfbub to 'pop'\ bubbles with alleles larger than 100k and\ vcfwave\ to realign each alt\ (script). Note that in order to reproduce the PanGenie analyses from the papers, you should instead\ use the\ PanGenie HPRC Workflow. This workflow has a\ CHM13 branch to use when working with that reference.\

    \ The exact tools and commands used to produce the VCFs are given\ here."

    \ \

    Display Conventions and Configuration

    \

    \ The Name of the items are the pair of node labels that denote the site's location\ in the graph, with the '>' and '<' denoting the forward and reverse\ orientation of the node. Mouseover on items in "squish" and "pack" modes shows the items Name and\ Genotypes. Mouseover on items in "full" mode shows Alleles.\ \

    Methods

    \

    \ The Minigraph-Cactus HPRC v1.0 graph was converted to VCF using vg deconstruct.\ This result was further postprocessed using vcfbub to flatten nested sites then\ vcfwave to normalize by realigning alt alleles to the reference. All steps are\ described in Hickey et al 2023. The postprocessing command lines and data can be found on\ Github.\ Finally, the resulting VCF was filtered by length and split into two VCFs using a cutoff of 3bp.\

    \ \

    Credits

    \

    \ Thanks to Glenn Hickey for providing the HAL file from the HPRC project and for making these VCFs from them.\

    \ \

    References

    \

    \ Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q,\ Xie D, Feng S, Stiller J\ et al.\ \ Progressive Cactus is a multiple-genome aligner for the thousand-genome era.\ Nature. 2020 Nov;587(7833):246-251.\ PMID: 33177663;\ PMC: PMC7673649;\ DOI: 10.1038/s41586-020-2871-y\

    \ \

    \ Glenn Hickey, Jean Monlong, Jana Ebler, Adam M Novak, Jordan M Eizenga,\ Yan Gao; Human Pangenome Reference Consortium; Tobias Marschall, Heng Li,\ Benedict Paten\ \ Pangenome graph construction from genome alignments with Minigraph-Cactus.\ Nature Biotechnology. 2023 May 10. doi: 10.1038/s41587-023-01793-w.\ PMID: 37165083;\ DOI: 10.1038/s41587-023-01793-w\

    \ \

    \ Paten B, Earl D, Nguyen N, Diekhans M, Zerbino D, Haussler D.\ \ Cactus: Algorithms for genome multiple sequence alignment.\ Genome Res. 2011 Sep;21(9):1512-28.\ PMID: 21665927;\ PMC: PMC3166836;\ DOI: 10.1101/gr.123356.111\

    \ \

    \ Wen-Wei Liao, Mobin Asri, Jana Ebler, ...et al, Heng Lin,\ Benedict Paten\ \ A draft human pangenome reference.\ Nature. 2023 May;617(7960):312-324.\ PMID: 37165242;\ PMC: PMC1017212;\ DOI: 10.1038/s41586-023-05896-x\

    \ hprc 1 bigDataUrl /gbdb/hg38/hprc/decomposedOver3.vcf.gz\ configureByPopup off\ dataVersion August 2023\ html hprcVCF\ longLabel HPRC VCF variants filtered for items size > 3bp\ maxWindowToDraw 200000\ parent hprcVCF\ shortLabel HPRC Variants > 3bp\ showHardyWeinberg on\ track hprcVCFDecomposedOver3\ type vcfTabix\ visibility hide\ hgIkmc IKMC Genes Mapped bed 12 International Knockout Mouse Consortium Genes Mapped to Human Genome 0 100 0 0 0 127 127 127 0 0 0 http://www.mousephenotype.org/data/genes/$$

    Description

    \

    \ This track shows genes targeted by \ International Knockout Mouse Consortium (IKMC)\ mapped to the human genome. IKMC is a \ collaboration to generate a public resource of mouse embryonic stem (ES)\ cells containing a null mutation in every gene in the mouse genome.\ Gene targets are color-coded by status:\

      \
    • Green: Reagent(s) Available
      • \
    • Yellow: In Progress
      • \
    • Blue: Not Started/On Hold
      • \
    • Black: Withdrawn/Problematic
      • \
    \

    \

    \ The KnockOut Mouse Project Data\ Coordination Center (KOMP DCC) is the central database resource\ for coordinating mouse gene targeting within IKMC and provides\ web-based query and display tools for IKMC data. In addition, the\ KOMP DCC website provides a tool for the scientific community to\ nominate genes of interest to be knocked out by the KOMP initiative.

    \ \

    \ IKMC members include\

    \ \ KOMP includes two production centers: \ CSD, a collaborative team at the Children's Hospital Oakland Research Institute\ (CHORI), the Wellcome Trust Sanger Institute and the University\ of California at Davis School of Veterinary Medicine, and \ a team at the VelociGene division of Regeneron Pharmaceuticals, Inc.\ EUCOMM includes 9 participating institutions.\ NorCOMM includes several participating institutions.\

    \ \

    Methods

    \

    \ Using complementary targeting strategies, the IKMC centers\ design and create targeting vectors, mutant ES cell lines and, to some\ extent, mutant mice, embryos or sperm. Materials are distributed to\ the research community.

    \

    \ The KOMP Repository\ archives, maintains, and distributes IKMC products. Researchers can\ order products and get product information from the\ Repository. Researchers can also express interest in products that are\ still in the pipeline. They will then receive email notification as\ soon as KOMP generated products are available for distribution.

    \

    \ The process for ordering EUCOMM materials can be found \ here.

    \

    \ The process for ordering TIGM materials can be found \ here.

    \

    \ Information on NorCOMM products and services can be found \ here.\

    \ Genes were mapped to the human genome by IKMC.\

    \ \

    Credits

    \

    \ Thanks to the International Knockout Mouse Consortium, and Carol Bult in \ particular, for providing these data.

    \ \

    References

    \

    \ Austin CP, Battey JF, Bradley A, Bucan M, Capecchi M, Collins FS, Dove WF, Duyk G, Dymecki S, Eppig\ JT et al.\ \ The knockout mouse project.\ Nat Genet. 2004 Sep;36(9):921-4.\ PMID: 15340423; PMC: PMC2716027\

    \ \

    \ Collins FS, Finnell RH, Rossant J, Wurst W.\ \ A new partner for the international knockout mouse consortium.\ Cell. 2007 Apr 20;129(2):235.\ PMID: 17448981\

    \ \

    \ International Mouse Knockout Consortium, Collins FS, Rossant J, Wurst W.\ \ A mouse for all reasons.\ Cell. 2007 Jan 12;128(1):9-13.\ PMID: 17218247\

    \ genes 1 exonNumbers off\ group genes\ itemRgb on\ longLabel International Knockout Mouse Consortium Genes Mapped to Human Genome\ mgiUrl http://www.informatics.jax.org/marker/$$\ mgiUrlLabel MGI Report:\ noScoreFilter .\ origAssembly hg19\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel IKMC Genes Mapped\ track hgIkmc\ type bed 12\ url http://www.mousephenotype.org/data/genes/$$\ urlLabel KOMP Data Coordination Center:\ visibility hide\ ileumWangCellType Ileum Cells bigBarChart Ileum cells binned by cell type from Wang et al 2020 3 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=human-intestine+ileum&gene=$$

    Description

    \

    \ This track shows data from \ Single-cell transcriptome analysis reveals differential nutrient absorption\ functions in human intestine. Droplet-based single-cell RNA sequencing\ (scRNA-seq) was used to survey gene expression profiles of the epithelium in\ the human ileum, colon, and rectum. A total of 7 cell clusters were identified:\ enterocytes (EC), goblet cells (G), paneth-like cells (PLC), enteroendocrine\ cells (EEC), progenitor cells (PRO), transient-amplifying cells (TA) and stem\ cells (SC).

    \ \

    \ This track collection contains two bar chart tracks of RNA expression in ileum\ cells where cells are grouped by cell type\ (Ileum Cells) or donor\ (Ileum Donor). The default track\ displayed is Ileum Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \
    ColorCell classification
    epithelial
    secretory
    stem cell
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. Note that the Ileum Donor track \ is colored by donor for improved clarity.

    \ \

    Method

    \

    \ Using single-cell RNA sequencing, RNA profiles of intestinal epithelial cells\ were obtained for 6,167 cells from two human ileum samples. Tissue samples\ belonged to a male donor age 60 with Neuroendocrine Carcinoma (Ileum-1) and a\ female donor age 67 with Adenocarcinoma (Ileum-2). The healthy intestinal\ mucous membranes used for each sample were cut away from the tumor border in\ surgically removed ileum tissue. Additionally, the intestinal tissues were\ washed in Hank's balanced salt solution (HBSS) to remove mucus, blood cells,\ and muscle tissue. The sample was enriched for epithelial cells through \ centrifugation before being dissociated with Tryple to obtain single-cell \ suspensions. RNA-seq libraries were prepared using 10x Genomics 3' v2 kit and \ sequenced on an Illumina Hiseq X Ten PE150.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser. The UCSC command line utility\ matrixClusterColumns, matrixToBarChart, and bedToBigBed were used to transform\ these into a bar chart format bigBed file that can be visualized. The coloring\ was done by defining colors for the broad level cell classes and then using\ another UCSC utility, hcaColorCells, to interpolate the colors across all cell\ types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credit

    \

    \ Thanks to Yalong Wang, Wanlu Song, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Luis Nassar. The\ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \ \

    \ Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG.\ \ Single-cell transcriptome analysis reveals differential nutrient absorption functions in human\ intestine.\ J Exp Med. 2020 Feb 3;217(2).\ PMID: 31753849; PMC: PMC7041720

    \ \ singleCell 1 barChartBars enteroendocrine_cell enterocyte goblet_cell paneth-like_cell progenitor_cell stem_cell transit-amplifying_cell\ barChartColors #bcd0f3 #0198c0 #568bfd #629be4 #436ca1 #9ea0a1 #919eb1\ barChartLimit 1.6\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/ileumWang/cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/ileumWang/cell_type.bb\ defaultLabelFields name\ html ileumWang\ labelFields name,name2\ longLabel Ileum cells binned by cell type from Wang et al 2020\ parent ileumWang\ shortLabel Ileum Cells\ track ileumWangCellType\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=human-intestine+ileum&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility pack\ ileumWangDonor Ileum Donor bigBarChart Ileum cells binned by organ donor from Wang et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=human-intestine+ileum&gene=$$

    Description

    \

    \ This track shows data from \ Single-cell transcriptome analysis reveals differential nutrient absorption\ functions in human intestine. Droplet-based single-cell RNA sequencing\ (scRNA-seq) was used to survey gene expression profiles of the epithelium in\ the human ileum, colon, and rectum. A total of 7 cell clusters were identified:\ enterocytes (EC), goblet cells (G), paneth-like cells (PLC), enteroendocrine\ cells (EEC), progenitor cells (PRO), transient-amplifying cells (TA) and stem\ cells (SC).

    \ \

    \ This track collection contains two bar chart tracks of RNA expression in ileum\ cells where cells are grouped by cell type\ (Ileum Cells) or donor\ (Ileum Donor). The default track\ displayed is Ileum Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \
    ColorCell classification
    epithelial
    secretory
    stem cell
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. Note that the Ileum Donor track \ is colored by donor for improved clarity.

    \ \

    Method

    \

    \ Using single-cell RNA sequencing, RNA profiles of intestinal epithelial cells\ were obtained for 6,167 cells from two human ileum samples. Tissue samples\ belonged to a male donor age 60 with Neuroendocrine Carcinoma (Ileum-1) and a\ female donor age 67 with Adenocarcinoma (Ileum-2). The healthy intestinal\ mucous membranes used for each sample were cut away from the tumor border in\ surgically removed ileum tissue. Additionally, the intestinal tissues were\ washed in Hank's balanced salt solution (HBSS) to remove mucus, blood cells,\ and muscle tissue. The sample was enriched for epithelial cells through \ centrifugation before being dissociated with Tryple to obtain single-cell \ suspensions. RNA-seq libraries were prepared using 10x Genomics 3' v2 kit and \ sequenced on an Illumina Hiseq X Ten PE150.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser. The UCSC command line utility\ matrixClusterColumns, matrixToBarChart, and bedToBigBed were used to transform\ these into a bar chart format bigBed file that can be visualized. The coloring\ was done by defining colors for the broad level cell classes and then using\ another UCSC utility, hcaColorCells, to interpolate the colors across all cell\ types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credit

    \

    \ Thanks to Yalong Wang, Wanlu Song, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Luis Nassar. The\ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \ \

    \ Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG.\ \ Single-cell transcriptome analysis reveals differential nutrient absorption functions in human\ intestine.\ J Exp Med. 2020 Feb 3;217(2).\ PMID: 31753849; PMC: PMC7041720

    \ \ singleCell 1 barChartCategoryUrl /gbdb/hg38/bbi/ileumWang/donor.colors\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/ileumWang/donor.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/ileumWang/donor.bb\ defaultLabelFields name\ html ileumWang\ labelFields name,name2\ longLabel Ileum cells binned by organ donor from Wang et al 2020\ parent ileumWang\ shortLabel Ileum Donor\ track ileumWangDonor\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=human-intestine+ileum&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ ileumWang Ileum Wang Ileum single cell sequencing from Wang et al 2020 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track shows data from \ Single-cell transcriptome analysis reveals differential nutrient absorption\ functions in human intestine. Droplet-based single-cell RNA sequencing\ (scRNA-seq) was used to survey gene expression profiles of the epithelium in\ the human ileum, colon, and rectum. A total of 7 cell clusters were identified:\ enterocytes (EC), goblet cells (G), paneth-like cells (PLC), enteroendocrine\ cells (EEC), progenitor cells (PRO), transient-amplifying cells (TA) and stem\ cells (SC).

    \ \

    \ This track collection contains two bar chart tracks of RNA expression in ileum\ cells where cells are grouped by cell type\ (Ileum Cells) or donor\ (Ileum Donor). The default track\ displayed is Ileum Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \
    ColorCell classification
    epithelial
    secretory
    stem cell
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. Note that the Ileum Donor track \ is colored by donor for improved clarity.

    \ \

    Method

    \

    \ Using single-cell RNA sequencing, RNA profiles of intestinal epithelial cells\ were obtained for 6,167 cells from two human ileum samples. Tissue samples\ belonged to a male donor age 60 with Neuroendocrine Carcinoma (Ileum-1) and a\ female donor age 67 with Adenocarcinoma (Ileum-2). The healthy intestinal\ mucous membranes used for each sample were cut away from the tumor border in\ surgically removed ileum tissue. Additionally, the intestinal tissues were\ washed in Hank's balanced salt solution (HBSS) to remove mucus, blood cells,\ and muscle tissue. The sample was enriched for epithelial cells through \ centrifugation before being dissociated with Tryple to obtain single-cell \ suspensions. RNA-seq libraries were prepared using 10x Genomics 3' v2 kit and \ sequenced on an Illumina Hiseq X Ten PE150.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser. The UCSC command line utility\ matrixClusterColumns, matrixToBarChart, and bedToBigBed were used to transform\ these into a bar chart format bigBed file that can be visualized. The coloring\ was done by defining colors for the broad level cell classes and then using\ another UCSC utility, hcaColorCells, to interpolate the colors across all cell\ types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credit

    \

    \ Thanks to Yalong Wang, Wanlu Song, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Luis Nassar. The\ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \ \

    \ Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG.\ \ Single-cell transcriptome analysis reveals differential nutrient absorption functions in human\ intestine.\ J Exp Med. 2020 Feb 3;217(2).\ PMID: 31753849; PMC: PMC7041720

    \ \ singleCell 0 group singleCell\ longLabel Ileum single cell sequencing from Wang et al 2020\ shortLabel Ileum Wang\ superTrack on\ track ileumWang\ visibility hide\ ucscToINSDC INSDC bed 4 Accession at INSDC - International Nucleotide Sequence Database Collaboration 0 100 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/nuccore/$$

    Description

    \

    \ This track associates UCSC Genome Browser chromosome names to accession\ names from the International Nucleotide Sequence Database Collaboration (INSDC).\

    \ \

    \ The data were downloaded from the NCBI assembly database.\

    \ \

    Credits

    \

    The data for this track was prepared by\ Hiram Clawson.\ \ map 1 group map\ longLabel Accession at INSDC - International Nucleotide Sequence Database Collaboration\ shortLabel INSDC\ track ucscToINSDC\ type bed 4\ url https://www.ncbi.nlm.nih.gov/nuccore/$$\ urlLabel INSDC link:\ visibility hide\ caddIns Insertions bigBed 9 + CADD 1.6 Score: Insertions - label is length of insertion 1 100 100 130 160 177 192 207 0 0 0

    Description

    \ \

    This track collection shows Combined Annotation Dependent Depletion scores.\ CADD is a tool for scoring the deleteriousness of single nucleotide variants as\ well as insertion/deletion variants in the human genome.

    \ \

    \ Some mutation annotations\ tend to exploit a single information type (e.g., phastCons or phyloP for\ conservation) and/or are restricted in scope (e.g., to missense changes). Thus,\ a broadly applicable metric that objectively weights and integrates diverse\ information is needed. Combined Annotation Dependent Depletion (CADD) is a\ framework that integrates multiple annotations into one metric by contrasting\ variants that survived natural selection with simulated mutations.\

    \ \

    \ CADD scores strongly correlate with allelic diversity, pathogenicity of both\ coding and non-coding variants, experimentally measured regulatory effects,\ and also rank causal variants within individual genome sequences with a higher\ value than non-causal variants. \ Finally, CADD scores of complex trait-associated variants from genome-wide\ association studies (GWAS) are significantly higher than matched controls and\ correlate with study sample size, likely reflecting the increased accuracy of\ larger GWAS.\

    \ \

    \ A CADD score represents a ranking not a prediction, and no threshold is defined\ for a specific purpose. Higher scores are more likely to be deleterious: \ Scores are \ \ 

      10 * -log of the rank
    \ \ so that variants with scores above 20 are \ predicted to be among the 1.0% most deleterious possible substitutions in \ the human genome. We recommend thinking carefully about what threshold is \ appropriate for your application.\

    \ \

    Display Conventions and Configuration

    \

    \ There are six subtracks of this track: four for single-nucleotide mutations,\ one for each base, showing all possible substitutions, \ one for insertions and one for deletions. All subtracks show the CADD Phred\ score on mouseover. Zooming in shows the exact score on mouseover, same\ basepair = score 0.0.

    \

    \ PHRED-scaled scores are normalized to all potential ~9 billion SNVs, and\ thereby provide an externally comparable unit for analysis. For example, a\ scaled score of 10 or greater indicates a raw score in the top 10% of all\ possible reference genome SNVs, and a score of 20 or greater indicates a raw\ score in the top 1%, regardless of the details of the annotation set, model\ parameters, etc.\

    \

    \ The four single-nucleotide mutation tracks have a default viewing range of\ score 10 to 50. As explained in the paragraph above, that results in\ slightly less than 10% of the data displayed. The \ deletion and insertion tracks have a default filter of 10-100, because they\ display discrete items and not graphical data.\

    \ \

    \ Single nucleotide variants (SNV): For SNVs, at every\ genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing \ the reference allele, e.g., A to A, is always set to zero.\

    \

    \ When using this track, zoom in until you can see every basepair at the\ top of the display. Otherwise, there are several nucleotides per pixel under \ your mouse cursor and instead of an actual score, the tooltip text will show\ the average score of all nucleotides under the cursor. This is indicated by\ the prefix "~" in the mouseover. Averages of scores are not useful for any\ application of CADD.\

    \ \

    Insertions and deletions: Scores are also shown on mouseover for a\ set of insertions and deletions. On hg38, the set has been obtained from\ gnomAD3. On hg19, the set of indels has been obtained from various sources\ (gnomAD2, ExAC, 1000 Genomes, ESP). If your insertion or deleletion of interest\ is not in the track, you will need to use CADD's\ online scoring tool\ to obtain them.

    \ \

    Data access

    \

    \ CADD scores are freely available for all non-commercial applications from\ the CADD website.\ For commercial applications, see\ the license instructions there.\

    \ \

    \ The CADD data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ The files for this track are called a.bw, c.bw, g.bw, t.bw, ins.bb and del.bb. Individual\ regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\
    \ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd/a.bw stdout\
    \ or\
    \ bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd/ins.bb stdout

    \ \

    Methods

    \ \

    \ Data were converted from the files provided on\ the CADD Downloads website,\ provided by the Kircher lab, using\ \ custom Python scripts, \ documented in our \ makeDoc files.\

    \ \

    Credits

    \

    \ Thanks to the CADD development team for providing precomputed data as simple tab-separated files.\

    \ \

    References

    \

    \ Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J.\ \ A general framework for estimating the relative pathogenicity of human genetic variants.\ Nat Genet. 2014 Mar;46(3):310-5.\ PMID: 24487276;\ PMC: PMC3992975\

    \ \

    \ Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M.\ \ CADD: predicting the deleteriousness of variants throughout the human genome.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D886-D894.\ PMID: 30371827;\ PMC: PMC6323892\

    \ phenDis 1 bigDataUrl /gbdb/hg38/cadd/ins.bb\ filter.score 10:100\ filterByRange.score on\ filterLabel.score Show only items with PHRED scale score of\ filterLimits.score 0:100\ html caddSuper\ longLabel CADD 1.6 Score: Insertions - label is length of insertion\ mouseOver Mutation: $change CADD Phred score: $phred\ parent caddSuper\ shortLabel Insertions\ track caddIns\ type bigBed 9 +\ visibility dense\ ghInteraction Interactions bigInteract GeneHancer Regulatory Elements and Gene Interactions 2 100 0 0 0 127 127 127 0 0 0 https://www.genecards.org/cgi-bin/carddisp.pl?gene=$&keywords=$&prefilter=enhancers#enhancers regulation 1 interactDirectional offsetTarget\ interactMultiRegion on\ longLabel GeneHancer Regulatory Elements and Gene Interactions\ maxHeightPixels 50:100:200\ parent geneHancer\ shortLabel Interactions\ track ghInteraction\ type bigInteract\ url https://www.genecards.org/cgi-bin/carddisp.pl?gene=$&keywords=$&prefilter=enhancers#enhancers\ urlLabel Interaction in GeneCards\ view c_I\ viewUi on\ visibility full\ jaspar JASPAR Transcription Factors bigBed 6 . JASPAR Transcription Factor Binding Site Database 0 100 0 0 0 127 127 127 1 0 0 http://jaspar.genereg.net/search?q=$$&collection=all&tax_group=all&tax_id=all&type=all&class=all&family=all&version=all

    Description

    \

    \ This track represents genome-wide predicted binding sites for TF \ (transcription factor) binding profiles in the \ JASPAR \ CORE collection. This open-source database contains a curated, non-redundant \ set of binding profiles derived from published collections of experimentally \ defined transcription factor binding sites for eukaryotes.

    \ \

    Display Conventions and Configuration

    \

    \ Shaded boxes represent predicted binding sites for each of the TF profiles\ in the JASPAR CORE collection. The shading of the boxes indicates \ the p-value of the profile's match to that position (scaled between \ 0-1000 scores, where 0 corresponds to a p-value of 1 and 1000 to a \ p-value ≤ 10-10). Thus, the darker the shade, the \ lower (better) the p-value.

    \ \

    \ The default view shows only predicted binding sites with scores of 400 or greater but\ can be adjusted in the track settings. Multi-select filters allow viewing of\ particular transcription factors. At window sizes of greater than\ 10,000 base pairs, this track turns to density graph mode. \ Zoom to a smaller region and click into an item to see more detail.

    \ \

    \ From BED format documentation:\ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    shade         
    score in range≤ 166167-277278-388389-499500-611612-722723-833834-944≥ 945
    \ \

    Conversion table:

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    Item score01001312003004005006007008009001000
    p-value10.10.04910-210-310-410-510-610-710-810-9≤ 10-10
    \ \

    Methods

    \

    \ The JASPAR 2024 update expanded the JASPAR CORE collection by 20% (329 added and 72 upgraded\ profiles). The new profiles were introduced after manual curation, in which 26 629 TF binding\ motifs were curated and obtained as PFMs or discovered from ChIP-seq/-exo or DAP-seq data. 2500\ profiles from JASPAR 2022 were revised to either promote them to the CORE collection, update the\ associated metadata, or remove them because of validation inconsistencies or poor quality. The\ JASPAR database stores and focuses mostly on PFMs as the model of choice for TF-DNA interactions.\ More information on the methods can be found in the\ \ JASPAR 2024 publication or on the\ JASPAR website.

    \ \

    \ JASPAR 2022 contains updated transcription factor binding sites\ with additional transcription factor profiles. More information on the methods can be found in the\ \ JASPAR 2022 publication\ JASPAR 2022 publication or on the\ JASPAR website.

    \ \

    \ JASPAR 2020 scanned DNA sequences with JASPAR CORE TF-binding profiles \ for each taxa independently using PWMScan. TFBS predictions were selected with \ a PWM relative score ≥ 0.8 and a p-value < 0.05. P-values were scaled \ between 0 (corresponding to a p-value of 1) and 1000 (p-value ≤ 10-10) for \ coloring of the genome tracks and to allow for comparison of prediction \ confidence between different profiles.

    \ \

    \ JASPAR 2018 used the TFBS Perl module (Lenhard and Wasserman 2002) \ and FIMO (Grant, Bailey, and Noble 2011), as distributed within the MEME suite \ (version 4.11.2) (Bailey et al. 2009). For scanning genomes with the \ BioPerl TFBS module, profiles were converted to PWMs and matches were kept with a \ relative score ≥ 0.8. For the FIMO scan, profiles were reformatted to MEME motifs \ and matches with a p-value < 0.05 were kept. TFBS predictions that were not \ consistent between the two methods (TFBS Perl module and FIMO) were removed. The \ remaining TFBS predictions were colored according \ to their FIMO p-value to allow for comparison of prediction confidence between \ different profiles.

    \ \

    \ Please refer to the JASPAR 2024, 2022, 2020, and 2018 publications for more \ details (citation below).

    \ \

    Data Access

    \

    \ JASPAR Transcription Factor Binding data includes billions of items. Limited regions can \ be explored interactively with the \ Table Browser and cross-referenced with \ Data Integrator, although positional\ queries that are too big can lead to timing out. This results in a black page\ or truncated output. In this case, you may try reducing the chromosomal query to\ a smaller window.

    \

    \ For programmatic access, \ the track can be accessed using the Genome Browser's \ REST API. \ JASPAR annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

    \

    \ The utilities for working with bigBed-formatted binary files can be downloaded\ here.\ Run a utility with no arguments to see a brief description of the utility and its options.\

      \
    • bigBedInfo provides summary statistics about a bigBed file including the number of\ items in the file. With the -as option, the output includes an\ autoSql\ definition of data columns, useful for interpreting the column values.
      • \
    • bigBedToBed converts the binary bigBed data to tab-separated text.\ Output can be restricted to a particular region by using the -chrom, -start\ and -end options.
      • \
    \

    \ \

    Example: retrieve all JASPAR items in chr1:200001-200400

    \ \ 
    bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/jaspar/JASPAR2024.bb -chrom=chr1 -start=200000 -end=200400 stdout
    \ \

    \ All data are freely available.\ Additional resources are available directly from the JASPAR group:

    \ \ \

    Other Genomes

    \

    The JASPAR group provides TFBS predictions for many additional species and \ genomes, accessible by connection to their \ \ Public Hub or by clicking the assembly links below:

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    SpeciesGenome assembly versions
    Human - Homo sapienshg19, \ hg38
    Mouse - Mus musculusmm10, \ mm39
    Zebrafish - Danio reriodanRer11
    Fruitfly - Drosophila melanogasterdm6
    Nematode - Caenorhabditis elegansce10,\ ce11
    Vase tunicate - Ciona intestinalisci3
    Thale cress - Arabidopsis thalianaaraTha1
    Yeast - Saccharomyces cerevisiaesacCer3
    \ \

    Credits

    \

    \ The JASPAR database is a joint effort between several labs \ (please see the latest JASPAR paper, below). \ Binding site predictions and UCSC tracks were computed by the Wasserman Lab. For \ enquiries about the data please contact Oriol Fornes \ (\ oriol@cmmt.\ ubc.ca\ ).

    \ \
    \

    Wasserman Lab
    \ Centre for Molecular Medicine and Therapeutics
    \ BC Children's Hospital Research Institute
    \ Department of Medical Genetics
    \ University of British Columbia
    \ Vancouver, Canada\

    \
    \ \

    References

    \

    \ Castro-Mondragon JA, Riudavets-Puig R, Rauluseviciute I, Berhanu Lemma R, Turchi L, Blanc-Mathieu R,\ Lucas J, Boddie P, Khan A, Manosalva Pérez N et al.\ \ JASPAR 2022: the 9th release of the open-access database of transcription factor binding\ profiles.\ Nucleic Acids Res. 2021 Nov 30;.\ PMID: 34850907\

    \ \

    \ Fornes O, Castro-Mondragon JA, Khan A, van der Lee R, Zhang X, Richmond PA, \ Modi BP, Correard S, Gheorghe M, Baranašić D et al.\ \ JASPAR 2020: update of the open-access database of transcription factor \ binding profiles.\ Nucleic Acids Res. 2020 Jan 8;48(D1):D87-D92.\ PMID: 31701148; PMC: PMC7145627\

    \ \

    \ Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, \ Bessy A, Chèneby J, Kulkarni SR, Tan G et al.\ \ JASPAR 2018: update of the open-access database of transcription factor \ binding profiles and its web framework.\ Nucleic Acids Res. 2018 Jan 4;46(D1):D260-D266.\ PMID: 29140473; PMC: PMC5753243\

    \ \

    \ Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma\ RB, Lucas J, Chèneby J, Baranasic D et al.\ \ JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding\ profiles.\ Nucleic Acids Res. 2023 Nov 14;.\ PMID: 37962376\

    \ regulation 1 compositeTrack on\ exonArrows on\ filter.score 400\ filterByRange.score 0:1000\ group regulation\ longLabel JASPAR Transcription Factor Binding Site Database\ maxWindowCoverage 15000\ noGenomeReason JASPAR files contain billions of items. The Table Browser allows regional queries for this track, but those may timeout if the regions are too big. See the Data Access section in the track description page for other ways to query this data, such as command-line tools and our API.\ noParentConfig on\ pennantIcon Updated red ../goldenPath/newsarch.html#030524 "Updated Mar. 5, 2024"\ shortLabel JASPAR Transcription Factors\ showCfg on\ spectrum on\ tableBrowser tbNoGenome\ track jaspar\ type bigBed 6 .\ url http://jaspar.genereg.net/search?q=$$&collection=all&tax_group=all&tax_id=all&type=all&class=all&family=all&version=all\ urlLabel View on JASPAR:\ visibility hide\ KICH KICH bigLolly 12 + Kidney Chromophobe 0 100 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/KICH.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Kidney Chromophobe\ parent gdcCancer off\ priority \ shortLabel KICH\ track KICH\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ kidneyStewartBroadCellType Kidney Broad CT bigBarChart Kidney RNA binned by broad cell type from Stewart et al 2019 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=kidney-atlas+mature-full&gene=$$

    Description

    \

    \ This track displays data from Spatiotemporal immune zonation of the human kidney. \ Droplet-based single-cell RNA sequencing (scRNA-seq) was used to profile 40,268 \ mature human kidney cells. After principal component analysis, identified clusters \ were manually curated into four major cellular compartments using canonical markers \ as found in Stewart et al., 2019: endothelial, immune, fibroblast, and epithelium.\ \

    \ This track collection contains six bar chart tracks of RNA expression in the\ human kidney where cells are grouped by merged cell type \ (Kidney Cells), broad cell type \ (Kidney Broad CT), detailed cell type \ (Kidney Details), compartment\ (Kidney Compartment), experiment \ (Kidney Experiment), and project \ (Kidney Project).\ The default track displayed is \ Kidney Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    kidney specific
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ 14 mature healthy human kidney samples were obtained from individuals (ages\ 1-72) that either underwent tumor nephrectomy (n=10) or from kidneys donated\ for transplantation (n=4) but were unsuitable for use. Kidney tissues from\ tumor nephrectomies were collected from unaffected areas estimated to be\ corticomedullary. Samples were enzymatically dissociated and enriched for live\ cells (experiment set 1) or enriched for leukocytes with a density gradient and\ then for live cells (experiment set 2). Single cell libraries were prepared\ using 10x Genomics 3' v2 kit and sequenced on an Illumina HiSeq4000.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser. \ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Benjamin J Stewart, John R Ferdinand, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Stewart BJ, Ferdinand JR, Young MD, Mitchell TJ, Loudon KW, Riding AM, Richoz N, Frazer GL,\ Staniforth JUL, Vieira Braga FA et al.\ \ Spatiotemporal immune zonation of the human kidney.\ Science. 2019 Sep 27;365(6460):1461-1466.\ PMID: 31604275; PMC: PMC7343525\

    \ \ singleCell 1 barChartBars Ascending_vasa_recta_endothelium B_cell CD4_T_cell CD8_T_cell Connecting_tubule Descending_vasa_recta_endothelium Epithelial_progenitor_cell Fibroblast Glomerular_endothelium Intercalated_cell MNP-a/classical_monocyte_derived MNP-b/non-classical_monocyte_derived MNP-c/dendritic_cell MNP-d/Tissue_macrophage Mast_cell Myofibroblast NK_cell NKT_cell Neutrophil Pelvic_epithelium Peritubular_capillary_endothelium Plasmacytoid_dendritic_cell Podocyte Principal_cell Proximal_tubule Thick_ascending_limb_of_Loop_of_Henle Transitional_urothelium\ barChartColors #5bd05a #ec374a #f7354b #f7354b #5f66ed #5fcd5b #60afce #e0cdc4 #0ab707 #181dda #e77258 #e67259 #e2745e #e8a497 #eec7c9 #c88b6c #eb384a #f4364b #e5c8c1 #5cb6cf #05bb04 #edc6c6 #9f968b #6496d4 #0e0ceb #181cd9 #bfd7e4\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/kidneyStewart/broad_celltype.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/kidneyStewart/broad_celltype.bb\ defaultLabelFields name\ html kidneyStewart\ labelFields name,name2\ longLabel Kidney RNA binned by broad cell type from Stewart et al 2019\ parent kidneyStewart\ shortLabel Kidney Broad CT\ track kidneyStewartBroadCellType\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=kidney-atlas+mature-full&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ kidneyStewartCellType Kidney Cells bigBarChart Kidney RNA binned by merged cell type from Stewart et al 2019 3 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=kidney-atlas+mature-full&gene=$$

    Description

    \

    \ This track displays data from Spatiotemporal immune zonation of the human kidney. \ Droplet-based single-cell RNA sequencing (scRNA-seq) was used to profile 40,268 \ mature human kidney cells. After principal component analysis, identified clusters \ were manually curated into four major cellular compartments using canonical markers \ as found in Stewart et al., 2019: endothelial, immune, fibroblast, and epithelium.\ \

    \ This track collection contains six bar chart tracks of RNA expression in the\ human kidney where cells are grouped by merged cell type \ (Kidney Cells), broad cell type \ (Kidney Broad CT), detailed cell type \ (Kidney Details), compartment\ (Kidney Compartment), experiment \ (Kidney Experiment), and project \ (Kidney Project).\ The default track displayed is \ Kidney Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    kidney specific
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ 14 mature healthy human kidney samples were obtained from individuals (ages\ 1-72) that either underwent tumor nephrectomy (n=10) or from kidneys donated\ for transplantation (n=4) but were unsuitable for use. Kidney tissues from\ tumor nephrectomies were collected from unaffected areas estimated to be\ corticomedullary. Samples were enzymatically dissociated and enriched for live\ cells (experiment set 1) or enriched for leukocytes with a density gradient and\ then for live cells (experiment set 2). Single cell libraries were prepared\ using 10x Genomics 3' v2 kit and sequenced on an Illumina HiSeq4000.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser. \ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Benjamin J Stewart, John R Ferdinand, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Stewart BJ, Ferdinand JR, Young MD, Mitchell TJ, Loudon KW, Riding AM, Richoz N, Frazer GL,\ Staniforth JUL, Vieira Braga FA et al.\ \ Spatiotemporal immune zonation of the human kidney.\ Science. 2019 Sep 27;365(6460):1461-1466.\ PMID: 31604275; PMC: PMC7343525\

    \ \ singleCell 1 barChartBars ascending_vasa_recta_endothelial_cell B_cell T_cell_CD4+ T_cell_CD8+ connecting_tubule_cell descending_vasa_recta_endothelial_cell epithelial_progenitor_cell fibroblast glomerular_endothelial_cell intercalated_cell mononuclear_phagocyte natural_killer_cell other_immune_cell pelvic_epithelial_cell peritubular_capillary_endothelial_cell podocyte principal_cell proximal_tubule_cell thick_ascending_loop_of_Henle transitional_urothelium_cell\ barChartColors #5bd05a #ec374a #f7354b #f7354b #5f66ed #5fcd5b #60afce #c98b6b #0ab707 #181dda #de2a02 #f1374b #e7a69c #5cb6cf #05bb04 #9f968b #6496d4 #0e0ceb #181cd9 #bfd7e4\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/kidneyStewart/cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/kidneyStewart/cell_type.bb\ defaultLabelFields name\ html kidneyStewart\ labelFields name,name2\ longLabel Kidney RNA binned by merged cell type from Stewart et al 2019\ parent kidneyStewart\ shortLabel Kidney Cells\ track kidneyStewartCellType\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=kidney-atlas+mature-full&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility pack\ kidneyStewartCompartment Kidney Compartment bigBarChart Kidney RNA binned by compartment from Stewart et al 2019 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=kidney-atlas+mature-full&gene=$$

    Description

    \

    \ This track displays data from Spatiotemporal immune zonation of the human kidney. \ Droplet-based single-cell RNA sequencing (scRNA-seq) was used to profile 40,268 \ mature human kidney cells. After principal component analysis, identified clusters \ were manually curated into four major cellular compartments using canonical markers \ as found in Stewart et al., 2019: endothelial, immune, fibroblast, and epithelium.\ \

    \ This track collection contains six bar chart tracks of RNA expression in the\ human kidney where cells are grouped by merged cell type \ (Kidney Cells), broad cell type \ (Kidney Broad CT), detailed cell type \ (Kidney Details), compartment\ (Kidney Compartment), experiment \ (Kidney Experiment), and project \ (Kidney Project).\ The default track displayed is \ Kidney Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    kidney specific
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ 14 mature healthy human kidney samples were obtained from individuals (ages\ 1-72) that either underwent tumor nephrectomy (n=10) or from kidneys donated\ for transplantation (n=4) but were unsuitable for use. Kidney tissues from\ tumor nephrectomies were collected from unaffected areas estimated to be\ corticomedullary. Samples were enzymatically dissociated and enriched for live\ cells (experiment set 1) or enriched for leukocytes with a density gradient and\ then for live cells (experiment set 2). Single cell libraries were prepared\ using 10x Genomics 3' v2 kit and sequenced on an Illumina HiSeq4000.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser. \ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Benjamin J Stewart, John R Ferdinand, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Stewart BJ, Ferdinand JR, Young MD, Mitchell TJ, Loudon KW, Riding AM, Richoz N, Frazer GL,\ Staniforth JUL, Vieira Braga FA et al.\ \ Spatiotemporal immune zonation of the human kidney.\ Science. 2019 Sep 27;365(6460):1461-1466.\ PMID: 31604275; PMC: PMC7343525\

    \ \ singleCell 1 barChartBars PT lymphoid myeloid non_PT\ barChartColors #0e0dea #fb344a #dd2a02 #257684\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/kidneyStewart/compartment.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/kidneyStewart/compartment.bb\ defaultLabelFields name\ html kidneyStewart\ labelFields name,name2\ longLabel Kidney RNA binned by compartment from Stewart et al 2019\ parent kidneyStewart\ shortLabel Kidney Compartment\ track kidneyStewartCompartment\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=kidney-atlas+mature-full&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ kidneyStewartDetailedCellType Kidney Details bigBarChart Kidney RNA binned by detailed cell type from Stewart et al 2019 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=kidney-atlas+mature-full&gene=$$

    Description

    \

    \ This track displays data from Spatiotemporal immune zonation of the human kidney. \ Droplet-based single-cell RNA sequencing (scRNA-seq) was used to profile 40,268 \ mature human kidney cells. After principal component analysis, identified clusters \ were manually curated into four major cellular compartments using canonical markers \ as found in Stewart et al., 2019: endothelial, immune, fibroblast, and epithelium.\ \

    \ This track collection contains six bar chart tracks of RNA expression in the\ human kidney where cells are grouped by merged cell type \ (Kidney Cells), broad cell type \ (Kidney Broad CT), detailed cell type \ (Kidney Details), compartment\ (Kidney Compartment), experiment \ (Kidney Experiment), and project \ (Kidney Project).\ The default track displayed is \ Kidney Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    kidney specific
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ 14 mature healthy human kidney samples were obtained from individuals (ages\ 1-72) that either underwent tumor nephrectomy (n=10) or from kidneys donated\ for transplantation (n=4) but were unsuitable for use. Kidney tissues from\ tumor nephrectomies were collected from unaffected areas estimated to be\ corticomedullary. Samples were enzymatically dissociated and enriched for live\ cells (experiment set 1) or enriched for leukocytes with a density gradient and\ then for live cells (experiment set 2). Single cell libraries were prepared\ using 10x Genomics 3' v2 kit and sequenced on an Illumina HiSeq4000.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser. \ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Benjamin J Stewart, John R Ferdinand, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Stewart BJ, Ferdinand JR, Young MD, Mitchell TJ, Loudon KW, Riding AM, Richoz N, Frazer GL,\ Staniforth JUL, Vieira Braga FA et al.\ \ Spatiotemporal immune zonation of the human kidney.\ Science. 2019 Sep 27;365(6460):1461-1466.\ PMID: 31604275; PMC: PMC7343525\

    \ \ singleCell 1 barChartBars Ascending_vasa_recta_endothelium B_cell CD4_T_cell CD8_T_cell Connecting_tubule Descending_vasa_recta_endothelium Distinct_proximal_tubule_1 Distinct_proximal_tubule_2 Epithelial_progenitor_cell Fibroblast Glomerular_endothelium Indistinct_intercalated_cell MNP-a/classical_monocyte_derived MNP-b/non-classical_monocyte_derived MNP-c/dendritic_cell MNP-d/Tissue_macrophage Mast_cell Myofibroblast NK_cell NKT_cell Neutrophil Pelvic_epithelium Peritubular_capillary_endothelium_1 Peritubular_capillary_endothelium_2 Plasmacytoid_dendritic_cell Podocyte Principal_cell Proliferating_Proximal_Tubule Proximal_tubule Thick_ascending_limb_of_Loop_of_Henle Transitional_urothelium Type_A_intercalated_cell Type_B_intercalated_cell\ barChartColors #5bd05a #ec374a #f7354b #f7354b #5f66ed #5fcd5b #bfd5e4 #5d5df3 #60afce #e0cdc4 #0ab707 #6b6cdf #e77258 #e67259 #e2745e #e8a497 #eec7c9 #c88b6c #eb384a #f4364b #e5c8c1 #5cb6cf #07ba05 #65c860 #edc6c6 #9f968b #6496d4 #615fef #0e0dea #181cd9 #bfd7e4 #656be5 #6873df\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/kidneyStewart/detailed_cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/kidneyStewart/detailed_cell_type.bb\ defaultLabelFields name\ html kidneyStewart\ labelFields name,name2\ longLabel Kidney RNA binned by detailed cell type from Stewart et al 2019\ parent kidneyStewart\ shortLabel Kidney Details\ track kidneyStewartDetailedCellType\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=kidney-atlas+mature-full&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ kidneyStewartExperiment Kidney Experiment bigBarChart Kidney RNA binned by Experiment from Stewart et al 2019 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=kidney-atlas+mature-full&gene=$$

    Description

    \

    \ This track displays data from Spatiotemporal immune zonation of the human kidney. \ Droplet-based single-cell RNA sequencing (scRNA-seq) was used to profile 40,268 \ mature human kidney cells. After principal component analysis, identified clusters \ were manually curated into four major cellular compartments using canonical markers \ as found in Stewart et al., 2019: endothelial, immune, fibroblast, and epithelium.\ \

    \ This track collection contains six bar chart tracks of RNA expression in the\ human kidney where cells are grouped by merged cell type \ (Kidney Cells), broad cell type \ (Kidney Broad CT), detailed cell type \ (Kidney Details), compartment\ (Kidney Compartment), experiment \ (Kidney Experiment), and project \ (Kidney Project).\ The default track displayed is \ Kidney Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    kidney specific
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ 14 mature healthy human kidney samples were obtained from individuals (ages\ 1-72) that either underwent tumor nephrectomy (n=10) or from kidneys donated\ for transplantation (n=4) but were unsuitable for use. Kidney tissues from\ tumor nephrectomies were collected from unaffected areas estimated to be\ corticomedullary. Samples were enzymatically dissociated and enriched for live\ cells (experiment set 1) or enriched for leukocytes with a density gradient and\ then for live cells (experiment set 2). Single cell libraries were prepared\ using 10x Genomics 3' v2 kit and sequenced on an Illumina HiSeq4000.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser. \ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Benjamin J Stewart, John R Ferdinand, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Stewart BJ, Ferdinand JR, Young MD, Mitchell TJ, Loudon KW, Riding AM, Richoz N, Frazer GL,\ Staniforth JUL, Vieira Braga FA et al.\ \ Spatiotemporal immune zonation of the human kidney.\ Science. 2019 Sep 27;365(6460):1461-1466.\ PMID: 31604275; PMC: PMC7343525\

    \ \ singleCell 1 barChartBars PapRCC RCC1 RCC2 RCC3 Teen_Tx TxK1 TxK2 TxK3 TxK4 VHL_RCC Wilms1 Wilms2 Wilms3\ barChartColors #cec2e1 #415c71 #1712e1 #2b1fc6 #0d0cec #1d16db #6f6ddd #928faf #e03752 #100ee8 #2118d4 #7581cf #251cce\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/kidneyStewart/Experiment.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/kidneyStewart/Experiment.bb\ defaultLabelFields name\ html kidneyStewart\ labelFields name,name2\ longLabel Kidney RNA binned by Experiment from Stewart et al 2019\ parent kidneyStewart\ shortLabel Kidney Experiment\ track kidneyStewartExperiment\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=kidney-atlas+mature-full&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ kidneyStewartProject Kidney Project bigBarChart Kidney RNA binned by project from Stewart et al 2019 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=kidney-atlas+mature-full&gene=$$

    Description

    \

    \ This track displays data from Spatiotemporal immune zonation of the human kidney. \ Droplet-based single-cell RNA sequencing (scRNA-seq) was used to profile 40,268 \ mature human kidney cells. After principal component analysis, identified clusters \ were manually curated into four major cellular compartments using canonical markers \ as found in Stewart et al., 2019: endothelial, immune, fibroblast, and epithelium.\ \

    \ This track collection contains six bar chart tracks of RNA expression in the\ human kidney where cells are grouped by merged cell type \ (Kidney Cells), broad cell type \ (Kidney Broad CT), detailed cell type \ (Kidney Details), compartment\ (Kidney Compartment), experiment \ (Kidney Experiment), and project \ (Kidney Project).\ The default track displayed is \ Kidney Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    kidney specific
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ 14 mature healthy human kidney samples were obtained from individuals (ages\ 1-72) that either underwent tumor nephrectomy (n=10) or from kidneys donated\ for transplantation (n=4) but were unsuitable for use. Kidney tissues from\ tumor nephrectomies were collected from unaffected areas estimated to be\ corticomedullary. Samples were enzymatically dissociated and enriched for live\ cells (experiment set 1) or enriched for leukocytes with a density gradient and\ then for live cells (experiment set 2). Single cell libraries were prepared\ using 10x Genomics 3' v2 kit and sequenced on an Illumina HiSeq4000.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser. \ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Benjamin J Stewart, John R Ferdinand, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Stewart BJ, Ferdinand JR, Young MD, Mitchell TJ, Loudon KW, Riding AM, Richoz N, Frazer GL,\ Staniforth JUL, Vieira Braga FA et al.\ \ Spatiotemporal immune zonation of the human kidney.\ Science. 2019 Sep 27;365(6460):1461-1466.\ PMID: 31604275; PMC: PMC7343525\

    \ \ singleCell 1 barChartBars Experiment_set_1 Experiment_set_2\ barChartColors #0d0bed #c8385f\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/kidneyStewart/Project.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/kidneyStewart/Project.bb\ defaultLabelFields name\ html kidneyStewart\ labelFields name,name2\ longLabel Kidney RNA binned by project from Stewart et al 2019\ parent kidneyStewart\ shortLabel Kidney Project\ track kidneyStewartProject\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=kidney-atlas+mature-full&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ kidneyStewart Kidney Stewart Kidney single cell data from Stewart et al 2019 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track displays data from Spatiotemporal immune zonation of the human kidney. \ Droplet-based single-cell RNA sequencing (scRNA-seq) was used to profile 40,268 \ mature human kidney cells. After principal component analysis, identified clusters \ were manually curated into four major cellular compartments using canonical markers \ as found in Stewart et al., 2019: endothelial, immune, fibroblast, and epithelium.\ \

    \ This track collection contains six bar chart tracks of RNA expression in the\ human kidney where cells are grouped by merged cell type \ (Kidney Cells), broad cell type \ (Kidney Broad CT), detailed cell type \ (Kidney Details), compartment\ (Kidney Compartment), experiment \ (Kidney Experiment), and project \ (Kidney Project).\ The default track displayed is \ Kidney Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    kidney specific
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ 14 mature healthy human kidney samples were obtained from individuals (ages\ 1-72) that either underwent tumor nephrectomy (n=10) or from kidneys donated\ for transplantation (n=4) but were unsuitable for use. Kidney tissues from\ tumor nephrectomies were collected from unaffected areas estimated to be\ corticomedullary. Samples were enzymatically dissociated and enriched for live\ cells (experiment set 1) or enriched for leukocytes with a density gradient and\ then for live cells (experiment set 2). Single cell libraries were prepared\ using 10x Genomics 3' v2 kit and sequenced on an Illumina HiSeq4000.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the UCSC Cell Browser. \ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed\ were used to transform these into a bar chart format bigBed file that can be\ visualized. The coloring was done by defining colors for the broad level cell\ classes and then using another UCSC utility, hcaColorCells, to interpolate the\ colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Benjamin J Stewart, John R Ferdinand, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Stewart BJ, Ferdinand JR, Young MD, Mitchell TJ, Loudon KW, Riding AM, Richoz N, Frazer GL,\ Staniforth JUL, Vieira Braga FA et al.\ \ Spatiotemporal immune zonation of the human kidney.\ Science. 2019 Sep 27;365(6460):1461-1466.\ PMID: 31604275; PMC: PMC7343525\

    \ \ singleCell 0 group singleCell\ longLabel Kidney single cell data from Stewart et al 2019\ shortLabel Kidney Stewart\ superTrack on\ track kidneyStewart\ visibility hide\ liftHg19 LiftOver & ReMap chain UCSC LiftOver and NCBI ReMap: Genome alignments to convert annotations to hg19 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ This track shows alignments from the hg38 to the hg19 genome assembly, used by the UCSC\ liftOver tool and \ NCBI's ReMap\ service, respectively.\ \

    Display Conventions and Configuration

    \ \

    The track has three subtracks, one for UCSC and two for NCBI alignments.

    \

    \ The alignments are shown as "chains" of alignable regions. The display is similar to\ the other chain tracks, see our \ \ chain display documentation for more information.\

    \ \ \

    Data access

    \

    \ UCSC liftOver chain files for hg19 to hg38 can be obtained from a dedicated directory on our\ \ Download server. The NCBI chain file can be obtained from the\ \ MySQL tables directory on our download server, the filename is 'chainHg19ReMap.txt.gz'.\

    \ \

    \ Both tables can also be explored interactively with the\ Table Browser or the\ Data Integrator.\

    \ \

    Methods

    \ ReMap 2.2 alignments were downloaded from the \ \ NCBI FTP site and converted with the UCSC kent command line tools. The UCSC tool chainSwap was\ used to swap target and query genome to show the mappings on the hg38 genome. Like all data\ processing for the genome browser, the procedure is documented in our\ \ hg19 makeDoc file.\ \

    Credits

    \

    \ Thanks to NCBI for making the ReMap data available and to Angie Hinrichs for the file conversion.\

    \ map 1 compositeTrack on\ group map\ longLabel UCSC LiftOver and NCBI ReMap: Genome alignments to convert annotations to hg19\ shortLabel LiftOver & ReMap\ track liftHg19\ type chain\ visibility hide\ lincRNAsTranscripts lincRNA TUCP genePred lincRNA and TUCP transcripts 3 100 100 50 0 175 150 128 0 0 0

    Description

    \ \

    This track displays the Human Body Map lincRNAs (large intergenic non\ coding RNAs) and TUCPs (transcripts of uncertain coding potential), as well as their\ expression levels across 22 human tissues and cell lines. The Human Body Map catalog was generated\ by integrating previously existing annotation sources with transcripts that were de-novo assembled\ from RNA-Seq data. These transcripts were collected from ~4 billion RNA-Seq reads across 24 tissues \ and cell types.

    \ \

    Expression abundance was estimated by Cufflinks (Trapnell et al., 2010) based on RNA-Seq. \ Expression abundances were estimated on the gene locus level, rather than for each transcript \ separately and are given as raw FPKM. The prefixes tcons_ and tcons_l2_ are used to describe \ lincRNAs and TUCP transcripts, respectively. Specific details about the catalog generation and data \ sets used for this study can be found in Cabili et al (2011). Extended \ characterization of each transcript in the human body map catalog can be found at the Human lincRNA\ Catalog website.

    \ \

    Expression abundance scores range from 0 to 1000, and are displayed from light blue to dark blue\ respectively:

    \ \ \

    01000

    \ \

    Credits

    \ \

    The body map RNA-Seq data was kindly provided by the Gene Expression\ Applications research group at Illumina.

    \ \

    References

    \ \

    \ Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL.\ \ Integrative annotation of human large intergenic noncoding RNAs reveals global properties and\ specific subclasses.\ Genes Dev. 2011 Sep 15;25(18):1915-27.\ PMID: 21890647; PMC: PMC3185964\

    \ \

    \ Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter\ L.\ \ Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform\ switching during cell differentiation.\ Nat Biotechnol. 2010 May;28(5):511-5.\ PMID: 20436464; PMC: PMC3146043\

    \ genes 1 altColor 175,150,128\ color 100,50,0\ html lincRNAs\ longLabel lincRNA and TUCP transcripts\ noInherit on\ origAssembly hg19\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel lincRNA TUCP\ superTrack nonCodingRNAs pack\ track lincRNAsTranscripts\ type genePred\ liverMacParlandBroadCellType Liver Broad bigBarChart Liver cells binned by broad cell type from MacParland et al 2018 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=human-liver&gene=$$

    Description

    \

    \ This track shows data from \ Single cell RNA sequencing of human liver reveals distinct intrahepatic\ macrophage populations. Liver tissue was analyzed using droplet-based \ single-cell RNA-sequencing (scRNA-seq) and subsequent clustering distinguished 20\ hepatic cell populations based on their identified marker genes found in\ MacParland et al., 2018.

    \ \

    \ There are three bar chart tracks in this track collection with liver cells\ grouped by either broad cell type \ (Liver Broad), specific cell type \ (Liver Cells) and donor \ (Liver Donor). The default track displayed is \ Liver Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    immune
    endothelial
    fibroblast
    epithelial
    stem cell
    hepatocyte
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated \ with those classes. The colors will be purest in the \ Liver Cells subtrack,\ where the bars represent relatively pure cell types. They can give an overview\ of the cell composition within other categories in other subtracks as well.

    \ \ \ \ \ \

    Method

    \

    \ Fresh liver samples were taken from 5 neurologically deceased donors (NDD)\ deemed acceptable for liver transplantation. The caudate lobe of the liver was\ surgically separated and flushed with HTK solution to leave only tissue\ resident cells that were used to prepare a cell suspension for scRNA-seq\ analysis. Samples were prepared using 10x Genomics 3' v2 library kit and\ sequenced on the Illumina HiSeq 2500. A total of 8,444 transcriptional profiles\ were obtained for organ specific and non-organ specific cells from healthy\ hepatic tissue.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used \ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credit

    \

    \ Thanks to Sonya MacParland and to the many authors who worked on producing and\ publishing this data set. The data were integrated into the UCSC Genome Browser\ by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The UCSC work \ was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ MacParland SA, Liu JC, Ma XZ, Innes BT, Bartczak AM, Gage BK, Manuel J, Khuu N, Echeverri J, Linares\ I et al.\ \ Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations.\ Nat Commun. 2018 Oct 22;9(1):4383.\ PMID: 30348985; PMC: PMC6197289

    \ singleCell 1 barChartBars B-cell Cholangiocyte Endothelial Erythroid Hepatocyte Kupffer Stellate T/NK-cell\ barChartColors #dc7b91 #908ffd #075bdb #d3c4db #af01af #d92b07 #e7cbbe #eb364f\ barChartLimit 1.5\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/liverMacParland/BroadCellType.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/liverMacParland/BroadCellType.bb\ defaultLabelFields name\ html liverMacParland\ labelFields name,name2\ longLabel Liver cells binned by broad cell type from MacParland et al 2018\ parent liverMacParland\ shortLabel Liver Broad\ track liverMacParlandBroadCellType\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=human-liver&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ liverMacParlandCellType Liver Cells bigBarChart Liver cells binned by cell type from MacParland et al 2018 3 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=human-liver&gene=$$

    Description

    \

    \ This track shows data from \ Single cell RNA sequencing of human liver reveals distinct intrahepatic\ macrophage populations. Liver tissue was analyzed using droplet-based \ single-cell RNA-sequencing (scRNA-seq) and subsequent clustering distinguished 20\ hepatic cell populations based on their identified marker genes found in\ MacParland et al., 2018.

    \ \

    \ There are three bar chart tracks in this track collection with liver cells\ grouped by either broad cell type \ (Liver Broad), specific cell type \ (Liver Cells) and donor \ (Liver Donor). The default track displayed is \ Liver Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    immune
    endothelial
    fibroblast
    epithelial
    stem cell
    hepatocyte
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated \ with those classes. The colors will be purest in the \ Liver Cells subtrack,\ where the bars represent relatively pure cell types. They can give an overview\ of the cell composition within other categories in other subtracks as well.

    \ \ \ \

    Relevant Figures From MacParland et al., 2018

    \ \

    \ Map of the human liver and its associated cell types. The liver is constructed\ of hepatic lobules which are composed of a portal triad (hepatic artery, the\ portal vein and the bile duct), hepatocytes aligned between a capillary\ network, and a central vein.\ \

    \ \ Human Liver Map\ MacParland et al. Nat\ Commun. 2018. / CC BY 4.0\ \ \ \

    Method

    \

    \ Fresh liver samples were taken from 5 neurologically deceased donors (NDD)\ deemed acceptable for liver transplantation. The caudate lobe of the liver was\ surgically separated and flushed with HTK solution to leave only tissue\ resident cells that were used to prepare a cell suspension for scRNA-seq\ analysis. Samples were prepared using 10x Genomics 3' v2 library kit and\ sequenced on the Illumina HiSeq 2500. A total of 8,444 transcriptional profiles\ were obtained for organ specific and non-organ specific cells from healthy\ hepatic tissue.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used \ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credit

    \

    \ Thanks to Sonya MacParland and to the many authors who worked on producing and\ publishing this data set. The data were integrated into the UCSC Genome Browser\ by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The UCSC work \ was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ MacParland SA, Liu JC, Ma XZ, Innes BT, Bartczak AM, Gage BK, Manuel J, Khuu N, Echeverri J, Linares\ I et al.\ \ Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations.\ Nat Commun. 2018 Oct 22;9(1):4383.\ PMID: 30348985; PMC: PMC6197289

    \ singleCell 1 barChartBars B_cell cholangiocyte erythroid_cell hepatocyte macrophage_(inflammatory) liver_sinusoidal_endothelial_1_(LSEC_1) liver_sinusoidal_endothelial_2,3_(LSEC_2,3) natural_killer_like macrophage_(non-inflammatory) plasma_B_cell portal_endothelial_cell stellate_cell T_cell_alpha/beta T_cell_gamma/delta_1 T_cell_gamma/delta_2\ barChartColors #f1798a #908ffd #d3c4db #af01af #d42c0d #5e97d5 #5d8fe8 #f0798a #e3725c #c27d9a #58d05c #e7cbbe #e93650 #e87a8c #cc7d95\ barChartLimit 1.5\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/liverMacParland/cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/liverMacParland/cell_type.bb\ defaultLabelFields name\ html liverMacParland\ labelFields name,name2\ longLabel Liver cells binned by cell type from MacParland et al 2018\ parent liverMacParland\ shortLabel Liver Cells\ track liverMacParlandCellType\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=human-liver&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility pack\ liverMacParlandDonor Liver Donor bigBarChart Liver cells binned by organ donor from MacParland et al 2018 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=human-liver&gene=$$

    Description

    \

    \ This track shows data from \ Single cell RNA sequencing of human liver reveals distinct intrahepatic\ macrophage populations. Liver tissue was analyzed using droplet-based \ single-cell RNA-sequencing (scRNA-seq) and subsequent clustering distinguished 20\ hepatic cell populations based on their identified marker genes found in\ MacParland et al., 2018.

    \ \

    \ There are three bar chart tracks in this track collection with liver cells\ grouped by either broad cell type \ (Liver Broad), specific cell type \ (Liver Cells) and donor \ (Liver Donor). The default track displayed is \ Liver Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    immune
    endothelial
    fibroblast
    epithelial
    stem cell
    hepatocyte
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated \ with those classes. The colors will be purest in the \ Liver Cells subtrack,\ where the bars represent relatively pure cell types. They can give an overview\ of the cell composition within other categories in other subtracks as well.

    \ \ \ \

    Relevant Figures From MacParland et al., 2018

    \ \

    \ Contribution of cells from each liver sample to each cell cluster. Note that\ the liver number corresponds to the donor number (e.g. Liver 1 = Donor 1).

    \ \

    \ \ Cell Cluster Cell\ Proportions\ MacParland et al. Nat\ Commun. 2018. / CC BY 4.0

    \ \
    \ \

    \ t-SNE plot of human liver resident cells colored by source donor (Liver 1-5)\ and labeled with cluster number.

    \ \

    \ \ t-SNE Plot of Liver Cell\ Clusters\ MacParland et al. Nat\ Commun. 2018. / CC BY 4.0

    \ \ \

    Method

    \

    \ Fresh liver samples were taken from 5 neurologically deceased donors (NDD)\ deemed acceptable for liver transplantation. The caudate lobe of the liver was\ surgically separated and flushed with HTK solution to leave only tissue\ resident cells that were used to prepare a cell suspension for scRNA-seq\ analysis. Samples were prepared using 10x Genomics 3' v2 library kit and\ sequenced on the Illumina HiSeq 2500. A total of 8,444 transcriptional profiles\ were obtained for organ specific and non-organ specific cells from healthy\ hepatic tissue.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used \ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credit

    \

    \ Thanks to Sonya MacParland and to the many authors who worked on producing and\ publishing this data set. The data were integrated into the UCSC Genome Browser\ by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The UCSC work \ was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ MacParland SA, Liu JC, Ma XZ, Innes BT, Bartczak AM, Gage BK, Manuel J, Khuu N, Echeverri J, Linares\ I et al.\ \ Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations.\ Nat Commun. 2018 Oct 22;9(1):4383.\ PMID: 30348985; PMC: PMC6197289

    \ singleCell 1 barChartBars P1TLH P2TLH P3TLH P4TLH P5TLH\ barChartColors #ae3f5a #9112a6 #ad03ae #dd3751 #d63856\ barChartLimit 1.5\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/liverMacParland/donor.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/liverMacParland/donor.bb\ defaultLabelFields name\ html liverMacParland\ labelFields name,name2\ longLabel Liver cells binned by organ donor from MacParland et al 2018\ parent liverMacParland\ shortLabel Liver Donor\ track liverMacParlandDonor\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=human-liver&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ liverMacParland Liver MacParland Liver single cell sequencing from MacParland et al 2018 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track shows data from \ Single cell RNA sequencing of human liver reveals distinct intrahepatic\ macrophage populations. Liver tissue was analyzed using droplet-based \ single-cell RNA-sequencing (scRNA-seq) and subsequent clustering distinguished 20\ hepatic cell populations based on their identified marker genes found in\ MacParland et al., 2018.

    \ \

    \ There are three bar chart tracks in this track collection with liver cells\ grouped by either broad cell type \ (Liver Broad), specific cell type \ (Liver Cells) and donor \ (Liver Donor). The default track displayed is \ Liver Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    immune
    endothelial
    fibroblast
    epithelial
    stem cell
    hepatocyte
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated \ with those classes. The colors will be purest in the \ Liver Cells subtrack,\ where the bars represent relatively pure cell types. They can give an overview\ of the cell composition within other categories in other subtracks as well.

    \ \ \

    \ The default track displayed is liver RNA grouped by cell type.

    \ \ \

    Method

    \

    \ Fresh liver samples were taken from 5 neurologically deceased donors (NDD)\ deemed acceptable for liver transplantation. The caudate lobe of the liver was\ surgically separated and flushed with HTK solution to leave only tissue\ resident cells that were used to prepare a cell suspension for scRNA-seq\ analysis. Samples were prepared using 10x Genomics 3' v2 library kit and\ sequenced on the Illumina HiSeq 2500. A total of 8,444 transcriptional profiles\ were obtained for organ specific and non-organ specific cells from healthy\ hepatic tissue.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used \ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on \ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \ \

    Credit

    \

    \ Thanks to Sonya MacParland and to the many authors who worked on producing and\ publishing this data set. The data were integrated into the UCSC Genome Browser\ by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The UCSC work \ was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ MacParland SA, Liu JC, Ma XZ, Innes BT, Bartczak AM, Gage BK, Manuel J, Khuu N, Echeverri J, Linares\ I et al.\ \ Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations.\ Nat Commun. 2018 Oct 22;9(1):4383.\ PMID: 30348985; PMC: PMC6197289

    \ singleCell 0 group singleCell\ longLabel Liver single cell sequencing from MacParland et al 2018\ shortLabel Liver MacParland\ superTrack on\ track liverMacParland\ visibility hide\ lovdComp LOVD Variants bigBed 4 + Leiden Open Variation Database Public Variants 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \
    \

    NOTE:
    \ LOVD is intended for use primarily by physicians and other\ professionals concerned with genetic disorders, by genetics researchers, and\ by advanced students in science and medicine. While the LOVD database is\ open to the public, users seeking information about a personal medical or\ genetic condition are urged to consult with a qualified physician for\ diagnosis and for answers to personal questions. Further, please be\ sure to visit the LOVD web site for the very latest, as they are continually \ updating data.

    \ \

    DOWNLOADS:
    \ LOVD databases are owned by their respective curators\ and are not available for download or mirroring \ by any third party without their permission. Batch queries on this track are only available via the\ UCSC Beacon API (see below). See also the\ LOVD web site\ for a list of database installations and the respective curators.

    \ \

    \ This track shows the genomic positions of all public entries in public\ installations of the Leiden Open Variation Database system (LOVD) and the effect of the \ variant, if annotated. \ Due to the copyright restrictions of the LOVD databases, UCSC is not allowed to\ host any further information. To get details on a variant (bibliographic\ reference, phenotype, disease, patient, etc.), follow the\ "Link to LOVD" to the central server at Leiden, which will then redirect you\ to the details page on the particular LOVD server reporting this variant.\

    \ \

    \ Since Apr 2020, similar to the ClinVar track, the data is split into two subtracks, for variants\ with a length of < 50 bp and >= 50 bp, respectively.\

    \ \

    \ LOVD is a flexible, freely-available tool for gene-centered collection and\ display of DNA variations. It is not a database itself, but rather a platform\ where curators store and analyze data. While the LOVD team and the biggest LOVD\ sites are run at the Leiden University Medical Center, LOVD installations and their\ curators are spread over the whole world. Most LOVD databases report at least \ some of their content back to Leiden to allow global cross-database search, which\ is, among others, exported to this UCSC Genome Browser track every month.\

    \

    \ A few LOVD databases are entirely missing from this track. Reasons include configuration issues and\ intentionally blocked data search. During the last check in November 2019, the following databases\ did not export any variants:\

    \ \ Curators who want to share data in their database so it is present in this track can find more\ details in the LOVD FAQ.

    \ \ \

    Batch queries

    \

    The LOVD data is not available for download or for batch queries in the Table Browser. \ However, it is available for programmatic access via the Global\ Alliance Beacon API, a web service that accepts queries in the form\ (genome, chromosome, position, allele) and returns "true" or "false" depending\ on whether there is information about this allele in the database. For more details see our \ Beacon Server.

    \ \

    \ To find all LOVD databases that contain variants of a given gene, you can get a list of databases by\ constructing a url in the format geneSymbol.lovd.nl, for example,\ tp53.lovd.nl. You can\ then use the LOVD API to retrieve more detailed information from a particular database. See the\ LOVD FAQ.

    \ \

    Display Conventions and Configuration

    \ \

    \ Genomic locations of LOVD variation entries are labeled with the gene symbol\ and the description of the mutation according to Human Gene Variation Society\ standards. For instance, the label AGRN:c.172G>A means that the cDNA of AGRN is\ mutated from G to A at position 172.\

    \ \

    \ Since October 2017, the functional effect for variants is shown on the details page, if annotated.\ The possible values are:\

      \
    • notClassified
      • \
    • functionAffected
      • \
    • notThisDisease
      • \
    • notAnyDisease
      • \
    • functionProbablyAffected
      • \
    • functionProbablyNotAffected
      • \
    • functionNotAffected
      • \
    • unknown
      • \
    \ LOVD does not use the term "pathogenic", please see the HGVS Terminology page for\ more details.

    \ \

    \ All other information is shown on the respective LOVD variation page, accessible via the\ "Link to LOVD" above.\

    \ \

    Methods

    \ \

    \ The mappings displayed in this track were provided by LOVD.\

    \ \

    Credits

    \ \

    \ Thanks to the LOVD team, Ivo Fokkema, Peter Taschner, Johan den Dunnen, and all LOVD curators who\ gave permission to show their data.

    \ \

    References

    \ \

    \ Fokkema IF, Taschner PE, Schaafsma GC, Celli J, Laros JF, den Dunnen JT.\ \ LOVD v.2.0: the next generation in gene variant databases.\ Hum Mutat. 2011 May;32(5):557-63.\ PMID: 21520333\

    \ phenDis 1 compositeTrack on\ group phenDis\ html lovdComp\ longLabel Leiden Open Variation Database Public Variants\ shortLabel LOVD Variants\ tableBrowser off lovdComp\ track lovdComp\ type bigBed 4 +\ visibility hide\ lrg LRG Regions bigBed 12 + Locus Reference Genomic (LRG) / RefSeqGene Sequences Mapped to Dec. 2013 (GRCh38/hg38) Assembly 0 100 72 167 38 163 211 146 0 0 0 http://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml

    Description

    \

    \ Locus Reference Genomic (LRG)\ sequences are manually curated, stable DNA sequences that surround a\ locus (typically a gene) and provide an unchanging coordinate system\ for reporting sequence variants. They are not necessarily identical\ to the corresponding sequence in a particular reference genome\ assembly (such as Dec. 2013 (GRCh38/hg38)), but can be mapped to each version of a\ reference genome assembly in order to convert between the stable LRG\ variant coordinates and the various assembly coordinates.\

    \ \

    \ We import the data from the LRG database at the EBI. \ The NCBI RefSeqGene database is almost identical to LRG, \ but it may contain a few more sequences. See the NCBI documentation.\

    \ \

    \ Each LRG record also includes at least one stable transcript\ on which variants may be reported. These transcripts\ appear in the LRG Transcripts track in the Gene and Gene Predictions\ track section.

    \ \

    Methods

    \

    \ LRG sequences are suggested by the community studying a locus (for example,\ Locus-Specific Database curators, research laboratories, mutation consortia).\ LRG curators then examine the submitted transcript as well as other known\ transcripts at the locus, in the context of alignment and public expression\ data.\ For more information on the selection and annotation process, see the \ LRG FAQ,\ (Dalgleish, et al.) and (MacArthur, et al.).\

    \ \

    Credits

    \

    \ This track was produced at UCSC using\ LRG XML files.\ Thanks to\ LRG collaborators\ for making these data available.\

    \ \

    References

    \

    \ Dalgleish R, Flicek P, Cunningham F, Astashyn A, Tully RE, Proctor G, Chen Y, McLaren WM, Larsson P,\ Vaughan BW et al.\ \ Locus Reference Genomic sequences: an improved basis for describing human DNA variants.\ Genome Med. 2010 Apr 15;2(4):24.\ PMID: 20398331; PMC: PMC2873802 \

    \ \

    \ MacArthur JA, Morales J, Tully RE, Astashyn A, Gil L, Bruford EA, Larsson P, Flicek P, Dalgleish R,\ Maglott DR et al.\ \ Locus Reference Genomic: reference sequences for the reporting of clinically relevant sequence\ variants.\ Nucleic Acids Res. 2014 Jan;42(Database issue):D873-8.\ PMID: 24285302; PMC: PMC3965024\

    \ map 1 baseColorDefault diffBases\ baseColorUseSequence lrg\ color 72,167,38\ group map\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Locus Reference Genomic (LRG) / RefSeqGene Sequences Mapped to Dec. 2013 (GRCh38/hg38) Assembly\ noScoreFilter .\ searchIndex name,ncbiAcc\ shortLabel LRG Regions\ showDiffBasesAllScales .\ track lrg\ type bigBed 12 +\ url http://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml\ urlLabel Link to LRG report:\ urls hgncId="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" ncbiAcc="https://www.ncbi.nlm.nih.gov/nuccore/$$"\ visibility hide\ lrgTranscriptAli LRG Transcripts bigPsl Locus Reference Genomic (LRG) / RefSeqGene Fixed Transcript Annotations 0 100 54 125 29 127 127 127 0 0 0 http://ftp.ebi.ac.uk/pub/databases/lrgex/$<_lrgParent>.xml#transcripts_anchor

    Description

    \

    \ This track shows the fixed (unchanging) transcript(s) associated with\ each \ Locus Reference Genomic (LRG) sequence.\ LRG\ sequences are manually curated, stable DNA sequences that surround a\ locus (typically a gene) and provide an unchanging coordinate system\ for reporting sequence variants. They are not necessarily identical\ to the corresponding sequence in a particular reference genome\ assembly (such as Dec. 2013 (GRCh38/hg38)), but can be mapped to each version of a\ reference genome assembly in order to convert between the stable LRG\ variant coordinates and the various assembly coordinates.\

    \

    \ We import the data from the LRG database at the EBI. \ The NCBI RefSeqGene database is almost identical to LRG, \ but it may contain a few more sequences. See the NCBI documentation.\

    \ \

    \ The LRG Regions track, in the Mapping and Sequencing Tracks section,\ includes more information about the LRG including the HGNC gene symbol\ for the gene at that locus, source of the LRG sequence, and summary of\ differences between LRG sequence and the genome assembly.\

    \ \

    Methods

    \

    \ LRG sequences are suggested by the community studying a locus (for example,\ Locus-Specific Database curators, research laboratories, mutation consortia).\ LRG curators then examine the submitted transcript as well as other known\ transcripts at the locus, in the context of alignment and public expression\ data.\ For more information on the selection and annotation process, see the \ LRG FAQ,\ (Dalgleish, et al.) and (MacArthur, et al.).\

    \ \

    Credits

    \

    \ This track was produced at UCSC using\ LRG XML files.\ Thanks to\ LRG\ collaborators for making these data available.\

    \ \

    References

    \

    \ Dalgleish R, Flicek P, Cunningham F, Astashyn A, Tully RE, Proctor G, Chen Y, McLaren WM, Larsson P,\ Vaughan BW et al.\ \ Locus Reference Genomic sequences: an improved basis for describing human DNA variants.\ Genome Med. 2010 Apr 15;2(4):24.\ PMID: 20398331; PMC: PMC2873802\

    \ \

    \ MacArthur JA, Morales J, Tully RE, Astashyn A, Gil L, Bruford EA, Larsson P, Flicek P, Dalgleish R,\ Maglott DR et al.\ \ Locus Reference Genomic: reference sequences for the reporting of clinically relevant sequence\ variants.\ Nucleic Acids Res. 2014 Jan;42(Database issue):D873-8.\ PMID: 24285302; PMC: PMC3965024\

    \ genes 1 altColor 127,127,127\ baseColorDefault genomicCodons\ baseColorUseSequence lfExtra\ bigDataUrl /gbdb/hg38/bbi/lrgBigPsl.bb\ color 54,125,29\ group genes\ html lrgTranscriptAli\ indelDoubleInsert on\ indelPolyA on\ indelQueryInsert on\ longLabel Locus Reference Genomic (LRG) / RefSeqGene Fixed Transcript Annotations\ mouseOver ${name}: ${ncbiTranscript} ${ensemblTranscript} ${ncbiProtein} ${ensemblProtein} ${geneName}\ searchIndex name\ shortLabel LRG Transcripts\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ skipEmptyFields on\ skipFields mouseOver\ track lrgTranscriptAli\ type bigPsl\ url http://ftp.ebi.ac.uk/pub/databases/lrgex/$<_lrgParent>.xml#transcripts_anchor\ urlLabel Link to LRG transcript\ urls ncbiTranscript=https://www.ncbi.nlm.nih.gov/nuccore/$$ ensemblTranscript=http://www.ensembl.org/Multi/Search/Results?site=ensembl_all;q=$$ ncbiProtein=https://www.ncbi.nlm.nih.gov/protein/$$ ensemblProtein=http://www.ensembl.org/Multi/Search/Results?site=ensembl_all;q=$$\ visibility hide\ lungTravaglini2020CellType10x Lung Cells bigBarChart Lung cells 10x method binned by merged cell type from Travaglini et al 2020 3 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=stanford-czb-hlca+droplet&gene=$$

    Description

    \

    \ This track displays data from A\ molecular cell atlas of the human lung from single-cell RNA\ sequencing. Using droplet-based and plate-based single-cell RNA\ sequencing (scRNA-seq), 58 lung cell type populations were identified: \ 15 epithelial, 9 endothelial, 9 stromal, and 25 immune. This dataset \ covers ~75,000 human cells across all lung tissue compartments and\ circulating blood.

    \ \

    \ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    secretory
    ciliated
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the Lung Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ singleCell 1 barChartBars smooth_muscle_(airway)_cell alveolar_Type_1_cell alveolar_Type_2_cell artery/vein_endothelial_cell airway_basal_cell basophil/mast_cell bronchial_vessel_cell capillary_endothelial_cell ciliated_cell club_cell dendritic_cell fibroblast goblet_cell lymphatic_cell lymphocyte macrophage/monocyte mucous_cell other/rare_cell pericyte smooth_muscle_(vascular)_cell\ barChartColors #be04bb #905d31 #0695bc #339a1b #4a4eb4 #c82c38 #c74050 #04bd03 #0371d4 #1451e7 #e41819 #af5022 #0950f5 #ab435d #fb344b #df2901 #2652d0 #3b4ebb #a05331 #bd05b9\ barChartLimit 5\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/lungTravaglini2020/droplet/cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/lungTravaglini2020/droplet/cell_type.bb\ defaultLabelFields name\ html lungTravaglini2020\ labelFields name,name2\ longLabel Lung cells 10x method binned by merged cell type from Travaglini et al 2020\ parent lungTravaglini2020\ shortLabel Lung Cells\ track lungTravaglini2020CellType10x\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=stanford-czb-hlca+droplet&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility pack\ lungTravaglini2020CellTypeFacs Lung Cells FACS bigBarChart Lung cells FACS method binned by merged cell type from Travaglini et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=stanford-czb-hlca+facs&gene=$$

    Description

    \

    \ This track displays data from A\ molecular cell atlas of the human lung from single-cell RNA\ sequencing. Using droplet-based and plate-based single-cell RNA\ sequencing (scRNA-seq), 58 lung cell type populations were identified: \ 15 epithelial, 9 endothelial, 9 stromal, and 25 immune. This dataset \ covers ~75,000 human cells across all lung tissue compartments and\ circulating blood.

    \ \

    \ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    secretory
    ciliated
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the Lung Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ singleCell 1 barChartBars smooth_muscle_(airway)_cell alveolar_Type_1_cell alveolar_Type_2_cell artery/vein_endothelial_cell airway_basal_cell basophil/mast_cell bronchial_vessel_cell capillary_endothelial_cell ciliated_cell club_cell dendritic_cell fibroblast goblet_cell lymphatic_cell lymphocyte macrophage/monocyte mucous_cell other/rare_cell pericyte smooth_muscle_(vascular)_cell\ barChartColors #be04bb #a63276 #0497be #23a218 #a33b7b #e5171b #7a555b #02be01 #0272d5 #2450d5 #d02a1e #af5021 #0750f6 #7e5164 #fd334a #df2901 #c5341d #bd356d #b514a7 #be04bb\ barChartLimit 900\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/lungTravaglini2020/facs/cell_type.stats\ barChartUnit count/cell\ bigDataUrl /gbdb/hg38/bbi/lungTravaglini2020/facs/cell_type.bb\ defaultLabelFields name\ html lungTravaglini2020\ labelFields name,name2\ longLabel Lung cells FACS method binned by merged cell type from Travaglini et al 2020\ parent lungTravaglini2020\ shortLabel Lung Cells FACS\ track lungTravaglini2020CellTypeFacs\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=stanford-czb-hlca+facs&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ lungTravaglini2020Compartment10x Lung Compart bigBarChart Lung cells 10x method binned by compartment from Travaglini et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=stanford-czb-hlca+droplet&gene=$$

    Description

    \

    \ This track displays data from A\ molecular cell atlas of the human lung from single-cell RNA\ sequencing. Using droplet-based and plate-based single-cell RNA\ sequencing (scRNA-seq), 58 lung cell type populations were identified: \ 15 epithelial, 9 endothelial, 9 stromal, and 25 immune. This dataset \ covers ~75,000 human cells across all lung tissue compartments and\ circulating blood.

    \ \

    \ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    secretory
    ciliated
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the Lung Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ singleCell 1 barChartBars endothelial epithelial immune stromal\ barChartColors #0ab906 #0894bb #dd2a03 #ad4d2d\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/lungTravaglini2020/droplet/compartment.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/lungTravaglini2020/droplet/compartment.bb\ defaultLabelFields name\ html lungTravaglini2020\ labelFields name,name2\ longLabel Lung cells 10x method binned by compartment from Travaglini et al 2020\ parent lungTravaglini2020\ shortLabel Lung Compart\ track lungTravaglini2020Compartment10x\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=stanford-czb-hlca+droplet&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ lungTravaglini2020CompartmentFacs Lung Compart FACS bigBarChart Lung cells FACS method binned by compartment from Travaglini et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=stanford-czb-hlca+facs&gene=$$

    Description

    \

    \ This track displays data from A\ molecular cell atlas of the human lung from single-cell RNA\ sequencing. Using droplet-based and plate-based single-cell RNA\ sequencing (scRNA-seq), 58 lung cell type populations were identified: \ 15 epithelial, 9 endothelial, 9 stromal, and 25 immune. This dataset \ covers ~75,000 human cells across all lung tissue compartments and\ circulating blood.

    \ \

    \ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    secretory
    ciliated
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the Lung Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ singleCell 1 barChartBars endothelial epithelial immune stromal\ barChartColors #03bd02 #0497be #fc334b #b9149d\ barChartLimit 300\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/lungTravaglini2020/facs/compartment.stats\ barChartUnit count/cell\ bigDataUrl /gbdb/hg38/bbi/lungTravaglini2020/facs/compartment.bb\ defaultLabelFields name\ html lungTravaglini2020\ labelFields name,name2\ longLabel Lung cells FACS method binned by compartment from Travaglini et al 2020\ parent lungTravaglini2020\ shortLabel Lung Compart FACS\ track lungTravaglini2020CompartmentFacs\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=stanford-czb-hlca+facs&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ lungTravaglini2020DetailedCellType10x Lung Detail bigBarChart Lung cells 10x method binned by detailed cell type from Travaglini et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=stanford-czb-hlca+droplet&gene=$$

    Description

    \

    \ This track displays data from A\ molecular cell atlas of the human lung from single-cell RNA\ sequencing. Using droplet-based and plate-based single-cell RNA\ sequencing (scRNA-seq), 58 lung cell type populations were identified: \ 15 epithelial, 9 endothelial, 9 stromal, and 25 immune. This dataset \ covers ~75,000 human cells across all lung tissue compartments and\ circulating blood.

    \ \

    \ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    secretory
    ciliated
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the Lung Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ singleCell 1 barChartBars Adventitial_Fibroblast_P1 Adventitial_Fibroblast_P2 Adventitial_Fibroblast_P3 Airway_Smooth_Muscle_P1 Airway_Smooth_Muscle_P2 Airway_Smooth_Muscle_P3 Alveolar_Epithelial_Type_1_P1 Alveolar_Epithelial_Type_1_P2 Alveolar_Epithelial_Type_1_P3 Alveolar_Epithelial_Type_2_P1 Alveolar_Epithelial_Type_2_P2 Alveolar_Epithelial_Type_2_P3 Alveolar_Fibroblast_P1 Alveolar_Fibroblast_P2 Alveolar_Fibroblast_P3 Artery_P1 Artery_P2 Artery_P3 B_P1 B_P2 B_P3 Basal_P1 Basal_P2 Basal_P3 Basophil/Mast_1_P1 Basophil/Mast_1_P2 Basophil/Mast_1_P3 Basophil/Mast_2_P3 Bronchial_Vessel_1_P1 Bronchial_Vessel_1_P3 Bronchial_Vessel_2_P1 Bronchial_Vessel_2_P3 CD4+_Memory/Effector_T_P1 CD4+_Memory/Effector_T_P2 CD4+_Memory/Effector_T_P3 CD4+_Naive_T_P1 CD4+_Naive_T_P2 CD4+_Naive_T_P3 CD8+_Memory/Effector_T_P1 CD8+_Memory/Effector_T_P2 CD8+_Memory/Effector_T_P3 CD8+_Naive_T_P1 CD8+_Naive_T_P2 CD8+_Naive_T_P3 Capillary_Aerocyte_P1 Capillary_Aerocyte_P2 Capillary_Aerocyte_P3 Capillary_Intermediate_1_P2 Capillary_Intermediate_2_P2 Capillary_P1 Capillary_P2 Capillary_P3 Ciliated_P1 Ciliated_P2 Ciliated_P3 Classical_Monocyte_P1 Classical_Monocyte_P2 Classical_Monocyte_P3 Club_P1 Club_P2 Club_P3 Differentiating_Basal_P1 Differentiating_Basal_P3 EREG+_Dendritic_P1 EREG+_Dendritic_P2 Fibromyocyte_P3 Goblet_P3 IGSF21+_Dendritic_P1 IGSF21+_Dendritic_P2 IGSF21+_Dendritic_P3 Intermediate_Monocyte_P2 Ionocyte_P3 Lipofibroblast_P1 Lymphatic_P1 Lymphatic_P2 Lymphatic_P3 Macrophage_P1 Macrophage_P2 Macrophage_P3 Mesothelial_P1 Mucous_P2 Mucous_P3 Myeloid_Dendritic_Type_1_P1 Myeloid_Dendritic_Type_1_P2 Myeloid_Dendritic_Type_1_P3 Myeloid_Dendritic_Type_2_P1 Myeloid_Dendritic_Type_2_P2 Myeloid_Dendritic_Type_2_P3 Myofibroblast_P1 Myofibroblast_P2 Myofibroblast_P3 Natural_Killer_T_P2 Natural_Killer_T_P3 Natural_Killer_P1 Natural_Killer_P2 Natural_Killer_P3 Neuroendocrine_P3 Nonclassical_Monocyte_P1 Nonclassical_Monocyte_P2 Nonclassical_Monocyte_P3 OLR1+_Classical_Monocyte_P2 Pericyte_P1 Pericyte_P2 Pericyte_P3 Plasma_P1 Plasma_P3 Plasmacytoid_Dendritic_P1 Plasmacytoid_Dendritic_P2 Plasmacytoid_Dendritic_P3 Platelet/Megakaryocyte_P1 Platelet/Megakaryocyte_P3 Proliferating_Basal_P1 Proliferating_Basal_P3 Proliferating_Macrophage_P1 Proliferating_Macrophage_P2 Proliferating_Macrophage_P3 Proliferating_NK/T_P2 Proliferating_NK/T_P3 Proximal_Basal_P3 Proximal_Ciliated_P3 Serous_P3 Signaling_Alveolar_Epithelial_Type_2_P3 TREM2+_Dendritic_P1 TREM2+_Dendritic_P3 Vascular_Smooth_Muscle_P2 Vascular_Smooth_Muscle_P3 Vein_P1 Vein_P2 Vein_P3\ barChartColors #c18a7a #d8b0a5 #aa502a #d15dca #b90eab #bc06b8 #dcd0c3 #965a2f #886036 #0596bc #0496bd #0695bc #e6cbc0 #ab5027 #ab5027 #b29a79 #36971e #588328 #ed7a8b #f2c5cc #e63750 #e4c4ce #695095 #b63c6a #e16d74 #c42f3c #cc2932 #c72e3a #d47e90 #d33a51 #96a27c #73bf65 #ea3750 #ee374c #f1374c #e53752 #f47989 #ea3750 #f3364c #ef374c #f87988 #f3364b #ed384b #f4364b #60cd5b #09b905 #15b00c #06bb04 #c18378 #0eb608 #0cb707 #10b409 #1b51de #0e6eca #0d6ecc #cf2733 #cf2530 #ca2936 #1851e2 #1851e2 #1d51dc #dea3b0 #1450e8 #f4c0b6 #ed6567 #cf65bb #0950f5 #f5bcbc #ea6769 #e96869 #dd1d21 #cad5df #d0afb4 #e3c8d0 #ab445d #c88194 #de2a02 #de2a02 #de2a02 #e0a3ad #2652cf #2452d2 #f3bfc1 #f09a9c #ec9d9f #ee9b9e #ef9b9e #dd1c21 #e6c7ca #d9adac #d27b8e #ef7c87 #ef7c87 #f0374b #ca4943 #ea3a4b #f2d9de #d92027 #d82128 #db1e24 #cc262e #d7aab5 #a25231 #b79276 #d1afb9 #974b62 #f5c3ca #f3a6b1 #f1a6b0 #eac3c3 #eca295 #e9d9e2 #8e88c3 #f0a190 #dd2a04 #dd2a04 #f2a8b0 #eaa6af #594ba7 #1b69c1 #a8b2e0 #0695bc #efa190 #db2b06 #d062c1 #bd06b8 #96aa71 #34991b #ab9b78\ barChartLimit 7\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/lungTravaglini2020/droplet/detailed_cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/lungTravaglini2020/droplet/detailed_cell_type.bb\ defaultLabelFields name\ html lungTravaglini2020\ labelFields name,name2\ longLabel Lung cells 10x method binned by detailed cell type from Travaglini et al 2020\ parent lungTravaglini2020\ shortLabel Lung Detail\ track lungTravaglini2020DetailedCellType10x\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=stanford-czb-hlca+droplet&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ lungTravaglini2020DetailedCellTypeFacs Lung Detail FACS bigBarChart Lung cells FACS method binned by detailed cell type from Travaglini et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=stanford-czb-hlca+facs&gene=$$

    Description

    \

    \ This track displays data from A\ molecular cell atlas of the human lung from single-cell RNA\ sequencing. Using droplet-based and plate-based single-cell RNA\ sequencing (scRNA-seq), 58 lung cell type populations were identified: \ 15 epithelial, 9 endothelial, 9 stromal, and 25 immune. This dataset \ covers ~75,000 human cells across all lung tissue compartments and\ circulating blood.

    \ \

    \ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    secretory
    ciliated
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the Lung Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ singleCell 1 barChartBars Adventitial_Fibroblast_P1 Adventitial_Fibroblast_P2 Adventitial_Fibroblast_P3 Airway_Smooth_Muscle_P1 Airway_Smooth_Muscle_P2 Airway_Smooth_Muscle_P3 Alveolar_Epithelial_Type_1_P1 Alveolar_Epithelial_Type_1_P2 Alveolar_Epithelial_Type_1_P3 Alveolar_Epithelial_Type_2_P1 Alveolar_Epithelial_Type_2_P2 Alveolar_Epithelial_Type_2_P3 Alveolar_Fibroblast_P1 Alveolar_Fibroblast_P2 Alveolar_Fibroblast_P3 Artery_P1 Artery_P2 Artery_P3 B_P1 B_P2 B_P3 Basal_P1 Basal_P2 Basal_P3 Basophil/Mast_1_P1 Basophil/Mast_1_P2 Basophil/Mast_1_P3 Bronchial_Vessel_1_P1 CD4+_Memory/Effector_T_P1 CD4+_Naive_T_P1 CD4+_Naive_T_P2 CD8+_Memory/Effector_T_P1 CD8+_Naive_T_P1 CD8+_Naive_T_P2 Capillary_Aerocyte_P1 Capillary_Aerocyte_P2 Capillary_Aerocyte_P3 Capillary_Intermediate_1_P2 Capillary_P1 Capillary_P2 Capillary_P3 Ciliated_P1 Ciliated_P2 Ciliated_P3 Classical_Monocyte_P1 Club_P1 Club_P2 Club_P3 Dendritic_P1 Differentiating_Basal_P3 Fibromyocyte_P3 Goblet_P1 Goblet_P2 Goblet_P3 IGSF21+_Dendritic_P2 IGSF21+_Dendritic_P3 Intermediate_Monocyte_P2 Intermediate_Monocyte_P3 Ionocyte_P3 Lipofibroblast_P1 Lymphatic_P1 Lymphatic_P2 Lymphatic_P3 Macrophage_P2 Macrophage_P3 Myeloid_Dendritic_Type_2_P3 Myofibroblast_P2 Myofibroblast_P3 Natural_Killer_T_P2 Natural_Killer_T_P3 Natural_Killer_P1 Natural_Killer_P2 Natural_Killer_P3 Neuroendocrine_P1 Neuroendocrine_P3 Neutrophil_P1 Neutrophil_P2 Neutrophil_P3 Nonclassical_Monocyte_P1 Nonclassical_Monocyte_P2 Pericyte_P1 Pericyte_P2 Pericyte_P3 Plasma_P3 Plasmacytoid_Dendritic_P1 Plasmacytoid_Dendritic_P2 Plasmacytoid_Dendritic_P3 Proliferating_NK/T_P2 Proliferating_NK/T_P3 Signaling_Alveolar_Epithelial_Type_2_P1 Signaling_Alveolar_Epithelial_Type_2_P3 Vascular_Smooth_Muscle_P1 Vascular_Smooth_Muscle_P2 Vascular_Smooth_Muscle_P3 Vein_P2\ barChartColors #a84b36 #a44e34 #aa4f2c #bd06b8 #b80daf #bc08b5 #a93276 #983e69 #a83177 #0596bc #0497bd #0496bd #ac4d2c #aa4f2a #ad4f26 #379323 #1ea518 #b08b8d #a14746 #d27977 #d57679 #be3372 #78488f #b63670 #e3181d #ea676b #e01a1e #7a555b #d93357 #d83555 #ec788e #d13755 #f6344d #ed3550 #1ca912 #07ba05 #1ea712 #06bb04 #21a515 #06bb05 #22a415 #0d6ecc #0471d3 #0f6dca #c13628 #2b50ce #1951e0 #2651d2 #dd7170 #a93c75 #b714a0 #768adb #0850f5 #5a8af9 #de7561 #d77966 #d47a68 #e4735c #c67ca1 #a34252 #8d4960 #71566c #ae8a92 #d92c07 #e5735b #d97571 #b38793 #b32e6e #f37989 #f0344f #f9344c #f8344c #f9344c #ba366e #d67a9b #bd3728 #e1a69e #d87869 #aa4237 #df7561 #bb0fa9 #b018a4 #bb12a5 #b88493 #d57877 #d87573 #eaa2a5 #f2798a #f5788a #0596bd #0397be #bb08b4 #b217a0 #bc09b3 #41892b\ barChartLimit 1200\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/lungTravaglini2020/facs/detailed_cell_type.stats\ barChartUnit count/cell\ bigDataUrl /gbdb/hg38/bbi/lungTravaglini2020/facs/detailed_cell_type.bb\ defaultLabelFields name\ html lungTravaglini2020\ labelFields name,name2\ longLabel Lung cells FACS method binned by detailed cell type from Travaglini et al 2020\ parent lungTravaglini2020\ shortLabel Lung Detail FACS\ track lungTravaglini2020DetailedCellTypeFacs\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=stanford-czb-hlca+facs&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ lungTravaglini2020Donor10x Lung Donor bigBarChart Lung cells 10x method binned by organ donor from Travaglini et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=stanford-czb-hlca+droplet&gene=$$

    Description

    \

    \ This track displays data from A\ molecular cell atlas of the human lung from single-cell RNA\ sequencing. Using droplet-based and plate-based single-cell RNA\ sequencing (scRNA-seq), 58 lung cell type populations were identified: \ 15 epithelial, 9 endothelial, 9 stromal, and 25 immune. This dataset \ covers ~75,000 human cells across all lung tissue compartments and\ circulating blood.

    \ \

    \ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    secretory
    ciliated
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the Lung Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ singleCell 1 barChartBars 1 2 3\ barChartColors #da2b07 #d12425 #ba352f\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/lungTravaglini2020/droplet/donor.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/lungTravaglini2020/droplet/donor.bb\ defaultLabelFields name\ html lungTravaglini2020\ labelFields name,name2\ longLabel Lung cells 10x method binned by organ donor from Travaglini et al 2020\ parent lungTravaglini2020\ shortLabel Lung Donor\ track lungTravaglini2020Donor10x\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=stanford-czb-hlca+droplet&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ lungTravaglini2020DonorFacs Lung Donor FACS bigBarChart Lung cells FACS method binned by organ donor from Travaglini et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=stanford-czb-hlca+facs&gene=$$

    Description

    \

    \ This track displays data from A\ molecular cell atlas of the human lung from single-cell RNA\ sequencing. Using droplet-based and plate-based single-cell RNA\ sequencing (scRNA-seq), 58 lung cell type populations were identified: \ 15 epithelial, 9 endothelial, 9 stromal, and 25 immune. This dataset \ covers ~75,000 human cells across all lung tissue compartments and\ circulating blood.

    \ \

    \ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    secretory
    ciliated
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the Lung Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ singleCell 1 barChartBars 1 2 3\ barChartColors #168cb3 #1f86aa #0b93b9\ barChartLimit 200\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/lungTravaglini2020/facs/donor.stats\ barChartUnit count/cell\ bigDataUrl /gbdb/hg38/bbi/lungTravaglini2020/facs/donor.bb\ defaultLabelFields name\ html lungTravaglini2020\ labelFields name,name2\ longLabel Lung cells FACS method binned by organ donor from Travaglini et al 2020\ parent lungTravaglini2020\ shortLabel Lung Donor FACS\ track lungTravaglini2020DonorFacs\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=stanford-czb-hlca+facs&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ lungTravaglini2020GatingFacs Lung Gating FACS bigBarChart Lung cells FACS method binned by gating from Travaglini et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=stanford-czb-hlca+facs&gene=$$

    Description

    \

    \ This track displays data from A\ molecular cell atlas of the human lung from single-cell RNA\ sequencing. Using droplet-based and plate-based single-cell RNA\ sequencing (scRNA-seq), 58 lung cell type populations were identified: \ 15 epithelial, 9 endothelial, 9 stromal, and 25 immune. This dataset \ covers ~75,000 human cells across all lung tissue compartments and\ circulating blood.

    \ \

    \ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    secretory
    ciliated
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the Lung Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ singleCell 1 barChartBars Bcell CD45+_Epcam- CD45-_Epcam+ CD45-_Epcam- NK cd4 cd8 monocyte nan wbc\ barChartColors #944c4a #f7334c #0a93b9 #a52b8a #d63852 #bc3b56 #da3654 #b63b31 #138eb3 #cf3651\ barChartLimit 600\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/lungTravaglini2020/facs/gating.stats\ barChartUnit count/cell\ bigDataUrl /gbdb/hg38/bbi/lungTravaglini2020/facs/gating.bb\ defaultLabelFields name\ html lungTravaglini2020\ labelFields name,name2\ longLabel Lung cells FACS method binned by gating from Travaglini et al 2020\ parent lungTravaglini2020\ shortLabel Lung Gating FACS\ track lungTravaglini2020GatingFacs\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=stanford-czb-hlca+facs&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ lungTravaglini2020HalfDetailedCellType10x Lung Half Det bigBarChart Lung cells 10x method binned by halfway detailed cell type from Travaglini et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=stanford-czb-hlca+droplet&gene=$$

    Description

    \

    \ This track displays data from A\ molecular cell atlas of the human lung from single-cell RNA\ sequencing. Using droplet-based and plate-based single-cell RNA\ sequencing (scRNA-seq), 58 lung cell type populations were identified: \ 15 epithelial, 9 endothelial, 9 stromal, and 25 immune. This dataset \ covers ~75,000 human cells across all lung tissue compartments and\ circulating blood.

    \ \

    \ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    secretory
    ciliated
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the Lung Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ singleCell 1 barChartBars Adventitial_Fibroblast Airway_Smooth_Muscle Alveolar_Epithelial_Type_1 Alveolar_Epithelial_Type_2 Alveolar_Fibroblast Artery B Basal Basophil/Mast_1 Basophil/Mast_2 Bronchial_Vessel_1 Bronchial_Vessel_2 CD4+_Memory/Effector_T CD4+_Naive_T CD8+_Memory/Effector_T CD8+_Naive_T Capillary Capillary_Aerocyte Capillary_Intermediate_1 Capillary_Intermediate_2 Ciliated Classical_Monocyte Club Differentiating_Basal EREG+_Dendritic Fibromyocyte Goblet IGSF21+_Dendritic Intermediate_Monocyte Ionocyte Lipofibroblast Lymphatic Macrophage Mesothelial Mucous Myeloid_Dendritic_Type_1 Myeloid_Dendritic_Type_2 Myofibroblast Natural_Killer Natural_Killer_T Neuroendocrine Nonclassical_Monocyte OLR1+_Classical_Monocyte Pericyte Plasma Plasmacytoid_Dendritic Platelet/Megakaryocyte Proliferating_Basal Proliferating_Macrophage Proliferating_NK/T Proximal_Basal Proximal_Ciliated Serous Signaling_Alveolar_Epithelial_Type_2 TREM2+_Dendritic Vascular_Smooth_Muscle Vein\ barChartColors #aa4f2a #be04bb #905d31 #0695bc #ac5026 #37971d #e83750 #914680 #c72c38 #c72e3a #d03a52 #82b46d #f3364c #e93750 #f4364c #f4364b #0ab906 #0ab806 #06bb04 #c18378 #0471d3 #cd2734 #1451e7 #1750e5 #e4181b #cf65bb #0950f5 #e01b1d #dd1d21 #cad5df #d0afb4 #ab435d #df2901 #e0a3ad #2652d0 #dd1d21 #dd1c21 #b3414a #e03e48 #f27b87 #f2d9de #da1f25 #cc262e #a05331 #974a62 #ec7989 #eba295 #9088c2 #dd2a03 #e87c89 #594ba7 #1b69c1 #a8b2e0 #0695bc #dc2a05 #bd05b9 #35991b\ barChartLimit 6\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/lungTravaglini2020/droplet/half_merged.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/lungTravaglini2020/droplet/half_merged.bb\ defaultLabelFields name\ html lungTravaglini2020\ labelFields name,name2\ longLabel Lung cells 10x method binned by halfway detailed cell type from Travaglini et al 2020\ parent lungTravaglini2020\ shortLabel Lung Half Det\ track lungTravaglini2020HalfDetailedCellType10x\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=stanford-czb-hlca+droplet&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ lungTravaglini2020HalfDetailedFacs Lung Half Det FACS bigBarChart Lung cells FACS method binned by merged cell type from Travaglini et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=stanford-czb-hlca+facs&gene=$$

    Description

    \

    \ This track displays data from A\ molecular cell atlas of the human lung from single-cell RNA\ sequencing. Using droplet-based and plate-based single-cell RNA\ sequencing (scRNA-seq), 58 lung cell type populations were identified: \ 15 epithelial, 9 endothelial, 9 stromal, and 25 immune. This dataset \ covers ~75,000 human cells across all lung tissue compartments and\ circulating blood.

    \ \

    \ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    secretory
    ciliated
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the Lung Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ singleCell 1 barChartBars Adventitial_Fibroblast Airway_Smooth_Muscle Alveolar_Epithelial_Type_1 Alveolar_Epithelial_Type_2 Alveolar_Fibroblast Artery B Basal Basophil/Mast_1 Bronchial_Vessel_1 CD4+_Memory/Effector_T CD4+_Naive_T CD8+_Memory/Effector_T CD8+_Naive_T Capillary Capillary_Aerocyte Capillary_Intermediate_1 Ciliated Classical_Monocyte Club Dendritic Differentiating_Basal Fibromyocyte Goblet IGSF21+_Dendritic Intermediate_Monocyte Ionocyte Lipofibroblast Lymphatic Macrophage Myeloid_Dendritic_Type_2 Myofibroblast Natural_Killer Natural_Killer_T Neuroendocrine Neutrophil Nonclassical_Monocyte Pericyte Plasma Plasmacytoid_Dendritic Proliferating_NK/T Signaling_Alveolar_Epithelial_Type_2 Vascular_Smooth_Muscle Vein\ barChartColors #ab4e2b #be04bb #a63276 #0497bd #ad4f25 #20a516 #ae3f3f #a13b7d #e5171b #7a555b #d93357 #dd3554 #d13755 #f7344d #06bb04 #06bb04 #06bb04 #0272d5 #c13628 #2450d5 #dd7170 #a93c75 #b714a0 #0750f6 #de7661 #e6725a #c67ca1 #a34252 #7e5164 #db2b06 #d97571 #aa3c5a #fb344b #f2344e #bc356d #c5341d #c93319 #b514a7 #b88493 #c82f2c #f1344e #0496bd #be04bb #41892b\ barChartLimit 900\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/lungTravaglini2020/facs/half_merged.stats\ barChartUnit count/cell\ bigDataUrl /gbdb/hg38/bbi/lungTravaglini2020/facs/half_merged.bb\ defaultLabelFields name\ html lungTravaglini2020\ labelFields name,name2\ longLabel Lung cells FACS method binned by merged cell type from Travaglini et al 2020\ parent lungTravaglini2020\ shortLabel Lung Half Det FACS\ track lungTravaglini2020HalfDetailedFacs\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=stanford-czb-hlca+facs&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ lungTravaglini2020LabelFacs Lung Label FACS bigBarChart Lung cells FACS method binned by label from Travaglini et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=stanford-czb-hlca+facs&gene=$$

    Description

    \

    \ This track displays data from A\ molecular cell atlas of the human lung from single-cell RNA\ sequencing. Using droplet-based and plate-based single-cell RNA\ sequencing (scRNA-seq), 58 lung cell type populations were identified: \ 15 epithelial, 9 endothelial, 9 stromal, and 25 immune. This dataset \ covers ~75,000 human cells across all lung tissue compartments and\ circulating blood.

    \ \

    \ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    secretory
    ciliated
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the Lung Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ singleCell 1 barChartBars Ecpam,_CD45 Epcam_(+) Epcam_(-) na\ barChartColors #138eb3 #0a93b9 #f03351 #c93952\ barChartLimit 600\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/lungTravaglini2020/facs/label.stats\ barChartUnit count/cell\ bigDataUrl /gbdb/hg38/bbi/lungTravaglini2020/facs/label.bb\ defaultLabelFields name\ html lungTravaglini2020\ labelFields name,name2\ longLabel Lung cells FACS method binned by label from Travaglini et al 2020\ parent lungTravaglini2020\ shortLabel Lung Label FACS\ track lungTravaglini2020LabelFacs\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=stanford-czb-hlca+facs&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ lungTravaglini2020Location10x Lung Locat bigBarChart Lung cells 10x method binned by location from Travaglini et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=stanford-czb-hlca+droplet&gene=$$

    Description

    \

    \ This track displays data from A\ molecular cell atlas of the human lung from single-cell RNA\ sequencing. Using droplet-based and plate-based single-cell RNA\ sequencing (scRNA-seq), 58 lung cell type populations were identified: \ 15 epithelial, 9 endothelial, 9 stromal, and 25 immune. This dataset \ covers ~75,000 human cells across all lung tissue compartments and\ circulating blood.

    \ \

    \ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    secretory
    ciliated
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the Lung Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ singleCell 1 barChartBars blood distal medial proximal\ barChartColors #ec364e #d62c0d #d02426 #0b92b9\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/lungTravaglini2020/droplet/location.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/lungTravaglini2020/droplet/location.bb\ defaultLabelFields name\ html lungTravaglini2020\ labelFields name,name2\ longLabel Lung cells 10x method binned by location from Travaglini et al 2020\ parent lungTravaglini2020\ shortLabel Lung Locat\ track lungTravaglini2020Location10x\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=stanford-czb-hlca+droplet&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ lungTravaglini2020LocationFacs Lung Locat FACS bigBarChart Lung cells FACS method binned by location from Travaglini et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=stanford-czb-hlca+facs&gene=$$

    Description

    \

    \ This track displays data from A\ molecular cell atlas of the human lung from single-cell RNA\ sequencing. Using droplet-based and plate-based single-cell RNA\ sequencing (scRNA-seq), 58 lung cell type populations were identified: \ 15 epithelial, 9 endothelial, 9 stromal, and 25 immune. This dataset \ covers ~75,000 human cells across all lung tissue compartments and\ circulating blood.

    \ \

    \ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    secretory
    ciliated
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the Lung Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ singleCell 1 barChartBars blood distal medial proximal\ barChartColors #c93952 #138eb4 #178bb1 #0497bd\ barChartLimit 400\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/lungTravaglini2020/facs/location.stats\ barChartUnit count/cell\ bigDataUrl /gbdb/hg38/bbi/lungTravaglini2020/facs/location.bb\ defaultLabelFields name\ html lungTravaglini2020\ labelFields name,name2\ longLabel Lung cells FACS method binned by location from Travaglini et al 2020\ parent lungTravaglini2020\ shortLabel Lung Locat FACS\ track lungTravaglini2020LocationFacs\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=stanford-czb-hlca+facs&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ lungTravaglini2020MagneticSelection10x Lung Mag Sel bigBarChart Lung cells 10x method binned by magnetic.selection from Travaglini et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=stanford-czb-hlca+droplet&gene=$$

    Description

    \

    \ This track displays data from A\ molecular cell atlas of the human lung from single-cell RNA\ sequencing. Using droplet-based and plate-based single-cell RNA\ sequencing (scRNA-seq), 58 lung cell type populations were identified: \ 15 epithelial, 9 endothelial, 9 stromal, and 25 immune. This dataset \ covers ~75,000 human cells across all lung tissue compartments and\ circulating blood.

    \ \

    \ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    secretory
    ciliated
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the Lung Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ singleCell 1 barChartBars blood epithelial immune_and_endothelial stromal\ barChartColors #ec364e #2c7ea1 #de1c1e #dd2a04\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/lungTravaglini2020/droplet/magnetic.selection.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/lungTravaglini2020/droplet/magnetic.selection.bb\ defaultLabelFields name\ html lungTravaglini2020\ labelFields name,name2\ longLabel Lung cells 10x method binned by magnetic.selection from Travaglini et al 2020\ parent lungTravaglini2020\ shortLabel Lung Mag Sel\ track lungTravaglini2020MagneticSelection10x\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=stanford-czb-hlca+droplet&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ lungTravaglini2020Organ10x Lung Organ bigBarChart Lung cells 10x method binned by organ from Travaglini et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=stanford-czb-hlca+droplet&gene=$$

    Description

    \

    \ This track displays data from A\ molecular cell atlas of the human lung from single-cell RNA\ sequencing. Using droplet-based and plate-based single-cell RNA\ sequencing (scRNA-seq), 58 lung cell type populations were identified: \ 15 epithelial, 9 endothelial, 9 stromal, and 25 immune. This dataset \ covers ~75,000 human cells across all lung tissue compartments and\ circulating blood.

    \ \

    \ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    secretory
    ciliated
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the Lung Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ singleCell 1 barChartBars blood lung\ barChartColors #ec364e #d22a18\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/lungTravaglini2020/droplet/organ.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/lungTravaglini2020/droplet/organ.bb\ defaultLabelFields name\ html lungTravaglini2020\ labelFields name,name2\ longLabel Lung cells 10x method binned by organ from Travaglini et al 2020\ parent lungTravaglini2020\ shortLabel Lung Organ\ track lungTravaglini2020Organ10x\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=stanford-czb-hlca+droplet&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ lungTravaglini2020OrganFacs Lung Organ FACS bigBarChart Lung cells FACS method binned by organ from Travaglini et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=stanford-czb-hlca+facs&gene=$$

    Description

    \

    \ This track displays data from A\ molecular cell atlas of the human lung from single-cell RNA\ sequencing. Using droplet-based and plate-based single-cell RNA\ sequencing (scRNA-seq), 58 lung cell type populations were identified: \ 15 epithelial, 9 endothelial, 9 stromal, and 25 immune. This dataset \ covers ~75,000 human cells across all lung tissue compartments and\ circulating blood.

    \ \

    \ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    secretory
    ciliated
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the Lung Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ singleCell 1 barChartBars blood lung\ barChartColors #c93952 #108fb5\ barChartLimit 600\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/lungTravaglini2020/facs/organ.stats\ barChartUnit count/cell\ bigDataUrl /gbdb/hg38/bbi/lungTravaglini2020/facs/organ.bb\ defaultLabelFields name\ html lungTravaglini2020\ labelFields name,name2\ longLabel Lung cells FACS method binned by organ from Travaglini et al 2020\ parent lungTravaglini2020\ shortLabel Lung Organ FACS\ track lungTravaglini2020OrganFacs\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=stanford-czb-hlca+facs&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ lungTravaglini2020Sample10x Lung Sample bigBarChart Lung cells 10x method binned by sample from Travaglini et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=stanford-czb-hlca+droplet&gene=$$

    Description

    \

    \ This track displays data from A\ molecular cell atlas of the human lung from single-cell RNA\ sequencing. Using droplet-based and plate-based single-cell RNA\ sequencing (scRNA-seq), 58 lung cell type populations were identified: \ 15 epithelial, 9 endothelial, 9 stromal, and 25 immune. This dataset \ covers ~75,000 human cells across all lung tissue compartments and\ circulating blood.

    \ \

    \ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    secretory
    ciliated
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the Lung Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ singleCell 1 barChartBars blood_1 blood_3 distal_1a distal_2 distal_3 medial_2 proximal_3\ barChartColors #ed364e #eb364e #dc2a05 #d12424 #d42d0e #d02426 #0b92b9\ barChartLimit 4\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/lungTravaglini2020/droplet/sample.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/lungTravaglini2020/droplet/sample.bb\ defaultLabelFields name\ html lungTravaglini2020\ labelFields name,name2\ longLabel Lung cells 10x method binned by sample from Travaglini et al 2020\ parent lungTravaglini2020\ shortLabel Lung Sample\ track lungTravaglini2020Sample10x\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=stanford-czb-hlca+droplet&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ lungTravaglini2020SampleFacs Lung Sample FACS bigBarChart Lung cells FACS method binned by sample from Travaglini et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=stanford-czb-hlca+facs&gene=$$

    Description

    \

    \ This track displays data from A\ molecular cell atlas of the human lung from single-cell RNA\ sequencing. Using droplet-based and plate-based single-cell RNA\ sequencing (scRNA-seq), 58 lung cell type populations were identified: \ 15 epithelial, 9 endothelial, 9 stromal, and 25 immune. This dataset \ covers ~75,000 human cells across all lung tissue compartments and\ circulating blood.

    \ \

    \ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    secretory
    ciliated
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the Lung Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ singleCell 1 barChartBars blood_1 distal_1a distal_1b distal_2 distal_3 medial_2 medial_3 proximal_3\ barChartColors #c93952 #0795bb #9c3c84 #2482a5 #1090b6 #188aaf #1d89af #0497bd\ barChartLimit 400\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/lungTravaglini2020/facs/sample.stats\ barChartUnit count/cell\ bigDataUrl /gbdb/hg38/bbi/lungTravaglini2020/facs/sample.bb\ defaultLabelFields name\ html lungTravaglini2020\ labelFields name,name2\ longLabel Lung cells FACS method binned by sample from Travaglini et al 2020\ parent lungTravaglini2020\ shortLabel Lung Sample FACS\ track lungTravaglini2020SampleFacs\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=stanford-czb-hlca+facs&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ lungTravaglini2020 Lung Travaglini Lung cells from from Travaglini et al 2020 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track displays data from A\ molecular cell atlas of the human lung from single-cell RNA\ sequencing. Using droplet-based and plate-based single-cell RNA\ sequencing (scRNA-seq), 58 lung cell type populations were identified: \ 15 epithelial, 9 endothelial, 9 stromal, and 25 immune. This dataset \ covers ~75,000 human cells across all lung tissue compartments and\ circulating blood.

    \ \

    \ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    secretory
    ciliated
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the Lung Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Method

    \

    \ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ singleCell 0 group singleCell\ longLabel Lung cells from from Travaglini et al 2020\ shortLabel Lung Travaglini\ superTrack on\ track lungTravaglini2020\ visibility hide\ mane MANE bigGenePred MANE Select Plus Clinical: Representative transcript from RefSeq & GENCODE 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The Matched Annotation from\ NCBI and EMBL-EBI (MANE) project aims to produce a matched set of \ high-confidence transcripts that are identically annotated between RefSeq (NCBI) and \ Ensembl/GENCODE (led by EMBL-EBI). Transcripts for MANE are chosen by a combination of \ automated and manual methods based on conservation, expression levels, clinical significance, \ and other factors. Transcripts are matched between the NCBI RefSeq and Ensembl/GENCODE annotations\ based on the GRCh38 genome assembly, with precise 5' and 3' ends defined by high-throughput\ sequencing or other available data.

    \

    This track is automatically updated, see the source data version above for the current version\ number. MANE include almost all human protein-coding genes and genes of clinical relevance, including genes in the\ American\ College of Medical Genetics and Genomics (ACMG) Secondary Findings list (SF) v3.0. It includes \ both MANE Select and MANE Plus Clinical transcripts. MANE\ Plus Clinical items are colored red.\

    \ For more information on the different gene tracks, including MANE vs GENCODE or RefSeq,\ see our Genes FAQ.

    \ \

    Data Access

    \

    \ The raw data can be explored interactively with the Table Browser, or the Data Integrator. For computational analysis, genome annotations are stored in\ a bigGenePred file that can be downloaded from the\ download\ server. Regional or genome-wide annotations can be converted from binary data to human readable\ text using our command line utility bigBedToBed which can be compiled from source code or\ downloaded as a precompiled binary for your system. Files and instructions can be found in the\ utilities directory.\ \ The utility can be used to obtain features within a given range, for example:

    \ bigBedToBed -chrom=chr6 -start=0 -end=1000000 http://hgdownload.soe.ucsc.edu/gbdb/hg38/mane/mane.bb stdout\ \

    \ Download links for MANE:\ ftp://ftp.ncbi.nlm.nih.gov/refseq/MANE\

    \ \

    \ Please refer to our Data Access FAQ\ for more information or our mailing list for archived user questions.

    \ \

    Credits

    \

    \ Thank you to the RefSeq project at NCBI and the Ensembl/GENCODE project at EMBL-EBI.\ You can contact the authors directly at \ MANE-help@ncbi.nlm.nih.gov\ or \ mane-help@ebi.ac.uk.

    \ \

    References

    \

    \ Morales J, Pujar S, Loveland JE, Astashyn A, Bennett R, Berry A, Cox E, Davidson C, Ermolaeva O,\ Farrell CM et al.\ \ A joint NCBI and EMBL-EBI transcript set for clinical genomics and research.\ Nature. 2022 Apr;604(7905):310-315.\ PMID: 35388217; PMC: PMC9007741\

    \ genes 1 bigDataUrl /gbdb/hg38/mane/mane.bb\ dataVersion /gbdb/hg38/mane/README_versions.txt\ defaultLabelFields geneName2\ group genes\ itemRgb on\ labelFields geneName2,name,ensemblProtAcc,geneName,ncbiId,ncbiProtAcc,ncbiGene\ longLabel MANE Select Plus Clinical: Representative transcript from RefSeq & GENCODE\ maxItems 5000\ mouseOver $ncbiId, $name\ searchIndex name\ searchTrix /gbdb/hg38/mane/mane.ix\ shortLabel MANE\ skipFields cdsStartStat,cdsEndStat,exonFrames,geneType,type\ track mane\ type bigGenePred\ urls name2="https://www.ensembl.org/Homo_sapiens/Transcript/Summary?t=$$" geneName="https://www.ensembl.org/homo_sapiens/Gene/Summary?g=$$&db=core" geneName2="https://www.genecards.org/cgi-bin/carddisp.pl?gene=$$" ensemblProtAcc="https://www.ensembl.org/Homo_sapiens/Transcript/Summary?t=$$" ncbiId="https://www.ncbi.nlm.nih.gov/nuccore/$$" ncbiProtAcc="https://www.ncbi.nlm.nih.gov/nuccore/$$"\ visibility hide\ mappability Mappability Hoffman Lab Umap and Bismap Mappability 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ These tracks indicate regions with uniquely mappable reads of particular lengths before and after\ bisulfite conversion. Both Umap and Bismap tracks contain single-read mappability and multi-read\ mappability tracks for four different read lengths: 24 bp, 36 bp, 50 bp, and 100 bp.

    \

    \ You can use these tracks for many purposes, including filtering unreliable signal from\ sequencing assays. The Bismap track can help filter unreliable signal from sequencing assays\ involving bisulfite conversion, such as whole-genome bisulfite sequencing or reduced representation\ bisulfite sequencing.

    \ \ \

    Bismap single-read and multi-read mappability

    \
    \
    Bismap single-read mappability
    \
    \

    These tracks mark any region of the bisulfite-converted genome that is uniquely mappable by\ at least one k-mer on the specified strand. Mappability of the forward strand was\ generated by converting all instances of cytosine to thymine. Similarly, mappability of the\ reverse strand was generated by converting all instances of guanine to adenine.

    \

    To calculate the single-read mappability, you must find the overlap of a given region with\ the region that is uniquely mappable on both strands. Regions not uniquely mappable on both\ strands or have a low multi-read mappability might bias the downstream analysis.

    \
    Bismap multi-read mappability
    \
    \

    These tracks represent the probability that a randomly selected k-mer which overlaps\ with a given position is uniquely mappable. Multi-read mappability track is calculated for\ k-mers that are uniquely mappable on both strands, and thus there is no strand\ specification.

    \
    \ \ \

    Umap single-read and multi-read mappability

    \
    \
    Umap single-read mappability
    \
    \

    These tracks mark any region of the genome that is uniquely mappable by at least one\ k-mer. To calculate the single-read mappability, you must find the overlap of a given\ region with this track.

    \
    Umap multi-read mappability
    \
    \

    These tracks represent the probability that a randomly selected k-mer which overlaps\ with a given position is uniquely mappable.

    \
    \ \

    For greater detail and explanatory diagrams, see the\ preprint, the\ Umap and Bismap project website, or the\ Umap and Bismap software\ documentation.\ \

    Data Access

    \

    \ The raw data can be explored interactively with the Table Browser, or the Data Integrator. For automated analysis, genome annotation is stored in a bigBed\ or bigWig file that can be downloaded from the\ download\ server. Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed or bigWigToWig, which can be compiled from the source code or\ downloaded as a precompiled binary for your system. Instructions for downloading source code and\ binaries can be found here.\ The tool can also be used to obtain only features within a given range, for example:

    \ bigBedToBed -chrom=chr6 -start=0 -end=1000000\ http://hgdownload.soe.ucsc.edu/gbdb/hg38/hoffmanMappability/k24.Unique.Mappability.bb stdout\
    \ bigWigToWig -chrom=chr6 -start=0 -end=1000000\ http://hgdownload.soe.ucsc.edu/gbdb/hg38/hoffmanMappability/k24.Umap.MultiTrackMappability.bw\ stdout\

    \ Please refer to our mailing list archives for questions, or our\ Data Access FAQ for more\ information.

    \ \

    Credits

    \

    \ Anshul Kundaje (Stanford\ University) created the original Umap software in MATLAB. The original Umap repository is available\ here.\ Mehran Karimzadeh (Michael Hoffman\ lab, Princess Margaret Cancer Centre) implemented the Python version of Umap and added features,\ including Bismap.

    \ \

    References

    \

    \ Karimzadeh M, Ernst C, Kundaje A, Hoffman MM.,\ Umap and Bismap:\ quantifying genome and methylome mappability\ bioRxiv bioRxiv, p. 095463, 2016.; doi: https://doi.org/10.1101/095463.

    \ map 0 group map\ longLabel Hoffman Lab Umap and Bismap Mappability\ shortLabel Mappability\ superTrack on\ track mappability\ mastermind Mastermind Variants bigBed 9 + Genomenon Mastermind Variants extracted from full text publications 1 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track shows most variants found in the full text of scientific publications gathered by\ Genomenon Mastermind. Mastermind\ uses a software that searches for disease-gene-variant associations in the \ scientific literature. The genome browser track shows only if a\ variant has been indexed by the search engine.\

    \ \

    \ To get details on a variant (bibliographic references, disease, etc)\ click it and follow the "Protein change and link to details" at the top\ of the details page. Mouse over an item to show the gene and amino acid change and the \ scores MMCNT1, MMCNT2 and MMCNT3, explained below.\

    \ \

    \ Genomenon Mastermind Genomic Search Engine is a commercial database of variants\ likely to be mentioned in full text scientific articles. A limited number of\ queries per week is free for healthcare professionals and researchers, if they register on the\ signup\ page page. Advanced features require a license for the\ Mastermind Professional Edition, \ which contains the same content but allows more comprehensive searches.\

    \ \

    Display Conventions and Configuration

    \ \

    \ Genomic locations of variants are labeled with the nucleotide change.\ Hover over the features to see the gene, the amino acid change and the scores MMCNT1, MMCNT2 and \ MMCNT3, described below. All other information is shown on the respective Mastermind variant detail\ page, accessible via the "Protein change and link to details" at the top of the details page. The\ features are colored based on their evidence:\

    \ \

    As suggested by Genomenom, we added a filter on all variants, so the data are not exactly identical \ to their website. We skip \ variants with more than one nucleotide and a MMCNT of 0 and where the variant is not an indel. \ This means that for longer variants, only variants are shown that are explicitly\ mentioned in the papers. This makes the data more specific.\

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorLevel of support
    High: at least one paper mentions this exact cDNA change
    Medium: at least two papers mention a variant that leads to the same amino acid change
    Low: only a single paper mentions a variant that leads to the same amino acid change
    \

    \ \

    \ The three numbers that are shown on the mouse-over and the details page have the following meaning (MM=Mastermind):\

      \
    • MMCNT1: cDNA-level exact matches. This is the number of articles that mention the variant at the nucleotide level in either the title/abstract or the full-text.\
    • MMCNT2: cDNA-level possible matches. This is the number of articles with nucleotide-level matches (from 1) plus articles with protein-level matches in which the publication did not specify the cDNA-level change, meaning they could be referring to this nucleotide-level variant but there is insufficient data in these articles to determine conclusively.\
    • MMCNT3: This is the number of articles citing any variant resulting in the same biological effect as this variant. This includes the articles from MMCNT1 and MMCNT2 plus articles with alternative cDNA-level variants that result in the same protein effect.\
    \ On the track settings page one can filter on these scores under the display mode section by entering\ a minimum number of articles for each kind of evidence.\ \

    \ \

    Data access

    \

    \ The raw data can be explored interactively with the Table Browser\ or the Data Integrator. The data can be accessed from scripts through our \ API, the track name is "mastermind".\ \

    \ For automated download and analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from\ our download server.\ The file for this track is called mastermind.bb. Individual\ regions or the whole genome annotation can be obtained using our tool bigBedToBed\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool\ can also be used to obtain only features within a given range, e.g. \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/bbi/mastermind.bb -chrom=chr21 -start=0 -end=100000000 stdout

    \

    \ \

    \ Previous versions of this track can be found on our archive download server.\

    \ \

    Methods

    \ \

    The Mastermind Cited Variants file was downloaded,\ converted to BED format with scripts that are available in our \ Git\ repository and converted to a bigBed file with the UCSC genome browser tool\ bedToBigBed.

    \ \

    This track is automatically updated two weeks after every Mastermind CVR release, which happens every three months.

    \ \ \

    Credits

    \ \

    \ Thanks to Mark Kiel, Steve Schwartz and Clayton Wheeler from Genomenon for making these data available.\

    \ \

    References

    \

    \ Chunn LM, Nefcy DC, Scouten RW, Tarpey RP, Chauhan G, Lim MS, Elenitoba-Johnson KSJ, Schwartz SA,\ Kiel MJ.\ \ Mastermind: A Comprehensive Genomic Association Search Engine for Empirical Evidence Curation and\ Genetic Variant Interpretation.\ Front Genet. 2020 Nov 13;11:577152. doi:\ 10.3389/fgene.2020.577152.\ PMID: 33281875; PMC: PMC7691534\

    \ phenDis 1 bigDataUrl /gbdb/hg38/bbi/mastermind.bb\ dataVersion /gbdb/$D/bbi/mastermindRelease.txt\ exonNumbers off\ filter.mmcnt1 0\ filter.mmcnt2 0\ filter.mmcnt3 0\ itemRgb on\ longLabel Genomenon Mastermind Variants extracted from full text publications\ maxItems 1000000\ maxWindowCoverage 40000\ mouseOverField _mouseOver\ noScoreFilter on\ parent varsInPubs pack\ shortLabel Mastermind Variants\ track mastermind\ type bigBed 9 +\ urls url=$$\ visibility dense\ singleCellMerged Merged Cells bigBarChart Single cell RNA expression levels cell types from many organs 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track displays single-cell data from 12 papers covering 14 organs. Cells are grouped \ together by organ and cell type. The cell types are based on annotations published alongside\ the papers. These were curated at UCSC as much as possible to use the same cell type \ terminologies across papers and organs. In some cases, we merged together small populations\ of cells annotated as distinct and related types into a single type so as to have enough cells \ to call gene expression levels accurate.\ \ The gene expression levels are normalized so that the total level of expression for all genes in a\ single cell or cell type adds up to one million. \

    \ \

    Display Conventions and Configuration

    \

    \ The cell types are colored by which class they belong to according to the following table.\

    \

    \ Please note, the coloring algorithm allows cells that show some mixed characteristics to =\ show blended colors so there will be some color variation within a class. In addition,\ cells with less than 100 transcripts will be a lighter shade and less \ concentrated in color to represent a low number of transcripts. \ \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    neural
    adipose
    fibroblast
    immune
    muscle
    hepatocyte
    trophoblast
    secretory
    ciliated
    epithelial
    endothelial
    glia
    stem cell or progenitor cell
    \

    \ \

    Methods

    \

    \ Each organ or tissue was integrated and curated into the Genome Browser indiviually. \ \

    \ \ All components were normalized to be in parts per million using the\ matrixNormalize command available from UCSC. Metadata was cleaned up using the\ tabToTabDir tool. The major clean-ups were unpacking abbreviations, replacing\ jargon with standard English, choosing shorted terms to shorten long labels,\ labeling outliers, etc. Before integration we invited the original data\ producers as well as local biologists and informaticions to view the\ data.

    \ \

    Credits

    \

    \ Many thanks to the data contributing labs for sharing their high quality research. \ Thanks to the Cell Browser team including Matt Speir and Max Haeussler, for their work\ in integratinging these datasets into the Cell Browser. In most cases, their efforts were\ ahead of our own and we could leverage their work making the job much easier. Within the\ Genome Browser group, Jim Kent did the initial wrangling, and Brittney Wick did substantial data\ cleanup and coordination with the labs.\

    \ \

    References

    \ \ \ \

    \ Baron M, Veres A, Wolock SL, Faust AL, Gaujoux R, Vetere A, Ryu JH, Wagner BK, Shen-Orr SS, Klein AM\ et al.\ \ A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell\ Population Structure.\ Cell Syst. 2016 Oct 26;3(4):346-360.e4.\ PMID: 27667365; PMC: PMC5228327

    \ \ \ \

    \ Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R,\ Zhang F et al.\ \ A human cell atlas of fetal gene expression.\ Science. 2020 Nov 13;370(6518).\ PMID: 33184181; PMC: PMC7780123\

    \ \

    \ Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L,\ Steemers FJ et al.\ \ The single-cell transcriptional landscape of mammalian organogenesis.\ Nature. 2019 Feb;566(7745):496-502.\ PMID: 30787437; PMC: PMC6434952\

    \ \ \ \

    \ De Micheli AJ, Spector JA, Elemento O, Cosgrove BD.\ \ A reference single-cell transcriptomic atlas of human skeletal muscle tissue reveals bifurcated\ muscle stem cell populations.\ Skelet Muscle. 2020 Jul 6;10(1):19.\ PMID: 32624006; PMC: PMC7336639

    \ \ \ \

    \ Hao Y, Hao S, Andersen-Nissen E, Mauck WM 3rd, Zheng S, Butler A, Lee MJ, Wilk AJ, Darby C, Zager M\ et al.\ \ Integrated analysis of multimodal single-cell data.\ Cell. 2021 Jun 24;184(13):3573-3587.e29.\ PMID: 34062119; PMC: PMC8238499\

    \ \ \ \

    \ Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\ Polanski K, Heinig M, Lee M et al.\ \ Cells of the adult human heart.\ Nature. 2020 Dec;588(7838):466-472.\ PMID: 32971526; PMC: PMC7681775\

    \ \ \ \ \

    \ MacParland SA, Liu JC, Ma XZ, Innes BT, Bartczak AM, Gage BK, Manuel J, Khuu N, Echeverri J, Linares\ I et al.\ \ Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations.\ Nat Commun. 2018 Oct 22;9(1):4383.\ PMID: 30348985; PMC: PMC6197289

    \ \ \ \ \

    \ Solé-Boldo L, Raddatz G, Schütz S, Mallm JP, Rippe K, Lonsdorf AS, Rodríguez-Paredes\ M, Lyko F.\ \ Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming.\ Commun Biol. 2020 Apr 23;3(1):188.\ PMID: 32327715; PMC: PMC7181753\

    \ \ \ \

    \ Stewart BJ, Ferdinand JR, Young MD, Mitchell TJ, Loudon KW, Riding AM, Richoz N, Frazer GL,\ Staniforth JUL, Vieira Braga FA et al.\ \ Spatiotemporal immune zonation of the human kidney.\ Science. 2019 Sep 27;365(6460):1461-1466.\ PMID: 31604275; PMC: PMC7343525\

    \ \ \ \

    \ Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\ et al.\ \ A molecular cell atlas of the human lung from single-cell RNA sequencing.\ Nature. 2020 Nov;587(7835):619-625.\ PMID: 33208946; PMC: PMC7704697\

    \ \ \ \

    \ Velmeshev D, Schirmer L, Jung D, Haeussler M, Perez Y, Mayer S, Bhaduri A, Goyal N, Rowitch DH,\ Kriegstein AR.\ \ Single-cell genomics identifies cell type-specific molecular changes in autism.\ Science. 2019 May 17;364(6441):685-689.\ PMID: 31097668; PMC: PMC7678724\

    \ \ \ \

    \ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\

    \ \ \

    \ Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG.\ \ Single-cell transcriptome analysis reveals differential nutrient absorption functions in human\ intestine.\ J Exp Med. 2020 Feb 3;217(2).\ PMID: 31753849; PMC: PMC7041720

    \ singleCell 1 barChartBars Blood_B Blood_CD4_T Blood_CD8_T Blood_DC Blood_Mono Blood_NK Blood_other Blood_other_T Brain_AST-FB Brain_AST-PP Brain_Endothelial Brain_IN-PV Brain_IN-SST Brain_IN-SV2C Brain_IN-VIP Brain_L2/3 Brain_L4 Brain_L5/6 Brain_L5/6-CC Brain_Microglia Brain_Neu-NRGN-I Brain_Neu-NRGN-II Brain_Neu-mat Brain_OPC Brain_Oligodendrocytes Colon_Enteriendocrine Colon_Enterocyte Colon_Goblet Colon_Paneth-like Colon_Progenitor Colon_Stem_Cell Colon_TA Fetal_AFP_ALB_positive_cells Fetal_Acinar_cells Fetal_Adrenocortical_cells Fetal_Amacrine_cells Fetal_Antigen_presenting_cells Fetal_Astrocytes Fetal_Bipolar_cells Fetal_Bronchiolar_and_alveolar_epithelial_cells Fetal_CCL19_CCL21_positive_cells Fetal_CLC_IL5RA_positive_cells Fetal_CSH1_CSH2_positive_cells Fetal_Cardiomyocytes Fetal_Chromaffin_cells Fetal_Ciliated_epithelial_cells Fetal_Corneal_and_conjunctival_epithelial_cells Fetal_Ductal_cells Fetal_ELF3_AGBL2_positive_cells Fetal_ENS_glia Fetal_ENS_neurons Fetal_Endocardial_cells Fetal_Epicardial_fat_cells Fetal_Erythroblasts Fetal_Excitatory_neurons Fetal_Extravillous_trophoblasts Fetal_Ganglion_cells Fetal_Goblet_cells Fetal_Granule_neurons Fetal_Hematopoietic_stem_cells Fetal_Hepatoblasts Fetal_Horizontal_cells Fetal_IGFBP1_DKK1_positive_cells Fetal_Inhibitory_interneurons Fetal_Inhibitory_neurons Fetal_Intestinal_epithelial_cells Fetal_Islet_endocrine_cells Fetal_Lens_fibre_cells Fetal_Limbic_system_neurons Fetal_Lymphatic_endothelial_cells Fetal_Lymphoid_cells Fetal_MUC13_DMBT1_positive_cells Fetal_Megakaryocytes Fetal_Mesangial_cells Fetal_Mesothelial_cells Fetal_Metanephric_cells Fetal_Microglia Fetal_Myeloid_cells Fetal_Neuroendocrine_cells Fetal_Oligodendrocytes Fetal_PAEP_MECOM_positive_cells Fetal_PDE11A_FAM19A2_positive_cells Fetal_PDE1C_ACSM3_positive_cells Fetal_Parietal_and_chief_cells Fetal_Photoreceptor_cells Fetal_Purkinje_neurons Fetal_Retinal_pigment_cells Fetal_Retinal_progenitors_and_Muller_glia Fetal_SATB2_LRRC7_positive_cells Fetal_SKOR2_NPSR1_positive_cells Fetal_SLC24A4_PEX5L_positive_cells Fetal_SLC26A4_PAEP_positive_cells Fetal_STC2_TLX1_positive_cells Fetal_Satellite_cells Fetal_Schwann_cells Fetal_Skeletal_muscle_cells Fetal_Smooth_muscle_cells Fetal_Squamous_epithelial_cells Fetal_Stellate_cells Fetal_Stromal_cells Fetal_Sympathoblasts Fetal_Syncytiotrophoblasts_and_villous_cytotrophoblasts Fetal_Thymic_epithelial_cells Fetal_Thymocytes Fetal_Trophoblast_giant_cells Fetal_Unipolar_brush_cells Fetal_Ureteric_bud_cells Fetal_Vascular_endothelial_cells Fetal_Visceral_neurons Heart_Adipocytes Heart_Atrial_Cardiomyocyte Heart_Endothelial Heart_Fibroblast Heart_Lymphoid Heart_Mesothelial Heart_Myeloid Heart_Neuronal Heart_NotAssigned Heart_Pericytes Heart_Smooth_muscle_cells Heart_Ventricular_Cardiomyocyte Heart_doublets Ileum_Enteriendocrine Ileum_Enterocyte Ileum_Goblet Ileum_Paneth-like Ileum_Progenitor Ileum_Stem_Cell Ileum_TA Kidney_Ascending_vasa_recta_endothelium Kidney_B_cell Kidney_CD4_T_cell Kidney_CD8_T_cell Kidney_Connecting_tubule Kidney_Descending_vasa_recta_endothelium Kidney_Epithelial_progenitor_cell Kidney_Fibroblast Kidney_Glomerular_endothelium Kidney_Intercalated_cell Kidney_MNP Kidney_NK_cell Kidney_Other_immune Kidney_Pelvic_epithelium Kidney_Peritubular_capillary_endothelium Kidney_Podocyte Kidney_Principal_cell Kidney_Proximal_tubule Kidney_Thick_ascending_limb_of_Loop_of_Henle Kidney_Transitional_urothelium Liver_B_cell Liver_Cholangiocyte Liver_Erythroid Liver_Hepatocyte Liver_Inflammatory_Macs Liver_LSEC_1 Liver_LSEC_2,3 Liver_NK-like Liver_Non-inflammatory_Macs Liver_Plasma Liver_Portal_endothelial Liver_Stellate Liver_abT_cell Liver_gdT_cell_1 Liver_gdT_cell_2 Lung_Airway_Smooth_Muscle Lung_Alveolar_Epithelial_Type_1 Lung_Alveolar_Epithelial_Type_2 Lung_Artery_or_Vein Lung_Basal Lung_Basophil/Mast Lung_Bronchial_Vessel Lung_Capillary Lung_Ciliated Lung_Club Lung_Dendretic Lung_Fibroblast Lung_Goblet Lung_Lymphatic Lung_Lymphocyte Lung_Macrophage_or_Monocyte Lung_Mucous Lung_Other/Rare Lung_Pericyte Lung_Vascular_Smooth_Muscle Muscle_ACTA1+_Mature_skeletal_muscle Muscle_ACTA2+_MYH11+_MYL9+_Smooth_muscle_cells Muscle_APOD+_CFD+_PLAC9+_Adipocytes Muscle_C1QA+_CD74+_Macrophages Muscle_CD36+_VWF+_Platelets Muscle_CLDN5+_PECAM1+_Endothelial Muscle_COL1A1+_Fibroblasts Muscle_DCN+_GSN+_MYOC+_Fibroblasts Muscle_FBN1+_MFAP5+_CD55+_Fibroblasts Muscle_HBA1+_Erythroblasts Muscle_ICAM1+_SELE+_VCAM1+_Endothelial Muscle_IL7R+_PTPRC+_NKG7+_B/T/NK_cells Muscle_PAX7+_DLK1+_MuSCs_and_progenitors Muscle_PAX7low_MYF5+_MuSCs_and_progenitors Muscle_RGS5+_MYL9+_Pericytes Muscle_S100A9+_LYZ+_Inflammatory_macrophages Pancreas_acinar Pancreas_activated_stellate Pancreas_alpha Pancreas_beta Pancreas_delta Pancreas_ductal Pancreas_endothelial Pancreas_epsilon Pancreas_gamma Pancreas_other Pancreas_quiescent_stellate Placenta_CD4+_T Placenta_CD8+_T Placenta_EVT Placenta_Endo Placenta_MAIT Placenta_Myeloid Placenta_NK Placenta_Other_immune Placenta_SCT Placenta_VCT Placenta_dP Placenta_dS Placenta_fFB Rectum_Enteriendocrine Rectum_Enterocyte Rectum_Goblet Rectum_Paneth-like Rectum_Progenitor Rectum_Stem_Cell Rectum_TA Skin_Diff._Keratinocytes Skin_EpSC_and_undiff._progenitors Skin_Erythrocytes Skin_Lymphatic_EC Skin_Macrophages+DC Skin_Melanocytes Skin_Mesenchymal Skin_Pericytes Skin_Pro-inflammatory Skin_Secretory-papilliary Skin_Secretory-reticular Skin_T_cells Skin_Vascular_EC\ barChartColors #fe3247 #fe3248 #fe3248 #e92812 #e02900 #fb2e3e #f01111 #fe3247 #81ce00 #81cd00 #01c000 #ebbf00 #ebbf00 #eabe00 #ebbf00 #ecbf00 #ecbf00 #ecbf00 #edbf00 #ef1211 #c8b701 #c5b701 #ebbf00 #c5be01 #86c601 #c7d2e5 #0198c0 #0251fc #7197d7 #4d689b #9e9fa2 #949dae #c75cc6 #3259c7 #7d8952 #d3ac19 #de201f #adb119 #be9c2d #577881 #a4a096 #b787ac #9275da #af1ea8 #aa973d #477f92 #65b5cb #2f5cc6 #c471c0 #80c709 #cba81f #489338 #fe8839 #8a7352 #e1b60c #5f37bb #ddb311 #305cc5 #deb410 #ad4e3b #b001af #b99b2f #7c7062 #deb40f #e7ba08 #536a95 #3f61b4 #ad9f9a #e1b60d #0aba08 #d02b29 #4766a4 #8b6651 #82953b #d07f49 #8c9840 #d92422 #e31b1b #6c7676 #bca424 #756d72 #b39635 #999eaa #2b59cd #ae9537 #dcb212 #88775c #b09f2b #dbc46b #dcb212 #dab014 #c9c6b4 #618237 #8d656b #80c60a #b80db6 #8d5675 #2889a7 #838546 #809836 #958951 #79785f #87a9b4 #b5443b #5425d7 #d7b015 #507093 #12b50d #c9a721 #f1803d #c1229a #07bc02 #b5562a #eb1613 #1494b3 #de2b02 #e6af0e #c12792 #c15f4e #b06a5a #c1229b #d69f85 #bcd0f3 #0198c0 #568bfd #629be4 #436ca1 #9ea0a1 #919eb1 #5bd05a #ec374a #f7354b #f7354b #5f66ed #5fcd5b #60afce #c98b6b #0ab707 #181dda #de2a02 #f1374b #e7a69c #5cb6cf #05bb04 #9f968b #6496d4 #0e0ceb #181cd9 #bfd7e4 #f1798a #908ffd #d3c4db #af01af #d42c0d #5e97d5 #5d8fe8 #f0798a #e3725c #c27d9a #58d05c #e7cbbe #e93650 #e87a8c #cc7d95 #be04bb #905d31 #0695bc #339a1b #4a4eb4 #c82c38 #c74050 #04bd03 #0371d4 #1451e7 #e41819 #af5022 #0950f5 #ab435d #fb344b #df2901 #2652d0 #3b4ebb #a05331 #bd05b9 #d55acd #bb1b98 #fd8738 #da2f08 #b6513e 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mgcFullMrna MGC Genes psl Mammalian Gene Collection Full ORF mRNAs 3 100 0 100 0 127 177 127 0 0 0

    Description

    \ \

    \ This track show alignments of human mRNAs from the\ Mammalian Gene Collection\ (MGC) having full-length open reading frames (ORFs) to the genome.\ The goal of the Mammalian Gene Collection is to provide researchers with\ unrestricted access to sequence-validated full-length protein-coding cDNA\ clones for human, mouse, rat, xenopus, and zerbrafish genes.\

    \ \

    Display Conventions and Configuration

    \ \

    \ The track follows the display conventions for\ gene prediction\ tracks.\

    \ \

    \ An optional codon coloring feature is available for quick\ validation and comparison of gene predictions.\ To display codon colors, select the genomic codons option from the\ Color track by codons pull-down menu. For more information\ about this feature, go to the\ \ Coloring Gene Predictions and Annotations by Codon page.\

    \ \

    Methods

    \ \

    \ GenBank human MGC mRNAs identified as having full-length ORFs\ were aligned against the genome using blat. When a single mRNA\ aligned in multiple places, the alignment having the highest base identity was\ found. Only alignments having a base identity level within 1% of\ the best and at least 95% base identity with the genomic sequence\ were kept.\

    \ \

    Credits

    \ \

    \ The human MGC full-length mRNA track was produced at UCSC from\ mRNA sequence data submitted to\ \ GenBank by the Mammalian Gene Collection project.\

    \ \

    References

    \ \

    \ Mammalian Gene Collection project\ references.\

    \ \

    \ Kent WJ.\ \ BLAT--the BLAST-like alignment tool.\ Genome Res. 2002 Apr;12(4):656-64.\ PMID: 11932250; PMC: PMC187518\

    \ genes 1 baseColorDefault diffCodons\ baseColorUseCds genbank\ baseColorUseSequence genbank\ color 0,100,0\ group genes\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Mammalian Gene Collection Full ORF mRNAs\ parent mgcOrfeomeMrna\ shortLabel MGC Genes\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ track mgcFullMrna\ type psl\ visibility pack\ mgcOrfeomeMrna MGC/ORFeome Genes MGC/ORFeome Full ORF mRNA Clones 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ These tracks show alignments of human mRNAs from the\ Mammalian Gene Collection\ (MGC) and \ ORFeome Collaboration having full-length open reading frames (ORFs) to the genome.\ The goal of the Mammalian Gene Collection is to provide researchers with\ unrestricted access to sequence-validated full-length protein-coding cDNA\ clones for human, mouse, and rat genes. The ORFeome project extended MGC to\ provide additional human, mouse, and zebrafish clones.\

    \ \

    Display Conventions and Configuration

    \ \

    \ The track follows the display conventions for\ gene prediction\ tracks.\

    \ \

    \ An optional codon coloring feature is available for quick\ validation and comparison of gene predictions.\ To display codon colors, select the genomic codons option from the\ Color track by codons pull-down menu. For more information\ about this feature, go to the\ \ Coloring Gene Predictions and Annotations by Codon page.\

    \ \

    Methods

    \ \

    \ GenBank human MGC mRNAs identified as having full-length ORFs\ were aligned against the genome using blat. When a single mRNA\ aligned in multiple places, the alignment having the highest base identity was\ found. Only alignments having a base identity level within 1% of\ the best and at least 95% base identity with the genomic sequence\ were kept.\

    \ \

    Credits

    \ \

    \ The human MGC full-length mRNA track was produced at UCSC from\ mRNA sequence data submitted to\ \ GenBank by the Mammalian Gene Collection project.\

    \ \

    \ Visit the ORFeome Collaboration\ \ members page for a list of credits and references.\

    \ \

    References

    \ \

    \ Mammalian Gene Collection project\ references.\

    \ \

    \ Kent WJ.\ \ BLAT--the BLAST-like alignment tool.\ Genome Res. 2002 Apr;12(4):656-64.\ PMID: 11932250; PMC: PMC187518\

    \ genes 0 group genes\ longLabel MGC/ORFeome Full ORF mRNA Clones\ shortLabel MGC/ORFeome Genes\ superTrack on\ track mgcOrfeomeMrna\ visibility hide\ miRnaAtlas miRNA Tissue Atlas bigBarChart Tissue-Specific microRNA Expression from Two Individuals 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The Human miRNA Tissue Atlas is a\ catalog of tissue-specific microRNA (miRNA) expression across 62 tissues. This track contains\ quantile normalized miRNA expression data sampled from two individuals and mapped to\ miRBase v21 coordinates. The track contains two subtracks, one\ for each individual sampled.

    \ \

    \ The Tissue Specificity Index (TSI) is analogous to the "tau" value for mRNA expression,\ and is calculated as described in the\ \ associated publication. Values closer to 0 indicate miRNAs expressed in many or all tissues,\ while values closer to 1 indicate miRNAs expressed only in a specific tissue or tissues. To\ browse miRNAs by TSI value, please see the\ miRNA Tissue Atlas.

    \ \

    Display Conventions and Configuration

    \

    \ This track is formatted as a barChart track,\ similar to the GTEx or the\ TCGA Cancer Expression tracks, where the\ heights of each bar indicate the expression value for the miRNA in a specific tissue. The tissues\ sampled are described in the table below:\

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    Bar ColorSample 1Sample 2
    AdipocyteAdipocyte
    ArteryArtery
    ColonColon
    Dura materDura mater
    KidneyKidney
    LiverLiver
    LungLung
    MuscleMuscle
    MyocardiumMyocardium
    SkinSkin
    SpleenSpleen
    StomachStomach
    TestisTestis
    ThyroidThyroid
    Small intestine
    Bone
    Gallbladder
    Fascia
    Bladder
    Epididymis
    Tunica albuginea
    Nervus intercostalis
    Arachnoid mater
    Brain
    Small intestine duodenum
    Small intestine jejunum
    Pancreas
    Kidney glandula suprarenalis
    Kidney cortex renalis
    Esophagus
    Prostate
    Bone marrow
    Vein
    Lymph node
    Nerve not specified
    Pleura
    Pituitary gland
    Spinal cord
    Thalamus
    Brain white matter
    Nucleus caudatus
    Kidney medulla renalis
    Brain gray_matter
    Cerebral cortex temporal
    Cerebral cortex frontal
    Cerebral cortex occipital
    Cerebellum
    \

    \ The 14 shared tissues sampled across both individuals are presented in the same order for easier comparison.\

    \ \

    Data Access

    \

    \ The underlying expression matrix and TSI values can be obtained from the\ miRNA tissue atlas website, in the\ data_matrix_quantile.txt and tsi_quantile.csv files.\

    \ \

    References

    \

    \ Ludwig N, Leidinger P, Becker K, Backes C, Fehlmann T, Pallasch C, Rheinheimer S, Meder B,\ Stähler C, Meese E et al.\ \ Distribution of miRNA expression across human tissues.\ Nucleic Acids Res. 2016 May 5;44(8):3865-77.\ PMID: 26921406; PMC: PMC4856985\

    \ expression 1 barChartLabel Tissue\ compositeTrack on\ configurable off\ group expression\ longLabel Tissue-Specific microRNA Expression from Two Individuals\ maxLimit 52000\ shortLabel miRNA Tissue Atlas\ subGroup1 view View a_A=Sample1 b_B=Sample2\ track miRnaAtlas\ type bigBarChart\ miRnaAtlasSample1 miRNA Tissue Atlas bigBarChart Tissue-Specific microRNA Expression from Two Individuals 3 100 0 0 0 127 127 127 0 0 0 expression 1 configurable on\ longLabel Tissue-Specific microRNA Expression from Two Individuals\ parent miRnaAtlas\ shortLabel miRNA Tissue Atlas\ track miRnaAtlasSample1\ type bigBarChart\ view a_A\ visibility pack\ miRnaAtlasSample2 miRNA Tissue Atlas bigBarChart Tissue-Specific microRNA Expression from Two Individuals 3 100 0 0 0 127 127 127 0 0 0 expression 1 configurable on\ longLabel Tissue-Specific microRNA Expression from Two Individuals\ parent miRnaAtlas\ shortLabel miRNA Tissue Atlas\ track miRnaAtlasSample2\ type bigBarChart\ view b_B\ visibility pack\ bismapBigWig Multi-read mappability bigWig Single-read and multi-read mappability after bisulfite conversion 2 100 0 0 0 127 127 127 0 0 0 map 0 longLabel Single-read and multi-read mappability after bisulfite conversion\ parent bismap on\ shortLabel Multi-read mappability\ track bismapBigWig\ type bigWig\ view MR\ viewLimits 0:1\ visibility full\ consHprc90way Multiple Alignment bed 4 Multiple Alignment on 90 human genome assemblies 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track shows multiple alignments of 90 human genomes generated by the Minigraph-Cactus\ pangenome pipeline, which creates pangenomes directly from whole-genome alignments. This method\ builds graphs containing all forms of genetic variation while allowing use of current mapping and\ genotyping tools.\

    \ \

    Display Conventions and Configuration

    \

    \ In full and pack display modes, conservation scores are displayed as a\ wiggle track (histogram) in which the height reflects the\ size of the score.\ The conservation wiggles can be configured in a variety of ways to\ highlight different aspects of the displayed information.\ Click the Graph configuration help link for an explanation\ of the configuration options.

    \

    \ Pairwise alignments of each species to the human genome are\ displayed below the conservation histogram as a grayscale density plot (in\ pack mode) or as a wiggle (in full mode) that indicates alignment quality.\ In dense display mode, conservation is shown in grayscale using\ darker values to indicate higher levels of overall conservation\ as scored by phastCons.

    \

    \ Checkboxes on the track configuration page allow selection of the\ species to include in the pairwise display.\ Note that excluding species from the pairwise display does not alter the\ the conservation score display.

    \

    \ To view detailed information about the alignments at a specific\ position, zoom the display in to 30,000 or fewer bases, then click on\ the alignment.

    \ \

    Gap Annotation

    \

    \ The Display chains between alignments configuration option\ enables display of gaps between alignment blocks in the pairwise alignments in\ a manner similar to the Chain track display. The following\ conventions are used:\

      \
    • Single line: No bases in the aligned species. Possibly due to a\ lineage-specific insertion between the aligned blocks in the human genome\ or a lineage-specific deletion between the aligned blocks in the aligning\ species.\
    • Double line: Aligning species has one or more unalignable bases in\ the gap region. Possibly due to excessive evolutionary distance between\ species or independent indels in the region between the aligned blocks in both\ species.\
    • Pale yellow coloring: Aligning species has Ns in the gap region.\ Reflects uncertainty in the relationship between the DNA of both species, due\ to lack of sequence in relevant portions of the aligning species.\

    \ \

    Genomic Breaks

    \

    \ Discontinuities in the genomic context (chromosome, scaffold or region) of the\ aligned DNA in the aligning species are shown as follows:\

      \
    • \ Vertical blue bar: Represents a discontinuity that persists indefinitely\ on either side, e.g. a large region of DNA on either side of the bar\ comes from a different chromosome in the aligned species due to a large scale\ rearrangement.\
    • \ Green square brackets: Enclose shorter alignments consisting of DNA from\ one genomic context in the aligned species nested inside a larger chain of\ alignments from a different genomic context. The alignment within the\ brackets may represent a short misalignment, a lineage-specific insertion of a\ transposon in the human genome that aligns to a paralogous copy somewhere\ else in the aligned species, or other similar occurrence.\

    \ \

    Base Level

    \

    \ When zoomed-in to the base-level display, the track shows the base\ composition of each alignment. The numbers and symbols on the Gaps\ line indicate the lengths of gaps in the human sequence at those\ alignment positions relative to the longest non-human sequence.\ If there is sufficient space in the display, the size of the gap is shown.\ If the space is insufficient and the gap size is a multiple of 3, a\ "*" is displayed; other gap sizes are indicated by "+".

    \ \

    Methods

    \

    \ The MAF was obtained from the HPRC v1.0 minigraph-cactus HAL file (renamed\ to replace all "." characters in sample names with "#" using\ halRenameGenomes) using cactus v2.6.4 as follows.\ 

    \
cactus-hal2maf ./js ./hprc-v1.0-mc-grch38.h\
al hprc-v1.0-mc-grch38.maf.gz --noAncestors --refGenome GRCh38\
--filterGapCausingDupes --chunkSize 100000 --batchCores 96 --batchCount 1\
0 --noAncestors --batchParallelTaf 32 --batchSystem slurm --logFile\
hprc-v1.0-mc-grch38.maf.gz.log\
\
zcat hprc-v1.0-mc-grch38.maf.gz | mafDuplicateFilter -m - -k | bgzip >\
hprc-v1.0-mc-grch38-single-copy.maf.gz
    \

    \ \

    Credits

    \

    \ Thank you to Glenn Hickey for providing the HAL file from the HPRC project.\

    \ \

    References

    \

    \ Liao WW, Asri M, Ebler J, Doerr D, Haukness M, Hickey G, Lu S, Lucas JK, Monlong J, Abel HJ et\ al.\ \ A draft human pangenome reference.\ Nature. 2023 May;617(7960):312-324.\ DOI: 10.1038/s41586-023-05896-x; PMID: 37165242; PMC: PMC10172123\

    \ \

    \ Hickey G, Monlong J, Ebler J, Novak AM, Eizenga JM, Gao Y, Human Pangenome Reference Consortium,\ Marschall T, Li H, Paten B.\ \ Pangenome graph construction from genome alignments with Minigraph-Cactus.\ Nat Biotechnol. 2023 May 10;.\ DOI: 10.1038/s41587-023-01793-w; PMID: 37165083; PMC: PMC10638906\

    \ \

    \ Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q, Xie D, Feng S, Stiller J\ et al.\ \ Progressive Cactus is a multiple-genome aligner for the thousand-genome era.\ Nature. 2020 Nov;587(7833):246-251.\ DOI: 10.1038/s41586-020-2871-y; PMID: 33177663; PMC: PMC7673649\

    \ \

    \ Paten B, Earl D, Nguyen N, Diekhans M, Zerbino D, Haussler D.\ \ Cactus: Algorithms for genome multiple sequence alignment.\ Genome Res. 2011 Sep;21(9):1512-28.\ DOI: 10.1101/gr.123356.111;\ PMID: 21665927; PMC: PMC3166836\

    \ hprc 1 compositeTrack on\ dragAndDrop subTracks\ group hprc\ html hprc90way\ longLabel Multiple Alignment on 90 human genome assemblies\ shortLabel Multiple Alignment\ subGroup1 view Views align=Multiz_Alignment\ track consHprc90way\ type bed 4\ visibility hide\ cons447wayViewalign Multiz 447-way bed 4 Cactus Alignment & Conservation on 447 mammal species, including Zoonomia genomes 3 100 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Cactus Alignment & Conservation on 447 mammal species, including Zoonomia genomes\ parent cons447way\ shortLabel Multiz 447-way\ track cons447wayViewalign\ view align\ viewUi on\ visibility pack\ cons470way Multiz 470-way bed 4 Multiz Alignment & Conservation (470 mammals) 0 100 0 0 0 127 127 127 0 0 0

    Data Access

    \

    \ Downloads for data in this track are available:\

    \ \

    Description

    \ \

    \ This track shows multiple alignments of 470 mammal\ assemblies and measurements of evolutionary conservation\ from the Michael Hiller Lab. There is some duplication of different assemblies for the\ same species, hence there are 431 distinct species in this collection.\

    \ \

    \ The multiple alignments were generated using multiz and\ other tools in the UCSC/Penn State Bioinformatics\ comparative genomics alignment pipeline.\ Conserved elements identified by phastCons are also displayed in\ this track.\

    \ \

    \ The base-wise conservation scores are computed using two methods\ phastCons and phyloP from the\ PHAST package,\ for all species.\

    \ \

    \ PhastCons (which has been used in previous Conservation tracks) is a hidden\ Markov model-based method that estimates the probability that each\ nucleotide belongs to a conserved element, based on the multiple alignment.\ It considers not just each individual alignment column, but also its\ flanking columns. By contrast, phyloP separately measures conservation at\ individual columns, ignoring the effects of their neighbors. As a\ consequence, the phyloP plots have a less smooth appearance than the\ phastCons plots, with more "texture" at individual sites. The two methods\ have different strengths and weaknesses. PhastCons is sensitive to "runs"\ of conserved sites, and is therefore effective for picking out conserved\ elements. PhyloP, on the other hand, is more appropriate for evaluating\ signatures of selection at particular nucleotides or classes of nucleotides\ (e.g., third codon positions, or first positions of miRNA target sites).\

    \ \

    \ The genome assemblies are from a variety of sources. Some are equivalent\ to UCSC genome browser assemblies, some are from NCBI Genbank assemblies,\ and some are from the DNA Zoo.\ When available in the UCSC browser system, links are provided in the table\ below. Otherwise, links are provided to source locations for the assemblies.\

    \

    \

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    countcommon
    name    		cladescientific
    name    		assembly
    link to browser when available, or assembly source    		taxon id
    link to NCBI
    1humanprimatesHomo sapiensDec. 2013 (GRCh38/hg38)9606
    2chimpanzeePrimatesPan troglodytesJan. 2018 (Clint_PTRv2/panTro6)9598
    3pygmy chimpanzeePrimatesPan paniscusMay 2020 (Mhudiblu_PPA_v0/panPan3)9597
    4western lowland gorillaPrimatesGorilla gorilla gorillaAug. 2019 (Kamilah_GGO_v0/gorGor6)9595
    5Sumatran orangutanPrimatesPongo abeliiJan. 2018 (Susie_PABv2/ponAbe3)9601
    6northern white-cheeked gibbonPrimatesNomascus leucogenysHLnomLeu4 GCA_006542625.161853
    7silvery gibbonPrimatesHylobates molochHLhylMol2 GCA_009828535.281572
    8pig-tailed macaquePrimatesMacaca nemestrinaMar. 2015 (Mnem_1.0/macNem1)9545
    9geladaPrimatesTheropithecus geladaHLtheGel1 GCA_003255815.19565
    10crab-eating macaquePrimatesMacaca fascicularisHLmacFas6 GCA_012559485.19541
    11Mona monkeyPrimatesCercopithecus monaHLcerMon1 GCA_014849445.136226
    12Ugandan red ColobusPrimatesPiliocolobus tephroscelesHLpilTep2 GCA_002776525.3591936
    13Angolan colobusPrimatesColobus angolensis palliatusMar. 2015 (Cang.pa_1.0/colAng1)336983
    14drillPrimatesMandrillus leucophaeusMar. 2015 (Mleu.le_1.0/manLeu1)9568
    15sooty mangabeyPrimatesCercocebus atysMar. 2015 (Caty_1.0/cerAty1)9531
    16olive baboonPrimatesPapio anubisHLpapAnu5 GCA_008728515.19555
    17mandrillPrimatesMandrillus sphinxHLmanSph1 GCA_004802615.19561
    18Hanuman langurPrimatesSemnopithecus entellusHLsemEnt1 GCA_004025065.1_SemEnt_v1_BIUU88029
    19Rhesus monkeyPrimatesMacaca mulattaFeb. 2019 (Mmul_10/rheMac10)9544
    20Japanese macaquePrimatesMacaca fuscataDNA zoo Macaca fuscata9542
    21Francois's langurPrimatesTrachypithecus francoisiHLtraFra1 GCA_009764315.154180
    22black snub-nosed monkeyPrimatesRhinopithecus bietiAug. 2016 (ASM169854v1/rhiBie1)61621
    23golden snub-nosed monkeyPrimatesRhinopithecus roxellanaHLrhiRox2 GCA_007565055.161622
    24Red shanked douc langurPrimatesPygathrix nemaeusHLpygNem1 GCA_004024825.1_PygNem_v1_BIUU54133
    25De Brazza's monkeyPrimatesCercopithecus neglectusHLcerNeg1 GCA_004027615.1_CertNeg_v1_BIUU36227
    26proboscis monkeyPrimatesNasalis larvatusNov. 2014 (Charlie1.0/nasLar1)43780
    27Allen's swamp monkeyPrimatesAllenopithecus nigroviridisDNA zoo Allenopithecus nigroviridis54135
    28green monkeyPrimatesChlorocebus sabaeusMar. 2014 (Chlorocebus_sabeus 1.1/chlSab2)60711
    29red guenonPrimatesErythrocebus patasHLeryPat1 GCA_004027335.1_EryPat_v1_BIUU9538
    30white-faced sakiPrimatesPithecia pitheciaHLpitPit1 GCA_004026645.1_PitPit_v1_BIUU43777
    31black-handed spider monkeyPrimatesAteles geoffroyiHLateGeo1 GCA_004024785.1_AteGeo_v1_BIUU9509
    32Ma's night monkeyPrimatesAotus nancymaaeJun. 2017 (Anan_2.0/aotNan1)37293
    33Bolivian titiPrimatesPlecturocebus donacophilusHLpleDon1 GCA_004027715.1_CalDon_v1_BIUU230833
    34mantled howler monkeyPrimatesAlouatta palliataHLaloPal1 GCA_004027835.1_AloPal_v1_BIUU30589
    35Bolivian squirrel monkeyPrimatesSaimiri boliviensisDNA zoo Saimiri boliviensis27679
    36tamarinPrimatesSaguinus imperatorHLsagImp1 GCA_004024885.1_SagImp_v1_BIUU9491
    37Bolivian squirrel monkeyPrimatesSaimiri boliviensis boliviensisOct. 2011 (Broad/saiBol1)39432
    38white-tufted-ear marmosetPrimatesCallithrix jacchusHLcalJac4 GCA_011100555.1_mCalJac1.pat.X9483
    39pygmy marmosetPrimatesCallithrix pygmaeaDNA zoo Callithrix pygmaea9493
    40tufted capuchinPrimatesSapajus apellaHLsapApe1 GCA_009761245.19515
    41Panamanian white-faced capuchinPrimatesCebus capucinus imitatorApr. 2016 (Cebus_imitator-1.0/cebCap1)2715852
    42white-fronted capuchinPrimatesCebus albifronsHLcebAlb1 GCA_004027755.1_CebAlb_v1_BIUU9514
    43aye-ayePrimatesDaubentonia madagascariensisHLdauMad1 GCA_004027145.1_DauMad_v1_BIUU31869
    44Coquerel's sifakaPrimatesPropithecus coquereliMar. 2015 (Pcoq_1.0/proCoq1)379532
    45babakotoPrimatesIndri indriHLindInd1 GCA_004363605.1_IndInd_v1_BIUU34827
    46brown lemurPrimatesEulemur fulvusHLeulFul1 GCA_004027275.1_EulFul_v1_BIUU13515
    47Sclater's lemurPrimatesEulemur flavifronsAug. 2015 (Eflavifronsk33QCA/eulFla1)87288
    48Ring-tailed lemurPrimatesLemur cattaHLlemCat1 GCA_004024665.1_LemCat_v1_BIUU9447
    49greater bamboo lemurPrimatesProlemur simusHLproSim1 GCA_003258685.11328070
    50mongoose lemurPrimatesEulemur mongozDNA zoo Eulemur mongoz34828
    51Sclater's lemurPrimatesEulemur flavifronsDNA zoo Eulemur flavifrons87288
    52Lesser dwarf lemurPrimatesCheirogaleus mediusHLcheMed1 GCA_008086735.19460
    53black lemurPrimatesEulemur macacoAug. 2015 (Emacaco_refEf_BWA_oneround/eulMac1)30602
    54Philippine tarsierPrimatesCarlito syrichtaSep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2)1868482
    55gray mouse lemurPrimatesMicrocebus murinusFeb. 2017 (Mmur_3.0/micMur3)30608
    56Northern giant mouse lemurPrimatesMirza zazaHLmirZaz1 GCA_008750895.1339999
    57Coquerel's mouse lemurPrimatesMirza coquereliHLmirCoq1 GCA_004024645.1_MizCoq_v1_BIUU47180
    58mouse lemurPrimatesMicrocebus sp. 3 GT-2019HLmicSpe31 GCA_008750915.12508170
    59Northern rufous mouse lemurPrimatesMicrocebus tavaratraHLmicTav1 GCA_008750935.1143351
    60slow lorisPrimatesNycticebus coucangHLnycCou1 GCA_004027815.1_NycCou_v1_BIUU9470
    61small-eared galagoPrimatesOtolemur garnettiiMar. 2011 (Broad/otoGar3)30611
    62Sunda flying lemurEuarchontogliresGaleopterus variegatusHLgalVar2 GCA_004027255.2482537
    63Chinese tree shrewEuarchontogliresTupaia chinensisJan 2013 (TupChi_1.0/tupChi1)246437
    64northern tree shrewEuarchontogliresTupaia belangeriDec. 2006 (Broad/tupBel1)37347
    65pumaCarnivoraPuma concolorHLpumCon1 GCA_003327715.1_PumCon1.09696
    66Amur tigerCarnivoraPanthera tigris altaica06 Sep 2013 (PanTig1.0/panTig1)74533
    67Clouded leopardCarnivoraNeofelis nebulosaDNA zoo Neofelis nebulosa61452
    68leopardCarnivoraPanthera pardusHLpanPar1 GCA_001857705.1_PanPar1.09691
    69bearded sealCarnivoraErignathus barbatusDNA zoo Erignathus barbatus39304
    70jaguarCarnivoraPanthera oncaHLpanOnc1 GCA_004023805.1_PanOnc_v1_BIUU9690
    71harbor sealCarnivoraPhoca vitulinaHLphoVit1 GCA_004348235.19720
    72cheetahCarnivoraAcinonyx jubatusHLaciJub2 GCF_003709585.1_Aci_jub_232536
    73gray sealCarnivoraHalichoerus grypusHLhalGry1 GCA_012393455.19711
    74Hawaiian monk sealCarnivoraNeomonachus schauinslandiJun. 2017 (ASM220157v1/neoSch1)29088
    75Weddell sealCarnivoraLeptonychotes weddelliiMar 2013 (LepWed1.0/lepWed1)9713
    76jaguarCarnivoraPanthera oncaDNA zoo Panthera onca9690
    77Amur leopard catCarnivoraPrionailurus bengalensis euptilurusHLpriBen1 GCA_005406085.1300877
    78Asian black bearCarnivoraUrsus thibetanus thibetanusHLursThi1 GCA_009660055.1441215
    79Spanish lynxCarnivoraLynx pardinusHLlynPar1 GCA_900661375.1191816
    80Southern elephant sealCarnivoraMirounga leoninaHLmirLeo1 GCA_011800145.19715
    81Canada lynxCarnivoraLynx canadensisHLlynCan1 GCA_007474595.161383
    82Northern elephant sealCarnivoraMirounga angustirostrisDNA zoo Mirounga angustirostris9716
    83lionCarnivoraPanthera leoHLpanLeo1 GCA_008795835.19689
    84walrusCarnivoraOdobenus rosmarusDNA zoo Odobenus rosmarus9707
    85northern fur sealCarnivoraCallorhinus ursinusHLcalUrs1 GCA_003265705.134884
    86Pacific walrusCarnivoraOdobenus rosmarus divergensJan 2013 (Oros_1.0/odoRosDiv1)9708
    87giant pandaCarnivoraAiluropoda melanoleucaHLailMel2 GCA_002007445.29646
    88California sea lionCarnivoraZalophus californianusHLzalCal1 GCA_009762305.1_mZalCal1.pri9704
    89Steller sea lionCarnivoraEumetopias jubatusHLeumJub1 GCA_004028035.134886
    90domestic catCarnivoraFelis catusNov. 2017 (Felis_catus_9.0/felCat9)9685
    91jaguarundiCarnivoraPuma yagouaroundiHLpumYag1 GCA_014898765.11608482
    92grizzly bearCarnivoraUrsus arctos horribilisHLursArc1 GCA_003584765.1116960
    93polar bearCarnivoraUrsus maritimus09 May-2014 (UrsMar_1.0/ursMar1)29073
    94antarctic fur sealCarnivoraArctocephalus gazellaHLarcGaz2 GCA_900642305.137190
    95American black bearCarnivoraUrsus americanusHLursAme1 GCA_003344425.19643
    96American black bearCarnivoraUrsus americanusDNA zoo Ursus americanus9643
    97black-footed catCarnivoraFelis nigripesHLfelNig1 GCA_004023925.1_FelNig_v1_BIUU61379
    98fossaCarnivoraCryptoprocta feroxDNA zoo Cryptoprocta ferox94188
    99red foxCarnivoraVulpes vulpesHLvulVul1 GCA_003160815.19627
    100dogCarnivoraCanis lupus familiarisMar. 2020 (UU_Cfam_GSD_1.0/canFam4)9615
    101Arctic foxCarnivoraVulpes lagopusHLvulLag1 GCA_004023825.1_VulLag_v1_BIUU494514
    102African hunting dogCarnivoraLycaon pictusDNA zoo Lycaon pictus9622
    103dingoCarnivoraCanis lupus dingoHLcanLupDin1 GCA_003254725.1286419
    104dogCarnivoraCanis lupus familiarisMay 2019 (UMICH_Zoey_3.1/canFam5)9615
    105kinkajouCarnivoraPotos flavusDNA zoo Potos flavus29067
    106African hunting dogCarnivoraLycaon pictusHLlycPic2 GCA_004216515.19622
    107lesser pandaCarnivoraAilurus fulgensDNA zoo Ailurus fulgens9649
    108spotted hyenaCarnivoraCrocuta crocutaHLcroCro1 GCA_008692635.19678
    109striped hyenaCarnivoraHyaena hyaenaHLhyaHya1 GCA_003009895.195912
    110Asian palm civetCarnivoraParadoxurus hermaphroditusHLparHer1 GCA_004024585.1_ParHer_v1_BIUU71117
    111White-nosed coatiCarnivoraNasua naricaDNA zoo Nasua narica352831
    112sableCarnivoraMartes zibellinaHLmarZib1 GCA_012583365.136722
    113wolverineCarnivoraGulo guloHLgulGul1 GCA_900006375.248420
    114raccoonCarnivoraProcyon lotorDNA zoo Procyon lotor9654
    115CacomistleCarnivoraBassariscus sumichrastiDNA zoo Bassariscus sumichrasti392507
    116western spotted skunkCarnivoraSpilogale gracilisHLspiGra1 GCA_004023965.1_SpiGra_v1_BIUU30551
    117North American badgerCarnivoraTaxidea taxus jeffersoniiHLtaxTax1 GCA_003697995.12282171
    118ratelCarnivoraMellivora capensisHLmelCap1 GCA_004024625.1_MelCap_v1_BIUU9664
    119meerkatCarnivoraSuricata suricattaHLsurSur2 GCA_004023905.1_SurSur_v1_BIUU37032
    120meerkatCarnivoraSuricata suricattaHLsurSur1 GCA_006229205.137032
    121banded mongooseCarnivoraMungos mungoHLmunMug1 GCA_004023785.1_MunMun_v1_BIUU210652
    122dwarf mongooseCarnivoraHelogale parvulaHLhelPar1 GCA_004023845.1_HelPar_v1_BIUU210647
    123Northern American river otterCarnivoraLontra canadensisHLlonCan1 GCA_010015895.176717
    124giant otterCarnivoraPteronura brasiliensisDNA zoo Pteronura brasiliensis9672
    125giant otterCarnivoraPteronura brasiliensisHLpteBra1 GCA_004024605.1_PteBra_v1_BIUU9672
    126Southern sea otterCarnivoraEnhydra lutris nereisJun. 2019 (ASM641071v1/enhLutNer1)1049777
    127Northern sea otterCarnivoraEnhydra lutris kenyoniSep. 2017 (ASM228890v2/enhLutKen1)391180
    128Eurasian river otterCarnivoraLutra lutraHLlutLut1 GCA_902655055.19657
    129ermineCarnivoraMustela ermineaHLmusErm1 GCA_009829155.136723
    130American minkCarnivoraNeovison visonHLneoVis1 GCA_900108605.1_NNQGG.v01452646
    131European polecatCarnivoraMustela putoriusHLmusPut1 GCA_902460205.19668
    132domestic ferretCarnivoraMustela putorius furoHLmusFur2 GCA_011764305.19669
    133Brazilian tapirLaurasiatheriaTapirus terrestrisHLtapTer1 GCA_004025025.1_TapTer_v1_BIUU9801
    134greater Indian rhinocerosLaurasiatheriaRhinoceros unicornisDNA zoo Rhinoceros unicornis9809
    135Asiatic tapirLaurasiatheriaTapirus indicusHLtapInd1 GCA_004024905.1_TapInd_v1_BIUU9802
    136Asiatic tapirLaurasiatheriaTapirus indicusDNA zoo Tapirus indicus9802
    137black rhinocerosLaurasiatheriaDiceros bicornisHLdicBic1 GCA_004027315.29805
    138Sumatran rhinocerosLaurasiatheriaDicerorhinus sumatrensis sumatrensisHLdicSum1 GCA_002844835.1_ASM284483v1310712
    139northern white rhinocerosLaurasiatheriaCeratotherium simum cottoniHLcerSimCot1 GCA_004027795.1_CerCot_v1_BIUU310713
    140southern white rhinocerosLaurasiatheriaCeratotherium simum simumMay 2012 (CerSimSim1.0/cerSim1)73337
    141Equus burchelli boehmiLaurasiatheriaEquus burchellii boehmiDNA zoo Equus burchellii boehmi89250
    142horseLaurasiatheriaEquus caballusJan. 2018 (EquCab3.0/equCab3)9796
    143Przewalski's horseLaurasiatheriaEquus przewalskiiJun 2014 (Burgud/equPrz1)9798
    144assLaurasiatheriaEquus asinusHLequAsi1 GCA_001305755.1_ASM130575v19793
    145donkeyLaurasiatheriaEquus asinus asinusHLequAsiAsi2 GCA_003033725.183772
    146Tree pangolinLaurasiatheriaManis tricuspisHLmanTri1 GCA_004765945.1358128
    147Tree pangolinLaurasiatheriaManis tricuspisDNA zoo Manis tricuspis358128
    148Chinese pangolinLaurasiatheriaManis pentadactylaHLmanPen2 GCA_014570555.1143292
    149Chinese pangolinLaurasiatheriaManis pentadactylaAug 2014 (M_pentadactyla-1.1.1/manPen1)143292
    150Malayan pangolinLaurasiatheriaManis javanicaHLmanJav1 GCA_001685135.1_ManJav1.09974
    151Malayan pangolinLaurasiatheriaManis javanicaHLmanJav2 GCA_014570535.19974
    152Hispaniolan solenodonLaurasiatheriaSolenodon paradoxusHLsolPar1 GCA_004363575.1_SolPar_v1_BIUU79805
    153eastern moleLaurasiatheriaScalopus aquaticusHLscaAqu1 GCA_004024925.1_ScaAqu_v1_BIUU71119
    154Iberian moleLaurasiatheriaTalpa occidentalisHLtalOcc1 GCA_014898055.150954
    155gracile shrew moleLaurasiatheriaUropsilus gracilisHLuroGra1 GCA_004024945.1_UroGra_v1_BIUU182669
    156star-nosed moleLaurasiatheriaCondylura cristataMar 2012 (ConCri1.0/conCri1)143302
    157western European hedgehogLaurasiatheriaErinaceus europaeusMay 2012 (EriEur2.0/eriEur2)9365
    158European shrewLaurasiatheriaSorex araneusAug. 2008 (Broad/sorAra2)42254
    159Antarctic minke whaleCetartiodactylaBalaenoptera bonaerensisHLbalBon1 GCA_000978805.1_ASM97880v133556
    160grey whaleCetartiodactylaEschrichtius robustusHLescRob1 GCA_004363415.1_EscRob_v1_BIUU9764
    161sperm whaleCetartiodactylaPhyseter catodonSep. 2013 (Physeter_macrocephalus-2.0.2/phyCat1)9755
    162sperm whaleCetartiodactylaPhyseter catodonHLphyCat2 GCA_002837175.29755
    163Yangtze River dolphinCetartiodactylaLipotes vexillifer31 Jul 2013 (Lipotes_vexillifer_v1/lipVex1)118797
    164beluga whaleCetartiodactylaDelphinapterus leucasHLdelLeu2 GCA_002288925.39749
    165hippopotamusCetartiodactylaHippopotamus amphibiusHLhipAmp3 GCA_004027065.29833
    166hippopotamusCetartiodactylaHippopotamus amphibiusHLhipAmp1 GCA_002995585.1_ASM299558v19833
    167harbor porpoiseCetartiodactylaPhocoena phocoenaDNA zoo Phocoena phocoena9742
    168harbor porpoiseCetartiodactylaPhocoena phocoenaHLphoPho1 GCA_004363495.1_PhoPho_v1_BIUU9742
    169Wild Bactrian camelCetartiodactylaCamelus ferusHLcamFer3 GCA_009834535.1419612
    170killer whaleCetartiodactylaOrcinus orcaJan. 2013 (Oorc_1.1/orcOrc1)9733
    171Bactrian camelCetartiodactylaCamelus bactrianusHLcamBac1 GCA_000767855.1_Ca_bactrianus_MBC_1.09837
    172Indo-pacific humpbacked dolphinCetartiodactylaSousa chinensisHLsouChi1 GCA_007760645.1103600
    173Arabian camelCetartiodactylaCamelus dromedariusHLcamDro2 GCA_000803125.39838
    174alpacaCetartiodactylaVicugna pacosMar. 2013 (Vicugna_pacos-2.0.1/vicPac2)30538
    175common bottlenose dolphinCetartiodactylaTursiops truncatusHLturTru4 GCA_011762595.1_mTurTru1.mat.Y9739
    176Indo-pacific bottlenose dolphinCetartiodactylaTursiops aduncusHLturAdu1 GCA_003227395.179784
    177Indo-pacific bottlenose dolphinCetartiodactylaTursiops aduncusDNA zoo Tursiops aduncus79784
    178common bottlenose dolphinCetartiodactylaTursiops truncatusOct. 2011 (Baylor Ttru_1.4/turTru2)9739
    179common bottlenose dolphinCetartiodactylaTursiops truncatusHLturTru3 GCA_001922835.1_NIST_Tur_tru_v19739
    180pigCetartiodactylaSus scrofaFeb. 2017 (Sscrofa11.1/susScr11)9823
    181okapiCetartiodactylaOkapia johnstoniDNA zoo Okapia johnstoni86973
    182Masai giraffeCetartiodactylaGiraffa tippelskirchiHLgirTip1 GCA_001651235.1_ASM165123v1439328
    183water buffaloCetartiodactylaBubalus bubalisHLbubBub2 GCA_003121395.189462
    184zebu cattleCetartiodactylaBos indicusHLbosInd2 GCA_002933975.19915
    185cowCetartiodactylaBos taurusApr. 2018 (ARS-UCD1.2/bosTau9)9913
    186wild yakCetartiodactylaBos mutusHLbosMut2 GCA_007646595.372004
    187greater kuduCetartiodactylaTragelaphus strepsicerosHLtraStr1 GCA_006410795.19946
    188aoudadCetartiodactylaAmmotragus lerviaHLammLer1 GCA_002201775.1_ALER1.09899
    189goatCetartiodactylaCapra hircusHLcapHir2 GCA_001704415.1_ARS19925
    190wild goatCetartiodactylaCapra aegagrusHLcapAeg1 GCA_000765075.19923
    191chiruCetartiodactylaPantholops hodgsoniiMay 2013 (PHO1.0/panHod1)59538
    192white-tailed deerCetartiodactylaOdocoileus virginianusHLodoVir3 GCA_014726795.19874
    193bighorn sheepCetartiodactylaOvis canadensisHLoviCan2 GCA_004026945.1_OviCan_v1_BIUU37174
    194white-tailed deerCetartiodactylaOdocoileus virginianusDNA zoo Odocoileus virginianus9874
    195sheepCetartiodactylaOvis ariesHLoviAri5 GCA_011170295.19940
    196Pere David's deerCetartiodactylaElaphurus davidianusHLelaDav1 GCA_002443075.1_Milu1.043332
    197argaliCetartiodactylaOvis ammonHLoviAmm1 GCA_003121645.130527
    198North Atlantic right whaleArtiodactylaEubalaena glacialisDNA zoo Eubalaena glacialis27606
    199North Pacific right whaleArtiodactylaEubalaena japonicaHLeubJap1 GCA_004363455.1_EubJap_v1_BIUU302098
    200minke whaleArtiodactylaBalaenoptera acutorostrata scammoniOct. 2013 (BalAcu1.0/balAcu1)310752
    201humpback whaleArtiodactylaMegaptera novaeangliaeHLmegNov1 GCA_004329385.19773
    202Fin whaleArtiodactylaBalaenoptera physalusHLbalPhy1 GCA_008795845.19770
    203bowhead whaleArtiodactylaBalaena mysticetusHLbalMys127602
    204Blue whaleArtiodactylaBalaenoptera musculusHLbalMus1 GCA_009873245.19771
    205pygmy Bryde's whaleArtiodactylaBalaenoptera edeniDNA zoo Balaenoptera edeni9769
    206Sowerby's beaked whaleArtiodactylaMesoplodon bidensHLmesBid1 GCA_004027085.1_MesBid_v1_BIUU48745
    207Indus River dolphinArtiodactylaPlatanista minorHLplaMin1 GCA_004363435.1_PlaMin_v1_BIUU48752
    208Cuvier's beaked whaleArtiodactylaZiphius cavirostrisHLzipCav1 GCA_004364475.1_ZipCav_v1_BIUU9760
    209boutuArtiodactylaInia geoffrensisHLlniGeo1 GCA_004363515.1_IniGeo_v1_BIUU9725
    210narwhalArtiodactylaMonodon monocerosHLmonMon1 GCA_005190385.240151
    211Yangtze finless porpoiseArtiodactylaNeophocaena asiaeorientalis asiaeorientalisHLneoAsi1 GCA_003031525.1_Neophocaena_asiaeorientalis_V11706337
    212pygmy sperm whaleArtiodactylaKogia brevicepsHLkogBre1 GCA_004363705.1_KogBre_v1_BIUU27615
    213vaquitaArtiodactylaPhocoena sinusHLphoSin1 GCA_008692025.142100
    214franciscanaArtiodactylaPontoporia blainvilleiHLponBla1 GCA_011754075.148723
    215Lama pacos huacayaArtiodactylaVicugna pacos huacayaHLvicPacHua3 GCA_000767525.1_Vi_pacos_V1.0273913
    216llamaArtiodactylaLama glamaDNA zoo Lama glama9844
    217melon-headed whaleArtiodactylaPeponocephala electraDNA zoo Peponocephala electra103596
    218long-finned pilot whaleArtiodactylaGlobicephala melasHLgloMel1 GCA_006547405.19731
    219Pacific white-sided dolphinArtiodactylaLagenorhynchus obliquidensHLlagObl1 GCA_003676395.190247
    220Vicugna mensalisArtiodactylaVicugna vicugna mensalisHLvicVicMen1 GCA_013265495.1273917
    221guanacoArtiodactylaLama guanicoe cacsilensisHLlamGuaCac1 GCA_013239625.1273908
    222llamaArtiodactylaLama glama chakuHLlamGlaCha1 GCA_013239585.1273914
    223Chacoan peccaryArtiodactylaCatagonus wagneriHLcatWag1 GCA_004024745.2_CatWag_v2_BIUU_UCD51154
    224giraffeArtiodactylaGiraffa camelopardalisHLgirCam1 GCA_006408565.19894
    225giraffeArtiodactylaGiraffa camelopardalisDNA zoo Giraffa camelopardalis9894
    226African buffaloArtiodactylaSyncerus cafferHLsynCaf1 GCA_902500845.19970
    227Bos bison bisonArtiodactylaBison bison bisonOct. 2014 (Bison_UMD1.0/bisBis1)43346
    228Chinese forest musk deerArtiodactylaMoschus berezovskiiHLmosBer1 GCA_006459085.168408
    229Siberian musk deerArtiodactylaMoschus moschiferusHLmosMos1 GCA_004024705.268415
    230alpine musk deerArtiodactylaMoschus chrysogasterHLmosChr1 GCA_006461725.168412
    231Yarkand deerArtiodactylaCervus hanglu yarkandensisHLcerHanYar1 GCA_010411085.184702
    232gaurArtiodactylaBos gaurusHLbosGau1 GCA_014182915.19904
    233gayalArtiodactylaBos frontalisHLbosFro1 GCA_007844835.1_NRC_Mithun_130520
    234white-lipped deerArtiodactylaPrzewalskium albirostrisHLprzAlb1 GCA_006408465.11088058
    235roan antelopeArtiodactylaHippotragus equinusHLhipEqu1 GCA_016433095.137186
    236Harvey's duikerArtiodactylaCephalophus harveyiHLcepHar1 GCA_006410635.1129224
    237sable antelopeArtiodactylaHippotragus niger nigerHLhipNig1 GCA_006942125.182127
    238domestic yakArtiodactylaBos grunniensHLbosGru1 GCA_005887515.230521
    239scimitar-horned oryxArtiodactylaOryx dammahDNA zoo Oryx dammah59534
    240bush duikerArtiodactylaSylvicapra grimmiaHLsylGri1 GCA_006408735.1119562
    241Maxwell's duikerArtiodactylaPhilantomba maxwelliiHLphiMax1 GCA_006410695.1907741
    242gemsbokArtiodactylaOryx gazellaHLoryGaz1 GCA_003945745.19958
    243pronghornArtiodactylaAntilocapra americanaHLantAme1 GCA_007570785.19891
    244Reeves' muntjacArtiodactylaMuntiacus reevesiHLmunRee1 GCA_008787405.19886
    245black muntjacArtiodactylaMuntiacus crinifronsHLmunCri1 GCA_006408485.171854
    246Central European red deerArtiodactylaCervus elaphus hippelaphusHLcerEla1 GCA_002197005.146360
    247lesser kuduArtiodactylaTragelaphus imberbisHLtraImb1 GCA_006410775.19947
    248brindled gnuArtiodactylaConnochaetes taurinusDNA zoo Connochaetes taurinus9927
    249bushbuckArtiodactylaTragelaphus scriptusHLtraScr1 GCA_006410495.166440
    250waterbuckArtiodactylaKobus ellipsiprymnusHLkobEll1 GCA_006410655.19962
    251muntjakArtiodactylaMuntiacus muntjakHLmunMun1 GCA_008782695.19888
    252topiArtiodactylaDamaliscus lunatusHLdamLun1 GCA_006408505.19929
    253bighorn sheepArtiodactylaOvis canadensis canadensisHLoviCan1 GCA_001039535.1112262
    254lechweArtiodactylaKobus leche lecheHLkobLecLec1 GCA_014926565.191880
    255Eastern roe deerArtiodactylaCapreolus pygargusHLcapPyg1 GCA_012922965.148560
    256Eurasian elkArtiodactylaAlces alcesHLalcAlc1 GCA_007570765.19852
    257Cobus hunteriArtiodactylaBeatragus hunteriHLbeaHun1 GCA_004027495.1_BeaHun_v1_BIUU59527
    258impalaArtiodactylaAepyceros melampusHLaepMel1 GCA_006408695.19897
    259mule deerArtiodactylaOdocoileus hemionus hemionusHLodoHem1 GCA_004115125.19877
    260Bohar reedbuckArtiodactylaRedunca reduncaHLredRed1 GCA_006410935.159556
    261Siberian ibexArtiodactylaCapra sibiricaHLcapSib1 GCA_003182615.272544
    262porcupine caribouArtiodactylaRangifer tarandus grantiHLranTarGra2 GCA_014898785.1191431
    263reindeerArtiodactylaRangifer tarandusHLranTar1 GCA_004026565.1_RanTarSib_v1_BIUU9870
    264klipspringerArtiodactylaOreotragus oreotragusHLoreOre1 GCA_006410675.166444
    265Chinese water deerArtiodactylaHydropotes inermisHLhydIne1 GCA_006459105.19883
    266snow sheepArtiodactylaOvis nivicola lydekkeriHLoviNivLyd1 GCA_903231385.11867112
    267suniArtiodactylaNeotragus moschatusHLneoMos1 GCA_006410615.166442
    268white-tailed deerArtiodactylaOdocoileus virginianus texanusHLodoVir1 GCA_002102435.1_Ovir.te_1.09880
    269Nilgiri tahrArtiodactylaHemitragus hylocriusHLhemHyl1 GCA_004026825.1_HemHyl_v1_BIUU330464
    270Asiatic mouflonArtiodactylaOvis orientalisHLoviOri1 GCA_014523465.1469796
    271royal antelopeArtiodactylaNeotragus pygmaeusHLneoPyg1 GCA_006410875.11027985
    272Grant's gazelleArtiodactylaNanger grantiHLnanGra1 GCA_006408635.127591
    273Przewalski's gazelleArtiodactylaProcapra przewalskiiHLproPrz1 GCA_006410515.1157668
    274steenbokArtiodactylaRaphicerus campestrisHLrapCam1 GCA_006410735.159544
    275Thomson's gazelleArtiodactylaEudorcas thomsoniiHLeudTho1 GCA_006408755.169308
    276springbokArtiodactylaAntidorcas marsupialisHLantMar1 GCA_006408585.159523
    277gerenukArtiodactylaLitocranius walleriHLlitWal1 GCA_006410535.169311
    278Kirk's dik-dikArtiodactylaMadoqua kirkiiHLmadKir1 GCA_006408675.166434
    279Hog deerArtiodactylaAxis porcinusHLaxiPor1 GCA_003798545.157737
    280Java mouse-deerArtiodactylaTragulus javanicusHLtraJav1 GCA_004024965.29849
    281lesser mouse-deerArtiodactylaTragulus kanchilHLtraKan1 GCA_006408655.11088131
    282mountain goatArtiodactylaOreamnos americanusHLoreAme1 GCA_009758055.134873
    283saiga antelopeArtiodactylaSaiga tataricaHLsaiTat1 GCA_004024985.1_SaiTat_v1_BIUU34875
    284Alpine ibexArtiodactylaCapra ibexHLcapIbe1 GCA_006410555.172542
    285Hoffmann's two-fingered slothXenarthraCholoepus hoffmanniDNA zoo Choloepus hoffmanni9358
    286southern two-toed slothXenarthraCholoepus didactylusHLchoDid2 GCF_015220235.1_mChoDid1.pri27675
    287southern two-toed slothXenarthraCholoepus didactylusHLchoDid1 GCA_004027855.1_ChoDid_v1_BIUU27675
    288nine-banded armadilloXenarthraDasypus novemcinctusDec. 2011 (Baylor/dasNov3)9361
    289giant anteaterXenarthraMyrmecophaga tridactylaHLmyrTri1 GCA_004026745.1_MyrTri_v1_BIUU71006
    290southern tamanduaXenarthraTamandua tetradactylaHLtamTet1 GCA_004025105.1_TamTet_v1_BIUU48850
    291Southern three-banded armadilloXenarthraTolypeutes matacusHLtolMat1 GCA_004025125.1_TolMat_v1_BIUU183749
    292Chinese rufous horseshoe batChiropteraRhinolophus sinicusHLrhiSin1 GCA_001888835.1_ASM188883v189399
    293great roundleaf batChiropteraHipposideros armigerHLhipArm1 GCA_001890085.1_ASM189008v1186990
    294black flying foxChiropteraPteropus alectoAug 2012 (ASM32557v1/pteAle1)9402
    295greater horseshoe batChiropteraRhinolophus ferrumequinumHLrhiFer5/Bat1K59479
    296Bonin flying foxChiropteraPteropus pselaphonHLptePse1 GCA_014363405.11496133
    297Brazilian free-tailed batChiropteraTadarida brasiliensisHLtadBra1 GCA_004025005.1_TadBra_v1_BIUU9438
    298large flying foxChiropteraPteropus vampyrusHLpteVam2 GCA_000151845.2132908
    299Malagasy flying foxChiropteraPteropus rufusDNA zoo Pteropus rufus196297
    300Indian flying foxChiropteraPteropus giganteusHLpteGig1 GCA_902729225.1143291
    301Malagasy straw-colored fruit batChiropteraEidolon dupreanumDNA zoo Eidolon dupreanum58063
    302straw-colored fruit batChiropteraEidolon helvumDNA zoo Eidolon helvum77214
    303Cantor's roundleaf batChiropteraHipposideros galeritusHLhipGal1 GCA_004027415.1_HipGal_v1_BIUU58069
    304lesser short-nosed fruit batChiropteraCynopterus brachyotisHLcynBra1 GCA_009793145.158060
    305lesser dawn batChiropteraEonycteris spelaeaHLeonSpe1 GCA_003508835.158065
    306Leschenault's rousetteChiropteraRousettus leschenaultiiHLrouLes1 GCA_015472975.19408
    307Egyptian rousetteChiropteraRousettus aegyptiacusHLrouAeg4/Bat1K9407
    308Madagascan rousetteChiropteraRousettus madagascariensisDNA zoo Rousettus madagascariensis77223
    309Indian false vampireChiropteraMegaderma lyraHLmegLyr2 GCA_004026885.1_MegLyr_v1_BIUU9413
    310Pallas's mastiff batChiropteraMolossus molossusHLmolMol2/Bat1K27622
    311long-tongued fruit batChiropteraMacroglossus sobrinusHLmacSob1 GCA_004027375.1_MacSob_v1_BIUU326083
    312Schreibers' long-fingered batChiropteraMiniopterus schreibersiiHLminSch1 GCA_004026525.1_MinSch_v1_BIUU9433
    313Miniopterus schreibersii natalensisChiropteraMiniopterus natalensisHLminNat1 GCA_001595765.1291302
    314hog-nosed batChiropteraCraseonycteris thonglongyaiHLcraTho1 GCA_004027555.1_CraTho_v1_BIUU208972
    315Antillean ghost-faced batChiropteraMormoops blainvilleiHLmorBla1 GCA_004026545.1_MorMeg_v1_BIUU118852
    316Parnell's mustached batChiropteraPteronotus parnelliiSep. 2013 (ASM46540v1/ptePar1)59476
    317big brown batChiropteraEptesicus fuscusJul 2012 (EptFus1.0/eptFus1)29078
    318greater mouse-eared batChiropteraMyotis myotisHLmyoMyo6/Bat1K51298
    319Brandt's batChiropteraMyotis brandtii28 Jun 2013 (ASM41265v1/myoBra1)109478
    320common vampire batChiropteraDesmodus rotundusHLdesRot2/Bat1K9430
    321California big-eared batChiropteraMacrotus californicusHLmacCal1 GCA_007922815.19419
    322Northern long-eared myotisChiropteraMyotis septentrionalisDNA zoo Myotis septentrionalis258941
    323little brown batChiropteraMyotis lucifugusDNA zoo Myotis lucifugus59463
    324little brown batChiropteraMyotis lucifugusJul. 2010 (Broad Institute Myoluc2.0/myoLuc2)59463
    325Lesser long-nosed batChiropteraLeptonycteris yerbabuenaeHLlepYer1/GIGADB700936
    326Vespertilio DavidiiChiropteraMyotis davidiiAug 2012 (ASM32734v1/myoDav1)225400
    327Schizostoma hirsutumChiropteraMicronycteris hirsutaHLmicHir1 GCA_004026765.1_MicHir_v1_BIUU148065
    328tailed tailless batChiropteraAnoura caudiferHLanoCau1 GCA_004027475.1_AnoCau_v1_BIUU27642
    329Murina feaeChiropteraMurina aurata feaeHLmurAurFea1 GCA_004026665.1_MurFea_v1_BIUU1453894
    330greater bulldog batChiropteraNoctilio leporinusHLnocLep1 GCA_004026585.1_NocLep_v1_BIUU94963
    331Seba's short-tailed batChiropteraCarollia perspicillataHLcarPer3 GCA_004027735.1_CarPer_v1_BIUU40233
    332pale spear-nosed batChiropteraPhyllostomus discolorHLphyDis3/Bat1K89673
    333stripe-headed round-eared batChiropteraTonatia saurophilaHLtonSau1 GCA_004024845.1_TonSau_v1_BIUU171122
    334Jamaican fruit-eating batChiropteraArtibeus jamaicensisHLartJam1 GCA_004027435.1_ArtJam_v1_BIUU9417
    335Jamaican fruit-eating batChiropteraArtibeus jamaicensisHLartJam2 GCA_014825515.19417
    336Honduran yellow-shouldered batChiropteraSturnira hondurensisHLstuHon1 GCA_014824575.1192404
    337hoary batChiropteraAeorestes cinereusHLaeoCin1 GCA_011751065.1257879
    338pallid batChiropteraAntrozous pallidusHLantPal1 GCA_007922775.19440
    339evening batChiropteraNycticeius humeralisHLnycHum2 GCA_007922795.127670
    340red batChiropteraLasiurus borealisHLlasBor1 GCA_004026805.1_LasBor_v1_BIUU258930
    341Kuhl's pipistrelleChiropteraPipistrellus kuhliiHLpipKuh2/Bat1K59472
    342common pipistrelleChiropteraPipistrellus pipistrellusHLpipPip1 GCA_004026625.1_PipPip_v1_BIUU59474
    343common pipistrelleChiropteraPipistrellus pipistrellusHLpipPip2 GCA_903992545.159474
    344gray squirrelGliresSciurus carolinensisHLsciCar1 GCA_902686445.130640
    345Eurasian red squirrelGliresSciurus vulgarisHLsciVul1 GCA_902686455.1_mSciVul1.155149
    346South African ground squirrelGliresXerus inaurisHLxerIna1 GCA_004024805.1_XerIna_v1_BIUU234690
    347mountain beaverGliresAplodontia rufaHLaplRuf1 GCA_004027875.1_AplRuf_v1_BIUU51342
    348yellow-bellied marmotGliresMarmota flaviventrisHLmarFla1 GCA_003676075.293162
    349Alpine marmotGliresMarmota marmota marmotaHLmarMar1 GCF_001458135.1_marMar2.19994
    350Vancouver Island marmotGliresMarmota vancouverensisHLmarVan1 GCA_005458795.193167
    351Himalayan marmotGliresMarmota himalayanaHLmarHim1 GCA_005280165.193163
    352Daurian ground squirrelGliresSpermophilus dauricusHLspeDau1 GCA_002406435.1_ASM240643v199837
    353woodchuckGliresMarmota monaxHLmarMon1 GCA_901343595.1_MONAX59995
    354woodchuckGliresMarmota monaxHLmarMon2 GCA_014533835.19995
    355Arctic ground squirrelGliresUrocitellus parryiiHLuroPar1 GCA_003426925.19999
    356Gunnison's prairie dogGliresCynomys gunnisoniHLcynGun1 GCA_011316645.145479
    357thirteen-lined ground squirrelGliresIctidomys tridecemlineatusNov. 2011 (Broad/speTri2)43179
    358Fat dormouseGliresGlis glisHLgliGli1 GCA_004027185.1_GliGli_v1_BIUU41261
    359springhareGliresPedetes capensisHLpedCap1 GCA_007922755.110023
    360American beaverGliresCastor canadensisDNA zoo Castor canadensis51338
    361woodland dormouseGliresGraphiurus murinusHLgraMur1 GCA_004027655.1_GraMur_v1_BIUU51346
    362Mountain hareGliresLepus timidusHLlepTim1 GCA_009760805.162621
    363snowshoe hareGliresLepus americanusHLlepAme1 GCA_004026855.1_LepAme_v1_BIUU48086
    364European rabbitGliresOryctolagus cuniculus cuniculusHLoryCunCun4 GCA_013371645.1568996
    365rabbitGliresOryctolagus cuniculusApr. 2009 (Broad/oryCun2)9986
    366rabbitGliresOryctolagus cuniculusHLoryCun3 GCA_009806435.19986
    367brush rabbitGliresSylvilagus bachmaniDNA zoo Sylvilagus bachmani365149
    368crested porcupineGliresHystrix cristataHLhysCri1 GCA_004026905.1_HysCri_v1_BIUU10137
    369North American porcupineGliresErethizon dorsatumHLereDor1 GCA_006547115.134844
    370Brazilian porcupineGliresCoendou prehensilisDNA zoo Coendou prehensilis187985
    371hazel dormouseGliresMuscardinus avellanariusHLmusAve1 GCA_004027005.1_MusAve_v1_BIUU39082
    372naked mole-ratGliresHeterocephalus glaberJan. 2012 (Broad HetGla_female_1.0/hetGla2)10181
    373Damara mole-ratGliresFukomys damarensisHLfukDam2 GCA_012274545.1885580
    374Upper Galilee mountains blind mole ratGliresNannospalax galiliJun 2014 (S.galili_v1.0/nanGal1)1026970
    375long-tailed chinchillaGliresChinchilla lanigeraMay 2012 (ChiLan1.0/chiLan1)34839
    376punctate agoutiGliresDasyprocta punctataHLdasPun1 GCA_004363535.1_DasPun_v1_BIUU34846
    377northern gundiGliresCtenodactylus gundiHLcteGun1 GCA_004027205.1_CteGun_v1_BIUU10166
    378Gobi jerboaGliresAllactaga bullataHLallBul1 GCA_004027895.1_AllBul_v1_BIUU1041416
    379Stephens's kangaroo ratGliresDipodomys stephensiHLdipSte1 GCA_004024685.1_DipSte_v1_BIUU323379
    380Ord's kangaroo ratGliresDipodomys ordiiDec. 2014 (Dord_2.0/dipOrd2)10020
    381hoary bamboo ratGliresRhizomys pruinosusHLrhiPru1 GCA_009823505.153275
    382pacaranaGliresDinomys branickiiHLdinBra1 GCA_004027595.1_DinBra_v1_BIUU108858
    383lesser Egyptian jerboaGliresJaculus jaculusMay 2012 (JacJac1.0/jacJac1)51337
    384meadow jumping mouseGliresZapus hudsoniusHLzapHud1 GCA_004024765.1_ZapHud_v1_BIUU160400
    385Patagonian cavyGliresDolichotis patagonumHLdolPat1 GCA_004027295.1_DolPat_v1_BIUU29091
    386Pacific pocket mouseGliresPerognathus longimembris pacificusHLperLonPac1 GCA_004363475.1_PerLonPac_v1_BIUU214514
    387capybaraGliresHydrochoerus hydrochaerisHLhydHyd1 GCA_004027455.1_HydHyd_v1_BIUU10149
    388American pikaGliresOchotona princepsMay 2012 (OchPri3.0/ochPri3)9978
    389Brazilian guinea pigGliresCavia apereaJan. 2014 (CavAp1.0/cavApe1)37548
    390dassie-ratGliresPetromus typicusHLpetTyp1 GCA_004026965.1_PetTyp_v1_BIUU10183
    391Montane guinea pigGliresCavia tschudiiHLcavTsc1 GCA_004027695.1_CavTsc_v1_BIUU143287
    392domestic guinea pigGliresCavia porcellusFeb. 2008 (Broad/cavPor3)10141
    393Greater cane ratGliresThryonomys swinderianusHLthrSwi1 GCA_004025085.1_ThrSwi_v1_BIUU10169
    394deguGliresOctodon degusApr 2012 (OctDeg1.0/octDeg1)10160
    395Gambian giant pouched ratGliresCricetomys gambianusHLcriGam1 GCA_004027575.1_CriGam_v1_BIUU10085
    396desert woodratGliresNeotoma lepidaHLneoLep1 GCA_001675575.156216
    397social tuco-tucoGliresCtenomys sociabilisHLcteSoc1 GCA_004027165.1_CteSoc_v1_BIUU43321
    398nutriaGliresMyocastor coypusHLmyoCoy1 GCA_004027025.1_MyoCoy_v1_BIUU10157
    399northern rock mouseGliresPeromyscus nasutusDNA zoo Peromyscus nasutus97212
    400Chinese hamsterGliresCricetulus griseusHLcriGri3 GCA_003668045.110029
    401Hesperomys crinitusGliresPeromyscus crinitusDNA zoo Peromyscus crinitus144753
    402muskratGliresOndatra zibethicusHLondZib1 GCA_004026605.1_OndZib_v1_BIUU10060
    403Peromyscus californicus subsp. insignisGliresPeromyscus californicus insignisHLperCal2 GCA_007827085.2564181
    404cactus mouseGliresPeromyscus eremicusHLperEre1 GCA_902702925.142410
    405southern grasshopper mouseGliresOnychomys torridusHLonyTor1 GCA_903995425.138674
    406golden hamsterGliresMesocricetus auratusMar 2013 (MesAur1.0/mesAur1)10036
    407white-footed mouseGliresPeromyscus leucopusHLperLeu1 GCA_004664715.110041
    408Northern mole voleGliresEllobius talpinusHLellTal1 GCA_001685095.1_ETalpinus_0.1329620
    409oldfield mouseGliresPeromyscus polionotus subgriseusHLperPol1 GCA_003704135.2369710
    410prairie deer mouseGliresPeromyscus maniculatus bairdiiHLperManBai2 GCA_003704035.1230844
    411hispid cotton ratGliresSigmodon hispidusHLsigHis1 GCA_004025045.1_SigHis_v1_BIUU42415
    412Transcaucasian mole voleGliresEllobius lutescensHLellLut1 GCA_001685075.1_ASM168507v139086
    413Bank voleGliresMyodes glareolusHLmyoGla2 GCA_902806735.1447135
    414Eurasian water voleGliresArvicola amphibiusHLarvAmp1 GCA_903992535.11047088
    415fat sand ratGliresPsammomys obesusHLpsaObe1 GCA_002215935.248139
    416golden spiny mouseGliresAcomys russatusHLacoRus1 GCA_903995435.160746
    417African woodland thicket ratGliresGrammomys surdasterHLgraSur1 GCA_004785775.1491861
    418African grass ratGliresArvicanthis niloticusHLarvNil1 GCA_011762505.1_mArvNil1.pat.X61156
    419root voleGliresMicrotus oeconomusHLmicOec1 GCA_007455595.164717
    420short-tailed field voleGliresMicrotus agrestisHLmicAgr2 GCA_902806775.129092
    421reed voleGliresMicrotus fortisHLmicFor1 GCA_014885135.1100897
    422Egyptian spiny mouseGliresAcomys cahirinusHLacoCah1 GCA_004027535.1_AcoCah_v1_BIUU10068
    423Common voleGliresMicrotus arvalisHLmicArv1 GCA_007455615.147230
    424prairie voleGliresMicrotus ochrogasterOct. 2012 (MicOch1.0/micOch1)79684
    425great gerbilGliresRhombomys opimusHLrhoOpi1 GCA_010120015.1186474
    426southern multimammate mouseGliresMastomys couchaHLmasCou1 GCA_008632895.135658
    427Mongolian gerbilGliresMeriones unguiculatusHLmerUng1 GCA_002204375.110047
    428black ratGliresRattus rattusHLratRat7 GCA_011064425.110117
    429Norway ratGliresRattus norvegicusHLratNor7 GCA_015227675.110116
    430Norway ratGliresRattus norvegicusJul. 2014 (RGSC 6.0/rn6)10116
    431shrew mouseGliresMus pahariHLmusPah1 GCA_900095145.210093
    432Ryukyu mouseGliresMus caroliHLmusCar1 GCA_900094665.2_CAROLI_EIJ_v1.110089
    433steppe mouseGliresMus spicilegusHLmusSpi1 GCA_003336285.110103
    434house mouseGliresMus musculusJun. 2020 (GRCm39/mm39)10090
    435house mouseGliresMus musculusDec. 2011 (GRCm38/mm10)10090
    436western wild mouseGliresMus spretusHLmusSpr1 GCA_001624865.1_SPRET_EiJ_v110096
    437European woodmouseGliresApodemus sylvaticusHLapoSyl1 GCA_001305905.110129
    438dugongAfrotheriaDugong dugonHLdugDug1 GCA_015147995.129137
    439Florida manateeAfrotheriaTrichechus manatus latirostrisOct. 2011 (Broad v1.0/triMan1)127582
    440Asiatic elephantAfrotheriaElephas maximusDNA zoo Elephas maximus9783
    441African savanna elephantAfrotheriaLoxodonta africanaHLloxAfr4/Broad Institute/loxAfr49785
    442aardvarkAfrotheriaOrycteropus afer aferMay 2012 (OryAfe1.0/oryAfe1)1230840
    443Steller's sea cowAfrotheriaHydrodamalis gigasHLhydGig1 GCA_013391785.163631
    444Cape golden moleAfrotheriaChrysochloris asiaticaAug 2012 (ChrAsi1.0/chrAsi1)185453
    445yellow-spotted hyraxAfrotheriaHeterohyrax bruceiHLhetBru1 GCA_004026845.1_HetBruBak_v1_BIUU77598
    446Cape rock hyraxAfrotheriaProcavia capensisHLproCap3 GCA_004026925.29813
    447Cape elephant shrewAfrotheriaElephantulus edwardiiAug 2012 (EleEdw1.0/eleEdw1)28737
    448small Madagascar hedgehogAfrotheriaEchinops telfairiNov. 2012 (Broad/echTel2)9371
    449Talazac's shrew tenrecAfrotheriaMicrogale talazaciHLmicTal1 GCA_004026705.1_MicTal_v1_BIUU176115
    450common wombatMetatheriaVombatus ursinusHLvomUrs1 GCA_900497805.229139
    451koalaMetatheriaPhascolarctos cinereusHLphaCin1 GCA_002099425.138626
    452Agile Gracile Mouse OpossumMetatheriaGracilinanus agilisHLgraAgi1 GCA_016433145.1191870
    453common brushtailMetatheriaTrichosurus vulpeculaHLtriVul1 GCA_011100635.1_mTriVul1.pri9337
    454North American opossumMetatheriaDidelphis virginianaDNA zoo Didelphis virginiana9267
    455ground cuscusMetatheriaPhalanger gymnotisDNA zoo Phalanger gymnotis65615
    456gray short-tailed opossumMetatheriaMonodelphis domesticaOct. 2006 (Broad/monDom5)13616
    457Leadbeater's possumMetatheriaGymnobelideus leadbeateriHLgymLea1 GCA_011680675.138618
    458Tasmanian wolfMetatheriaThylacinus cynocephalusHLthyCyn1 GCA_007646695.19275
    459coppery ringtail possumMetatheriaPseudochirops cupreusDNA zoo Pseudochirops cupreus37702
    460eastern gray kangarooMetatheriaMacropus giganteusDNA zoo Macropus giganteus9317
    461golden ringtail possumMetatheriaPseudochirops corinnaeDNA zoo Pseudochirops corinnae65629
    462western gray kangarooMetatheriaMacropus fuliginosusDNA zoo Macropus fuliginosus9316
    463tammar wallabyMetatheriaMacropus eugeniiDNA zoo Macropus eugenii9315
    464red kangarooMetatheriaOsphranter rufusDNA zoo Osphranter rufus9321
    465Western ringtail oppossumMetatheriaPseudocheirus occidentalisDNA zoo Pseudocheirus occidentalis656515
    466tammar wallabyMetatheriaMacropus eugeniiSep. 2009 (TWGS Meug_1.1/macEug2)9315
    467yellow-footed antechinusMetatheriaAntechinus flavipesHLantFla1 GCA_016432865.1_AdamAnt38775
    468Tasmanian devilMetatheriaSarcophilus harrisiiHLsarHar2 GCA_902635505.19305
    469platypusMonotremataOrnithorhynchus anatinusHLornAna3 GCA_004115215.19258
    470Australian echidnaMonotremataTachyglossus aculeatusHLtacAcu1 GCA_015852505.19261

    \ Table 1. Genome assemblies included in the 470-way Conservation track.\

    \ \

    Display Conventions and Configuration

    \

    \ In full and pack display modes, conservation scores are displayed as a\ wiggle track (histogram) in which the height reflects the\ size of the score.\ The conservation wiggles can be configured in a variety of ways to\ highlight different aspects of the displayed information.\ Click the Graph configuration help link for an explanation\ of the configuration options.

    \

    \ Pairwise alignments of each species to the human genome are\ displayed below the conservation histogram as a grayscale density plot (in\ pack mode) or as a wiggle (in full mode) that indicates alignment quality.\ In dense display mode, conservation is shown in grayscale using\ darker values to indicate higher levels of overall conservation\ as scored by phastCons.

    \

    \ Checkboxes on the track configuration page allow selection of the\ species to include in the pairwise display.\ Note that excluding species from the pairwise display does not alter the\ the conservation score display.

    \

    \ To view detailed information about the alignments at a specific\ position, zoom the display in to 30,000 or fewer bases, then click on\ the alignment.

    \ \

    Gap Annotation

    \

    \ The Display chains between alignments configuration option\ enables display of gaps between alignment blocks in the pairwise alignments in\ a manner similar to the Chain track display. Missing sequence in any\ assembly is highlighted in the track display by regions of yellow when zoomed\ out and by Ns when displayed at base level. The following conventions are used:\

      \
    • Single line: No bases in the aligned species. Possibly due to a\ lineage-specific insertion between the aligned blocks in the human genome\ or a lineage-specific deletion between the aligned blocks in the aligning\ species.\
    • Double line: Aligning species has one or more unalignable bases in\ the gap region. Possibly due to excessive evolutionary distance between\ species or independent indels in the region between the aligned blocks in both\ species.\
    • Pale yellow coloring: Aligning species has Ns in the gap region.\ Reflects uncertainty in the relationship between the DNA of both species, due\ to lack of sequence in relevant portions of the aligning species.\

    \ \

    Genomic Breaks

    \

    \ Discontinuities in the genomic context (chromosome, scaffold or region) of the\ aligned DNA in the aligning species are shown as follows:\

      \
    • \ Vertical blue bar: Represents a discontinuity that persists indefinitely\ on either side, e.g. a large region of DNA on either side of the bar\ comes from a different chromosome in the aligned species due to a large scale\ rearrangement.\
    • \ Green square brackets: Enclose shorter alignments consisting of DNA from\ one genomic context in the aligned species nested inside a larger chain of\ alignments from a different genomic context. The alignment within the\ brackets may represent a short misalignment, a lineage-specific insertion of a\ transposon in the human genome that aligns to a paralogous copy somewhere\ else in the aligned species, or other similar occurrence.\

    \ \

    Base Level

    \

    \ When zoomed-in to the base-level display, the track shows the base\ composition of each alignment. The numbers and symbols on the Gaps\ line indicate the lengths of gaps in the human sequence at those\ alignment positions relative to the longest non-human sequence.\ If there is sufficient space in the display, the size of the gap is shown.\ If the space is insufficient and the gap size is a multiple of 3, a\ "*" is displayed; other gap sizes are indicated by "+".

    \

    \ Codon translation is available in base-level display mode if the\ displayed region is identified as a coding segment. To display this annotation,\ select the species for translation from the pull-down menu in the Codon\ Translation configuration section at the top of the page. Then, select one of\ the following modes:\

      \
    • \ No codon translation: The gene annotation is not used; the bases are\ displayed without translation.\
    • \ Use default species reading frames for translation: The annotations from\ the genome displayed in the Default species to establish reading frame\ pull-down menu are used to translate all the aligned species present in the\ alignment.\
    • \ Use reading frames for species if available, otherwise no translation:\ Codon translation is performed only for those species where the region is\ annotated as protein coding.\
    • Use reading frames for species if available, otherwise use default species:\ Codon translation is done on those species that are annotated as being protein\ coding over the aligned region using species-specific annotation; the remaining\ species are translated using the default species annotation.\

    \

    \ Codon translation uses the following gene tracks as the basis for translation:\

    \ \ \ \ \ \
    Gene TrackSpecies
    RefSeq Genesaardvark, American pika, Amur tiger, Angolan colobus, big brown bat, black flying fox, black snub-nosed monkey, Bolivian squirrel monkey, Brandt's bat, Cape elephant shrew, Cape golden mole, cattle, chimpanzee, Chinese tree shrew, Coquerel's sifaka, degu, dog, domestic cat, domestic guinea pig, drill, European shrew, Florida manatee, golden hamster, gray mouse lemur, green monkey, Hawaiian monk seal, horse, house mouse, house mouse, human, killer whale, lesser Egyptian jerboa, little brown bat, long-tailed chinchilla, Ma's night monkey, minke whale, naked mole-rat, nine-banded armadillo, Northern sea otter, Norway rat, Ord's kangaroo rat, Pacific walrus, Panamanian white-faced capuchin, Philippine tarsier, pig, pig-tailed macaque, polar bear, prairie vole, Przewalski's horse, pygmy chimpanzee, rabbit, Rhesus monkey, small Madagascar hedgehog, small-eared galago, sooty mangabey, southern white rhinoceros, star-nosed mole, Sumatran orangutan, thirteen-lined ground squirrel, Upper Galilee mountains blind mole rat, Vespertilio Davidii, Weddell seal, western European hedgehog, western lowland gorilla, Yangtze River dolphin
    Ensembl GenesBos bison bison, Brazilian guinea pig, dog, gray short-tailed opossum, northern tree shrew
    Xeno RefGenealpaca, black lemur, Chinese pangolin, common bottlenose dolphin, proboscis monkey, Sclater's lemur, Southern sea otter, tammar wallaby
    no annotationAfrican buffalo, African grass rat, African hunting dog, African hunting dog, African savanna elephant, African woodland thicket rat, Agile Gracile Mouse Opossum, Allen's swamp monkey, Alpine ibex, Alpine marmot, alpine musk deer, American beaver, American black bear, American black bear, American mink, Amur leopard cat, antarctic fur seal, Antarctic minke whale, Antillean ghost-faced bat, aoudad, Arabian camel, Arctic fox, Arctic ground squirrel, argali, Asian black bear, Asian palm civet, Asiatic elephant, Asiatic mouflon, Asiatic tapir, Asiatic tapir, ass, Australian echidna, aye-aye, babakoto, Bactrian camel, banded mongoose, Bank vole, bearded seal, beluga whale, bighorn sheep, bighorn sheep, black muntjac, black rat, black rhinoceros, black-footed cat, black-handed spider monkey, Blue whale, Bohar reedbuck, Bolivian squirrel monkey, Bolivian titi, Bonin flying fox, boutu, bowhead whale, Brazilian free-tailed bat, Brazilian porcupine, Brazilian tapir, brindled gnu, brown lemur, brush rabbit, bush duiker, bushbuck, Cacomistle, cactus mouse, California big-eared bat, California sea lion, Canada lynx, Cantor's roundleaf bat, Cape rock hyrax, capybara, Central European red deer, Chacoan peccary, cheetah, Chinese forest musk deer, Chinese hamster, Chinese pangolin, Chinese rufous horseshoe bat, Chinese water deer, chiru, Clouded leopard, Cobus hunteri, common bottlenose dolphin, common bottlenose dolphin, common brushtail, common pipistrelle, common pipistrelle, common vampire bat, Common vole, common wombat, coppery ringtail possum, Coquerel's mouse lemur, crab-eating macaque, crested porcupine, Cuvier's beaked whale, Damara mole-rat, dassie-rat, Daurian ground squirrel, De Brazza's monkey, desert woodrat, dingo, domestic ferret, domestic yak, donkey, dugong, dwarf mongoose, eastern gray kangaroo, eastern mole, Eastern roe deer, Egyptian rousette, Egyptian spiny mouse, Equus burchelli boehmi, ermine, Eurasian elk, Eurasian red squirrel, Eurasian river otter, Eurasian water vole, European polecat, European rabbit, European woodmouse, evening bat, Fat dormouse, fat sand rat, Fin whale, fossa, franciscana, Francois's langur, Gambian giant pouched rat, gaur, gayal, gelada, gemsbok, gerenuk, giant anteater, giant otter, giant otter, giant panda, giraffe, giraffe, goat, Gobi jerboa, golden ringtail possum, golden snub-nosed monkey, golden spiny mouse, gracile shrew mole, Grant's gazelle, gray seal, gray squirrel, great gerbil, great roundleaf bat, greater bamboo lemur, greater bulldog bat, Greater cane rat, greater horseshoe bat, greater Indian rhinoceros, greater kudu, greater mouse-eared bat, grey whale, grizzly bear, ground cuscus, guanaco, Gunnison's prairie dog, Hanuman langur, harbor porpoise, harbor porpoise, harbor seal, Harvey's duiker, hazel dormouse, Hesperomys crinitus, Himalayan marmot, hippopotamus, hippopotamus, Hispaniolan solenodon, hispid cotton rat, hoary bamboo rat, hoary bat, Hoffmann's two-fingered sloth, Hog deer, hog-nosed bat, Honduran yellow-shouldered bat, humpback whale, Iberian mole, impala, Indian false vampire, Indian flying fox, Indo-pacific bottlenose dolphin, Indo-pacific bottlenose dolphin, Indo-pacific humpbacked dolphin, Indus River dolphin, jaguar, jaguar, jaguarundi, Jamaican fruit-eating bat, Jamaican fruit-eating bat, Japanese macaque, Java mouse-deer, kinkajou, Kirk's dik-dik, klipspringer, koala, Kuhl's pipistrelle, Lama pacos huacaya, large flying fox, Leadbeater's possum, lechwe, leopard, Leschenault's rousette, lesser dawn bat, Lesser dwarf lemur, lesser kudu, Lesser long-nosed bat, lesser mouse-deer, lesser panda, lesser short-nosed fruit bat, lion, little brown bat, llama, llama, long-finned pilot whale, long-tongued fruit bat, Madagascan rousette, Malagasy flying fox, Malagasy straw-colored fruit bat, Malayan pangolin, Malayan pangolin, mandrill, mantled howler monkey, Masai giraffe, Maxwell's duiker, meadow jumping mouse, meerkat, meerkat, melon-headed whale, Miniopterus schreibersii natalensis, Mona monkey, Mongolian gerbil, mongoose lemur, Montane guinea pig, mountain beaver, mountain goat, Mountain hare, mouse lemur, mule deer, muntjak, Murina feae, muskrat, narwhal, Nilgiri tahr, North American badger, North American opossum, North American porcupine, North Atlantic right whale, North Pacific right whale, Northern American river otter, Northern elephant seal, northern fur seal, Northern giant mouse lemur, northern gundi, Northern long-eared myotis, Northern mole vole, northern rock mouse, Northern rufous mouse lemur, northern white rhinoceros, northern white-cheeked gibbon, Norway rat, nutria, okapi, oldfield mouse, olive baboon, pacarana, Pacific pocket mouse, Pacific white-sided dolphin, pale spear-nosed bat, Pallas's mastiff bat, pallid bat, Parnell's mustached bat, Patagonian cavy, Pere David's deer, Peromyscus californicus subsp. insignis, platypus, porcupine caribou, prairie deer mouse, pronghorn, Przewalski's gazelle, puma, punctate agouti, pygmy Bryde's whale, pygmy marmoset, pygmy sperm whale, rabbit, raccoon, ratel, red bat, red fox, red guenon, red kangaroo, Red shanked douc langur, reed vole, Reeves' muntjac, reindeer, Ring-tailed lemur, roan antelope, root vole, royal antelope, Ryukyu mouse, sable, sable antelope, saiga antelope, Schizostoma hirsutum, Schreibers' long-fingered bat, scimitar-horned oryx, Sclater's lemur, Seba's short-tailed bat, sheep, short-tailed field vole, shrew mouse, Siberian ibex, Siberian musk deer, silvery gibbon, slow loris, snow sheep, snowshoe hare, social tuco-tuco, South African ground squirrel, Southern elephant seal, southern grasshopper mouse, southern multimammate mouse, southern tamandua, Southern three-banded armadillo, southern two-toed sloth, southern two-toed sloth, Sowerby's beaked whale, Spanish lynx, sperm whale, sperm whale, spotted hyena, springbok, springhare, steenbok, Steller sea lion, Steller's sea cow, Stephens's kangaroo rat, steppe mouse, straw-colored fruit bat, stripe-headed round-eared bat, striped hyena, Sumatran rhinoceros, Sunda flying lemur, suni, tailed tailless bat, Talazac's shrew tenrec, tamarin, tammar wallaby, Tasmanian devil, Tasmanian wolf, Thomson's gazelle, topi, Transcaucasian mole vole, Tree pangolin, Tree pangolin, tufted capuchin, Ugandan red Colobus, Vancouver Island marmot, vaquita, Vicugna mensalis, walrus, water buffalo, waterbuck, western gray kangaroo, Western ringtail oppossum, western spotted skunk, western wild mouse, white-faced saki, white-footed mouse, white-fronted capuchin, white-lipped deer, White-nosed coati, white-tailed deer, white-tailed deer, white-tailed deer, white-tufted-ear marmoset, Wild Bactrian camel, wild goat, wild yak, wolverine, woodchuck, woodchuck, woodland dormouse, Yangtze finless porpoise, Yarkand deer, yellow-bellied marmot, yellow-footed antechinus, yellow-spotted hyrax, zebu cattle,\
    \ Table 2. Gene tracks used for codon translation.\

    \ \

    Methods

    \

    \ Pairwise alignments with the human genome were generated for\ each species using lastz from repeat-masked genomic sequence.\ Pairwise alignments were then linked into chains using a dynamic programming\ algorithm that finds maximally scoring chains of gapless subsections\ of the alignments organized in a kd-tree.\ The scoring matrix and parameters for pairwise alignment and chaining\ were tuned for each species based on phylogenetic distance from the reference.\ High-scoring chains were then placed along the genome, with\ gaps filled by lower-scoring chains, to produce an alignment net.\

    \ \

    Phylogenetic Tree Model

    \

    \ The phyloP are phylogenetic methods that rely\ on a tree model containing the tree topology, branch lengths representing\ evolutionary distance at neutrally evolving sites, the background distribution\ of nucleotides, and a substitution rate matrix.\ The\ all-species tree model for this track was\ generated using the phyloFit program from the PHAST package\ (REV model, EM algorithm, medium precision) using multiple alignments of\ 4-fold degenerate sites extracted from the 470-way alignment\ (msa_view). The 4d sites were derived from the RefSeq (Reviewed+Coding) gene\ set, filtered to select single-coverage long transcripts.\

    \

    \ This same tree model was used in the phyloP calculations; however, the\ background frequencies were modified to maintain reversibility.\ The resulting tree model:\ all species.\

    \

    PhyloP Conservation

    \

    \ The phyloP program supports several different methods for computing\ p-values of conservation or acceleration, for individual nucleotides or\ larger elements (\ http://compgen.cshl.edu/phast/). Here it was used\ to produce separate scores at each base (--wig-scores option), considering\ all branches of the phylogeny rather than a particular subtree or lineage\ (i.e., the --subtree option was not used). The scores were computed by\ performing a likelihood ratio test at each alignment column (--method LRT),\ and scores for both conservation and acceleration were produced (--mode\ CONACC).\

    \ \

    Credits

    \

    This track was created using the following programs:\

      \
    • Alignment tools: lastz (formerly blastz) and multiz by Minmei Hou, Scott Schwartz and Webb\ Miller of the Penn State Bioinformatics Group\
    • Chaining and Netting: axtChain, chainNet by Jim Kent at UCSC\
    • Conservation scoring: phastCons, phyloP, phyloFit, tree_doctor, msa_view and\ other programs in PHAST by\ Adam Siepel at Cold Spring Harbor Laboratory (original development\ done at the Haussler lab at UCSC).\
    • MAF Annotation tools: mafAddIRows by Brian Raney, UCSC; mafAddQRows\ by Richard Burhans, Penn State; genePredToMafFrames by Mark Diekhans, UCSC\
    • Tree image generator: phyloPng by Galt Barber, UCSC\
    • Conservation track display: Kate Rosenbloom, Hiram Clawson (wiggle\ display), and Brian Raney (gap annotation and codon framing) at UCSC\
    \

    \ \

    References

    \

    \ Harris RS.\ Improved pairwise alignment of genomic DNA.\ Ph.D. Thesis. Pennsylvania State University, USA. 2007.\

    \ \

    PhyloP:

    \

    \ Cooper GM, Stone EA, Asimenos G, NISC Comparative Sequencing Program., Green ED, Batzoglou S, Sidow\ A.\ \ Distribution and intensity of constraint in mammalian genomic sequence.\ Genome Res. 2005 Jul;15(7):901-13.\ PMID: 15965027;\ PMC: PMC1172034;\ DOI: 10.1101/gr.3577405\

    \ \

    \ Pollard KS, Hubisz MJ, Rosenbloom KR, Siepel A.\ \ Detection of nonneutral substitution rates on mammalian phylogenies.\ Genome Res. 2010 Jan;20(1):110-21.\ PMID: 19858363;\ PMC: PMC2798823\

    \ \

    \ Siepel A, Haussler D.\ Phylogenetic Hidden Markov Models.\ In: Nielsen R, editor. Statistical Methods in Molecular Evolution.\ New York: Springer; 2005. pp. 325-351.\ DOI: 10.1007/0-387-27733-1_12\

    \ \

    \ Siepel A, Pollard KS, and Haussler D. New methods for detecting\ lineage-specific selection. In Proceedings of the 10th International\ Conference on Research in Computational Molecular Biology (RECOMB 2006), pp. 190-205.\ DOI: 10.1007/11732990_17\

    \ compGeno 1 compositeTrack on\ dragAndDrop subTracks\ group compGeno\ longLabel Multiz Alignment & Conservation (470 mammals)\ shortLabel Multiz 470-way\ subGroup1 view Views align=Multiz_Alignments phyloP=Basewise_Conservation_(phyloP) phastcons=Element_Conservation_(phastCons) elements=Conserved_Elements\ track cons470way\ type bed 4\ visibility hide\ cons470wayViewalign Multiz 470-way bed 4 Multiz Alignment & Conservation (470 mammals) 3 100 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Multiz Alignment & Conservation (470 mammals)\ parent cons470way\ shortLabel Multiz 470-way\ track cons470wayViewalign\ view align\ viewUi on\ visibility pack\ multiz100way Multiz Align wigMaf 0.0 1.0 Multiz Alignments of 100 Vertebrates 3 100 0 10 100 0 90 10 0 0 0 compGeno 1 altColor 0,90,10\ color 0, 10, 100\ defaultMaf multiz100wayDefault\ frames multiz100wayFrames\ group compGeno\ irows on\ itemFirstCharCase noChange\ longLabel Multiz Alignments of 100 Vertebrates\ noInherit on\ parent cons100wayViewalign on\ priority 100\ sGroup_Afrotheria loxAfr3 eleEdw1 triMan1 chrAsi1 echTel2 oryAfe1\ sGroup_Birds falChe1 falPer1 ficAlb2 zonAlb1 geoFor1 taeGut2 pseHum1 melUnd1 amaVit1 araMac1 colLiv1 anaPla1 galGal4 melGal1\ sGroup_Euarchontoglires tupChi1 speTri2 jacJac1 micOch1 criGri1 mesAur1 mm10 rn6 hetGla2 cavPor3 chiLan1 octDeg1 oryCun2 ochPri3\ sGroup_Fish tetNig2 fr3 takFla1 oreNil2 neoBri1 hapBur1 mayZeb1 punNye1 oryLat2 xipMac1 gasAcu1 gadMor1 danRer10 astMex1 lepOcu1 petMar2\ sGroup_Laurasiatheria susScr3 vicPac2 camFer1 turTru2 orcOrc1 panHod1 bosTau8 oviAri3 capHir1 equCab2 cerSim1 felCat8 canFam3 musFur1 ailMel1 odoRosDiv1 lepWed1 pteAle1 pteVam1 myoDav1 myoLuc2 eptFus1 eriEur2 sorAra2 conCri1\ sGroup_Mammal dasNov3 monDom5 sarHar1 macEug2 ornAna1\ sGroup_Primate panTro4 gorGor3 ponAbe2 nomLeu3 rheMac3 macFas5 papAnu2 chlSab2 calJac3 saiBol1 otoGar3\ sGroup_Sarcopterygii allMis1 cheMyd1 chrPic2 pelSin1 apaSpi1 anoCar2 xenTro7 latCha1\ shortLabel Multiz Align\ speciesCodonDefault hg38\ speciesDefaultOff speTri2 micOch1 criGri1 mesAur1 rn6 hetGla2 cavPor3 chiLan1 octDeg1 oryCun2 ochPri3 susScr3 vicPac2 camFer1 turTru2 orcOrc1 panHod1 bosTau8 oviAri3 capHir1 equCab2 cerSim1 felCat8 musFur1 ailMel1 odoRosDiv1 lepWed1 pteAle1 pteVam1 myoDav1 myoLuc2 eptFus1 eriEur2 sorAra2 conCri1 eleEdw1 triMan1 chrAsi1 echTel2 oryAfe1 dasNov3 sarHar1 macEug2 ornAna1 falChe1 falPer1 ficAlb2 zonAlb1 geoFor1 taeGut2 pseHum1 melUnd1 amaVit1 araMac1 colLiv1 anaPla1 melGal1 allMis1 cheMyd1 chrPic2 pelSin1 apaSpi1 anoCar2 latCha1 tetNig2 fr3 takFla1 oreNil2 neoBri1 hapBur1 mayZeb1 punNye1 oryLat2 xipMac1 gasAcu1 gadMor1 astMex1 lepOcu1 calJac3 chlSab2 gorGor3 jacJac1 macFas5 monDom5 nomLeu3 otoGar3 panTro4 papAnu2 ponAbe2 saiBol1 tupChi1 petMar2\ speciesDefaultOn hg38 canFam3 loxAfr3 xenTro7 danRer10 galGal4 rheMac3 mm10\ speciesGroups Primate Euarchontoglires Laurasiatheria Afrotheria Mammal Birds Sarcopterygii Fish\ subGroups view=align\ summary multiz100waySummary\ track multiz100way\ treeImage phylo/hg38_100way.png\ type wigMaf 0.0 1.0\ multiz30way Multiz Align wigMaf 0.0 1.0 Multiz Alignments of 30 mammals (27 primates) 3 100 0 10 100 0 90 10 0 0 0 compGeno 1 altColor 0,90,10\ color 0, 10, 100\ frames multiz30wayFrames\ group compGeno\ irows on\ itemFirstCharCase noChange\ longLabel Multiz Alignments of 30 mammals (27 primates)\ noInherit on\ parent cons30wayViewalign on\ priority 100\ sGroup_Primates panTro5 panPan2 gorGor5 ponAbe2 nomLeu3 nasLar1 rhiBie1 rhiRox1 colAng1 macFas5 rheMac8 papAnu3 macNem1 cerAty1 chlSab2 manLeu1 saiBol1 aotNan1 calJac3 cebCap1 tarSyr2 eulFla1 eulMac1 proCoq1 micMur3 otoGar3 mm10 canFam3 dasNov3\ shortLabel Multiz Align\ speciesCodonDefault hg38\ speciesGroups Primates\ subGroups view=align\ summary multiz30waySummary\ track multiz30way\ treeImage phylo/hg38_30way.png\ type wigMaf 0.0 1.0\ muscleDeMicheliCellType Muscle Cells bigBarChart Muscle RNA binned by cell type from De Micheli et al 2020 3 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=muscle-cell-atlas&gene=$$

    Description

    \

    \ This track displays data from A\ reference single-cell transcriptomic atlas of human skeletal muscle tissue\ reveals bifurcated muscle stem cell populations. Muscle tissue was\ analyzed using single-cell RNA-sequencing (scRNA-seq) and subsequent clustering\ distinguished 16 muscle-resident cell types based on their identified marker\ genes found in De Micheli et al., 2020. Muscle samples were from\ surgically discarded tissue taken from a wide variety of anatomical sites.

    \ \

    \ This track collection contains two bar chart tracks of RNA expression in the\ human muscle where cells are grouped by cell type \ (Muscle Cells) or biosample\ (Muscle Sample). \ The default track displayed is \ Muscle Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    stem cell
    adipose
    fibroblast
    immune
    muscle
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Muscle Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well. Note that the \ Muscle Sample subtrack is colored based on \ colors provided from Figure 1 from De Micheli et al., 2020.

    \ \ \ \

    Relevant Figures From De Micheli et al. 2020

    \ \

    \ Muscle tissue cell type populations.\ \

    \ \ Muscle Tissue Cell\ Populations\
    \ De Micheli et al. Skelet\ Muscle. 2020. / CC BY 4.0\ \ \

    Method

    \

    \ Muscle samples were taken from 10 healthy donors of ages ranging from 41-81\ years old from different sections of the face (F), trunk (T), and leg (L).\ Excessive fat and connective tissue were removed from the muscle samples prior\ to enzymatic dissociation. Next, libraries were prepared using the 10x Genomics\ 3' v2 or v3 library kit and sequenced on the Illumina NextSeq 500. This\ resulted in libraries with 200-250 million reads which were processed using Cell\ Ranger version 3.1. In total, over 22,000 RNA transcriptomic profiles were\ generated from all of the samples after quality control filtering. The single\ cell transcriptomes from all 10 datasets were integrated using a scRNA-seq\ integration method called Scanorama as described in the reference below.\ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Andrea De Micheli of the Cosgrove Laboratory at Cornell University\ and to the many authors who worked on producing and publishing this data set. The\ data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed Luis Nassar. The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ De Micheli AJ, Spector JA, Elemento O, Cosgrove BD.\ \ A reference single-cell transcriptomic atlas of human skeletal muscle tissue reveals bifurcated\ muscle stem cell populations.\ Skelet Muscle. 2020 Jul 6;10(1):19.\ PMID: 32624006; PMC: PMC7336639

    \ singleCell 1 barChartBars skeletal_muscle_cell_ACTA1+ smooth_muscle_cell_ACTA2+_MYH11+_MYL9+ adipocyte_APOD+_CFD+_PLAC9+ macrophage_C1QA+_CD74+ platelet_CD36+_VWF+ endothelial_cell_CLDN5+_PECAM1+ fibroblast_COL1A1+ fibroblast_DCN+_GSN+_MYOC+ fibroblast_FBN1+_MFAP5+_CD55+ erythroblast_HBA1+ endothelial_cell_HBA1+ B/T/NK_cell_IL7R+_PTPRC+_NKG7+ muscle_stem_cell_PAX7+_DLK1+_(MuSC1) muscle_stem_cell_PAX7-_MYF5+_(MuSC2) pericyte_RGS5+_MYL9+ macrophage_(inflammatory)_S100A9+_LYZ+\ barChartColors #d55acd #bb1b98 #fd8738 #da2f08 #b6513e #11b606 #b65928 #b35024 #b25023 #cf8b7e #419916 #fc344a #d33e3f #98672c #1dad0c #dc2c04\ barChartLabel Cell type\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/muscleDeMicheli/cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/muscleDeMicheli/cell_type.bb\ defaultLabelFields name\ html muscleDeMicheli\ labelFields name,name2\ longLabel Muscle RNA binned by cell type from De Micheli et al 2020\ parent muscleDeMicheli\ shortLabel Muscle Cells\ track muscleDeMicheliCellType\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=muscle-cell-atlas&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility pack\ muscleDeMicheli Muscle De Micheli Muscle single cell data from De Micheli et al 2020 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track displays data from A\ reference single-cell transcriptomic atlas of human skeletal muscle tissue\ reveals bifurcated muscle stem cell populations. Muscle tissue was\ analyzed using single-cell RNA-sequencing (scRNA-seq) and subsequent clustering\ distinguished 16 muscle-resident cell types based on their identified marker\ genes found in De Micheli et al., 2020. Muscle samples were from\ surgically discarded tissue taken from a wide variety of anatomical sites.

    \ \

    \ This track collection contains two bar chart tracks of RNA expression in the\ human muscle where cells are grouped by cell type \ (Muscle Cells) or biosample\ (Muscle Sample). \ The default track displayed is \ Muscle Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    stem cell
    adipose
    fibroblast
    immune
    muscle
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Muscle Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well. Note that the \ Muscle Sample subtrack is colored based on \ colors provided from Figure 1 from De Micheli et al., 2020.

    \ \ \ \ \

    Method

    \

    \ Muscle samples were taken from 10 healthy donors of ages ranging from 41-81\ years old from different sections of the face (F), trunk (T), and leg (L).\ Excessive fat and connective tissue were removed from the muscle samples prior\ to enzymatic dissociation. Next, libraries were prepared using the 10x Genomics\ 3' v2 or v3 library kit and sequenced on the Illumina NextSeq 500. This\ resulted in libraries with 200-250 million reads which were processed using Cell\ Ranger version 3.1. In total, over 22,000 RNA transcriptomic profiles were\ generated from all of the samples after quality control filtering. The single\ cell transcriptomes from all 10 datasets were integrated using a scRNA-seq\ integration method called Scanorama as described in the reference below.\ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Andrea De Micheli of the Cosgrove Laboratory at Cornell University\ and to the many authors who worked on producing and publishing this data set. The\ data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed Luis Nassar. The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ De Micheli AJ, Spector JA, Elemento O, Cosgrove BD.\ \ A reference single-cell transcriptomic atlas of human skeletal muscle tissue reveals bifurcated\ muscle stem cell populations.\ Skelet Muscle. 2020 Jul 6;10(1):19.\ PMID: 32624006; PMC: PMC7336639

    \ singleCell 0 group singleCell\ longLabel Muscle single cell data from De Micheli et al 2020\ shortLabel Muscle De Micheli\ superTrack on\ track muscleDeMicheli\ visibility hide\ muscleDeMicheliSample Muscle Sample bigBarChart Muscle RNA binned by biosample from De Micheli et al 2020 0 100 0 0 0 127 127 127 0 0 0 http://cells.ucsc.edu/?ds=muscle-cell-atlas&gene=$$

    Description

    \

    \ This track displays data from A\ reference single-cell transcriptomic atlas of human skeletal muscle tissue\ reveals bifurcated muscle stem cell populations. Muscle tissue was\ analyzed using single-cell RNA-sequencing (scRNA-seq) and subsequent clustering\ distinguished 16 muscle-resident cell types based on their identified marker\ genes found in De Micheli et al., 2020. Muscle samples were from\ surgically discarded tissue taken from a wide variety of anatomical sites.

    \ \

    \ This track collection contains two bar chart tracks of RNA expression in the\ human muscle where cells are grouped by cell type \ (Muscle Cells) or biosample\ (Muscle Sample). \ The default track displayed is \ Muscle Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    stem cell
    adipose
    fibroblast
    immune
    muscle
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Muscle Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well. Note that the \ Muscle Sample subtrack is colored based on \ colors provided from Figure 1 from De Micheli et al., 2020.

    \ \ \ \

    Relevant Figures From De Micheli et al. 2020

    \ \

    \ Details on sex, age, anatomical site, and single-cell transcriptomes after\ quality control (QC) filtering from 10 donors. Colors represent areas from\ which samples were taken from.

    \ \

    \ \ Muscle Sample Donors\
    \ De Micheli et al. Skelet\ Muscle. 2020. / CC BY 4.0

    \ \
    \ \

    \ Cell type proportions across the 10 donors and grouped by leg (donors 02, 07,\ 08), trunk (donors 01, 05, 06, 09, 10), and face (donors 03, 04).

    \ \

    \ \ Cell Type Proportions\
    \ De Micheli et al. Skelet\ Muscle. 2020. / CC BY 4.0

    \ \ \

    Method

    \

    \ Muscle samples were taken from 10 healthy donors of ages ranging from 41-81\ years old from different sections of the face (F), trunk (T), and leg (L).\ Excessive fat and connective tissue were removed from the muscle samples prior\ to enzymatic dissociation. Next, libraries were prepared using the 10x Genomics\ 3' v2 or v3 library kit and sequenced on the Illumina NextSeq 500. This\ resulted in libraries with 200-250 million reads which were processed using Cell\ Ranger version 3.1. In total, over 22,000 RNA transcriptomic profiles were\ generated from all of the samples after quality control filtering. The single\ cell transcriptomes from all 10 datasets were integrated using a scRNA-seq\ integration method called Scanorama as described in the reference below.\ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Andrea De Micheli of the Cosgrove Laboratory at Cornell University\ and to the many authors who worked on producing and publishing this data set. The\ data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed Luis Nassar. The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ De Micheli AJ, Spector JA, Elemento O, Cosgrove BD.\ \ A reference single-cell transcriptomic atlas of human skeletal muscle tissue reveals bifurcated\ muscle stem cell populations.\ Skelet Muscle. 2020 Jul 6;10(1):19.\ PMID: 32624006; PMC: PMC7336639

    \ singleCell 1 barChartCategoryUrl /gbdb/hg38/bbi/muscleDeMicheli/sample.colors\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/muscleDeMicheli/sample.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/muscleDeMicheli/sample.bb\ defaultLabelFields name\ html muscleDeMicheli\ labelFields name,name2\ longLabel Muscle RNA binned by biosample from De Micheli et al 2020\ parent muscleDeMicheli\ shortLabel Muscle Sample\ track muscleDeMicheliSample\ transformFunc NONE\ type bigBarChart\ url http://cells.ucsc.edu/?ds=muscle-cell-atlas&gene=$$\ urlLabel UCSC Cell Browser:\ visibility hide\ hprcChainNetViewnet Nets bed 3 Human Genomes, Chain/Net pairwise alignments, as mapped by the HPRC project 1 100 0 0 0 255 255 0 0 0 0 hprc 1 longLabel Human Genomes, Chain/Net pairwise alignments, as mapped by the HPRC project\ parent hprcChainNet\ shortLabel Nets\ track hprcChainNetViewnet\ view net\ visibility dense\ nonCodingRNAs Non-coding RNA RNA sequences that do not code for a protein 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This is a super track for non-coding RNA data, subtracks represent some form of non-coding RNA data. \

    \

    Credits

    \ \

    The body map RNA-Seq data was kindly provided by the Gene Expression\ Applications research group at Illumina.

    \ \ Genome coordinates for the sno/miRNA track were obtained from the miRBase sequences\ FTP site and from \ \ snoRNABase coordinates download page.\

    \ \

    References

    \ \

    \ When making use of these data, please cite the folowing articles in addition to\ the primary sources of the miRNA sequences:

    \

    \ Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ.\ miRBase: tools for microRNA genomics.\ Nucleic Acids Res. 2008 Jan 1;36(Database issue):D154-8.

    \

    \ Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ.\ miRBase: microRNA sequences, targets and gene nomenclature.\ Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4.

    \

    \ Griffiths-Jones S.\ The microRNA Registry.\ Nucleic Acids Res. 2004 Jan 1;32(Database issue):D109-11.

    \

    \ Weber MJ.\ New human and mouse microRNA genes found by homology search.\

    \ You may also want to cite The Wellcome Trust Sanger Institute \ miRBase and The Laboratoire de Biologie Moleculaire \ Eucaryote snoRNABase.

    \

    \ The following publication provides guidelines on miRNA annotation:\ Ambros V. et al., \ A uniform system for microRNA annotation. \ RNA. 2003;9(3):277-9.

    \

    \ \ \

    \ Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL.\ \ Integrative annotation of human large intergenic noncoding RNAs reveals global properties and\ specific subclasses.\ Genes Dev. 2011 Sep 15;25(18):1915-27.\ PMID: 21890647; PMC: PMC3185964\

    \ \

    \ Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter\ L.\ \ Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform\ switching during cell differentiation.\ Nat Biotechnol. 2010 May;28(5):511-5.\ PMID: 20436464; PMC: PMC3146043\

    \ \ \ genes 0 group genes\ longLabel RNA sequences that do not code for a protein\ shortLabel Non-coding RNA\ superTrack on\ track nonCodingRNAs\ knownGeneOld12 Old UCSC Genes genePred Previous Version of UCSC Genes 0 100 82 82 160 168 168 207 0 0 0

    Description

    \

    \ The Old UCSC Genes track shows genes from the previous version of\ the UCSC Genes build, which was built with GENCODE v32 models.\ See the description page\ for more information on how the new GENCODE v36 track was built.\

    \

    \ The new release has 232,184 total transcripts, compared with 247,541 in the previous version. The\ total number of canonical genes has decreased from 66,622 to 60,675 . Comparing the new gene set with\ the previous version:

    \
      \
    • \ 221,698 transcripts did not change.
      • \
    • \ 20,017 transcripts were not carried forward to the new version.
      • \
    • \ 4,860 transcripts are "compatible" with those in the previous set, meaning that the two\ transcripts show consistent splicing. In most cases, the old and new transcripts differ in the\ lengths of their UTRs.
      • \
    • \ 966 transcripts overlap with those in the previous set, but do not show consistent splicing\ (i.e., they contain overlapping introns with differing splice sites)
      • \
    \

    \ genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 82,82,160\ group genes\ hgsid on\ longLabel Previous Version of UCSC Genes\ oldToNew kg12ToKg13\ shortLabel Old UCSC Genes\ track knownGeneOld12\ type genePred\ visibility hide\ omimLocation OMIM Cyto Loci bed 4 OMIM Cytogenetic Loci Phenotypes - Gene Unknown 0 100 0 80 0 127 167 127 0 0 0 http://www.omim.org/entry/

    Description

    \ \
    \

    NOTE:
    \ OMIM is intended for use primarily by physicians and other\ professionals concerned with genetic disorders, by genetics researchers, and\ by advanced students in science and medicine. While the OMIM database is\ open to the public, users seeking information about a personal medical or\ genetic condition are urged to consult with a qualified physician for\ diagnosis and for answers to personal questions. Further, please be\ sure to click through to omim.org for the very latest, as they are continually \ updating data.

    \ \

    NOTE ABOUT DOWNLOADS:
    \ OMIM is the property \ of Johns Hopkins University and is not available for download or mirroring \ by any third party without their permission. Please see \ OMIM\ for downloads.

    \
    \ \ \

    OMIM is a compendium of human genes and genetic phenotypes. The full-text,\ referenced overviews in OMIM contain information on all known Mendelian\ disorders and over 12,000 genes. OMIM is authored and edited at the\ McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University\ School of Medicine, under the direction of Dr. Ada Hamosh. This database\ was initiated in the early 1960s by Dr. Victor A. McKusick as a catalog\ of Mendelian traits and disorders, entitled Mendelian Inheritance\ in Man (MIM).\

    \ \

    \ The OMIM data are separated into three separate tracks:\

    \ \

    OMIM Alleles \
        Variants in the OMIM database that have associated \ dbSNP identifiers. This track is currently unavailable on the hg38 assembly,\ as it depends on dbSNP data that has not been released yet.\ \

    OMIM Genes\
        The genomic positions of gene entries in the OMIM \ database. The coloring indicates the associated OMIM phenotype map key.\

    \ \

    OMIM Phenotypes - Gene Unknown\
        Regions known to be associated with a phenotype, \ but for which no specific gene is known to be causative. This track \ also includes known multi-gene syndromes.\

    \ \
    \ \ \

    \ This track shows the cytogenetic locations of phenotype entries in the Online Mendelian\ Inheritance in Man (OMIM) database for which\ the gene is unknown.\

    \ \

    Display Conventions and Configuration

    \ \

    Cytogenetic locations of OMIM entries are displayed as solid\ blocks. The entries are colored according to the OMIM phenotype map key of associated disorders:\ \

      \
    • Lighter Green for phenotype map key 1 OMIM records\ - the disorder has been placed on the map based on its association with\ a gene, but the underlying defect is not known.\
    • Light Green for phenotype map key 2 OMIM records\ - the disorder has been placed on the map by linkage; no mutation has\ been found.\
    • Dark Green for phenotype map key 3 OMIM records\ - the molecular basis for the disorder is known; a mutation has been\ found in the gene.\
    • Purple for phenotype map key 4 OMIM records\ - a contiguous gene deletion or duplication syndrome; multiple genes\ are deleted or duplicated causing the phenotype.\
    \

    Gene symbols and disease information, when available, are displayed on the details pages.\

    \

    The descriptions of OMIM entries are shown on the main browser display when Full display\ mode is chosen. In Pack mode, the descriptions are shown when mousing over each entry. Items\ displayed can be filtered according to phenotype map key on the track controls page.\

    \ \

    Methods

    \

    \ This track was constructed as follows: \

      \
    • The data file genemap.txt from OMIM was loaded into the MySQL table\ omimGeneMap.\
    • Entries in genemap.txt having disorder info were parsed and loaded into the\ omimPhenotype table. The phenotype map keys (the numbers (1)(2)(3)(4) from the\ disorder columns) were placed into a separate field.\
    • The cytogenetic location data (from the location column in omimGeneMap) were\ parsed and converted into genomic start and end positions based on the cytoBand table.\ These genomic positions, together with the corresponding OMIM IDs, were loaded into the\ omimLocation table.\
    • All entries with no associated phenotype map key and all OMIM gene entries as reported in the\ "OMIM Genes" track were then excluded from the omimLocation table.\
    \ \

    Data Access

    \

    \ Because OMIM has only allowed Data queries within individual chromosomes, no download files are\ available from the Genome Browser. Full genome datasets can be downloaded directly from the\ OMIM Downloads page.\ All genome-wide downloads are freely available from OMIM after registration.

    \

    \ If you need the OMIM data in exactly the format of the UCSC Genome Browser,\ for example if you are running a UCSC Genome Browser local installation (a partial "mirror"),\ please create a user account on omim.org and contact OMIM via\ https://omim.org/contact. Send them your OMIM\ account name and request access to the UCSC Genome Browser 'entitlement'. They will\ then grant you access to a MySQL/MariaDB data dump that contains all UCSC\ Genome Browser OMIM tables.

    \

    \ UCSC offers queries within chromosomes from\ Table Browser that include a variety\ of filtering options and cross-referencing other datasets using our\ Data Integrator tool.\ UCSC also has an API\ that can be used to retrieve data in JSON format from a particular chromosome range.

    \

    \ Please refer to our searchable\ mailing list archives\ for more questions and example queries, or our\ Data Access FAQ\ for more information.

    \ \

    Credits

    \

    \ Thanks to OMIM and NCBI for the use of their data. This track was constructed by Fan Hsu,\ Robert Kuhn, and Brooke Rhead of the UCSC Genome Bioinformatics Group.

    \ \

    References

    \

    Amberger J, Bocchini CA, Scott AF, Hamosh A.\ McKusick's Online Mendelian Inheritance in Man (OMIM®).\ Nucleic Acids Res. 2009 Jan;37(Database issue):D793-6. Epub 2008 Oct 8.\

    \

    \ Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA.\ Online Mendelian Inheritance in Man (OMIM), a knowledgebase of\ human genes and genetic disorders.\ Nucleic Acids Res. 2005 Jan 1;33(Database issue):D514-7.\

    \ phenDis 1 color 0, 80, 0\ group phenDis\ hgsid on\ longLabel OMIM Cytogenetic Loci Phenotypes - Gene Unknown\ noGenomeReason Distribution restrictions by OMIM. See the track documentation for details. You can download the complete OMIM dataset for free from omim.org\ shortLabel OMIM Cyto Loci\ tableBrowser noGenome\ track omimLocation\ type bed 4\ url http://www.omim.org/entry/\ visibility hide\ omimGene2 OMIM Genes bed 4 OMIM Gene Phenotypes - Dark Green Can Be Disease-causing 1 100 0 80 0 127 167 127 0 0 0 http://www.omim.org/entry/

    Description

    \ \
    \

    NOTE:
    \ OMIM is intended for use primarily by physicians and other\ professionals concerned with genetic disorders, by genetics researchers, and\ by advanced students in science and medicine. While the OMIM database is\ open to the public, users seeking information about a personal medical or\ genetic condition are urged to consult with a qualified physician for\ diagnosis and for answers to personal questions. Further, please be\ sure to click through to omim.org for the very latest, as they are continually \ updating data.

    \ \

    NOTE ABOUT DOWNLOADS:
    \ OMIM is the property \ of Johns Hopkins University and is not available for download or mirroring \ by any third party without their permission. Please see \ OMIM\ for downloads.

    \
    \ \ \

    OMIM is a compendium of human genes and genetic phenotypes. The full-text,\ referenced overviews in OMIM contain information on all known Mendelian\ disorders and over 12,000 genes. OMIM is authored and edited at the\ McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University\ School of Medicine, under the direction of Dr. Ada Hamosh. This database\ was initiated in the early 1960s by Dr. Victor A. McKusick as a catalog\ of Mendelian traits and disorders, entitled Mendelian Inheritance\ in Man (MIM).\

    \ \

    \ The OMIM data are separated into three separate tracks:\

    \ \

    OMIM Alleles \
        Variants in the OMIM database that have associated \ dbSNP identifiers. This track is currently unavailable on the hg38 assembly,\ as it depends on dbSNP data that has not been released yet.\ \

    OMIM Genes\
        The genomic positions of gene entries in the OMIM \ database. The coloring indicates the associated OMIM phenotype map key.\

    \ \

    OMIM Phenotypes - Gene Unknown\
        Regions known to be associated with a phenotype, \ but for which no specific gene is known to be causative. This track \ also includes known multi-gene syndromes.\

    \ \
    \ \ \

    \ This track shows the genomic positions of all gene entries in the Online Mendelian\ Inheritance in Man (OMIM) database.\

    \ \

    Display Conventions and Configuration

    \ \

    Genomic locations of OMIM gene entries are displayed as solid blocks. The entries are colored\ according to the associated OMIM phenotype map key (if any):\

      \
    • Lighter Green for phenotype map key 1 OMIM records\ - the disorder has been placed on the map based on its association with\ a gene, but the underlying defect is not known.\
    • Light Green for phenotype map key 2 OMIM records\ - the disorder has been placed on the map by linkage; no mutation has\ been found.\
    • Dark Green for phenotype map key 3 OMIM records\ - the molecular basis for the disorder is known; a mutation has been\ found in the gene.\
    • Purple for phenotype map key 4 OMIM records\ - a contiguous gene deletion or duplication syndrome; multiple genes\ are deleted or duplicated causing the phenotype.\
    • Light Gray for Others\ - no associated OMIM phenotype map key info available.\
    \

    Gene symbol and disease information, when available, are displayed on the details page for an\ item, and links to related RefSeq Genes and UCSC Genes are given.\

    \

    The descriptions of the OMIM entries are shown on the main browser display when Full display\ mode is chosen. In Pack mode, the descriptions are shown when mousing over each entry. Items\ displayed can be filtered according to phenotype map key on the track controls page. \

    \ \

    Methods

    \

    \ The mappings displayed in this track are based on OMIM gene entries, their Entrez Gene IDs, and\ the corresponding RefSeq Gene locations:\

      \
    • The data file genemap.txt from OMIM was loaded into the MySQL table omimGeneMap.\
    • The data file mim2gene.txt from OMIM was processed and loaded into the MySQL table omim2gene.\
    • Entries in genemap.txt having disorder info were parsed and loaded into the \ omimPhenotype table.\
    • For each OMIM gene in the omim2gene table, the\ Entrez Gene ID was used to get the\ corresponding RefSeq Gene ID via\ the ncbiRefLink table, and the RefSeq ID was used to get the genomic location from the\ ncbiRefSeq table. The OMIM gene IDs and corresponding RefSeq Gene locations were loaded into\ the omimGene2 table, the primary table for this track.\

      \
    \ \

    Data Access

    \

    \ Because OMIM has only allowed Data queries within individual chromosomes, no download files are\ available from the Genome Browser. Full genome datasets can be downloaded directly from the\ OMIM Downloads page.\ All genome-wide downloads are freely available from OMIM after registration.

    \

    \ If you need the OMIM data in exactly the format of the UCSC Genome Browser,\ for example if you are running a UCSC Genome Browser local installation (a partial "mirror"),\ please create a user account on omim.org and contact OMIM via\ https://omim.org/contact. Send them your OMIM\ account name and request access to the UCSC Genome Browser "entitlement". They will\ then grant you access to a MySQL/MariaDB data dump that contains all UCSC\ Genome Browser OMIM tables.

    \

    \ UCSC offers queries within chromosomes from\ Table Browser that include a variety\ of filtering options and cross-referencing other datasets using our\ Data Integrator tool.\ UCSC also has an API\ that can be used to retrieve data in JSON format from a particular chromosome range.

    \

    \ Please refer to our searchable\ mailing list archives\ for more questions and example queries, or our\ Data Access FAQ\ for more information.

    \ \

    Example: Retrieve phenotype, Mode of Inheritance, and other OMIM data within a range

    \
      \
    1. Go to Table Browser, make sure the right dataset is selected:\ group: Phenotype and Literature, track: OMIM Genes, table: omimGene2.
      2. \
    2. Define region of interest by entering coordinates or a gene symbol into the "Position" textbox, such as\ chr1:11,106,535-11,262,551 or MTOR, or upload a list.
      3. \
    3. Format your data by setting the "Output format" dropdown to "selected fields from primary\ and related Tables" and click . This \ brings up the data field and linked table selection page.
      4. \
    4. Select chrom, chromStart, chromEnd, and name from omimGene2 table. Then select the related tables omim2gene\ and omimPhenotype and click .\ This brings up the fields of the linked tables, where you can select approvedGeneSymbol,\ omimID, description, omimPhenotypeMapKey, and inhMode.
      5. \
    5. Click on the to proceed to the results page:\ 
      chr1\	11106534\	11262551\	MTOR\	601231,\	Smith-Kingsmore syndrome,Focal cortical dysplasia, type II, somatic,\	3,\	Autosomal dominant
    \

    For a quick link to pre-fill these options, click \ \ this session link.\ \

    \ \

    Credits

    \

    \ Thanks to OMIM and NCBI for the use of their data. This track was\ constructed by Fan Hsu, Robert Kuhn, and Brooke Rhead of the UCSC Genome Bioinformatics Group.

    \ \

    References

    \

    Amberger J, Bocchini CA, Scott AF, Hamosh A. \ McKusick's Online Mendelian Inheritance in Man (OMIM®). \ Nucleic Acids Res. 2009 Jan;37(Database issue):D793-6. Epub 2008 Oct 8.\

    \

    \ Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA. \ Online Mendelian Inheritance in Man (OMIM), a knowledgebase of \ human genes and genetic disorders. \ Nucleic Acids Res. 2005 Jan 1;33(Database issue):D514-7.\

    \ phenDis 1 color 0, 80, 0\ group phenDis\ hgsid on\ longLabel OMIM Gene Phenotypes - Dark Green Can Be Disease-causing\ noGenomeReason Distribution restrictions by OMIM. See the track documentation for details. You can download the complete OMIM dataset for free from omim.org\ shortLabel OMIM Genes\ tableBrowser noGenome omimGeneMap omimGeneMap2 omimPhenotype omimGeneSymbol omim2gene\ track omimGene2\ type bed 4\ url http://www.omim.org/entry/\ visibility dense\ oreganno ORegAnno bed 4 + Regulatory elements from ORegAnno 0 100 102 102 0 178 178 127 0 0 0

    Description

    \

    \ This track displays literature-curated regulatory regions, transcription\ factor binding sites, and regulatory polymorphisms from\ ORegAnno (Open Regulatory Annotation). For more detailed\ information on a particular regulatory element, follow the link to ORegAnno\ from the details page. \ \

    \ \

    Display Conventions and Configuration

    \ \

    The display may be filtered to show only selected region types, such as:

    \ \
      \
    • regulatory regions (shown in light blue)
      • \
    • regulatory polymorphisms (shown in dark blue)
      • \
    • transcription factor binding sites (shown in orange)
      • \
    • regulatory haplotypes (shown in red)
      • \
    • miRNA binding sites (shown in blue-green)
      • \
    \ \

    To exclude a region type, uncheck the appropriate box in the list at the top of \ the Track Settings page.

    \ \

    Methods

    \

    \ An ORegAnno record describes an experimentally proven and published regulatory\ region (promoter, enhancer, etc.), transcription factor binding site, or\ regulatory polymorphism. Each annotation must have the following attributes:\

      \
    • A stable ORegAnno identifier.\
    • A valid taxonomy ID from the NCBI taxonomy database.\
    • A valid PubMed reference. \
    • A target gene that is either user-defined, in Entrez Gene or in EnsEMBL.\
    • A sequence with at least 40 flanking bases (preferably more) to allow the\ site to be mapped to any release of an associated genome.\
    • At least one piece of specific experimental evidence, including the\ biological technique used to discover the regulatory sequence. (Currently\ only the evidence subtypes are supplied with the UCSC track.)\
    • A positive, neutral or negative outcome based on the experimental results\ from the primary reference. (Only records with a positive outcome are currently\ included in the UCSC track.)\
    \ The following attributes are optionally included:\
      \
    • A transcription factor that is either user-defined, in Entrez Gene\ or in EnsEMBL.\
    • A specific cell type for each piece of experimental evidence, using the\ eVOC cell type ontology.\
    • A specific dataset identifier (e.g. the REDfly dataset) that allows\ external curators to manage particular annotation sets using ORegAnno's\ curation tools.\
    • A "search space" sequence that specifies the region that was\ assayed, not just the regulatory sequence. \
    • A dbSNP identifier and type of variant (germline, somatic or artificial)\ for regulatory polymorphisms.\
    \ Mapping to genome coordinates is performed periodically to current genome\ builds by BLAST sequence alignment. \ The information provided in this track represents an abbreviated summary of the \ details for each ORegAnno record. Please visit the official ORegAnno entry\ (by clicking on the ORegAnno link on the details page of a specific regulatory\ element) for complete details such as evidence descriptions, comments,\ validation score history, etc.\

    \ \

    Credits

    \

    \ ORegAnno core team and principal contacts: Stephen Montgomery, Obi Griffith, \ and Steven Jones from Canada's Michael Smith Genome Sciences Centre, Vancouver, \ British Columbia, Canada.

    \

    \ The ORegAnno community (please see individual citations for various\ features): ORegAnno Citation.\ \

    References

    \

    \ Lesurf R, Cotto KC, Wang G, Griffith M, Kasaian K, Jones SJ, Montgomery SB, Griffith OL, Open\ Regulatory Annotation Consortium..\ \ ORegAnno 3.0: a community-driven resource for curated regulatory annotation.\ Nucleic Acids Res. 2016 Jan 4;44(D1):D126-32.\ PMID: 26578589; PMC: PMC4702855\

    \ \

    \ Griffith OL, Montgomery SB, Bernier B, Chu B, Kasaian K, Aerts S, Mahony S, Sleumer MC, Bilenky M,\ Haeussler M et al.\ \ ORegAnno: an open-access community-driven resource for regulatory annotation.\ Nucleic Acids Res. 2008 Jan;36(Database issue):D107-13.\ PMID: 18006570; PMC: PMC2239002\

    \ \

    \ Montgomery SB, Griffith OL, Sleumer MC, Bergman CM, Bilenky M, Pleasance ED, \ Prychyna Y, Zhang X, Jones SJ. \ ORegAnno: an open access database and curation system for \ literature-derived promoters, transcription factor binding sites and regulatory variation.\ Bioinformatics. 2006 Mar 1;22(5):637-40.\ PMID: 16397004\

    \ \ regulation 1 color 102,102,0\ group regulation\ longLabel Regulatory elements from ORegAnno\ shortLabel ORegAnno\ track oreganno\ type bed 4 +\ visibility hide\ orfeomeMrna ORFeome Clones psl ORFeome Collaboration Gene Clones 3 100 34 139 34 144 197 144 0 0 0

    Description

    \ \

    \ This track show alignments of human clones from the\ \ ORFeome Collaboration. The goal of the project is to be an\ "unrestricted source of fully sequence-validated full-ORF human cDNA\ clones in a format allowing easy transfer of the ORF sequences into\ virtually any type of expression vector. A major goal is to provide\ at least one fully-sequenced full-ORF clone for each human, mouse, and zebrafish gene.\ This track is updated automatically as new clones become available.\

    \ \

    Display Conventions and Configuration

    \ \

    \ The track follows the display conventions for\ gene prediction\ tracks.

    \ \

    Methods

    \ \

    \ ORFeome human clones were obtained from GenBank and aligned against the\ genome using the blat program. When a single clone aligned in multiple\ places, the alignment having the highest base identity was found. Only alignments\ having a base identity level within 0.5% of the best and at least 96% base\ identity with the genomic sequence were kept.\

    \ \

    Credits and References

    \ \

    \ Visit the ORFeome Collaboration\ \ members page for a list of credits and references.\

    \ genes 1 baseColorDefault diffCodons\ baseColorUseCds genbank\ baseColorUseSequence genbank\ color 34,139,34\ group genes\ indelDoubleInsert on\ indelQueryInsert on\ longLabel ORFeome Collaboration Gene Clones\ parent mgcOrfeomeMrna\ shortLabel ORFeome Clones\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ track orfeomeMrna\ type psl\ visibility pack\ orphadata Orphanet bigBed 9 + Orphadata: Aggregated Data From Orphanet 0 100 0 0 0 127 127 127 0 0 0 http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=en&Expert=$$

    Description

    \ \ \
    \

    \ NOTE:\
    These data are for research purposes only. While the Orphadata data is open to the public, \ users seeking information about a personal medical or genetic condition are urged to consult with \ a qualified physician for diagnosis and for answers to personal medical questions.

    \ \

    UCSC presents these data for use by qualified professionals, and even such professionals \ should use caution in interpreting the significance of information found here. No single data point\ should be taken at face value and such data should always be used in conjunction with as much \ corroborating data as possible. No treatment protocols should be developed or patient advice given \ on the basis of these data without careful consideration of all possible sources of information.

    \ \

    No attempt to identify individual patients should be undertaken. No one is authorized to \ attempt to identify patients by any means.

    \
    \
    \ \

    \ The Orphadata: Aggregated data from Orphanet (Orphanet) track shows genomic positions \ of genes and their association to human disorders, related epidemiological data, and phenotypic\ annotations. As a consortium of 40 countries throughout the world, \ Orphanet\ gathers and improves knowledge regarding rare diseases and maintains the Orphanet rare disease \ nomenclature (ORPHAcode), essential in improving the visibility of rare diseases in health and\ research information systems. The data is updated monthly by Orphanet and updated monthly \ on the UCSC Genome Browser.\

    \ \

    Display Conventions

    \

    Mouseover on items shows the gene name, disorder name, modes of inheritance(s) (if available), \ and age(s) of onset (if available). Tracks can be filtered according to gene-disorder association \ types, modes of inheritance, and ages of onset. Clicking an item from the browser will return \ the complete entry, including gene linkouts to Ensembl, OMIM, and HGNC, as well as phenotype information \ using HPO (human phenotype ontology) terms.\ \ For more information on the use of this data, see \ the Orphadata FAQs.

    \ \

    Data Access

    \

    The raw data can be explored interactively with the Table Browser, \ or the Data Integrator. \ For automated analysis, the data may be queried from our REST API. \ Please refer to our mailing list archives \ for questions, or our Data Access FAQ \ for more information.\ \

    Data is also freely available through \ Orphadata datasets.

    \ \

    Methods

    \

    Orphadata files were reformatted at UCSC to the \ bigBed format.

    \ \

    Credits

    \

    Thank you to the Orphanet and Orphadata team and to Tiana Pereira, Christopher Lee, \ Daniel Schmelter, and Anna Benet-Pages of the Genome Browser team.

    \ \

    References

    \

    \ Pavan S, Rommel K, Mateo Marquina ME, Höhn S, Lanneau V, Rath A.\ \ Clinical Practice Guidelines for Rare Diseases: The Orphanet Database.\ PLoS One. 2017;12(1):e0170365.\ PMID: 28099516; PMC: PMC5242437\

    \ \

    \ Nguengang Wakap S, Lambert DM, Olry A, Rodwell C, Gueydan C, Lanneau V, Murphy D, Le Cam Y, Rath A.\ \ Estimating cumulative point prevalence of rare diseases: analysis of the Orphanet database.\ Eur J Hum Genet. 2020 Feb;28(2):165-173.\ PMID: 31527858; PMC: PMC6974615\

    \ phenDis 1 bedNameLabel OrphaCode\ bigDataUrl /gbdb/hg38/bbi/orphanet/orphadata.bb\ filterValues.assnType Biomarker tested in,Candidate gene tested in,Disease-causing germline mutation(s) (gain of function) in,Disease-causing germline mutation(s) (loss of function) in,Disease-causing germline mutation(s) in,Disease-causing somatic mutation(s) in,Major susceptibility factor in,Modifying germline mutation in,Part of a fusion gene in,Role in the phenotype of\ filterValues.inheritance Autosomal dominant,Autosomal recessive,Mitochondrial inheritance,Multigenic/multifactorial,No data available,Not applicable,Oligogenic,Semi-dominant,Unknown,X-linked dominant,X-linked recessive,Y-linked\ filterValues.onsetList Adolescent,Adult,All ages,Antenatal,Childhood,Elderly,Infancy,Neonatal,No data available\ group phenDis\ itemRgb on\ longLabel Orphadata: Aggregated Data From Orphanet\ mouseOver Gene: $geneSymbol, Disorder: $disorder, Inheritance(s): $inheritance, Onset: $onsetList\ shortLabel Orphanet\ skipEmptyFields on\ skipFields name,score,itemRgb\ track orphadata\ type bigBed 9 +\ url http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=en&Expert=$$\ urlLabel OrphaNet Phenotype Link:\ urls ensemblID="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" pmid="https://pubmed.ncbi.nlm.nih.gov/$$" orphaCode="http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=en&Expert=$$" omim="https://www.omim.org/entry/$$?search=$$&highlight=$$" hgnc="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$"\ xenoEst Other ESTs psl xeno Non-Human ESTs from GenBank 0 100 0 0 0 127 127 127 1 0 0 https://www.ncbi.nlm.nih.gov/htbin-post/Entrez/query?form=4&db=n&term=$$

    Description

    \

    \ This track displays translated blat alignments of expressed sequence tags \ (ESTs) in GenBank from organisms other than human.\ ESTs are single-read sequences, typically about 500 bases in length, that \ usually represent fragments of transcribed genes.

    \ \

    Display Conventions and Configuration

    \

    \ This track follows the display conventions for \ PSL alignment tracks. In dense display mode, the items that\ are more darkly shaded indicate matches of better quality.

    \

    \ The strand information (+/-) for this track is in two parts. The\ first + or - indicates the orientation of the query sequence whose\ translated protein produced the match. The second + or - indicates the\ orientation of the matching translated genomic sequence. Because the two\ orientations of a DNA sequence give different predicted protein sequences,\ there are four combinations. ++ is not the same as --, nor is +- the same\ as -+.

    \

    \ The description page for this track has a filter that can be used to change \ the display mode, alter the color, and include/exclude a subset of items \ within the track. This may be helpful when many items are shown in the track \ display, especially when only some are relevant to the current task.

    \

    \ To use the filter:\

      \
    1. Type a term in one or more of the text boxes to filter the EST\ display. For example, to apply the filter to all ESTs expressed in a specific\ organ, type the name of the organ in the tissue box. To view the list of \ valid terms for each text box, consult the table in the Table Browser that \ corresponds to the factor on which you wish to filter. For example, the \ "tissue" table contains all the types of tissues that can be \ entered into the tissue text box. Multiple terms may be entered at once, \ separated by a space. Wildcards may also be used in the\ filter.\
    2. If filtering on more than one value, choose the desired combination\ logic. If "and" is selected, only ESTs that match all filter \ criteria will be highlighted. If "or" is selected, ESTs that \ match any one of the filter criteria will be highlighted.\
    3. Choose the color or display characteristic that should be used to \ highlight or include/exclude the filtered items. If "exclude" is \ chosen, the browser will not display ESTs that match the filter criteria. \ If "include" is selected, the browser will display only those \ ESTs that match the filter criteria.\

    \ \

    \ This track may also be configured to display base labeling, a feature that\ allows the user to display all bases in the aligning sequence or only those\ that differ from the genomic sequence. For more information about this option,\ go to the\ \ Base Coloring for Alignment Tracks page.\ Several types of alignment gap may also be colored;\ for more information, go to the\ \ Alignment Insertion/Deletion Display Options page.\

    \ \

    Methods

    \

    \ To generate this track, the ESTs were aligned against the genome using \ blat. When a single EST aligned in multiple places, the \ alignment having the highest base identity was found. Only alignments \ having a base identity level within 0.5% of the best and at least 96% base \ identity with the genomic sequence were kept.

    \ \

    Credits

    \

    \ This track was produced at UCSC from EST sequence data submitted to the \ international public sequence databases by scientists worldwide.

    \ \

    References

    \

    \ Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW.\ \ GenBank.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42.\ PMID: 23193287; PMC: PMC3531190\

    \ \

    \ Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.\ GenBank: update.\ Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6.\ PMID: 14681350; PMC: PMC308779\

    \ \

    \ Kent WJ.\ BLAT - the BLAST-like alignment tool.\ Genome Res. 2002 Apr;12(4):656-64.\ PMID: 11932250; PMC: PMC187518\

    \ rna 1 baseColorUseSequence genbank\ group rna\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Non-Human ESTs from GenBank\ shortLabel Other ESTs\ spectrum on\ track xenoEst\ type psl xeno\ url https://www.ncbi.nlm.nih.gov/htbin-post/Entrez/query?form=4&db=n&term=$$\ visibility hide\ xenoMrna Other mRNAs psl xeno Non-Human mRNAs from GenBank 0 100 0 0 0 127 127 127 1 0 0

    Description

    \ \

    \ This track displays translated blat alignments of vertebrate and\ invertebrate mRNA in\ \ GenBank from organisms other than human.\

    \ \

    Display Conventions and Configuration

    \ \

    \ This track follows the display conventions for\ \ PSL alignment tracks. In dense display mode, the items that\ are more darkly shaded indicate matches of better quality.\

    \ \

    \ The strand information (+/-) for this track is in two parts. The\ first + indicates the orientation of the query sequence whose\ translated protein produced the match (here always 5' to 3', hence +).\ The second + or - indicates the orientation of the matching\ translated genomic sequence. Because the two orientations of a DNA\ sequence give different predicted protein sequences, there are four\ combinations. ++ is not the same as --, nor is +- the same as -+.\

    \ \

    \ The description page for this track has a filter that can be used to change\ the display mode, alter the color, and include/exclude a subset of items\ within the track. This may be helpful when many items are shown in the track\ display, especially when only some are relevant to the current task.\

    \ \

    \ To use the filter:\

      \
    1. Type a term in one or more of the text boxes to filter the mRNA\ display. For example, to apply the filter to all mRNAs expressed in a specific\ organ, type the name of the organ in the tissue box. To view the list of\ valid terms for each text box, consult the table in the Table Browser that\ corresponds to the factor on which you wish to filter. For example, the\ "tissue" table contains all the types of tissues that can be\ entered into the tissue text box. Multiple terms may be entered at once,\ separated by a space. Wildcards may also be used in the filter.
      2. \
    2. If filtering on more than one value, choose the desired combination\ logic. If "and" is selected, only mRNAs that match all filter\ criteria will be highlighted. If "or" is selected, mRNAs that\ match any one of the filter criteria will be highlighted.
      3. \
    3. Choose the color or display characteristic that should be used to\ highlight or include/exclude the filtered items. If "exclude" is\ chosen, the browser will not display mRNAs that match the filter criteria.\ If "include" is selected, the browser will display only those\ mRNAs that match the filter criteria.
      4. \
    \

    \ \

    \ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare mRNAs against the genomic sequence. For more\ information about this option, go to the\ \ Codon and Base Coloring for Alignment Tracks page.\ Several types of alignment gap may also be colored;\ for more information, go to the\ \ Alignment Insertion/Deletion Display Options page.\

    \ \

    Methods

    \ \

    \ The mRNAs were aligned against the human genome using translated blat.\ When a single mRNA aligned in multiple places, the alignment having the\ highest base identity was found. Only those alignments having a base\ identity level within 1% of the best and at least 25% base identity with the\ genomic sequence were kept.\

    \ \

    Credits

    \ \

    \ The mRNA track was produced at UCSC from mRNA sequence data\ submitted to the international public sequence databases by\ scientists worldwide.\

    \ \

    References

    \

    \ Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW.\ \ GenBank.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42.\ PMID: 23193287; PMC: PMC3531190\

    \ \

    \ Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.\ GenBank: update.\ Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6.\ PMID: 14681350; PMC: PMC308779\

    \ \

    \ Kent WJ.\ BLAT - the BLAST-like alignment tool.\ Genome Res. 2002 Apr;12(4):656-64.\ PMID: 11932250; PMC: PMC187518\

    \ rna 1 baseColorUseCds genbank\ baseColorUseSequence genbank\ group rna\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Non-Human mRNAs from GenBank\ shortLabel Other mRNAs\ showDiffBasesAllScales .\ spectrum on\ track xenoMrna\ type psl xeno\ visibility hide\ xenoRefGene Other RefSeq genePred xenoRefPep xenoRefMrna Non-Human RefSeq Genes 0 100 12 12 120 133 133 187 0 0 0

    Description

    \

    \ This track shows known protein-coding and non-protein-coding genes \ for organisms other than human, taken from the NCBI RNA reference \ sequences collection (RefSeq). The data underlying this track are \ updated weekly.

    \ \

    Display Conventions and Configuration

    \

    \ This track follows the display conventions for \ gene prediction \ tracks.\ The color shading indicates the level of review the RefSeq record has \ undergone: predicted (light), provisional (medium), reviewed (dark).

    \

    \ The item labels and display colors of features within this track can be\ configured through the controls at the top of the track description page. \

      \
    • Label: By default, items are labeled by gene name. Click the \ appropriate Label option to display the accession name instead of the gene\ name, show both the gene and accession names, or turn off the label \ completely.\
    • Codon coloring: This track contains an optional codon coloring \ feature that allows users to quickly validate and compare gene predictions.\ To display codon colors, select the genomic codons option from the\ Color track by codons pull-down menu. For more information about\ this feature, go to the\ \ Coloring Gene Predictions and Annotations by Codon page.\
    • Hide non-coding genes: By default, both the protein-coding and\ non-protein-coding genes are displayed. If you wish to see only the coding\ genes, click this box.\

    \ \

    Methods

    \

    \ The RNAs were aligned against the human genome using blat; those\ with an alignment of less than 15% were discarded. When a single RNA aligned \ in multiple places, the alignment having the highest base identity was \ identified. Only alignments having a base identity level within 0.5% of \ the best and at least 25% base identity with the genomic sequence were kept.\

    \ \

    Credits

    \

    \ This track was produced at UCSC from RNA sequence data\ generated by scientists worldwide and curated by the \ NCBI RefSeq project.

    \ \

    References

    \

    \ Kent WJ.\ \ BLAT--the BLAST-like alignment tool.\ Genome Res. 2002 Apr;12(4):656-64.\ PMID: 11932250; PMC: PMC187518\

    \ \

    \ Pruitt KD, Brown GR, Hiatt SM, Thibaud-Nissen F, Astashyn A, Ermolaeva O, Farrell CM, Hart J,\ Landrum MJ, McGarvey KM et al.\ \ RefSeq: an update on mammalian reference sequences.\ Nucleic Acids Res. 2014 Jan;42(Database issue):D756-63.\ PMID: 24259432; PMC: PMC3965018\

    \ \

    \ Pruitt KD, Tatusova T, Maglott DR.\ \ NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.\ Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.\ PMID: 15608248; PMC: PMC539979\

    \ genes 1 color 12,12,120\ group genes\ longLabel Non-Human RefSeq Genes\ shortLabel Other RefSeq\ track xenoRefGene\ type genePred xenoRefPep xenoRefMrna\ visibility hide\ hprcChainNet Pairwise Alignments bed 3 Human Genomes, Chain/Net pairwise alignments, as mapped by the HPRC project 0 100 0 0 0 255 255 0 0 0 0

    Description

    \

    \ This track shows regions of the human genome that are alignable to other Homo sapiens genomes.\ The alignable parts are shown with thick blocks that look like exons.\ Non-alignable parts between these are shown with thin lines like introns.\ More description on this display can be found below.\

    \ \

    \ Other assemblies included in this track are from the\ HPRC project.\

    \ \

    Display Conventions and Configuration

    \

    Chain Track

    \ \

    \ The chain track shows alignments of the human genome to other\ Homo sapiens genomes using a gap scoring system that allows longer gaps\ than traditional affine gap scoring systems. It can also tolerate gaps in both\ source and target assemblies simultaneously. These\ "double-sided" gaps can be caused by local inversions and\ overlapping deletions in both species.\

    \ The chain track displays boxes joined together by either single or\ double lines. The boxes represent aligning regions.\ Single lines indicate gaps that are largely due to a deletion in the\ query assembly or an insertion in the target assembly.\ assembly. Double lines represent more complex gaps that involve substantial\ sequence in both species. This may result from inversions, overlapping\ deletions, an abundance of local mutation, or an unsequenced gap in one\ species. In cases where multiple chains align over a particular region of\ the target genome, the chains with single-lined gaps are often\ due to processed pseudogenes, while chains with double-lined gaps are more\ often due to paralogs and unprocessed pseudogenes.

    \

    \ In the "pack" and "full" display\ modes, the individual feature names indicate the chromosome, strand, and\ location (in thousands) of the match for each matching alignment.

    \ \

    By default, the chains to chromosome-based assemblies are colored\ based on which chromosome they map to in the aligning organism. To turn\ off the coloring, check the "off" button next to: Color\ track based on chromosome.

    \

    \ To display only the chains of one chromosome in the aligning\ organism, enter the name of that chromosome (e.g. chr4) in box next to:\ Filter by chromosome.

    \ \

    Methods

    \

    \ The bigChain files were obtained from the\ HPRC S3 bucket (Amazon Web Services). For more\ information about how the bigChain files were generated, please refer to the HPRC publication below.\

    \ \

    Credits

    \

    \ Thank you to Glenn Hickey for providing the HAL file from the HPRC project.\

    \ \

    References

    \ \

    \ Liao WW, Asri M, Ebler J, Doerr D, Haukness M, Hickey G, Lu S, Lucas JK, Monlong J, Abel HJ et\ al.\ \ A draft human pangenome reference.\ Nature. 2023 May;617(7960):312-324.\ DOI: 10.1038/s41586-023-05896-x; PMID: 37165242; PMC: PMC10172123\

    \ \

    \ Hickey G, Monlong J, Ebler J, Novak AM, Eizenga JM, Gao Y, Human Pangenome Reference Consortium,\ Marschall T, Li H, Paten B.\ \ Pangenome graph construction from genome alignments with Minigraph-Cactus.\ Nat Biotechnol. 2023 May 10;.\ DOI: 10.1038/s41587-023-01793-w; PMID: 37165083; PMC: PMC10638906\

    \ \

    \ Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q, Xie D, Feng S, Stiller J\ et al.\ \ Progressive Cactus is a multiple-genome aligner for the thousand-genome era.\ Nature. 2020 Nov;587(7833):246-251.\ DOI: 10.1038/s41586-020-2871-y; PMID: 33177663; PMC: PMC7673649\

    \ \

    \ Paten B, Earl D, Nguyen N, Diekhans M, Zerbino D, Haussler D.\ \ Cactus: Algorithms for genome multiple sequence alignment.\ Genome Res. 2011 Sep;21(9):1512-28.\ DOI: 10.1101/gr.123356.111;\ PMID: 21665927; PMC: PMC3166836\

    \ hprc 1 altColor 255,255,0\ color 0,0,0\ compositeTrack on\ configurable on\ dimensions dimensionX=subpop dimensionY=sample\ dragAndDrop subTracks\ group hprc\ html hprcChains\ longLabel Human Genomes, Chain/Net pairwise alignments, as mapped by the HPRC project\ noInherit on\ shortLabel Pairwise Alignments\ sortOrder subpop=+ population=+ hap=+ sample=+\ subGroup1 view Views chain=Chains net=Nets\ subGroup2 sample Sample s001=HG02622.mat s002=HG02622.pat s003=HG02717.mat s004=HG02630.pat s005=HG02630.mat s006=HG02717.pat s007=HG02572.pat s008=HG02572.mat s009=HG02886.mat s010=HG02886.pat s011=HG03540.mat s012=HG03540.pat s013=HG02818.pat s014=HG02818.mat s015=HG02723.mat s016=HG02723.pat s017=HG02257.pat s018=HG02257.mat s019=HG02559.pat s020=HG02559.mat s021=HG02486.pat s022=HG02486.mat s023=HG01891.mat s024=HG01891.pat s025=HG02109.mat s026=HG02055.pat s027=HG02109.pat s028=HG02055.mat s029=HG02145.mat s030=HG02145.pat s031=HG03579.mat s032=HG03579.pat s033=HG03453.mat s034=HG03453.pat s035=HG03486.pat s036=HG03486.mat s037=HG03098.pat s038=HG03098.mat s039=NA18906.mat s040=NA18906.pat s041=NA20129.pat s042=NA20129.mat s043=HG03516.pat s044=HG03516.mat s045=HG01175.pat s046=HG01106.pat s047=HG01175.mat s048=HG00741.mat s049=HG00741.pat s050=HG01106.mat s051=HG01071.mat s052=HG00735.pat s053=HG01071.pat s054=HG00735.mat s055=HG01243.pat s056=HG01109.mat s057=HG01243.mat s058=HG01109.pat s059=HG00733.pat s060=HG00733.mat s061=HG02148.pat s062=HG02148.mat s063=HG01952.mat s064=HG01952.pat s065=HG01928.mat s066=HG01928.pat s067=HG01978.pat s068=HG01978.mat s069=HG01258.mat s070=HG01123.mat s071=HG01258.pat s072=HG01361.mat s073=HG01123.pat s074=HG01361.pat s075=HG01358.mat s076=HG01358.pat s077=HG00438.mat s078=HG00673.mat s079=HG00621.pat s080=HG00673.pat s081=HG00438.pat s082=HG00621.mat s083=HG02080.pat s084=HG02080.mat s085=NA21309.mat s086=NA21309.pat s087=T2T-CHM13v2.0 s088=HG03492.pat s089=HG03492.mat\ subGroup3 subpop Subpopulation gwd=Gambian acb=Afr_Carib_Barbados msl=Mende_Sierra_Leone yri=Yoruba_Nigeria asw=African_SW_USA esn=Esan_Nigeria pur=Puerto_Rico pel=Peru_Lima clm=Columbia_Medellin chs=Han_SoChina khv=Vietnam_Kinh pjl=Punjabo_Pakist hapmap=HAPMAP t2t=T2T\ subGroup4 population Population afr=African amr=American eas=East_Asian eur=European sas=South_Asian other=other\ subGroup5 hap Haplotype mat=maternal pat=paternal pri=primary\ track hprcChainNet\ type bed 3\ visibility hide\ pancreasBaron Pancreas Baron Pancreas single cell sequencing from Baron et al 2016 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track shows data from A Single-Cell Transcriptomic Map of the Human and Mouse\ Pancreas Reveals Inter- and Intra-cell Population Structure. Pancreas\ tissue was analyzed using droplet-based single-cell RNA-sequencing (scRNA-seq)\ and subsequent clustering distinguished 14 pancreas-resident cell types based\ on their identified marker genes found in Baron et al., 2016.

    \ \

    \ There are four bar chart tracks in this track collection with pancreas cells\ grouped by either batch (Pancreas Batch),\ cell type (Pancreas Cells), detailed\ cell type (Pancreas Details) and\ donor (Pancreas Donor). The default track\ displayed is pancreas cells grouped by cell type.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    secretory
    endothelial
    epithelial
    fibroblast
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the\ Pancreas Cells\ subtrack, where the bars represent relatively pure cell types. They can give an\ overview of the cell composition within other categories in other subtracks as\ well.

    \ \

    Method

    \

    \ Human islets were obtained from two female cadaveric donors ages 51 (human2)\ and 59 (human4) and two male cadaveric donors ages 17 (human1) and 38 (human3).\ The samples collected from human 1-3 were non-diabetic and human 4 had type 2\ diabetes mellitus. Using single-cell RNA-sequencing ~10,000 human pancreatic\ cells were isolated and sequenced. For each donor, several separate batches of\ ~800 cells were prepared and sequenced to obtain an average of about 100,000\ reads per cell. Cells were barcoded using the inDrop platform which follows the\ CEL-Seq protocol for library construction. Paired end sequencing was done on\ the Illumina Hiseq 2500. After filtering out cells with limited numbers of\ detected genes, the dataset contained 8,629 cells from the four donors.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Mayaan Baron, Adrian Veres, Samuel L. Wolock, Aubrey L. Faust, and to\ the many authors who worked on producing and publishing this data set. The data\ were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick then\ reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Baron M, Veres A, Wolock SL, Faust AL, Gaujoux R, Vetere A, Ryu JH, Wagner BK, Shen-Orr SS, Klein AM\ et al.\ \ A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell\ Population Structure.\ Cell Syst. 2016 Oct 26;3(4):346-360.e4.\ PMID: 27667365; PMC: PMC5228327

    \ singleCell 0 group singleCell\ longLabel Pancreas single cell sequencing from Baron et al 2016\ shortLabel Pancreas Baron\ superTrack on\ track pancreasBaron\ visibility hide\ pancreasBaronBatch Pancreas Batch bigBarChart Pancreas cells binned by batch from Baron et al 2016 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=human-pancreas&gene=$$

    Description

    \

    \ This track shows data from A Single-Cell Transcriptomic Map of the Human and Mouse\ Pancreas Reveals Inter- and Intra-cell Population Structure. Pancreas\ tissue was analyzed using droplet-based single-cell RNA-sequencing (scRNA-seq)\ and subsequent clustering distinguished 14 pancreas-resident cell types based\ on their identified marker genes found in Baron et al., 2016.

    \ \

    \ There are four bar chart tracks in this track collection with pancreas cells\ grouped by either batch (Pancreas Batch),\ cell type (Pancreas Cells), detailed\ cell type (Pancreas Details) and\ donor (Pancreas Donor). The default track\ displayed is pancreas cells grouped by cell type.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    secretory
    endothelial
    epithelial
    fibroblast
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the\ Pancreas Cells\ subtrack, where the bars represent relatively pure cell types. They can give an\ overview of the cell composition within other categories in other subtracks as\ well.

    \ \

    Method

    \

    \ Human islets were obtained from two female cadaveric donors ages 51 (human2)\ and 59 (human4) and two male cadaveric donors ages 17 (human1) and 38 (human3).\ The samples collected from human 1-3 were non-diabetic and human 4 had type 2\ diabetes mellitus. Using single-cell RNA-sequencing ~10,000 human pancreatic\ cells were isolated and sequenced. For each donor, several separate batches of\ ~800 cells were prepared and sequenced to obtain an average of about 100,000\ reads per cell. Cells were barcoded using the inDrop platform which follows the\ CEL-Seq protocol for library construction. Paired end sequencing was done on\ the Illumina Hiseq 2500. After filtering out cells with limited numbers of\ detected genes, the dataset contained 8,629 cells from the four donors.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Mayaan Baron, Adrian Veres, Samuel L. Wolock, Aubrey L. Faust, and to\ the many authors who worked on producing and publishing this data set. The data\ were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick then\ reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Baron M, Veres A, Wolock SL, Faust AL, Gaujoux R, Vetere A, Ryu JH, Wagner BK, Shen-Orr SS, Klein AM\ et al.\ \ A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell\ Population Structure.\ Cell Syst. 2016 Oct 26;3(4):346-360.e4.\ PMID: 27667365; PMC: PMC5228327

    \ singleCell 1 barChartBars human1_lib1 human1_lib2 human1_lib3 human2_lib1 human2_lib2 human2_lib3 human3_lib1 human3_lib2 human3_lib3 human3_lib4 human4_lib1 human4_lib3\ barChartColors #1e56cc #1e57cb #1c56d0 #2b5cb7 #2d5ab7 #275cbc #1256e0 #1055e2 #0f55e5 #0e55e6 #225ac4 #215ac6\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/pancreasBaron/batch.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/pancreasBaron/batch.bb\ defaultLabelFields name\ html pancreasBaron\ labelFields name,name2\ longLabel Pancreas cells binned by batch from Baron et al 2016\ parent pancreasBaron\ shortLabel Pancreas Batch\ track pancreasBaronBatch\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=human-pancreas&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ pancreasBaronCellType Pancreas Cells bigBarChart Pancreas cells binned by cell type from Baron et al 2016 3 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=human-pancreas&gene=$$

    Description

    \

    \ This track shows data from A Single-Cell Transcriptomic Map of the Human and Mouse\ Pancreas Reveals Inter- and Intra-cell Population Structure. Pancreas\ tissue was analyzed using droplet-based single-cell RNA-sequencing (scRNA-seq)\ and subsequent clustering distinguished 14 pancreas-resident cell types based\ on their identified marker genes found in Baron et al., 2016.

    \ \

    \ There are four bar chart tracks in this track collection with pancreas cells\ grouped by either batch (Pancreas Batch),\ cell type (Pancreas Cells), detailed\ cell type (Pancreas Details) and\ donor (Pancreas Donor). The default track\ displayed is pancreas cells grouped by cell type.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    secretory
    endothelial
    epithelial
    fibroblast
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the\ Pancreas Cells\ subtrack, where the bars represent relatively pure cell types. They can give an\ overview of the cell composition within other categories in other subtracks as\ well.

    \ \

    Method

    \

    \ Human islets were obtained from two female cadaveric donors ages 51 (human2)\ and 59 (human4) and two male cadaveric donors ages 17 (human1) and 38 (human3).\ The samples collected from human 1-3 were non-diabetic and human 4 had type 2\ diabetes mellitus. Using single-cell RNA-sequencing ~10,000 human pancreatic\ cells were isolated and sequenced. For each donor, several separate batches of\ ~800 cells were prepared and sequenced to obtain an average of about 100,000\ reads per cell. Cells were barcoded using the inDrop platform which follows the\ CEL-Seq protocol for library construction. Paired end sequencing was done on\ the Illumina Hiseq 2500. After filtering out cells with limited numbers of\ detected genes, the dataset contained 8,629 cells from the four donors.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Mayaan Baron, Adrian Veres, Samuel L. Wolock, Aubrey L. Faust, and to\ the many authors who worked on producing and publishing this data set. The data\ were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick then\ reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Baron M, Veres A, Wolock SL, Faust AL, Gaujoux R, Vetere A, Ryu JH, Wagner BK, Shen-Orr SS, Klein AM\ et al.\ \ A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell\ Population Structure.\ Cell Syst. 2016 Oct 26;3(4):346-360.e4.\ PMID: 27667365; PMC: PMC5228327

    \ singleCell 1 barChartBars acinar_cell stellate_(activated)_cell islet_alpha_cell islet_beta_cell islet_delta_cell ductal_cell endothelial_cell islet_epsilon_cell islet_gamma_cell other stellate_(quiescent)_cell\ barChartColors #0d55e6 #c68c6e #2a58bc #1754d9 #2457c4 #0298be #57d457 #c2cfe7 #7290d0 #f9b9b9 #c58c6e\ barChartLimit 2.5\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/pancreasBaron/cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/pancreasBaron/cell_type.bb\ defaultLabelFields name\ html pancreasBaron\ labelFields name,name2\ longLabel Pancreas cells binned by cell type from Baron et al 2016\ parent pancreasBaron\ shortLabel Pancreas Cells\ track pancreasBaronCellType\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=human-pancreas&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility pack\ pancreasBaronDetailedCellType Pancreas Details bigBarChart Pancreas cells binned by detailed cell type from Baron et al 2016 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=human-pancreas&gene=$$

    Description

    \

    \ This track shows data from A Single-Cell Transcriptomic Map of the Human and Mouse\ Pancreas Reveals Inter- and Intra-cell Population Structure. Pancreas\ tissue was analyzed using droplet-based single-cell RNA-sequencing (scRNA-seq)\ and subsequent clustering distinguished 14 pancreas-resident cell types based\ on their identified marker genes found in Baron et al., 2016.

    \ \

    \ There are four bar chart tracks in this track collection with pancreas cells\ grouped by either batch (Pancreas Batch),\ cell type (Pancreas Cells), detailed\ cell type (Pancreas Details) and\ donor (Pancreas Donor). The default track\ displayed is pancreas cells grouped by cell type.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    secretory
    endothelial
    epithelial
    fibroblast
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the\ Pancreas Cells\ subtrack, where the bars represent relatively pure cell types. They can give an\ overview of the cell composition within other categories in other subtracks as\ well.

    \ \

    Method

    \

    \ Human islets were obtained from two female cadaveric donors ages 51 (human2)\ and 59 (human4) and two male cadaveric donors ages 17 (human1) and 38 (human3).\ The samples collected from human 1-3 were non-diabetic and human 4 had type 2\ diabetes mellitus. Using single-cell RNA-sequencing ~10,000 human pancreatic\ cells were isolated and sequenced. For each donor, several separate batches of\ ~800 cells were prepared and sequenced to obtain an average of about 100,000\ reads per cell. Cells were barcoded using the inDrop platform which follows the\ CEL-Seq protocol for library construction. Paired end sequencing was done on\ the Illumina Hiseq 2500. After filtering out cells with limited numbers of\ detected genes, the dataset contained 8,629 cells from the four donors.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Mayaan Baron, Adrian Veres, Samuel L. Wolock, Aubrey L. Faust, and to\ the many authors who worked on producing and publishing this data set. The data\ were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick then\ reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Baron M, Veres A, Wolock SL, Faust AL, Gaujoux R, Vetere A, Ryu JH, Wagner BK, Shen-Orr SS, Klein AM\ et al.\ \ A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell\ Population Structure.\ Cell Syst. 2016 Oct 26;3(4):346-360.e4.\ PMID: 27667365; PMC: PMC5228327

    \ singleCell 1 barChartBars acinar activated_stellate alpha beta delta ductal endothelial epsilon gamma macrophage mast quiescent_stellate schwann t_cell\ barChartColors #0d55e6 #c68c6e #2a58bc #1754d9 #2457c4 #0298be #57d457 #c2cfe7 #7290d0 #f5bcbc #edc0c0 #c58c6e #dfcac6 #eadadb\ barChartLimit 2.5\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/pancreasBaron/detailed_cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/pancreasBaron/detailed_cell_type.bb\ defaultLabelFields name\ html pancreasBaron\ labelFields name,name2\ longLabel Pancreas cells binned by detailed cell type from Baron et al 2016\ parent pancreasBaron\ shortLabel Pancreas Details\ track pancreasBaronDetailedCellType\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=human-pancreas&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ pancreasBaronDonor Pancreas Donor bigBarChart Pancreas cells binned by organ donor from Baron et al 2016 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=human-pancreas&gene=$$

    Description

    \

    \ This track shows data from A Single-Cell Transcriptomic Map of the Human and Mouse\ Pancreas Reveals Inter- and Intra-cell Population Structure. Pancreas\ tissue was analyzed using droplet-based single-cell RNA-sequencing (scRNA-seq)\ and subsequent clustering distinguished 14 pancreas-resident cell types based\ on their identified marker genes found in Baron et al., 2016.

    \ \

    \ There are four bar chart tracks in this track collection with pancreas cells\ grouped by either batch (Pancreas Batch),\ cell type (Pancreas Cells), detailed\ cell type (Pancreas Details) and\ donor (Pancreas Donor). The default track\ displayed is pancreas cells grouped by cell type.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    secretory
    endothelial
    epithelial
    fibroblast
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the\ Pancreas Cells\ subtrack, where the bars represent relatively pure cell types. They can give an\ overview of the cell composition within other categories in other subtracks as\ well.

    \ \

    Method

    \

    \ Human islets were obtained from two female cadaveric donors ages 51 (human2)\ and 59 (human4) and two male cadaveric donors ages 17 (human1) and 38 (human3).\ The samples collected from human 1-3 were non-diabetic and human 4 had type 2\ diabetes mellitus. Using single-cell RNA-sequencing ~10,000 human pancreatic\ cells were isolated and sequenced. For each donor, several separate batches of\ ~800 cells were prepared and sequenced to obtain an average of about 100,000\ reads per cell. Cells were barcoded using the inDrop platform which follows the\ CEL-Seq protocol for library construction. Paired end sequencing was done on\ the Illumina Hiseq 2500. After filtering out cells with limited numbers of\ detected genes, the dataset contained 8,629 cells from the four donors.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Mayaan Baron, Adrian Veres, Samuel L. Wolock, Aubrey L. Faust, and to\ the many authors who worked on producing and publishing this data set. The data\ were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick then\ reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Baron M, Veres A, Wolock SL, Faust AL, Gaujoux R, Vetere A, Ryu JH, Wagner BK, Shen-Orr SS, Klein AM\ et al.\ \ A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell\ Population Structure.\ Cell Syst. 2016 Oct 26;3(4):346-360.e4.\ PMID: 27667365; PMC: PMC5228327

    \ singleCell 1 barChartBars human1 human2 human3 human4\ barChartColors #1d56cf #2a5bba #0f55e4 #225ac5\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/pancreasBaron/donor.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/pancreasBaron/donor.bb\ defaultLabelFields name\ html pancreasBaron\ labelFields name,name2\ longLabel Pancreas cells binned by organ donor from Baron et al 2016\ parent pancreasBaron\ shortLabel Pancreas Donor\ track pancreasBaronDonor\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=human-pancreas&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ panelApp PanelApp bigBed 9 + Genomics England PanelApp Diagnostics 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ The\ Genomics England PanelApp\ tracks show gene panels that are related to human disorders. Originally developed to\ aid interpretation of participant genomes in the\ 100,000 Genomes Project, PanelApp is now also being used as the platform for\ achieving consensus on gene panels in the\ \ NHS Genomic Medicine Service (GMS).\ As panels in PanelApp are publicly available, they can also be used by other groups\ and projects. Panels are maintained and updated by\ Genomics England curators.\

    \ Genes and genomic\ entities (short tandem repeats/STRs and copy number variants/CNVs)\ have been reviewed by experts to enable a community consensus to be reached on which\ genes and genomic entities should appear on a diagnostics grade panel for each disorder.\ A rating system (confidence level 0 - 3) is used to classify the level of evidence\ supporting association with phenotypes covered by the gene panel in question.\

    \

    \ The available data tracks are: \

    \ \
      \
    • \ Genomics England PanelApp Genes (PanelApp Genes):\
      \ shows genes with evidence supporting a gene-disease relationship.\

      NOTE: Due to a bug in the PanelApp gene API, between \ 5 and 20% of gene entries are missing as of 11/2/22.

      \
      • \
      \
    • \ Genomics England PanelApp STRs (PanelApp STRs):\
      \ shows short tandem repeats that can be disease-causing when a particular number of repeats is\ present.
      • \
      \
    • \ Only on hg38: Genomics England PanelApp Regions (PanelApp CNV Regions):\
      \ shows copy-number variants (region-loss and region-gain) with evidence supporting a gene-disease\ relationship.
      • \
    \ \

    Display Conventions

    \

    \ The individual tracks are colored by confidence level:\ \

      \
    • Score 3 (lime green) - High level of evidence \ for this gene-disease association. Demonstrates confidence that this gene should be \ used for genome interpretation.
      • \
    • Score 2 (amber) - Moderate evidence \ for this gene-disease association. This gene should not be used for genomic \ interpretation.
      • \
    • Score 0 or 1 (red) - Not enough evidence \ for this gene-disease association. This gene should not be used for \ genomic interpretation.
      • \
    \

    \ Mouseover on items shows the gene name, panel associated, mode of inheritance \ (if known), phenotypes related to the gene, and confidence level. Tracks can \ be filtered according to the confidence \ level of disease association evidence. For more information on \ the use of this data, see the PanelApp\ FAQs.\

    \ \

    Data Access

    \

    \ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated analysis, the data may be queried from our\ REST API.\

    \

    \ For automated download and analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from\ our download server.\ The files for this track are called genes.bb, tandRep.bb and cnv.bb. Individual\ regions or the whole genome annotation can be obtained using our tool bigBedToBed\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool\ can also be used to obtain only features within a given range, e.g. \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/panelApp/genes.bb -chrom=chr21 -start=0 -end=100000000 stdout

    \ \

    \ Please refer to our\ \ mailing list archives for questions, or our\ \ Data Access FAQ for more information.\

    \

    \ Data is also freely available on the\ PanelApp API.\

    \ \

    Updates and archiving of old releases

    \

    \ This track is updated automatically every week. If you need to access older releases of the data,\ you can download them from our archive directory on the download server. To load them into the browser, select a week on the archive directory, copy the link to a file, go to My Data > Custom Tracks, click "Add custom track", paste the link into the box and click "Submit".\

    \ \

    Methods

    \

    \ PanelApp files were reformatted at UCSC to the bigBed format. The script that updates the track is called \ updatePanelApp and can be found in our Github repository.\

    \ \

    Credits

    \

    \ Thank you to Genomics England PanelApp, especially Catherine Snow for technical\ coordination and consultation. Thank you to Beagan Nguy, Christopher Lee, Daniel Schmelter,\ Ana Benet-Pagès and Maximilian Haeussler of the Genome Browser team for the creation of the tracks.\

    \ \

    Reference

    \

    \ Martin AR, Williams E, Foulger RE, Leigh S, Daugherty LC, Niblock O, Leong IUS, Smith KR,\ Gerasimenko O, Haraldsdottir E et al.\ \ PanelApp crowdsources expert knowledge to establish consensus diagnostic gene panels.\ Nat Genet. 2019 Nov;51(11):1560-1565.\ PMID: 31676867\

    \ phenDis 1 compositeTrack on\ group phenDis\ longLabel Genomics England PanelApp Diagnostics\ shortLabel PanelApp\ track panelApp\ type bigBed 9 +\ visibility hide\ ucscGenePfam Pfam in GENCODE bed 12 Pfam Domains in GENCODE Genes 0 100 20 0 250 137 127 252 0 0 0 https://www.ebi.ac.uk/interpro/search/text/$$/?page=1#table

    Description

    \ \

    \ Most proteins are composed of one or more conserved functional regions called\ domains. This track shows the high-quality, manually-curated\ \ Pfam-A\ domains found in transcripts located in the GENCODE Genes track by the software HMMER3.\

    \ \

    Display Conventions and Configuration

    \ \

    \ This track follows the display conventions for\ gene\ tracks.\

    \ \

    Methods

    \ \

    \ The sequences from the knownGenePep table (see \ GENCODE Genes description page)\ are submitted to the set of Pfam-A HMMs which annotate regions within the\ predicted peptide that are recognizable as Pfam protein domains. These regions\ are then mapped to the transcripts themselves using the\ \ pslMap utility. A complete shell script log for every version of UCSC genes can be found in \ our GitHub repository under \ \ hg/makeDb/doc/ucscGenes, e.g. \ \ mm10.knownGenes17.csh is for the database mm10 and version 17 of UCSC known genes.\

    \ \

    \ Of the several options for filtering out false positives, the "Trusted cutoff (TC)" \ threshold method is used in this track to determine significance. For more information regarding \ thresholds and scores, see the HMMER \ documentation and\ results interpretation pages.\

    \ \

    \ Note: There is currently an undocumented but known HMMER problem which results in lessened \ sensitivity and possible missed searches for some zinc finger domains. Until a fix is released for \ HMMER /PFAM thresholds, please also consult the "UniProt Domains" subtrack of the UniProt\ track for more comprehensive zinc finger annotations.\

    \ \

    Credits

    \ \

    \ pslMap was written by Mark Diekhans at UCSC.\

    \ \

    References

    \ \

    \ Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G,\ Forslund K et al.\ The Pfam protein families database.\ Nucleic Acids Res. 2010 Jan;38(Database issue):D211-22.\ PMID: 19920124; PMC: PMC2808889\

    \ genes 1 color 20,0,250\ group genes\ html gencodePfam\ longLabel Pfam Domains in GENCODE Genes\ shortLabel Pfam in GENCODE\ track ucscGenePfam\ type bed 12\ url https://www.ebi.ac.uk/interpro/search/text/$$/?page=1#table\ placentaVentoTormoCellType10x Placenta Cells bigBarChart Placenta and decidua cells binned by cell type 10x from Vento-Tormo et al 2018 3 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=placenta-decidua+10x&gene=$$

    Description

    \

    \ This track displays data from Single-cell reconstruction of the early maternal-fetal\ interface in humans. Using droplet-based 10x and plate-based\ Smart-seq2 single cell RNA-sequencing (scRNA-seq) ~70,000 cells were profiled\ from first-trimester placentas with matched decidual cells and maternal\ peripheral blood mononuclear cells (PBMC).

    \ \

    \ This track collection contains nine bar chart tracks of RNA expression in the\ human placenta, decidua, and maternal PBMCs\ where cells are grouped by cell type (Placenta\ Cells, Placenta Cells Ss2), detailed\ cell type (Placenta Detail,\ Placenta Detail Ss2), cell location\ (Placenta Loc,\ Placenta Loc Ss2), stage\ (Placenta Stage), and placenta and\ decidua cells (Placenta Mat/Fet,\ Placenta Mat/Fet Ss2). The default tracks\ displayed are Placenta Cells,\ Placenta Loc,\ Placenta Loc Ss2, and\ Placenta Mat/Fet Ss2.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    trophoblast
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Placenta Cells and\ Placenta Cells Ss2\ subtracks, where the bars represent relatively pure cell types. They can give an overview of \ the cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Tissue was collected from 5 placentas (6-14 gestational weeks) and 11 deciduas.\ Additionally, blood was drawn from 6 of the donors (D4-D9) and enriched for\ PBMCs using a Ficoll-Paque gradient. Decidual and placental tissue were both\ first macroscopically separated. Decidual tissue was then chopped before\ enzymatic dissociation. Placental villi was scraped from the chorionic membrane\ before enzymatic dissociation. Decidual and blood cells were enriched for\ certain populations using an antibody panel prior to Smart-seq2 library\ preparation. Cells from blood decidua and placenta were enriched using FACS\ prior to 10x Genomics v2 library preparation. Smart-seq2 libraries were\ sequenced on an Illumina HiSeq2000. 10x libraries were sequenced on an Illumina\ HiSeq4000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Roser Vento-Tormo, Mirjana Efremova, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\

    \ \ \ singleCell 1 barChartBars T_cell_CD4+ T_cell_CD8+ extravillous_trophoblast_(EVT) endothelial_cell T_cell_mucosal_(MAIT) myeloid_cell natural_killer_cell_(NK) other_immune_cell syncytiotrophoblast_(SCT) villous_cytotrophoblast_(VCT) decidual_perivascular_cell_(dP) decidual_stromal_cell_(dS) fetal_fibroblast_(fFB)\ barChartColors #f63247 #fa3248 #6026c2 #06bb03 #f73247 #de2903 #f03142 #ee1313 #5823d1 #5923cf #a1288a #be03bb #af4f22\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/placentaVentoTormo/10x/cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/placentaVentoTormo/10x/cell_type.bb\ defaultLabelFields name\ html placentaVentoTormo\ labelFields name,name2\ longLabel Placenta and decidua cells binned by cell type 10x from Vento-Tormo et al 2018\ parent placentaVentoTormo\ shortLabel Placenta Cells\ track placentaVentoTormoCellType10x\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=placenta-decidua+10x&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility pack\ placentaVentoTormoCellTypeSs2 Placenta Cells Ss2 bigBarChart Placenta and decidua cells binned by cell type smart-seq2 from Vento-Tormo et al 2018 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=placenta-decidua+ss2&gene=$$

    Description

    \

    \ This track displays data from Single-cell reconstruction of the early maternal-fetal\ interface in humans. Using droplet-based 10x and plate-based\ Smart-seq2 single cell RNA-sequencing (scRNA-seq) ~70,000 cells were profiled\ from first-trimester placentas with matched decidual cells and maternal\ peripheral blood mononuclear cells (PBMC).

    \ \

    \ This track collection contains nine bar chart tracks of RNA expression in the\ human placenta, decidua, and maternal PBMCs\ where cells are grouped by cell type (Placenta\ Cells, Placenta Cells Ss2), detailed\ cell type (Placenta Detail,\ Placenta Detail Ss2), cell location\ (Placenta Loc,\ Placenta Loc Ss2), stage\ (Placenta Stage), and placenta and\ decidua cells (Placenta Mat/Fet,\ Placenta Mat/Fet Ss2). The default tracks\ displayed are Placenta Cells,\ Placenta Loc,\ Placenta Loc Ss2, and\ Placenta Mat/Fet Ss2.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    trophoblast
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Placenta Cells and\ Placenta Cells Ss2\ subtracks, where the bars represent relatively pure cell types. They can give an overview of \ the cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Tissue was collected from 5 placentas (6-14 gestational weeks) and 11 deciduas.\ Additionally, blood was drawn from 6 of the donors (D4-D9) and enriched for\ PBMCs using a Ficoll-Paque gradient. Decidual and placental tissue were both\ first macroscopically separated. Decidual tissue was then chopped before\ enzymatic dissociation. Placental villi was scraped from the chorionic membrane\ before enzymatic dissociation. Decidual and blood cells were enriched for\ certain populations using an antibody panel prior to Smart-seq2 library\ preparation. Cells from blood decidua and placenta were enriched using FACS\ prior to 10x Genomics v2 library preparation. Smart-seq2 libraries were\ sequenced on an Illumina HiSeq2000. 10x libraries were sequenced on an Illumina\ HiSeq4000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Roser Vento-Tormo, Mirjana Efremova, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\

    \ \ \ singleCell 1 barChartBars T_cell_CD4+ T_cell_CD8+ extravillous_trophoblast_(EVT) endothelial_cell T_cell_mucosal_(MAIT) myeloid_cell natural_killer_cell_(NK) other_immune_cell syncytiotrophoblast_(SCT) villous_cytotrophoblast_(VCT) decidual_perivascular_cell_(dP) decidual_stromal_cell_(dS) fetal_fibroblast_(fFB)\ barChartColors #f83147 #fa3249 #906de0 #90e28f #fa7685 #df2902 #f63248 #f46162 #cebef2 #e66b76 #c76bb1 #d456d3 #efdcd3\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/placentaVentoTormo/ss2/cell_type.stats\ barChartUnit units/cell\ bigDataUrl /gbdb/hg38/bbi/placentaVentoTormo/ss2/cell_type.bb\ defaultLabelFields name\ html placentaVentoTormo\ labelFields name,name2\ longLabel Placenta and decidua cells binned by cell type smart-seq2 from Vento-Tormo et al 2018\ parent placentaVentoTormo\ shortLabel Placenta Cells Ss2\ track placentaVentoTormoCellTypeSs2\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=placenta-decidua+ss2&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ placentaVentoTormoCellDetailed10x Placenta Detail bigBarChart Placenta and decidua cells binned by detailed cell type 10x from Vento-Tormo et al 2018 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=placenta-decidua+10x&gene=$$

    Description

    \

    \ This track displays data from Single-cell reconstruction of the early maternal-fetal\ interface in humans. Using droplet-based 10x and plate-based\ Smart-seq2 single cell RNA-sequencing (scRNA-seq) ~70,000 cells were profiled\ from first-trimester placentas with matched decidual cells and maternal\ peripheral blood mononuclear cells (PBMC).

    \ \

    \ This track collection contains nine bar chart tracks of RNA expression in the\ human placenta, decidua, and maternal PBMCs\ where cells are grouped by cell type (Placenta\ Cells, Placenta Cells Ss2), detailed\ cell type (Placenta Detail,\ Placenta Detail Ss2), cell location\ (Placenta Loc,\ Placenta Loc Ss2), stage\ (Placenta Stage), and placenta and\ decidua cells (Placenta Mat/Fet,\ Placenta Mat/Fet Ss2). The default tracks\ displayed are Placenta Cells,\ Placenta Loc,\ Placenta Loc Ss2, and\ Placenta Mat/Fet Ss2.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    trophoblast
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Placenta Cells and\ Placenta Cells Ss2\ subtracks, where the bars represent relatively pure cell types. They can give an overview of \ the cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Tissue was collected from 5 placentas (6-14 gestational weeks) and 11 deciduas.\ Additionally, blood was drawn from 6 of the donors (D4-D9) and enriched for\ PBMCs using a Ficoll-Paque gradient. Decidual and placental tissue were both\ first macroscopically separated. Decidual tissue was then chopped before\ enzymatic dissociation. Placental villi was scraped from the chorionic membrane\ before enzymatic dissociation. Decidual and blood cells were enriched for\ certain populations using an antibody panel prior to Smart-seq2 library\ preparation. Cells from blood decidua and placenta were enriched using FACS\ prior to 10x Genomics v2 library preparation. Smart-seq2 libraries were\ sequenced on an Illumina HiSeq2000. 10x libraries were sequenced on an Illumina\ HiSeq4000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Roser Vento-Tormo, Mirjana Efremova, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\

    \ \ \ singleCell 1 barChartBars DC1 DC2 EVT Endo_(f) Endo_(m) Endo_L Granulocytes HB ILC3 MAIT MO NK_CD16+ NK_CD16- PB_Naive_CD4_ PB_Naive_CD8 PB_clonal_CD8 Plasma SCT Treg VCT dM1 dM2 dM3 dNK_p dNK1 dNK2 dNK3 dP1 dP2 dS1 dS2 dS3 dT_CD4 dT_CD8 fFB1 fFB2\ barChartColors #ef6665 #ef6565 #6026c2 #78b768 #0db506 #6bc361 #ee6e73 #ce2e17 #f4737d #f73247 #e22016 #f23144 #f97684 #f53246 #f43246 #f73247 #ef6668 #5823d1 #f6737d #5923cf #db2a07 #dc2a08 #d72b0d #e32d36 #ea303d #ef3142 #f03142 #8f3b75 #ad1a9a #bd05b8 #bd05b7 #b2169d #f83247 #f43042 #af4f22 #c48778\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/placentaVentoTormo/10x/detailed_cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/placentaVentoTormo/10x/detailed_cell_type.bb\ defaultLabelFields name\ html placentaVentoTormo\ labelFields name,name2\ longLabel Placenta and decidua cells binned by detailed cell type 10x from Vento-Tormo et al 2018\ parent placentaVentoTormo\ shortLabel Placenta Detail\ track placentaVentoTormoCellDetailed10x\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=placenta-decidua+10x&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ placentaVentoTormoCellDetailedSs2 Placenta Detail Ss2 bigBarChart Placenta and decidua cells binned by detailed cell type smart-seq2 from Vento-Tormo et al 2018 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=placenta-decidua+ss2&gene=$$

    Description

    \

    \ This track displays data from Single-cell reconstruction of the early maternal-fetal\ interface in humans. Using droplet-based 10x and plate-based\ Smart-seq2 single cell RNA-sequencing (scRNA-seq) ~70,000 cells were profiled\ from first-trimester placentas with matched decidual cells and maternal\ peripheral blood mononuclear cells (PBMC).

    \ \

    \ This track collection contains nine bar chart tracks of RNA expression in the\ human placenta, decidua, and maternal PBMCs\ where cells are grouped by cell type (Placenta\ Cells, Placenta Cells Ss2), detailed\ cell type (Placenta Detail,\ Placenta Detail Ss2), cell location\ (Placenta Loc,\ Placenta Loc Ss2), stage\ (Placenta Stage), and placenta and\ decidua cells (Placenta Mat/Fet,\ Placenta Mat/Fet Ss2). The default tracks\ displayed are Placenta Cells,\ Placenta Loc,\ Placenta Loc Ss2, and\ Placenta Mat/Fet Ss2.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    trophoblast
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Placenta Cells and\ Placenta Cells Ss2\ subtracks, where the bars represent relatively pure cell types. They can give an overview of \ the cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Tissue was collected from 5 placentas (6-14 gestational weeks) and 11 deciduas.\ Additionally, blood was drawn from 6 of the donors (D4-D9) and enriched for\ PBMCs using a Ficoll-Paque gradient. Decidual and placental tissue were both\ first macroscopically separated. Decidual tissue was then chopped before\ enzymatic dissociation. Placental villi was scraped from the chorionic membrane\ before enzymatic dissociation. Decidual and blood cells were enriched for\ certain populations using an antibody panel prior to Smart-seq2 library\ preparation. Cells from blood decidua and placenta were enriched using FACS\ prior to 10x Genomics v2 library preparation. Smart-seq2 libraries were\ sequenced on an Illumina HiSeq2000. 10x libraries were sequenced on an Illumina\ HiSeq4000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Roser Vento-Tormo, Mirjana Efremova, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\

    \ \ \ singleCell 1 barChartBars DC1 DC2 EVT Endo_(m) Endo_L Granulocytes HB ILC3 MAIT MO NK_CD16+ NK_CD16- PB_Naive_CD4_ PB_Naive_CD8 PB_clonal_CD8 Plasma SCT Treg VCT dM1 dM2 dM3 dNK_p dNK1 dNK2 dNK3 dP1 dP2 dS1 dS2 dS3 dT_CD4 dT_CD8 fFB1\ barChartColors #f6bcbd #f6bcbc #906de0 #90e18f #dbe7d5 #f2bfc4 #f4c0b6 #fac0c5 #fa7685 #e67061 #f77684 #fbc2c8 #f73146 #f87684 #f97685 #f6bcbd #cebef2 #fabec2 #e66b76 #db2a06 #e6715b #f4c0b7 #f8c2c8 #f27684 #f77685 #f97685 #e4c0d8 #e8bcdf #d458d0 #d458d1 #eab9e4 #fa7684 #f83248 #efdcd3\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/placentaVentoTormo/ss2/detailed_cell_type.stats\ barChartUnit units/cell\ bigDataUrl /gbdb/hg38/bbi/placentaVentoTormo/ss2/detailed_cell_type.bb\ defaultLabelFields name\ html placentaVentoTormo\ labelFields name,name2\ longLabel Placenta and decidua cells binned by detailed cell type smart-seq2 from Vento-Tormo et al 2018\ parent placentaVentoTormo\ shortLabel Placenta Detail Ss2\ track placentaVentoTormoCellDetailedSs2\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=placenta-decidua+ss2&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ placentaVentoTormoLocation10x Placenta Loc bigBarChart Placenta and decidua cells binned by cell location 10x from Vento-Tormo et al 2018 3 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=placenta-decidua+10x&gene=$$

    Description

    \

    \ This track displays data from Single-cell reconstruction of the early maternal-fetal\ interface in humans. Using droplet-based 10x and plate-based\ Smart-seq2 single cell RNA-sequencing (scRNA-seq) ~70,000 cells were profiled\ from first-trimester placentas with matched decidual cells and maternal\ peripheral blood mononuclear cells (PBMC).

    \ \

    \ This track collection contains nine bar chart tracks of RNA expression in the\ human placenta, decidua, and maternal PBMCs\ where cells are grouped by cell type (Placenta\ Cells, Placenta Cells Ss2), detailed\ cell type (Placenta Detail,\ Placenta Detail Ss2), cell location\ (Placenta Loc,\ Placenta Loc Ss2), stage\ (Placenta Stage), and placenta and\ decidua cells (Placenta Mat/Fet,\ Placenta Mat/Fet Ss2). The default tracks\ displayed are Placenta Cells,\ Placenta Loc,\ Placenta Loc Ss2, and\ Placenta Mat/Fet Ss2.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    trophoblast
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Placenta Cells and\ Placenta Cells Ss2\ subtracks, where the bars represent relatively pure cell types. They can give an overview of \ the cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Tissue was collected from 5 placentas (6-14 gestational weeks) and 11 deciduas.\ Additionally, blood was drawn from 6 of the donors (D4-D9) and enriched for\ PBMCs using a Ficoll-Paque gradient. Decidual and placental tissue were both\ first macroscopically separated. Decidual tissue was then chopped before\ enzymatic dissociation. Placental villi was scraped from the chorionic membrane\ before enzymatic dissociation. Decidual and blood cells were enriched for\ certain populations using an antibody panel prior to Smart-seq2 library\ preparation. Cells from blood decidua and placenta were enriched using FACS\ prior to 10x Genomics v2 library preparation. Smart-seq2 libraries were\ sequenced on an Illumina HiSeq2000. 10x libraries were sequenced on an Illumina\ HiSeq4000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Roser Vento-Tormo, Mirjana Efremova, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\

    \ \ \ singleCell 1 barChartBars Blood Decidua Placenta\ barChartColors #f73246 #c6294e #5923cf\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/placentaVentoTormo/10x/Location.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/placentaVentoTormo/10x/Location.bb\ defaultLabelFields name\ html placentaVentoTormo\ labelFields name,name2\ longLabel Placenta and decidua cells binned by cell location 10x from Vento-Tormo et al 2018\ parent placentaVentoTormo\ shortLabel Placenta Loc\ track placentaVentoTormoLocation10x\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=placenta-decidua+10x&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility pack\ placentaVentoTormoLocationSs2 Placenta Loc Ss2 bigBarChart Placenta and decidua cells binned by cell location smart-seq2 from Vento-Tormo et al 2018 3 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=placenta-decidua+ss2&gene=$$

    Description

    \

    \ This track displays data from Single-cell reconstruction of the early maternal-fetal\ interface in humans. Using droplet-based 10x and plate-based\ Smart-seq2 single cell RNA-sequencing (scRNA-seq) ~70,000 cells were profiled\ from first-trimester placentas with matched decidual cells and maternal\ peripheral blood mononuclear cells (PBMC).

    \ \

    \ This track collection contains nine bar chart tracks of RNA expression in the\ human placenta, decidua, and maternal PBMCs\ where cells are grouped by cell type (Placenta\ Cells, Placenta Cells Ss2), detailed\ cell type (Placenta Detail,\ Placenta Detail Ss2), cell location\ (Placenta Loc,\ Placenta Loc Ss2), stage\ (Placenta Stage), and placenta and\ decidua cells (Placenta Mat/Fet,\ Placenta Mat/Fet Ss2). The default tracks\ displayed are Placenta Cells,\ Placenta Loc,\ Placenta Loc Ss2, and\ Placenta Mat/Fet Ss2.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    trophoblast
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Placenta Cells and\ Placenta Cells Ss2\ subtracks, where the bars represent relatively pure cell types. They can give an overview of \ the cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Tissue was collected from 5 placentas (6-14 gestational weeks) and 11 deciduas.\ Additionally, blood was drawn from 6 of the donors (D4-D9) and enriched for\ PBMCs using a Ficoll-Paque gradient. Decidual and placental tissue were both\ first macroscopically separated. Decidual tissue was then chopped before\ enzymatic dissociation. Placental villi was scraped from the chorionic membrane\ before enzymatic dissociation. Decidual and blood cells were enriched for\ certain populations using an antibody panel prior to Smart-seq2 library\ preparation. Cells from blood decidua and placenta were enriched using FACS\ prior to 10x Genomics v2 library preparation. Smart-seq2 libraries were\ sequenced on an Illumina HiSeq2000. 10x libraries were sequenced on an Illumina\ HiSeq4000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Roser Vento-Tormo, Mirjana Efremova, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\

    \ \ \ singleCell 1 barChartBars Blood Decidua\ barChartColors #f22532 #e9222c\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/placentaVentoTormo/ss2/Location.stats\ barChartUnit units/cell\ bigDataUrl /gbdb/hg38/bbi/placentaVentoTormo/ss2/Location.bb\ defaultLabelFields name\ html placentaVentoTormo\ labelFields name,name2\ longLabel Placenta and decidua cells binned by cell location smart-seq2 from Vento-Tormo et al 2018\ parent placentaVentoTormo\ shortLabel Placenta Loc Ss2\ track placentaVentoTormoLocationSs2\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=placenta-decidua+ss2&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility pack\ placentaVentoTormoMatFet10x Placenta Mat/Fet bigBarChart Placenta and decidua cells binned by maternal/fetal 10x from Vento-Tormo et al 2018 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=placenta-decidua+10x&gene=$$

    Description

    \

    \ This track displays data from Single-cell reconstruction of the early maternal-fetal\ interface in humans. Using droplet-based 10x and plate-based\ Smart-seq2 single cell RNA-sequencing (scRNA-seq) ~70,000 cells were profiled\ from first-trimester placentas with matched decidual cells and maternal\ peripheral blood mononuclear cells (PBMC).

    \ \

    \ This track collection contains nine bar chart tracks of RNA expression in the\ human placenta, decidua, and maternal PBMCs\ where cells are grouped by cell type (Placenta\ Cells, Placenta Cells Ss2), detailed\ cell type (Placenta Detail,\ Placenta Detail Ss2), cell location\ (Placenta Loc,\ Placenta Loc Ss2), stage\ (Placenta Stage), and placenta and\ decidua cells (Placenta Mat/Fet,\ Placenta Mat/Fet Ss2). The default tracks\ displayed are Placenta Cells,\ Placenta Loc,\ Placenta Loc Ss2, and\ Placenta Mat/Fet Ss2.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    trophoblast
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Placenta Cells and\ Placenta Cells Ss2\ subtracks, where the bars represent relatively pure cell types. They can give an overview of \ the cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Tissue was collected from 5 placentas (6-14 gestational weeks) and 11 deciduas.\ Additionally, blood was drawn from 6 of the donors (D4-D9) and enriched for\ PBMCs using a Ficoll-Paque gradient. Decidual and placental tissue were both\ first macroscopically separated. Decidual tissue was then chopped before\ enzymatic dissociation. Placental villi was scraped from the chorionic membrane\ before enzymatic dissociation. Decidual and blood cells were enriched for\ certain populations using an antibody panel prior to Smart-seq2 library\ preparation. Cells from blood decidua and placenta were enriched using FACS\ prior to 10x Genomics v2 library preparation. Smart-seq2 libraries were\ sequenced on an Illumina HiSeq2000. 10x libraries were sequenced on an Illumina\ HiSeq4000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Roser Vento-Tormo, Mirjana Efremova, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\

    \ \ \ singleCell 1 barChartBars fetal maternal unknown\ barChartColors #5823d1 #e32935 #6bc361\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/placentaVentoTormo/10x/mom_child.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/placentaVentoTormo/10x/mom_child.bb\ defaultLabelFields name\ html placentaVentoTormo\ labelFields name,name2\ longLabel Placenta and decidua cells binned by maternal/fetal 10x from Vento-Tormo et al 2018\ parent placentaVentoTormo\ shortLabel Placenta Mat/Fet\ track placentaVentoTormoMatFet10x\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=placenta-decidua+10x&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ placentaVentoTormoMatFetSs2 Placenta Mat/Fet Ss2 bigBarChart Placenta and decidua cells binned by maternal/fetal smart-seq2 from Vento-Tormo et al 2018 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=placenta-decidua+ss2&gene=$$

    Description

    \

    \ This track displays data from Single-cell reconstruction of the early maternal-fetal\ interface in humans. Using droplet-based 10x and plate-based\ Smart-seq2 single cell RNA-sequencing (scRNA-seq) ~70,000 cells were profiled\ from first-trimester placentas with matched decidual cells and maternal\ peripheral blood mononuclear cells (PBMC).

    \ \

    \ This track collection contains nine bar chart tracks of RNA expression in the\ human placenta, decidua, and maternal PBMCs\ where cells are grouped by cell type (Placenta\ Cells, Placenta Cells Ss2), detailed\ cell type (Placenta Detail,\ Placenta Detail Ss2), cell location\ (Placenta Loc,\ Placenta Loc Ss2), stage\ (Placenta Stage), and placenta and\ decidua cells (Placenta Mat/Fet,\ Placenta Mat/Fet Ss2). The default tracks\ displayed are Placenta Cells,\ Placenta Loc,\ Placenta Loc Ss2, and\ Placenta Mat/Fet Ss2.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    trophoblast
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Placenta Cells and\ Placenta Cells Ss2\ subtracks, where the bars represent relatively pure cell types. They can give an overview of \ the cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Tissue was collected from 5 placentas (6-14 gestational weeks) and 11 deciduas.\ Additionally, blood was drawn from 6 of the donors (D4-D9) and enriched for\ PBMCs using a Ficoll-Paque gradient. Decidual and placental tissue were both\ first macroscopically separated. Decidual tissue was then chopped before\ enzymatic dissociation. Placental villi was scraped from the chorionic membrane\ before enzymatic dissociation. Decidual and blood cells were enriched for\ certain populations using an antibody panel prior to Smart-seq2 library\ preparation. Cells from blood decidua and placenta were enriched using FACS\ prior to 10x Genomics v2 library preparation. Smart-seq2 libraries were\ sequenced on an Illumina HiSeq2000. 10x libraries were sequenced on an Illumina\ HiSeq4000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Roser Vento-Tormo, Mirjana Efremova, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\

    \ \ \ singleCell 1 barChartBars fetal maternal\ barChartColors #936ddc #f0232e\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/placentaVentoTormo/ss2/mom_child.stats\ barChartUnit units/cell\ bigDataUrl /gbdb/hg38/bbi/placentaVentoTormo/ss2/mom_child.bb\ defaultLabelFields name\ html placentaVentoTormo\ labelFields name,name2\ longLabel Placenta and decidua cells binned by maternal/fetal smart-seq2 from Vento-Tormo et al 2018\ parent placentaVentoTormo\ shortLabel Placenta Mat/Fet Ss2\ track placentaVentoTormoMatFetSs2\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=placenta-decidua+ss2&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ placentaVentoTormoStage10x Placenta Stage bigBarChart Placenta and decidua cells binned by placental stage 10x from Vento-Tormo et al 2018 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=placenta-decidua+10x&gene=$$

    Description

    \

    \ This track displays data from Single-cell reconstruction of the early maternal-fetal\ interface in humans. Using droplet-based 10x and plate-based\ Smart-seq2 single cell RNA-sequencing (scRNA-seq) ~70,000 cells were profiled\ from first-trimester placentas with matched decidual cells and maternal\ peripheral blood mononuclear cells (PBMC).

    \ \

    \ This track collection contains nine bar chart tracks of RNA expression in the\ human placenta, decidua, and maternal PBMCs\ where cells are grouped by cell type (Placenta\ Cells, Placenta Cells Ss2), detailed\ cell type (Placenta Detail,\ Placenta Detail Ss2), cell location\ (Placenta Loc,\ Placenta Loc Ss2), stage\ (Placenta Stage), and placenta and\ decidua cells (Placenta Mat/Fet,\ Placenta Mat/Fet Ss2). The default tracks\ displayed are Placenta Cells,\ Placenta Loc,\ Placenta Loc Ss2, and\ Placenta Mat/Fet Ss2.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    trophoblast
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Placenta Cells and\ Placenta Cells Ss2\ subtracks, where the bars represent relatively pure cell types. They can give an overview of \ the cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Tissue was collected from 5 placentas (6-14 gestational weeks) and 11 deciduas.\ Additionally, blood was drawn from 6 of the donors (D4-D9) and enriched for\ PBMCs using a Ficoll-Paque gradient. Decidual and placental tissue were both\ first macroscopically separated. Decidual tissue was then chopped before\ enzymatic dissociation. Placental villi was scraped from the chorionic membrane\ before enzymatic dissociation. Decidual and blood cells were enriched for\ certain populations using an antibody panel prior to Smart-seq2 library\ preparation. Cells from blood decidua and placenta were enriched using FACS\ prior to 10x Genomics v2 library preparation. Smart-seq2 libraries were\ sequenced on an Illumina HiSeq2000. 10x libraries were sequenced on an Illumina\ HiSeq4000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Roser Vento-Tormo, Mirjana Efremova, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\

    \ \ \ singleCell 1 barChartBars 12_+_1_LMP_(12_+_1_PCW) 12+2_LMP(10+2_PCW) 6_GW_/_LMP_(4_PCW) 8_+_2_LMP_(6_+_2_PCW) 9_+_2GW_(7_+_2_PCW) 9+2_GW_/_LMP_(7_PCW) 9+4_LMP(7+4_PCW)\ barChartColors #ed2c3a #ec2f3b #6026c3 #d72835 #a62c71 #6226c0 #bd06b6\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/placentaVentoTormo/10x/Stage.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/placentaVentoTormo/10x/Stage.bb\ defaultLabelFields name\ html placentaVentoTormo\ labelFields name,name2\ longLabel Placenta and decidua cells binned by placental stage 10x from Vento-Tormo et al 2018\ parent placentaVentoTormo\ shortLabel Placenta Stage\ track placentaVentoTormoStage10x\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=placenta-decidua+10x&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ placentaVentoTormo Placenta Vento-Tormo Placenta and decidua cells from from Vento-Tormo et al 2018 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track displays data from Single-cell reconstruction of the early maternal-fetal\ interface in humans. Using droplet-based 10x and plate-based\ Smart-seq2 single cell RNA-sequencing (scRNA-seq) ~70,000 cells were profiled\ from first-trimester placentas with matched decidual cells and maternal\ peripheral blood mononuclear cells (PBMC).

    \ \

    \ This track collection contains nine bar chart tracks of RNA expression in the\ human placenta, decidua, and maternal PBMCs\ where cells are grouped by cell type (Placenta\ Cells, Placenta Cells Ss2), detailed\ cell type (Placenta Detail,\ Placenta Detail Ss2), cell location\ (Placenta Loc,\ Placenta Loc Ss2), stage\ (Placenta Stage), and placenta and\ decidua cells (Placenta Mat/Fet,\ Placenta Mat/Fet Ss2). The default tracks\ displayed are Placenta Cells,\ Placenta Loc,\ Placenta Loc Ss2, and\ Placenta Mat/Fet Ss2.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    muscle
    trophoblast
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Placenta Cells and\ Placenta Cells Ss2\ subtracks, where the bars represent relatively pure cell types. They can give an overview of \ the cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Tissue was collected from 5 placentas (6-14 gestational weeks) and 11 deciduas.\ Additionally, blood was drawn from 6 of the donors (D4-D9) and enriched for\ PBMCs using a Ficoll-Paque gradient. Decidual and placental tissue were both\ first macroscopically separated. Decidual tissue was then chopped before\ enzymatic dissociation. Placental villi was scraped from the chorionic membrane\ before enzymatic dissociation. Decidual and blood cells were enriched for\ certain populations using an antibody panel prior to Smart-seq2 library\ preparation. Cells from blood decidua and placenta were enriched using FACS\ prior to 10x Genomics v2 library preparation. Smart-seq2 libraries were\ sequenced on an Illumina HiSeq2000. 10x libraries were sequenced on an Illumina\ HiSeq4000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Roser Vento-Tormo, Mirjana Efremova, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\

    \ \ \ singleCell 0 group singleCell\ longLabel Placenta and decidua cells from from Vento-Tormo et al 2018\ shortLabel Placenta Vento-Tormo\ superTrack on\ track placentaVentoTormo\ visibility hide\ platinumGenomes Platinum Genomes vcfTabix Platinum genome variants 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ These tracks show high-confidence "Platinum Genome" variant calls for two individuals,\ NA12877 and NA12878, part of a sequenced 17 member pedigree for family number\ 1463, from the Centre d'Etude du Polymorphisme Humain (CEPH). The hybrid\ track displays a merging of the NA12878 results with variant calls produced by Genome in a\ Bottle, discussed further below. CEPH is an international genetic research center that provides\ a resource of immortalized cell cultures used to map genetic markers, and pedigree 1463\ represents a family lineage from Utah of four grandparents, two parents, and 11 children.\ The whole pedigree was sequenced to 50x depth on a HiSeq 2000 Illumina system, which is\ considered a platinum standard, where platinum refers to the quality and completeness of\ the resulting assembly, such as providing full chromosome scaffolds with phasing and\ haplotypes resolved across the entire genome.

    \

    \

    \ This figure depicts the pedigree of the family sequenced for this study, where the ID for each\ sample is defined by adding the prefix NA128 to each numbered individual, so that 77 = NA12877\ and 78 = NA12878, corresponding to the VCF tracks available in this track set. The dark orange\ individuals indicate sequences used in the analysis methods, whereas the blue represent the\ founder generations (grandparents), which were also sequenced and used in validation steps.\ The genomes of the parent-child trio on the top right side, 91-92-78, were also sequenced\ during Phase I of the 1000 Genomes Project.

    \

    \ These tracks represent a comprehensive genome-wide set of phased small variants that have been\ validated to high confidence. Sequencing and phasing a larger pedigree, beyond the two parents\ and one child, increases the ability to detect errors and assess the accuracy of more of the\ variants compared to a standard trio analysis. The genetic inheritance data enables creating a more\ comprehensive catalog of "platinum variants" that reflects both high accuracy and\ completeness. These results are significant as a comprehensive set of valid\ single-nucleotide variants (SNVs) and insertions and deletions (indels),\ in both the easy and difficult parts of the genome, provides a vital resource for software\ developers creating the next generation of variant callers, because these are the areas where\ the current methods most need training data to improve their methods. Since every one of the\ variants in this catalog is phased, this data set provides a resource to better assess emerging\ technologies designed to generate valid phasing information. To generate the calls, six analysis\ pipelines to call SNVs and indels were used and merged into one catalog, where the sensitivity of\ the genetic inheritance aided to detect genotyping errors and maximize the chance of only\ including true variants, that might otherwise be removed by suboptimal filtering. Read more\ about the detailed methods in the referenced paper, further describing this variant catalog\ of 4.7 million SNVs plus 0.7 million small (1-50 bp) indels, that are all consistent with\ the pattern of inheritance in the parents and 11 children of this pedigree.

    \

    \ The hybrid track in this set extends the characterization of NA12878\ by incorporating high confidence calls produced by Genome in a Bottle analysis.\ The resulting merged files contain more comprehensive coverage of variation than either\ set independently, for instance, the hg19 version contains over 80,000 more indels than\ either input set. Read more about the hybrid methods at the following link:\ https://github.com/Illumina/PlatinumGenomes/wiki/Hybrid-truthset

    \ \

    Data Access

    \

    \ The VCF files for this track can be obtained from the download server:\ \ https://hgdownload.soe.ucsc.edu/gbdb/hg38/platinumGenomes/.
    \ These files were obtained from the Platinum genomes source archive:\ https://s3.eu-central-1.amazonaws.com/platinum-genomes/2017-1.0/ReleaseNotes.txt.\

    \ \

    Reference

    \ \

    \ Eberle MA, Fritzilas E, Krusche P, Källberg M, Moore BL, Bekritsky MA, Iqbal Z, Chuang HY,\ Humphray SJ, Halpern AL et al.\ \ A reference data set of 5.4 million phased human variants validated by genetic inheritance from\ sequencing a three-generation 17-member pedigree.\ Genome Res. 2017 Jan;27(1):157-164.\ PMID: 27903644; PMC: PMC5204340\

    \ \ varRep 1 compositeTrack on\ configureByPopup off\ dataVersion Release 2017-1.0\ group varRep\ html ../platinumGenomes\ longLabel Platinum genome variants\ shortLabel Platinum Genomes\ track platinumGenomes\ type vcfTabix\ vcfDoFilter off\ vcfDoMaf off\ genePredArchive Prediction Archive genePred Gene Prediction Archive 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This supertrack is a collection of gene prediction tracks and is composed of the following tracks:\

    \
    \
    AUGUSTUS
    \
    \ shows ab initio predictions from the program\ AUGUSTUS\ (version 3.1). The predictions are based on the genome sequence alone.
    \
    Geneid Genes
    \
    \ shows gene predictions from the\ geneid\ program. Geneid is a program to predict genes in anonymous genomic sequences designed with a\ hierarchical structure.
    \
    Genscan Genes
    \
    \ shows predictions from the\ Genscan\ program. The predictions are based on transcriptional, translational and donor/acceptor\ splicing signals as well as the length and compositional distributions of exons, introns and\ intergenic regions.
    \
    SGP Genes
    \
    \ shows gene predictions from the\ SGP2 homology-based gene\ prediction program. To predict genes in a genomic query, SGP2 combines geneid predictions with\ tblastx comparisons of the genome of the target species against genomic sequences of other\ species (reference genomes) deemed to be at an appropriate evolutionary distance from the\ target.
    \
    SIB Genes
    \
    \ a transcript-based set of gene predictions based on data from RefSeq and\ EMBL/GenBank. The track includes both protein-coding and non-coding transcripts. The coding\ regions are predicted using\ ESTScan.
    \
    \

    \ More information about display conventions, methods, credits, and references can be found on each\ subtrack's description page.

    \ genes 1 cartVersion 2\ group genes\ html ../genePredArchive\ longLabel Gene Prediction Archive\ shortLabel Prediction Archive\ superTrack on\ track genePredArchive\ type genePred\ visibility hide\ problematicSuper Problematic Regions Problematic/special genomic regions for sequencing or very variable regions 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ This container track helps call out sections of the genome that often cause problems or\ confusion when working with the genome. There are three subtracks for now, Anshul Kundaje's\ ENCODE Blacklist, GRC (Genome Reference Consortium) Exclusions, and the UCSC\ Unusual Regions track.\

    \ \

    The hg19 genome has a track with the same name, but with many more\ subtracks, as the GeT-RM and Genome-in-a-Bottle artifact variants do not exist yet\ for hg38, to our knowledge. If you are missing a track here that you know from\ hg19 and have an idea how to add it hg38, do not hesitate to contact us.

    \ \

    \ The Problematic Regions track contains the following subtracks:\

      \
    • \ The UCSC Unusual Regions subtrack contains annotations collected at UCSC, \ put together from other tracks, our experiences and support email list\ requests over the years. For example, it contains the most well-known gene\ clusters (IGH, IGL, PAR1/2, TCRA, TCRB, etc) and annotations for the GRC\ fixed sequences, alternate haplotypes, unplaced\ contigs, pseudo-autosomal regions, and mitochondria. These loci can yield alignments with\ low-quality mapping scores and discordant read pairs, especially for short-read sequencing data.\ This data set was manually curated, based on the Genome Browser's\ assembly description, the FAQs about assembly, and the\ NCBI RefSeq "other" annotations\ track data.\
      • \ \
    • \ The ENCODE Blacklist subtrack contains a comprehensive set of regions which are troublesome\ for high-throughput Next-Generation Sequencing (NGS) aligners. These regions tend to have a very\ high ratio of multi-mapping to unique mapping reads and high variance in mappability due to\ repetitive elements such as satellite, centromeric and telomeric repeats. \
      • \ \
    • \ The GRC Exclusions subtrack contains a set of regions that have been flagged by the GRC to\ contain false duplications or contamination sequences. The GRC has now removed these sequences from\ the files that it uses to generate the reference assembly, however, removing the sequences from the\ GRCh38/hg38 assembly would trigger the next major release of the human assembly. In order to\ help users recognize these regions and avoid them in their analyses, the GRC have produced a masking\ file to be used as a companion to GRCh38, and the BED file is available from the\ GenBank FTP site.\
      • \
    \ \

    \ The Highly Reproducible Regions track highlights regions and variants\ from eight samples that can be used to assess variant detection pipelines. The\ "Highly Reproducible Regions" subtrack comprises the intersection of the reproducible\ regions across all eight samples, while the "Variants" subtracks contain the reproducible\ variants from each assayed sample. Both tracks contain data from the following samples:\

    \
      \
    • a Chinese Quartet, samples CQ-5, CQ-6, CQ-7, CQ-8
      • \
    • a HapMap Trio, samples NA10385, NA12248, NA12249
      • \
    • a Genome in a Bottle sample, NA12878s
      • \
    \ \ Please refer to the Pan et al reference for more information on how\ these regions were defined.\

    \ \

    Display Conventions and Configuration

    \ \

    \ Each track contains a set of regions of varying length with no special configuration options. \ The UCSC Unusual Regions track has a mouse-over description, all other tracks have at most\ a name field, which can be shown in pack mode. The tracks are usually kept in dense mode.\

    \ \

    \ The Hide empty subtracks control hides subtracks with no data in the browser window.\ Changing the browser window by zooming or scrolling may result in the display of a different\ selection of tracks.\

    \ \

    Data access

    \

    \ The raw data can be explored interactively with the Table Browser\ or the Data Integrator.\ \

    \ For automated download and analysis, the genome annotation is stored in bigBed files that\ can be downloaded from\ our download server.\ Individual\ regions or the whole genome annotation can be obtained using our tool bigBedToBed\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool\ can also be used to obtain only features within a given range, e.g. \
    \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/problematic/comments.bb -chrom=chr21 -start=0 -end=100000000 stdout

    \

    \ \

    \

    Methods

    \ \

    \ Files were downloaded from the respective databases and converted to bigBed format.\ The procedure is documented in our\ hg38 makeDoc file.\

    \ \

    Credits

    \

    \ Thanks to Anna Benet-Pagès, Max Haeussler, Angie Hinrichs, Daniel Schmelter, and Jairo\ Navarro at the UCSC Genome Browser for planning, building, and testing these tracks. The\ underlying data comes from the\ ENCODE Blacklist and some parts were copied manually from the HGNC and NCBI\ RefSeq tracks.\

    \ \

    References

    \

    \ Amemiya HM, Kundaje A, Boyle AP.\ \ The ENCODE Blacklist: Identification of Problematic Regions of the Genome.\ Sci Rep. 2019 Jun 27;9(1):9354.\ PMID: 31249361; PMC: PMC6597582\

    \ \

    \ Pan B, Ren L, Onuchic V, Guan M, Kusko R, Bruinsma S, Trigg L, Scherer A, Ning B, Zhang C et\ al.\ \ Assessing reproducibility of inherited variants detected with short-read whole genome\ sequencing.\ Genome Biol. 2022 Jan 3;23(1):2.\ PMID: 34980216; PMC: PMC8722114\

    \ map 0 group map\ html problematic\ longLabel Problematic/special genomic regions for sequencing or very variable regions\ shortLabel Problematic Regions\ superTrack on\ track problematicSuper\ problematic Problematic Regions bigBed 3 + Problematic/special genomic regions for sequencing or very variable regions 3 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ This container track helps call out sections of the genome that often cause problems or\ confusion when working with the genome. There are three subtracks for now, Anshul Kundaje's\ ENCODE Blacklist, GRC (Genome Reference Consortium) Exclusions, and the UCSC\ Unusual Regions track.\

    \ \

    The hg19 genome has a track with the same name, but with many more\ subtracks, as the GeT-RM and Genome-in-a-Bottle artifact variants do not exist yet\ for hg38, to our knowledge. If you are missing a track here that you know from\ hg19 and have an idea how to add it hg38, do not hesitate to contact us.

    \ \

    \ The Problematic Regions track contains the following subtracks:\

      \
    • \ The UCSC Unusual Regions subtrack contains annotations collected at UCSC, \ put together from other tracks, our experiences and support email list\ requests over the years. For example, it contains the most well-known gene\ clusters (IGH, IGL, PAR1/2, TCRA, TCRB, etc) and annotations for the GRC\ fixed sequences, alternate haplotypes, unplaced\ contigs, pseudo-autosomal regions, and mitochondria. These loci can yield alignments with\ low-quality mapping scores and discordant read pairs, especially for short-read sequencing data.\ This data set was manually curated, based on the Genome Browser's\ assembly description, the FAQs about assembly, and the\ NCBI RefSeq "other" annotations\ track data.\
      • \ \
    • \ The ENCODE Blacklist subtrack contains a comprehensive set of regions which are troublesome\ for high-throughput Next-Generation Sequencing (NGS) aligners. These regions tend to have a very\ high ratio of multi-mapping to unique mapping reads and high variance in mappability due to\ repetitive elements such as satellite, centromeric and telomeric repeats. \
      • \ \
    • \ The GRC Exclusions subtrack contains a set of regions that have been flagged by the GRC to\ contain false duplications or contamination sequences. The GRC has now removed these sequences from\ the files that it uses to generate the reference assembly, however, removing the sequences from the\ GRCh38/hg38 assembly would trigger the next major release of the human assembly. In order to\ help users recognize these regions and avoid them in their analyses, the GRC have produced a masking\ file to be used as a companion to GRCh38, and the BED file is available from the\ GenBank FTP site.\
      • \
    \ \

    \ The Highly Reproducible Regions track highlights regions and variants\ from eight samples that can be used to assess variant detection pipelines. The\ "Highly Reproducible Regions" subtrack comprises the intersection of the reproducible\ regions across all eight samples, while the "Variants" subtracks contain the reproducible\ variants from each assayed sample. Both tracks contain data from the following samples:\

    \
      \
    • a Chinese Quartet, samples CQ-5, CQ-6, CQ-7, CQ-8
      • \
    • a HapMap Trio, samples NA10385, NA12248, NA12249
      • \
    • a Genome in a Bottle sample, NA12878s
      • \
    \ \ Please refer to the Pan et al reference for more information on how\ these regions were defined.\

    \ \

    Display Conventions and Configuration

    \ \

    \ Each track contains a set of regions of varying length with no special configuration options. \ The UCSC Unusual Regions track has a mouse-over description, all other tracks have at most\ a name field, which can be shown in pack mode. The tracks are usually kept in dense mode.\

    \ \

    \ The Hide empty subtracks control hides subtracks with no data in the browser window.\ Changing the browser window by zooming or scrolling may result in the display of a different\ selection of tracks.\

    \ \

    Data access

    \

    \ The raw data can be explored interactively with the Table Browser\ or the Data Integrator.\ \

    \ For automated download and analysis, the genome annotation is stored in bigBed files that\ can be downloaded from\ our download server.\ Individual\ regions or the whole genome annotation can be obtained using our tool bigBedToBed\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool\ can also be used to obtain only features within a given range, e.g. \
    \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/problematic/comments.bb -chrom=chr21 -start=0 -end=100000000 stdout

    \

    \ \

    \

    Methods

    \ \

    \ Files were downloaded from the respective databases and converted to bigBed format.\ The procedure is documented in our\ hg38 makeDoc file.\

    \ \

    Credits

    \

    \ Thanks to Anna Benet-Pagès, Max Haeussler, Angie Hinrichs, Daniel Schmelter, and Jairo\ Navarro at the UCSC Genome Browser for planning, building, and testing these tracks. The\ underlying data comes from the\ ENCODE Blacklist and some parts were copied manually from the HGNC and NCBI\ RefSeq tracks.\

    \ \

    References

    \

    \ Amemiya HM, Kundaje A, Boyle AP.\ \ The ENCODE Blacklist: Identification of Problematic Regions of the Genome.\ Sci Rep. 2019 Jun 27;9(1):9354.\ PMID: 31249361; PMC: PMC6597582\

    \ \

    \ Pan B, Ren L, Onuchic V, Guan M, Kusko R, Bruinsma S, Trigg L, Scherer A, Ning B, Zhang C et\ al.\ \ Assessing reproducibility of inherited variants detected with short-read whole genome\ sequencing.\ Genome Biol. 2022 Jan 3;23(1):2.\ PMID: 34980216; PMC: PMC8722114\

    \ map 1 compositeTrack on\ hideEmptySubtracks off\ longLabel Problematic/special genomic regions for sequencing or very variable regions\ parent problematicSuper\ shortLabel Problematic Regions\ track problematic\ type bigBed 3 +\ visibility pack\ hprcArrV1 Rearrangements bigBed 9 + Rearrangements including indels, inversions, and duplications 0 100 0 0 0 100 50 0 0 0 0

    Description

    \ \

    \ This track shows various rearrangements in the HPRC assemblies with respect to hg38. The types include indels, duplications, inversions, and other more complicated \ rearrangements. There are five tracks in the Rearrangement composite track:\ \

      \
    1. Insertions in hg38 with respect to the HPRC genomes\
    2. Deletions in hg38 with respect to the HPRC genomes\
    3. Inversion in hg38 with respect to the HPRC genomes\
    4. Duplications in the HPRC genomes with respect to hg38\
    5. Other Rearrangements: Unalignable sequences in both genomes (inversions, partial transpositions) \
    \ \

    \ \

    Display Conventions

    \

    \ All items are labeled by the number of HPRC assemblies that have the rearrangement. The indel tracks have one or \ two additional fields that specify how large the indel is in base pairs. \ For the Insertions and Deletions track there's only one number with "bp" after it. \ For insertions, it is the size of the insertion in hg38. \ For deletions, it is the size of the sequence deleted in hg38. \ For the Other Rearrangements track, there are two numbers given: the number of unaligned \ bases in hg38 and the number of unaligned bases in the HPRC assemblies.\

    Methods

    \

    \ All these tracks are built from the HPRC chains and nets. \ The actual instructions used to create these tracks are in the files hprcRearrange.txt and hprcInDel.txt.\ The first step for all the tracks is to find the orthologous sequences in each HPRC assembly for each chromosome in hg38. \ These sequences are called the query sequences. For each query sequence, we select the \ longest chain to the hg38 sequence. This is called the orthologous chain. \ Following are the specific methods for each track.\

    Insertions, Deletions, and Others

    \ In each orthologous chain we look for any gaps in either the reference or the query sequence. There are two basic types of gaps. \ One type is when the gap contains no bases in one of the two sequences, but one or more unaligned bases in the other. \ These indicate a standard insertion in one sequence or a deletion in the other. There are also gaps where there are \ unaligned bases in both sequences. These may be alignment errors or sites where more than one rearrangement occurred between the two sequences.\ This type of gap is in the "Other Rearrangements" track.\ This gap identification is done for each of the HPRC assemblies resulting in a set of indels that are clustered based on exact boundaries of the gap in both sequences.\ This kind of clustering often results in indels that "pile up" with a different number of inserted or deleted bases.\

    Inversions and Duplications

    \ For each orthologous chain, we look for any other chain between the same query sequence and the sequence in hg38 that overlaps the orthologous chain.\ Each of those overlaps is determined to be either an inversion or a local duplication in the HPRC genome by\ the chainArrange utility.\ This is done for each of the HPRC assemblies resulting in a set of \ inversion/duplications that are then clustered over all the assemblies. \ The clustering is by simple overlap such that no cluster overlaps any other and is done\ by the chainArrangeCollect utility.\ \

    References

    \ \

    \ Wen-Wei Liao, Mobin Asri, Jana Ebler, ...et al, Heng Lin,\ Benedict Paten\ \ A draft human pangenome reference.\ Nature. 2023 May;617(7960):312-324.\ PMID: 37165242;\ PMC: PMC1017212;\ DOI: 10.1038/s41586-023-05896-x\

    \ \

    \ Glenn Hickey, Jean Monlong, Jana Ebler, Adam M Novak, Jordan M Eizenga,\ Yan Gao; Human Pangenome Reference Consortium; Tobias Marschall, Heng Li,\ Benedict Paten\ \ Pangenome graph construction from genome alignments with Minigraph-Cactus.\ Nature Biotechnology. 2023 May 10. doi: 10.1038/s41587-023-01793-w.\ PMID: 37165083;\ DOI: 10.1038/s41587-023-01793-w\

    \ \

    \ Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q,\ Xie D, Feng S, Stiller J\ et al.\ \ Progressive Cactus is a multiple-genome aligner for the thousand-genome era.\ Nature. 2020 Nov;587(7833):246-251.\ PMID: 33177663;\ PMC: PMC7673649;\ DOI: 10.1038/s41586-020-2871-y\

    \ \

    \ Paten B, Earl D, Nguyen N, Diekhans M, Zerbino D, Haussler D.\ \ Cactus: Algorithms for genome multiple sequence alignment.\ Genome Res. 2011 Sep;21(9):1512-28.\ PMID: 21665927;\ PMC: PMC3166836;\ DOI: 10.1101/gr.123356.111\

    \ \ hprc 1 altColor 100,50,0\ color 0,0,0\ compositeTrack on\ filter.score 1\ filterLabel.score Minimum number of assemblies with arrangement\ group hprc\ longLabel Rearrangements including indels, inversions, and duplications\ priority 100\ shortLabel Rearrangements\ track hprcArrV1\ type bigBed 9 +\ visibility hide\ recombRate2 Recomb Rate bed Recombination rate: Genetic maps from deCODE and 1000 Genomes 0 100 0 130 0 127 192 127 0 0 0

    Description

    \

    \ The recombination rate track represents calculated rates of recombination based\ on the genetic maps from deCODE (Halldorsson et al., 2019) and 1000 Genomes\ (2013 Phase 3 release, lifted from hg19). The deCODE map is more recent, has a higher \ resolution and was natively created on hg38 and therefore recommended. \ For the Recomb. deCODE average track, the recombination rates for chrX represent the female rate.\

    \ \

    This track also includes a subtrack with all the\ individual deCODE recombination events and another subtrack with several thousand\ de-novo mutations found in the deCODE sequencing data. These two tracks are hidden by\ default and have to be switched on explicitly on the configuration page.\

    \ \

    Display Conventions and Configuration

    \

    \ This is a super track that contains different subtracks, three with the deCODE\ recombination rates (paternal, maternal and average) and one with the 1000\ Genomes recombination rate (average). These tracks are in \ signal graph\ (wiggle) format. By default, to show most recombination hotspots, their maximum\ value is set to 100 cM, even though many regions have values higher than 100.\ The maximum value can be changed on the configuration pages of the tracks.\

    \ \

    \ There are two more tracks that show additional details provided by deCODE: one\ subtrack with the raw data of all cross-overs tagged with their proband ID and\ another one with around 8000 human de-novo mutation variants that are linked to\ cross-over changes.\

    \ \

    Methods

    \

    \ The deCODE genetic map was created at \ deCODE Genetics. It is based \ on microarrays assaying 626,828 SNP markers that allowed to identify 1,476,140 crossovers in\ 56,321 paternal meioses and 3,055,395 crossovers in 70,086 maternal meioses.\ In total, the data is based on 4,531,535 crossovers in 126,427 meioses. By\ using WGS data with 9,305,070 SNPs, the boundaries for 761,981 crossovers were\ refined: 247,942 crossovers in 9423 paternal meioses and 514,039 crossovers in\ 11,750 maternal meioses. The average resolution of the genetic map is 682 base\ pairs (bp): 655 and 708 bp for the paternal and maternal maps, respectively.\

    \ \

    The 1000 Genomes genetic map is based on the IMPUTE genetic map based on 1000 Genomes Phase 3, on hg19 coordinates. It\ was converted to hg38 by Po-Ru Loh at the Broad Institute. After a run of \ liftOver, he post-processed the data to deal with situations in which\ consecutive map locations became much closer/farther after lifting. The\ heuristic used is sufficient for statistical phasing but may not be optimal for\ other analyses. For this reason, and because of its higher resolution, the DeCODE\ map is therefore recommended for hg38.\

    \ \

    As with all other tracks, the data conversion commands and pointers to the\ original data files are documented in the \ makeDoc file of this track.

    \ \

    Data Access

    \

    \ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\

    \ \

    \ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\ or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to a given range, e.g.,\

    \ bigWigToBedGraph -chrom=chr17 -start=45941345 -end=45942345 http://hgdownload.soe.ucsc.edu/gbdb/hg38/recombRate/recombAvg.bw stdout\
    \

    \ \

    \ Please refer to our\ Data Access FAQ\ for more information.\

    \ \

    Credits

    \

    \ This track was produced at UCSC using data that are freely available for\ the deCODE\ and 1000 Genomes genetic maps. Thanks to Po-Ru Loh at the\ Broad Institute for providing the code to lift the hg19 1000 Genomes map data to hg38.\

    \ \

    References

    \

    \ 1000 Genomes Project Consortium., Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA,\ Hurles ME, McVean GA.\ \ A map of human genome variation from population-scale sequencing.\ Nature. 2010 Oct 28;467(7319):1061-73.\ PMID: 20981092; PMC: PMC3042601\

    \ \

    \ Halldorsson BV, Palsson G, Stefansson OA, Jonsson H, Hardarson MT, Eggertsson HP, Gunnarsson B,\ Oddsson A, Halldorsson GH, Zink F et al.\ \ Characterizing mutagenic effects of recombination through a sequence-level genetic map.\ Science. 2019 Jan 25;363(6425).\ PMID: 30679340\

    \ map 1 color 0,130,0\ group map\ longLabel Recombination rate: Genetic maps from deCODE and 1000 Genomes\ shortLabel Recomb Rate\ superTrack on hide\ track recombRate2\ type bed\ visibility hide\ rectumWangCellType Rectum Cells bigBarChart Rectum cells binned by cell type from Wang et al 2020 3 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=human-intestine+rectum&gene=$$

    Description

    \

    \ This track shows data from Single-cell transcriptome analysis reveals differential\ nutrient absorption functions in human intestine. Droplet-based\ single-cell RNA sequencing (scRNA-seq) was used to survey gene expression\ profiles of the epithelium in the human ileum, colon, and rectum. A total of 7\ cell clusters were identified: enterocytes (EC), goblet cells (G), paneth-like\ cells (PLC), enteroendocrine cells (EEC), progenitor cells (PRO),\ transient-amplifying cells (TA) and stem cells (SC).

    \ \

    \ This track collection contains two bar chart tracks of RNA expression in rectum\ cells where cells are grouped by cell type\ (Rectum Cells) or donor\ (Rectum Donor). The default track\ displayed is Rectum Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \
    ColorCell classification
    epithelial
    secretory
    stem cell
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. Note that the Rectum Donor track\ is colored by donor for improved clarity.

    \ \

    Method

    \

    \ Using scRNA-seq, RNA profiles of intestinal epithelial cells were obtained for\ 3,898 cells from two human rectum samples. Tissue samples belonged to two\ female donors diagnosed with Adenocarcinoma age 66 (Rectum-1) and age 50\ (Rectum-2). The healthy intestinal mucous membranes used for each sample were\ cut away from the tumor border in surgically removed rectal tissue.\ Additionally, the intestinal tissues were washed in Hank's balanced salt\ solution (HBSS) to remove mucus, blood cells, and muscle tissue. The sample was\ enriched for epithelial cells through centrifugation before being dissociated\ with Tryple to obtain single-cell suspensions. RNA-seq libraries were prepared\ using 10x Genomics 3' v2 kit and sequenced on an Illumina Hiseq X Ten\ PE150.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Yalong Wang, Wanlu Song, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Luis Nassar. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG.\ \ Single-cell transcriptome analysis reveals differential nutrient absorption functions in human\ intestine.\ J Exp Med. 2020 Feb 3;217(2).\ PMID: 31753849; PMC: PMC7041720\

    \ singleCell 1 barChartBars enteroendocrine_cell enterocyte goblet_cell paneth-like_cell progenitor_cell stem_cell transit-amplifying_cell\ barChartColors #c7d2e5 #0198c0 #0251fc #7197d7 #4d689b #9e9fa2 #949dae\ barChartLimit 1.6\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/rectumWang/cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/rectumWang/cell_type.bb\ defaultLabelFields name\ html rectumWang\ labelFields name,name2\ longLabel Rectum cells binned by cell type from Wang et al 2020\ parent rectumWang\ shortLabel Rectum Cells\ track rectumWangCellType\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=human-intestine+rectum&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility pack\ rectumWangDonor Rectum Donor bigBarChart Rectum cells binned by organ donor from Wang et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=human-intestine+rectum&gene=$$

    Description

    \

    \ This track shows data from Single-cell transcriptome analysis reveals differential\ nutrient absorption functions in human intestine. Droplet-based\ single-cell RNA sequencing (scRNA-seq) was used to survey gene expression\ profiles of the epithelium in the human ileum, colon, and rectum. A total of 7\ cell clusters were identified: enterocytes (EC), goblet cells (G), paneth-like\ cells (PLC), enteroendocrine cells (EEC), progenitor cells (PRO),\ transient-amplifying cells (TA) and stem cells (SC).

    \ \

    \ This track collection contains two bar chart tracks of RNA expression in rectum\ cells where cells are grouped by cell type\ (Rectum Cells) or donor\ (Rectum Donor). The default track\ displayed is Rectum Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \
    ColorCell classification
    epithelial
    secretory
    stem cell
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. Note that the Rectum Donor track\ is colored by donor for improved clarity.

    \ \

    Method

    \

    \ Using scRNA-seq, RNA profiles of intestinal epithelial cells were obtained for\ 3,898 cells from two human rectum samples. Tissue samples belonged to two\ female donors diagnosed with Adenocarcinoma age 66 (Rectum-1) and age 50\ (Rectum-2). The healthy intestinal mucous membranes used for each sample were\ cut away from the tumor border in surgically removed rectal tissue.\ Additionally, the intestinal tissues were washed in Hank's balanced salt\ solution (HBSS) to remove mucus, blood cells, and muscle tissue. The sample was\ enriched for epithelial cells through centrifugation before being dissociated\ with Tryple to obtain single-cell suspensions. RNA-seq libraries were prepared\ using 10x Genomics 3' v2 kit and sequenced on an Illumina Hiseq X Ten\ PE150.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Yalong Wang, Wanlu Song, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Luis Nassar. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG.\ \ Single-cell transcriptome analysis reveals differential nutrient absorption functions in human\ intestine.\ J Exp Med. 2020 Feb 3;217(2).\ PMID: 31753849; PMC: PMC7041720\

    \ singleCell 1 barChartCategoryUrl /gbdb/hg38/bbi/rectumWang/donor.colors\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/rectumWang/donor.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/rectumWang/donor.bb\ defaultLabelFields name\ html rectumWang\ labelFields name,name2\ longLabel Rectum cells binned by organ donor from Wang et al 2020\ parent rectumWang\ shortLabel Rectum Donor\ track rectumWangDonor\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=human-intestine+rectum&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ rectumWang Rectum Wang Rectum single cell sequencing from Wang et al 2020 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track shows data from Single-cell transcriptome analysis reveals differential\ nutrient absorption functions in human intestine. Droplet-based\ single-cell RNA sequencing (scRNA-seq) was used to survey gene expression\ profiles of the epithelium in the human ileum, colon, and rectum. A total of 7\ cell clusters were identified: enterocytes (EC), goblet cells (G), paneth-like\ cells (PLC), enteroendocrine cells (EEC), progenitor cells (PRO),\ transient-amplifying cells (TA) and stem cells (SC).

    \ \

    \ This track collection contains two bar chart tracks of RNA expression in rectum\ cells where cells are grouped by cell type\ (Rectum Cells) or donor\ (Rectum Donor). The default track\ displayed is Rectum Cells.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \
    ColorCell classification
    epithelial
    secretory
    stem cell
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. Note that the Rectum Donor track\ is colored by donor for improved clarity.

    \ \

    Method

    \

    \ Using scRNA-seq, RNA profiles of intestinal epithelial cells were obtained for\ 3,898 cells from two human rectum samples. Tissue samples belonged to two\ female donors diagnosed with Adenocarcinoma age 66 (Rectum-1) and age 50\ (Rectum-2). The healthy intestinal mucous membranes used for each sample were\ cut away from the tumor border in surgically removed rectal tissue.\ Additionally, the intestinal tissues were washed in Hank's balanced salt\ solution (HBSS) to remove mucus, blood cells, and muscle tissue. The sample was\ enriched for epithelial cells through centrifugation before being dissociated\ with Tryple to obtain single-cell suspensions. RNA-seq libraries were prepared\ using 10x Genomics 3' v2 kit and sequenced on an Illumina Hiseq X Ten\ PE150.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Yalong Wang, Wanlu Song, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Luis Nassar. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG.\ \ Single-cell transcriptome analysis reveals differential nutrient absorption functions in human\ intestine.\ J Exp Med. 2020 Feb 3;217(2).\ PMID: 31753849; PMC: PMC7041720\

    \ singleCell 0 group singleCell\ longLabel Rectum single cell sequencing from Wang et al 2020\ shortLabel Rectum Wang\ superTrack on\ track rectumWang\ visibility hide\ ucscToRefSeq RefSeq Acc bed 4 RefSeq Accession 0 100 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/nuccore/$$

    Description

    \

    \ This track associates UCSC Genome Browser chromosome names to accession\ identifiers from the NCBI Reference Sequence Database (RefSeq).\

    \ \

    \ The data were downloaded from the NCBI assembly database.\

    \ \

    Credits

    \

    The data for this track was prepared by\ Hiram Clawson.\ map 1 group map\ longLabel RefSeq Accession\ shortLabel RefSeq Acc\ track ucscToRefSeq\ type bed 4\ url https://www.ncbi.nlm.nih.gov/nuccore/$$\ urlLabel RefSeq accession:\ visibility hide\ refSeqFuncElems RefSeq Func Elems bigBed 9 + NCBI RefSeq Functional Elements 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ NCBI recently announced a new release of\ functional regulatory elements.\ \ NCBI is now providing \ RefSeq and \ Gene\ records for non-genic functional elements that have been described in the literature and are \ experimentally validated. Elements in scope include experimentally-verified gene regulatory \ regions (e.g., enhancers, silencers, locus control regions), known structural elements\ (e.g., insulators, DNase I hypersensitive sites, matrix/scaffold-associated regions), \ well-characterized DNA replication origins, and clinically-significant sites of DNA recombination\ and genomic instability. Priority is given to genomic regions that are implicated in human disease \ or are otherwise of significant interest to the research community. Currently, the scope of this \ project is restricted to human and mouse. The current scope does not include functional elements\ predicted from large-scale epigenomic mapping studies, nor elements based on disease-associated \ variation.

    \ \

    Display Conventions and Configuration

    \

    \ Functional elements are colored by Sequence Ontology (SO) term\ using the same scheme as NCBI's Genome Data Viewer:\

      \
    • Regulatory elements\ (items labeled by INSDC regulatory class)\
    • Protein binding sites\ (items labeled by bound moiety)\
    • Mobile elements\
    • Recombination features\
    • Sequence features\
    • Other\
    \

    \ \

    Methods

    \

    \ NCBI manually curated features in accordance with International Nucleotide \ Sequence Database Collaboration (INSDC) standards. Features that are supported by direct \ experimental evidence include at least one experiment qualifier with an evidence code (ECO ID) \ from the Evidence and Conclusion Ontology, and at least one citation from PubMed. Currently\ 971 distinct PubMed citations are included in this track. \

    \ \

    Contact

    \

    \ This track was made with assistance from\ Terence Murphy at NCBI.

    \ \

    Data access

    \

    \ The raw data can be explored interactively with the Table Browser, or the Data Integrator. For automated analysis, the data may be \ queried from our REST API,\ and the genome annotations are stored in files that can be downloaded from our \ download server, with more information available on\ our blog.

    \ \

    New Version Available

    \

    \ Several new enhancements to the RefSeq Functional Elements dataset are available as a Public Hub.\ The hub can be found on the Public Hub page.\ The track hub was prepared by Dr. Catherine M. Farrell, NCBI/NLM/NIH with further insights discussed\ in a related NCBI blog post.

    \ \

    References

    \

    \ Pruitt KD, Brown GR, Hiatt SM, Thibaud-Nissen F, Astashyn A, Ermolaeva O, Farrell CM, Hart J,\ Landrum MJ, McGarvey KM et al.\ RefSeq: an update on mammalian reference sequences.\ Nucleic Acids Res. 2014 Jan;42(Database issue):D756-63.\ PMID: 24259432; PMC: PMC3965018\

    \ \

    \ Pruitt KD, Tatusova T, Maglott DR.\ NCBI Reference Sequence (RefSeq): a curated non-redundant\ sequence database of genomes, transcripts and proteins.\ Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.\ PMID: 15608248; PMC: PMC539979\

    \ regulation 1 bigDataUrl /gbdb/hg38/ncbiRefSeq/refSeqFuncElems.bb\ group regulation\ itemRgb on\ longLabel NCBI RefSeq Functional Elements\ mouseOverField _mouseOver\ noScoreFilter .\ shortLabel RefSeq Func Elems\ track refSeqFuncElems\ type bigBed 9 +\ urls geneIds=https://www.ncbi.nlm.nih.gov/gene?cmd=Retrieve&dopt=full_report&list_uids=$$ pubMedIds=https://www.ncbi.nlm.nih.gov/pubmed/$$ soTerm=http://www.sequenceontology.org/browser/obob.cgi?rm=term_list&release=current_svn&obo_query=$$\ ghGeneHancer Reg Elem bigBed 9 + GeneHancer Regulatory Elements and Gene Interactions 1 100 0 0 0 127 127 127 0 0 0 http://www.genecards.org/Search/Keyword?queryString=$$ regulation 1 exonArrows off\ itemRgb on\ longLabel GeneHancer Regulatory Elements and Gene Interactions\ mouseOverField elementType\ parent geneHancer\ searchIndex name\ shortLabel Reg Elem\ track ghGeneHancer\ type bigBed 9 +\ url http://www.genecards.org/Search/Keyword?queryString=$$\ urlLabel In GeneCards:\ view a_GH\ visibility dense\ ReMap ReMap ChIP-seq bigBed 9 + ReMap Atlas of Regulatory Regions 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track represents the ReMap Atlas of regulatory regions, which consists of a\ large-scale integrative analysis of all Public ChIP-seq data for transcriptional\ regulators from GEO, ArrayExpress, and ENCODE. \

    \ \

    \ Below is a schematic diagram of the types of regulatory regions: \

      \
    • ReMap 2022 Atlas (all peaks for each analyzed data set)
      • \
    • ReMap 2022 Non-redundant peaks (merged similar target)
      • \
    • ReMap 2022 Cis Regulatory Modules
      • \
    \

    \ \ \ \

    Display Conventions and Configuration

    \
      \
    • \ Each transcription factor follows a specific RGB color.\
      • \
    • \ ChIP-seq peak summits are represented by vertical bars.\
      • \
    • \ Hsap: A data set is defined as a ChIP/Exo-seq experiment in a given\ GEO/ArrayExpress/ENCODE series (e.g. GSE41561), for a given TF (e.g. ESR1), in\ a particular biological condition (e.g. MCF-7).\
      Data sets are labeled with the concatenation of these three pieces of\ information (e.g. GSE41561.ESR1.MCF-7).\
      • \
    • \ Atha: The data set is defined as a ChIP-seq experiment in a given series\ (e.g. GSE94486), for a given target (e.g. ARR1), in a particular biological\ condition (i.e. ecotype, tissue type, experimental conditions; e.g.\ Col-0_seedling_3d-6BA-4h).\
      Data sets are labeled with the concatenation of these three pieces of\ information (e.g. GSE94486.ARR1.Col-0_seedling_3d-6BA-4h).\
      • \
    \ \

    Methods

    \

    \ This 4th release of ReMap (2022) presents the analysis of a total of 8,103 \ quality controlled ChIP-seq (n=7,895) and ChIP-exo (n=208) data sets from public\ sources (GEO, ArrayExpress, ENCODE). The ChIP-seq/exo data sets have been mapped\ to the GRCh38/hg38 human assembly. The data set is defined as a ChIP-seq \ experiment in a given series (e.g. GSE46237), for a given TF (e.g. NR2C2), in a\ particular biological condition (i.e. cell line, tissue type, disease state, or\ experimental conditions; e.g. HELA). Data sets were labeled by concatenating\ these three pieces of information, such as GSE46237.NR2C2.HELA. \ \

    \

    Those merged analyses cover a total of 1,211 DNA-binding proteins\ (transcriptional regulators) such as a variety of transcription factors (TFs),\ transcription co-activators (TCFs), and chromatin-remodeling factors (CRFs) for\ 182 million peaks. \

    \ \ \ \

    GEO & ArrayExpress

    \

    \ Public ChIP-seq data sets were extracted from Gene Expression Omnibus (GEO) and\ ArrayExpress (AE) databases. For GEO, the query\ \ '('chip seq' OR 'chipseq' OR\ 'chip sequencing') AND 'Genome binding/occupancy profiling by high throughput\ sequencing' AND 'homo sapiens'[organism] AND NOT 'ENCODE'[project]'\ \ was used to return a list of all potential data sets to analyze, which were then manually \ assessed for further analyses. Data sets involving polymerases (i.e. Pol2 and\ Pol3), and some mutated or fused TFs (e.g. KAP1 N/C terminal mutation, GSE27929)\ were excluded.\

    \ \

    ENCODE

    \

    \ Available ENCODE ChIP-seq data sets for transcriptional regulators from the\ ENCODE portal were processed with the\ standardized ReMap pipeline. The list of ENCODE data was retrieved as FASTQ files from the\ ENCODE portal\ using the following filters:\

      \
    • Assay: "ChIP-seq"
      • \
    • Organism: "Homo sapiens"
      • \
    • Target of assay: "transcription factor"
      • \
    • Available data: "fastq" on 2016 June 21st
      • \
    \ Metadata information in JSON format and FASTQ files\ were retrieved using the Python requests module.\

    \ \

    ChIP-seq processing

    \

    \ Both Public and ENCODE data were processed similarly. Bowtie 2 (PMC3322381) (version 2.2.9) with options -end-to-end -sensitive was used to align all\ reads on the genome. Biological and technical\ replicates for each unique combination of GSE/TF/Cell type or Biological condition\ were used for peak calling. TFBS were identified using MACS2 peak-calling tool\ (PMC3120977) (version 2.1.1.2) in order to follow ENCODE ChIP-seq guidelines,\ with stringent thresholds (MACS2 default thresholds, p-value: 1e-5). An input data\ set was used when available.\

    \ \ \

    Quality assessment

    \

    \ To assess the quality of public data sets, a score was computed based on the\ cross-correlation and the FRiP (fraction of reads in peaks) metrics developed by\ the ENCODE Consortium (https://genome.ucsc.edu/ENCODE/qualityMetrics.html). Two\ thresholds were defined for each of the two cross-correlation ratios (NSC,\ normalized strand coefficient: 1.05 and 1.10; RSC, relative strand coefficient:\ 0.8 and 1.0). Detailed descriptions of the ENCODE quality coefficients can be\ found at https://genome.ucsc.edu/ENCODE/qualityMetrics.html. The\ phantompeak tools suite was used\ (https://code.google.com/p/phantompeakqualtools/) to compute\ RSC and NSC.\

    \

    \ Please refer to the ReMap 2022, 2020, and 2018 publications for more details\ (citation below).\

    \ \ \ \

    Data Access

    \

    \ ReMap Atlas of regulatory regions data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

    \ \

    \ Individual BED files for specific TFs, cells/biotypes, or data sets can be\ found and downloaded on the ReMap website.\

    \ \

    References

    \ \

    \ Chèneby J, Gheorghe M, Artufel M, Mathelier A, Ballester B.\ \ ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-\ seq experiments.\ Nucleic Acids Res. 2018 Jan 4;46(D1):D267-D275.\ PMID: 29126285; PMC: PMC5753247\

    \

    \ Chèneby J, Ménétrier Z, Mestdagh M, Rosnet T, Douida A, Rhalloussi W, Bergon A, Lopez\ F, Ballester B.\ \ ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis\ DNA-binding sequencing experiments.\ Nucleic Acids Res. 2020 Jan 8;48(D1):D180-D188.\ PMID: 31665499; PMC: PMC7145625\

    \

    \ Griffon A, Barbier Q, Dalino J, van Helden J, Spicuglia S, Ballester B.\ \ Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory\ landscape.\ Nucleic Acids Res. 2015 Feb 27;43(4):e27.\ PMID: 25477382; PMC: PMC4344487\

    \

    \ Hammal F, de Langen P, Bergon A, Lopez F, Ballester B.\ \ ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an\ integrative analysis of DNA-binding sequencing experiments.\ Nucleic Acids Res. 2022 Jan 7;50(D1):D316-D325.\ PMID: 34751401; PMC: PMC8728178\

    \ \ regulation 1 compositeTrack on\ group regulation\ html ../reMap\ longLabel ReMap Atlas of Regulatory Regions\ noParentConfig on\ noScoreFilter on\ shortLabel ReMap ChIP-seq\ track ReMap\ type bigBed 9 +\ visibility hide\ ucscRetroAli9 RetroGenes V9 psl Retroposed Genes V9, Including Pseudogenes 0 100 20 0 250 137 127 252 0 0 0

    Description

    \ \

    \ Retrotransposition is a process involving the copying of DNA by a group of\ enzymes that have the ability to reverse transcribe spliced mRNAs, and the \ insertion of these processed mRNAs back into the genome resulting\ in single-exon copies of genes and sometime chimeric genes. Retrogenes are \ mostly non-functional pseudogenes but some are functional genes that have \ acquired a promoter from a neighboring gene, or transcribed pseudogenes, and \ some are anti-sense transcripts that may impede mRNA translation.\

    \ \

    Methods

    \ \

    \ All mRNAs of a species from GenBank were aligned to the genome using\ lastz\ (Miller lab, Pennsylvania State University). mRNAs that aligned twice in the genome\ (once with introns and once without introns) were initially screened. Next, a series\ of features were scored to determine candidates for retrotransposition events. \ These features included position and length of the polyA tail, percent coverage of the \ retrogene alignment to the parent, degree of synteny with mouse, coverage of repetitive \ elements, number of exons that can still be aligned to the retrogene, number of putative \ introns removed at the retrogene locus and degree of divergence from the parent gene.\ Retrogenes were classified using a threshold score function that is a linear combination \ of this set of features.\ Retrogenes in the final set were selected using a score threshold based on a ROC plot\ against the Vega annotated\ pseudogenes.\

    \ \

    Retrogene Statistics table:

    \ \
      \
    • Expression of Retrogene: The following values are possible where\ those that are not expressed are classed as pseudogene or\ mrna:
      • \
        \
      • pseudogene indicates that the parent gene has been annotated\ by one of NCBI's RefSeq, UCSC Genes or Mammalian Gene Collection (MGC).
        • \
      • mrna indicates that the parent gene is a spliced mrna that\ has no annotation in NCBI's RefSeq, UCSC Genes or Mammalian Gene Collection\ (MGC). Therefore, the retrogene is a product of a potentially non-annotated\ parent gene and is a putative pseudogene of that putative parent gene.
        • \
      • expressed weak indicates that there is a mRNA overlapping\ the retrogene, indicating possible transcription. noOrf indicates\ that an ORF was not identified by BESTORF.
        • \
      • expressed indicates that there is a medium level of mRNAs/ESTs\ mapping to the retrogene locus, indicating possible transcription.
        • \
      • expressed strong indicates that there is a mRNA overlapping\ the retrogene, and at least five spliced ESTs indicating probable transcription.\ noOrf indicates that an ORF was not identified by BESTORF.
        • \
      • expressed shuffle indicates that the retrogene was inserted into\ a pre-existing annotated gene.
        • \
      \
    • Score: Weighted sum of features (mentioned above) of the potential retrogene.
      • \
    • Percent Gene Alignment Coverage (Bases Matching Parent): Shows\ the percentage of the parent gene aligning to this region.
      • \
    • Intron Count: Number of introns is the number of gaps in\ the alignment between the parent mRNA and the genome where gaps are >80 bp and\ the ratio of the mRNA alignment gap to the genome alignment gap is less than\ 30% after removing repeats.
      • \
    • Gap Count: Numer of gaps in the alignment of between the parent\ mRNA and the genome after removing repeats. Gaps are not counted if the gap on\ the mRNA side of the alignment is a similar size to the gap in the genome\ alignment.
      • \
    • BESTORF Score:\ BESTORF (written by Victor Solovyev) predicts potential open reading\ frames (ORFs) in mRNAs/ESTs with very high accuracy using a Markov chain model of coding\ regions and a probabilistic model of translation start codon potential. The score\ threshold for finding an ORF is 50 (Jim Kent, personal communication).
      • \
    \ \

    Break in Orthology table:

    \ \

    \ Retrogenes inserted into the genome since the mouse/human divergence show a break\ in the human genome syntenic net alignments to the mouse genome. A break in orthology score is \ calculated and weighted before contributing to the final retrogene score. The break in orthology score\ ranges from 0-130 and it represents the portion of the genome that is missing in each species relative\ to the reference genome (human hg38) at the retrogene locus as defined by syntenic\ alignment nets. If the score is 0, there is orthologous DNA and no break in ortholog with the other species; this \ could be an ancient retrogene; duplicated pseudogenes may also score low because they are often generated \ via large segmental duplication events so the size of the pseudogene is small relative to the size of the \ inserted duplicated sequence. Scores greater than 100 represent cases where the retrogene alignment has no \ flanking alignment resulting from an ancient insertion or other complex rearrangement.\

    \

    \ Breaks in orthology with human and dog tend to be due to genomic\ insertions in the rodent lineage so sequence gaps are not treated as orthology breaks. \ Relative orthology of human/mouse and dog/mouse nets are used to avoid false positives due to deletions \ in the human genome. Since older retrogenes will not show a break in orthology, this feature is \ weighted lower than other features when scoring putative retrogenes.\

    \ \

    Credits

    \ \

    \ The RetroFinder program and browser track were developed by\ Robert Baertsch at UCSC.\

    \ \ \

    References

    \ \

    \ Baertsch R, Diekhans M, Kent WJ, Haussler D, Brosius J.\ \ Retrocopy contributions to the evolution of the human genome.\ BMC Genomics. 2008 Oct 8;9:466.\ PMID: 18842134; PMC: PMC2584115\

    \ \

    \ Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\ \ Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes.\ Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9.\ PMID: 14500911; PMC: PMC208784\

    \ \

    \ Pei B, Sisu C, Frankish A, Howald C, Habegger L, Mu XJ, Harte R, Balasubramanian S, Tanzer A,\ Diekhans M et al.\ \ The GENCODE pseudogene resource.\ Genome Biol. 2012 Sep 26;13(9):R51.\ PMID: 22951037; PMC: PMC3491395\

    \ \

    \ Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC, Haussler D, Miller W.\ \ Human-mouse alignments with BLASTZ.\ Genome Res. 2003 Jan;13(1):103-7.\ PMID: 12529312; PMC: PMC430961\

    \ \

    \ Zheng D, Frankish A, Baertsch R, Kapranov P, Reymond A, Choo SW, Lu Y, Denoeud F, Antonarakis SE,\ Snyder M et al.\ \ Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and\ evolution.\ Genome Res. 2007 Jun;17(6):839-51.\ PMID: 17568002; PMC: PMC1891343\

    \ genes 1 baseColorDefault diffCodons\ baseColorUseCds table ucscRetroCds9\ baseColorUseSequence extFile ucscRetroSeq9 ucscRetroExtFile9\ color 20,0,250\ dataVersion Jan. 2015\ exonNumbers off\ group genes\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Retroposed Genes V9, Including Pseudogenes\ shortLabel RetroGenes V9\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ track ucscRetroAli9\ type psl\ ucscRetroInfo ucscRetroInfo9\ visibility hide\ revel REVEL Scores bigWig REVEL Pathogenicity Score for single-base coding mutations (zoom for exact score) 0 100 150 80 200 202 167 227 0 0 0

    Description

    \ \

    This track collection shows Rare Exome Variant Ensemble Learner (REVEL) scores for predicting\ the deleteriousness of each nucleotide change in the genome.\

    \ \

    \ REVEL is an ensemble method for predicting the pathogenicity of missense variants \ based on a combination of scores from 13 individual tools: MutPred, FATHMM v2.3, \ VEST 3.0, PolyPhen-2, SIFT, PROVEAN, MutationAssessor, MutationTaster, LRT, GERP++, \ SiPhy, phyloP, and phastCons. REVEL was trained using recently discovered pathogenic \ and rare neutral missense variants, excluding those previously used to train its \ constituent tools. The REVEL score for an individual missense variant can range \ from 0 to 1, with higher scores reflecting greater likelihood that the variant is \ disease-causing. \

    \ \

    Most authors of deleteriousness scores argue against using fixed cutoffs in\ diagnostics. But to give an idea of the meaning of the score value, the REVEL\ authors note: "For example, 75.4% of disease mutations but only 10.9% of\ neutral variants (and 12.4% of all ESVs) have a REVEL score above 0.5,\ corresponding to a sensitivity of 0.754 and specificity of 0.891. Selecting a\ more stringent REVEL score threshold of 0.75 would result in higher specificity\ but lower sensitivity, with 52.1% of disease mutations, 3.3% of neutral\ variants, and 4.1% of all ESVs being classified as pathogenic". (Figure S1 of\ the reference below)\

    \ \

    Display Conventions and Configuration

    \

    \ There are five subtracks for this track:\

      \
    • \

      Four lettered subtracks, one for every nucleotide, showing\ scores for mutation from the reference to that\ nucleotide. All subtracks show the REVEL ensemble score on mouseover. Across the exome, \ there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing\ the reference allele, e.g. A to A, is always set to zero, "0.0". REVEL only\ takes into account amino acid changes, so a nucleotide change that results in no\ amino acid change (synonymous) also receives the score "0.0". \

      \ In rare cases, two scores are output for the same variant at a \ genome position. This happens when there are two transcripts with\ different splicing patterns and since some input scores for REVEL take into account\ the sequence context, the same mutation can get two different scores. In these cases,\ only the maximum score is shown in the four per-nucleotide subtracks. The complete set of \ scores are shown in the Overlaps track.\

      \ \
    • \

      One subtrack, Overlaps, shows alternate REVEL scores when applicable. \ In rare cases (0.05% of genome positions), multiple scores exist with a single variant, \ due to multiple, overlapping transcripts. For example, if there are \ two transcripts and one covers only half of an exon, then the amino acids\ that overlap both transcripts will get two different REVEL scores, since some of the underlying \ scores (polyPhen for example) take into account the amino acid sequence context and \ this context is different depending on the transcript.\ For these cases, this subtrack contains at least two\ graphical features, for each affected genome position. Each feature is labeled\ with the mutation (A, C, T or G). The transcript IDs and resulting score is \ shown when hovering over the feature or clicking\ it. For the large majority of the genome, this subtrack has no features.\ This is because REVEL usually outputs only a single score per nucleotide and \ most transcript-derived amino acid sequence contexts are identical.\

      \

      \ Note that in most diagnostic assays, variants are called using WGS\ pipelines, not RNA-seq. As a result, variants are originally located on the\ genome, not on transcripts, and the choice of transcript is made by\ a variant calling software using a heuristic. In addition, clinically, in the\ field, some transcripts have been agreed-on as more relevant for a disease, e.g.\ because only certain transcripts may be expressed in the relevant tissue. So\ the choice of the most relevant transcript, and as such the REVEL score, may be\ a question of manual curation standards rather than a result of the variant itself.\

      \
    \ \

    \ When using this track, zoom in until you can see every basepair at the\ top of the display. Otherwise, there are several nucleotides per pixel under \ your mouse cursor and no score will be shown on the mouseover tooltip.\

    \ \

    For hg38, note that the data was converted from the hg19 data using the UCSC\ liftOver program, by the REVEL authors. This can lead to missing values or\ duplicated values. When a hg38 position is annotated with two scores due to the\ lifting, the authors removed all the scores for this position. They did the same when\ the reference allele has changed from hg19 to hg38. Also, on hg38, the track has\ the "lifted" icon to indicate\ this. You can double-check if a nucleotide\ position is possibly affected by the lifting procedure by activating the track\ "Hg19 Mapping" under "Mapping and Sequencing".\

    \ \

    Data access

    \

    \ REVEL scores are available at the \ \ REVEL website. \ The site provides precomputed REVEL scores for all possible human missense variants \ to facilitate the identification of pathogenic variants among the large number of \ rare variants discovered in sequencing studies.\ \

    \ \

    \ The REVEL data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig\ files that can be downloaded from\ our download server.\ The files for this track are called a.bw, c.bw, g.bw, t.bw. Individual\ regions or the whole genome annotation can be obtained using our tool bigWigToWig\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tools can also be used to obtain features confined to given range, e.g.\
     \
    \ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/revel/a.bw stdout\
    \ \

    Methods

    \ \

    \ Data were converted from the files provided on\ the REVEL Downloads website. As with all other tracks,\ a full log of all commands used for the conversion is available in our \ source repository, for hg19 and hg38. The release used for each assembly is shown on the track description page.\ \

    \ \

    Credits

    \

    \ Thanks to the REVEL development team for providing precomputed data and fixing duplicated values in the hg38 files.\

    \ \

    References

    \

    \ Ioannidis NM, Rothstein JH, Pejaver V, Middha S, McDonnell SK, Baheti S, \ Musolf A, Li Q, Holzinger E, Karyadi D, et al.\ \ REVEL: An Ensemble Method for Predicting the Pathogenicity of Rare Missense Variants\ Am J Hum Genet. 2016 Oct 6;99(4):877-885.\ PMID: 27666373;\ PMC: PMC5065685\

    \ \ phenDis 0 color 150,80,200\ compositeTrack on\ dataVersion /gbdb/$D/revel/version.txt\ group phenDis\ longLabel REVEL Pathogenicity Score for single-base coding mutations (zoom for exact score)\ origAssembly hg19\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel REVEL Scores\ track revel\ type bigWig\ visibility hide\ scaffolds Scaffolds bed 4 . GRCh38 Defined Scaffold Identifiers 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ This track shows the Genome Reference Consortium (GRC) names for the \ scaffolds in the GRCh38 (hg38) assembly, downloaded from the GRCh38\ acc2name file in GenBank. \

    \ map 1 color 0,0,0\ group map\ longLabel GRCh38 Defined Scaffold Identifiers\ shortLabel Scaffolds\ track scaffolds\ type bed 4 .\ visibility hide\ sgpGene SGP Genes genePred sgpPep SGP Gene Predictions Using Mouse/Human Homology 0 100 0 90 100 127 172 177 0 0 0

    Description

    \ \ This track shows gene predictions from the\ SGP2\ homology-based gene prediction program developed by Roderic Guigó's\ "Computational Biology of RNA Processing"\ group, which is part of the Centre de Regulació Genòmica\ (CRG) in Barcelona, Catalunya, Spain. To predict\ genes in a genomic query, SGP2 combines geneid predictions with tblastx\ comparisons of the genome of the target species against genomic sequences\ of other species (reference genomes) deemed to be at an appropriate\ evolutionary distance from the target.\ \

    Credits

    \ \ Thanks to the\ "Computational Biology of RNA Processing"\ group for providing these data.\ genes 1 color 0,90,100\ group genes\ html ../../sgpGene\ longLabel SGP Gene Predictions Using Mouse/Human Homology\ parent genePredArchive\ shortLabel SGP Genes\ track sgpGene\ type genePred sgpPep\ visibility hide\ hprcVCF Short Variants Short Variants 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ This track shows short nucleotide variants of a few base pairs when aligning\ HPRC genomes to the hg38 reference assembly. The alignment was made with the\ Minigraph-cactus approach described in the references below.\

    \ \

    There are three subtracks in this superTrack:\

      \
    1. All short variants up to 50bp, without any length filter\
    2. All short variants <= 3 bp long\
    3. All short variants > 3 bp long\

    \ \

    \ VCF Decomposition from\ HPRC Pangenome Resources Github:\ "The Raw VCF files contain a site for each bubble in the graph. Nested bubbles will result in\ overlapping sites. The nesting relationships are denoted with the PS (parent snarl), LV (level) and\ AT (allele traversal) tags and need to be taken into account when interpreting the VCF.\ Alternatively, you can use the 'Decomposed VCFs' which have been normalized by using\ vcfbub to 'pop'\ bubbles with alleles larger than 100k and\ vcfwave\ to realign each alt\ (script). Note that in order to reproduce the PanGenie analyses from the papers, you should instead\ use the\ PanGenie HPRC Workflow. This workflow has a\ CHM13 branch to use when working with that reference.\

    \ The exact tools and commands used to produce the VCFs are given\ here."

    \ \

    Display Conventions and Configuration

    \

    \ The Name of the items are the pair of node labels that denote the site's location\ in the graph, with the '>' and '<' denoting the forward and reverse\ orientation of the node. Mouseover on items in "squish" and "pack" modes shows the items Name and\ Genotypes. Mouseover on items in "full" mode shows Alleles.\ \

    Methods

    \

    \ The Minigraph-Cactus HPRC v1.0 graph was converted to VCF using vg deconstruct.\ This result was further postprocessed using vcfbub to flatten nested sites then\ vcfwave to normalize by realigning alt alleles to the reference. All steps are\ described in Hickey et al 2023. The postprocessing command lines and data can be found on\ Github.\ Finally, the resulting VCF was filtered by length and split into two VCFs using a cutoff of 3bp.\

    \ \

    Credits

    \

    \ Thanks to Glenn Hickey for providing the HAL file from the HPRC project and for making these VCFs from them.\

    \ \

    References

    \

    \ Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q,\ Xie D, Feng S, Stiller J\ et al.\ \ Progressive Cactus is a multiple-genome aligner for the thousand-genome era.\ Nature. 2020 Nov;587(7833):246-251.\ PMID: 33177663;\ PMC: PMC7673649;\ DOI: 10.1038/s41586-020-2871-y\

    \ \

    \ Glenn Hickey, Jean Monlong, Jana Ebler, Adam M Novak, Jordan M Eizenga,\ Yan Gao; Human Pangenome Reference Consortium; Tobias Marschall, Heng Li,\ Benedict Paten\ \ Pangenome graph construction from genome alignments with Minigraph-Cactus.\ Nature Biotechnology. 2023 May 10. doi: 10.1038/s41587-023-01793-w.\ PMID: 37165083;\ DOI: 10.1038/s41587-023-01793-w\

    \ \

    \ Paten B, Earl D, Nguyen N, Diekhans M, Zerbino D, Haussler D.\ \ Cactus: Algorithms for genome multiple sequence alignment.\ Genome Res. 2011 Sep;21(9):1512-28.\ PMID: 21665927;\ PMC: PMC3166836;\ DOI: 10.1101/gr.123356.111\

    \ \

    \ Wen-Wei Liao, Mobin Asri, Jana Ebler, ...et al, Heng Lin,\ Benedict Paten\ \ A draft human pangenome reference.\ Nature. 2023 May;617(7960):312-324.\ PMID: 37165242;\ PMC: PMC1017212;\ DOI: 10.1038/s41586-023-05896-x\

    \ hprc 0 group hprc\ html hprcVCF\ longLabel Short Variants\ shortLabel Short Variants\ superTrack on\ track hprcVCF\ sibTxGraph SIB Alt-Splicing altGraphX Alternative Splicing Graph from Swiss Institute of Bioinformatics 0 100 0 0 0 127 127 127 0 0 0 http://ccg.vital-it.ch/cgi-bin/tromer/tromergraph2draw.pl?db=hg38&species=H.+sapiens&tromer=$$

    Description

    \

    \ This track shows the graphs constructed by analyzing experimental RNA\ transcripts and serves as basis for the predicted alternative splicing\ transcripts shown in the SIB Genes track. The blocks represent exons; lines\ indicate introns. The graphical display is drawn such that no exons\ overlap, making alternative events easier to view when the track is in full\ display mode and the resolution is set to approximately gene-level.

    \

    Further information on the graphs can be found on the\ Transcriptome \ Web interface.

    \ \

    Methods

    \

    \ The splicing graphs were generated using a multi-step pipeline: \

      \
    1. RefSeq and GenBank RNAs and ESTs are aligned to the genome with\ SIBsim4, keeping \ only the best alignments for each RNA.\
    2. Alignments are broken up at non-intronic gaps, with small isolated \ fragments thrown out.\
    3. A splicing graph is created for each set of overlapping alignments. This\ graph has an edge for each exon or intron, and a vertex for each splice site,\ start, and end. Each RNA that contributes to an edge is kept as evidence for\ that edge.\
    4. Graphs consisting solely of unspliced ESTs are discarded.\

    \ \

    Credits

    \

    \ The SIB Alternative Splicing Graphs track was produced on the Vital-IT high-performance \ computing platform\ using a computational pipeline developed by Christian Iseli with help from\ colleagues at the Ludwig \ Institute for Cancer\ Research and the Swiss \ Institute of Bioinformatics. It is based on data from NCBI RefSeq and GenBank/EMBL. Our\ thanks to the people running these databases and to the scientists worldwide\ who have made contributions to them.

    \ rna 1 group rna\ idInUrlSql select name from sibTxGraph where id=%s\ longLabel Alternative Splicing Graph from Swiss Institute of Bioinformatics\ shortLabel SIB Alt-Splicing\ track sibTxGraph\ type altGraphX\ url http://ccg.vital-it.ch/cgi-bin/tromer/tromergraph2draw.pl?db=hg38&species=H.+sapiens&tromer=$$\ urlLabel SIB link:\ visibility hide\ sibGene SIB Genes genePred Swiss Institute of Bioinformatics Gene Predictions from mRNA and ESTs 0 100 195 90 0 225 172 127 0 0 0 http://ccg.vital-it.ch/cgi-bin/tromer/tromer_quick_search_internal.pl?db=hg38&query_str=$$

    Description

    \

    \ The SIB Genes track is a transcript-based set of gene predictions based\ on data from RefSeq and EMBL/GenBank. Genes all have the support of at\ least one GenBank full length RNA sequence, one RefSeq RNA, or one spliced\ EST. The track includes both protein-coding and non-coding transcripts.\ The coding regions are predicted using\ ESTScan.

    \ \

    Display Conventions and Configuration

    \

    \ This track in general follows the display conventions for\ gene prediction\ tracks. The exons for putative non-coding genes and untranslated regions \ are represented by relatively thin blocks while those for coding open \ reading frames are thicker.

    \

    \ This track contains an optional codon coloring\ feature that allows users to quickly validate and compare gene predictions.\ To display codon colors, select the genomic codons option from the\ Color track by codons pull-down menu. Go to the\ Coloring Gene Predictions and\ Annotations by Codon page for more information about this feature.

    \

    Further information on the predicted transcripts can be found on the\ Transcriptome Web\ interface.

    \ \ \

    Methods

    \

    \ The SIB Genes are built using a multi-step pipeline: \

      \
    1. RefSeq and GenBank RNAs and ESTs are aligned to the genome with\ SIBsim4, keeping \ only the best alignments for each RNA.\
    2. Alignments are broken up at non-intronic gaps, with small isolated \ fragments thrown out.\
    3. A splicing graph is created for each set of overlapping alignments. This\ graph has an edge for each exon or intron, and a vertex for each splice site,\ start, and end. Each RNA that contributes to an edge is kept as evidence for\ that edge.\
    4. The graph is traversed to generate all unique transcripts. The traversal is \ guided by the initial RNAs to avoid a combinatorial explosion in alternative \ splicing.\
    5. Protein predictions are generated.\
    \ \

    Credits

    \

    \ The SIB Genes track was produced on the Vital-IT high-performance \ computing platform\ using a computational pipeline developed by Christian Iseli with help from\ colleagues at the Ludwig Institute\ for Cancer\ Research and the Swiss Institute \ of Bioinformatics. It is based on data from NCBI RefSeq and GenBank/EMBL. Our\ thanks to the people running these databases and to the scientists worldwide\ who have made contributions to them.

    \ \

    References

    \

    \ Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.\ GenBank: update.\ Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6.\ PMID: 14681350; PMC: PMC308779\

    \ genes 1 color 195,90,0\ group genes\ html ../../sibGene\ longLabel Swiss Institute of Bioinformatics Gene Predictions from mRNA and ESTs\ parent genePredArchive\ shortLabel SIB Genes\ track sibGene\ type genePred\ url http://ccg.vital-it.ch/cgi-bin/tromer/tromer_quick_search_internal.pl?db=hg38&query_str=$$\ urlLabel SIB link:\ visibility hide\ bismapBigBed Single-read mappability bigBed 6 Single-read and multi-read mappability after bisulfite conversion 1 100 0 0 0 127 127 127 0 0 0 map 1 longLabel Single-read and multi-read mappability after bisulfite conversion\ parent bismap\ shortLabel Single-read mappability\ track bismapBigBed\ type bigBed 6\ view SR\ visibility dense\ skinSoleBoldoAge Skin Age bigBarChart Skin single cell RNA binned by skin donor's age from Sole-Boldo et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=aging-human-skin&gene=$$

    Description

    \

    \ This track displays data from Single-cell transcriptomes of the human skin reveal\ age-related loss of fibroblast priming. Single cell RNA sequencing (scRNA-seq) \ was performed on sun-protected skin samples prepared using droplet-sequencing \ (drop-seq). RNA profiles were generated for 15,457 cells after quality control \ and subsequent clustering identified 17 clusters with distinct expression profiles\ as found in Solé-Boldo et al., 2020. \

    \ \

    \ This track collection contains four bar chart tracks of RNA expression in the\ human skin where cells are grouped by cell type \ (Skin Cell), age \ (Skin Age),\ donor \ (Skin Donor), and cell type and donor's age \ (Skin Cell+Age). The default\ track displayed is Skin Cell.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Skin Cell subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy skin samples were obtained from whole-skin specimens belonging to 5\ male donors (ages 25-70) with fair skin. Donors underwent full body skin\ examinations by a dermatologist and medical records were checked for skin\ diseases and/or comorbidities that affect the skin. 4-mm punch biopsies were\ taken from surgically removed skin belonging to the inguinal region of the body\ also known as the groin. Skin samples were kept in MACS Tissue Storage Solution\ for less than 1 hour to avoid necrosis and apoptosis. Enzymatical and\ mechanical dissociation was done using the Miltenyi Biotec Whole Skin\ Dissociation kit for human material and the Miltenyi Biotec Gentle MACS\ dissociator. Drop-seq libraries were prepared using a 10x Genomics 3' v2 kit\ and sequenced on an Illumina HiSeq4000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Llorenç Solé-Boldo and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Solé-Boldo L, Raddatz G, Schütz S, Mallm JP, Rippe K, Lonsdorf AS, Rodríguez-Paredes\ M, Lyko F.\ \ Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming.\ Commun Biol. 2020 Apr 23;3(1):188.\ PMID: 32327715; PMC: PMC7181753\

    \ \ \ singleCell 1 barChartBars OLD YOUNG\ barChartColors #4c8c2c #877227\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/skinSoleBoldo/age.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/skinSoleBoldo/age.bb\ defaultLabelFields name\ html skinSoleBoldo\ labelFields name,name2\ longLabel Skin single cell RNA binned by skin donor's age from Sole-Boldo et al 2020\ parent skinSoleBoldo\ shortLabel Skin Age\ track skinSoleBoldoAge\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=aging-human-skin&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ skinSoleBoldoCellType Skin Cell bigBarChart Skin single cell RNA binned by cell type from Sole-Boldo et al 2020 3 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=aging-human-skin&gene=$$

    Description

    \

    \ This track displays data from Single-cell transcriptomes of the human skin reveal\ age-related loss of fibroblast priming. Single cell RNA sequencing (scRNA-seq) \ was performed on sun-protected skin samples prepared using droplet-sequencing \ (drop-seq). RNA profiles were generated for 15,457 cells after quality control \ and subsequent clustering identified 17 clusters with distinct expression profiles\ as found in Solé-Boldo et al., 2020. \

    \ \

    \ This track collection contains four bar chart tracks of RNA expression in the\ human skin where cells are grouped by cell type \ (Skin Cell), age \ (Skin Age),\ donor \ (Skin Donor), and cell type and donor's age \ (Skin Cell+Age). The default\ track displayed is Skin Cell.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Skin Cell subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy skin samples were obtained from whole-skin specimens belonging to 5\ male donors (ages 25-70) with fair skin. Donors underwent full body skin\ examinations by a dermatologist and medical records were checked for skin\ diseases and/or comorbidities that affect the skin. 4-mm punch biopsies were\ taken from surgically removed skin belonging to the inguinal region of the body\ also known as the groin. Skin samples were kept in MACS Tissue Storage Solution\ for less than 1 hour to avoid necrosis and apoptosis. Enzymatical and\ mechanical dissociation was done using the Miltenyi Biotec Whole Skin\ Dissociation kit for human material and the Miltenyi Biotec Gentle MACS\ dissociator. Drop-seq libraries were prepared using a 10x Genomics 3' v2 kit\ and sequenced on an Illumina HiSeq4000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Llorenç Solé-Boldo and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Solé-Boldo L, Raddatz G, Schütz S, Mallm JP, Rippe K, Lonsdorf AS, Rodríguez-Paredes\ M, Lyko F.\ \ Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming.\ Commun Biol. 2020 Apr 23;3(1):188.\ PMID: 32327715; PMC: PMC7181753\

    \ \ \ singleCell 1 barChartBars keratinocyte epidermal_stem_(EpSC)_and__progenitor_cell erythrocyte endothelial_lymphatic_cell macrophage/dendritic_cell melanocyte fibroblast_(mesenchymal) pericyte fibroblast_(pro-inflammatory) fibroblast_(secretory-papilliary) fibroblast_(secretory-reticular) T_cell endothelial_vascular_cell\ barChartColors #0298be #1293ac #b1987c #4b9021 #df2a01 #62b7c6 #9e5d22 #3d9c12 #aa5421 #ac5321 #ad5221 #fa3549 #05bd02\ barChartLimit 4\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/skinSoleBoldo/cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/skinSoleBoldo/cell_type.bb\ defaultLabelFields name\ html skinSoleBoldo\ labelFields name,name2\ longLabel Skin single cell RNA binned by cell type from Sole-Boldo et al 2020\ parent skinSoleBoldo\ shortLabel Skin Cell\ track skinSoleBoldoCellType\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=aging-human-skin&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility pack\ skinSoleBoldoAgeCellType Skin Cell+Age bigBarChart Skin single cell RNA binned by cell type and donor's age from Sole-Boldo et all 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=aging-human-skin&gene=$$

    Description

    \

    \ This track displays data from Single-cell transcriptomes of the human skin reveal\ age-related loss of fibroblast priming. Single cell RNA sequencing (scRNA-seq) \ was performed on sun-protected skin samples prepared using droplet-sequencing \ (drop-seq). RNA profiles were generated for 15,457 cells after quality control \ and subsequent clustering identified 17 clusters with distinct expression profiles\ as found in Solé-Boldo et al., 2020. \

    \ \

    \ This track collection contains four bar chart tracks of RNA expression in the\ human skin where cells are grouped by cell type \ (Skin Cell), age \ (Skin Age),\ donor \ (Skin Donor), and cell type and donor's age \ (Skin Cell+Age). The default\ track displayed is Skin Cell.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Skin Cell subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy skin samples were obtained from whole-skin specimens belonging to 5\ male donors (ages 25-70) with fair skin. Donors underwent full body skin\ examinations by a dermatologist and medical records were checked for skin\ diseases and/or comorbidities that affect the skin. 4-mm punch biopsies were\ taken from surgically removed skin belonging to the inguinal region of the body\ also known as the groin. Skin samples were kept in MACS Tissue Storage Solution\ for less than 1 hour to avoid necrosis and apoptosis. Enzymatical and\ mechanical dissociation was done using the Miltenyi Biotec Whole Skin\ Dissociation kit for human material and the Miltenyi Biotec Gentle MACS\ dissociator. Drop-seq libraries were prepared using a 10x Genomics 3' v2 kit\ and sequenced on an Illumina HiSeq4000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Llorenç Solé-Boldo and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Solé-Boldo L, Raddatz G, Schütz S, Mallm JP, Rippe K, Lonsdorf AS, Rodríguez-Paredes\ M, Lyko F.\ \ Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming.\ Commun Biol. 2020 Apr 23;3(1):188.\ PMID: 32327715; PMC: PMC7181753\

    \ \ \ singleCell 1 barChartBars Diff_Keratinocytes_OLD Diff_Keratinocytes_YOUNG EpSC_and_undiff_progenitors_OLD EpSC_and_undiff_progenitors_YOUNG Erythrocytes_OLD Erythrocytes_YOUNG Lymphatic_EC_OLD Lymphatic_EC_YOUNG Macrophages+DC_OLD Macrophages+DC_YOUNG Melanocytes_OLD Melanocytes_YOUNG Mesenchymal_OLD Mesenchymal_YOUNG Pericytes_OLD Pericytes_YOUNG Pro-inflammatory_OLD Pro-inflammatory_YOUNG Secretory-papilliary_OLD Secretory-papilliary_YOUNG Secretory-reticular_OLD Secretory-reticular_YOUNG T_cells_OLD T_cells_YOUNG Vascular_EC_OLD Vascular_EC_YOUNG\ barChartColors #0298be #0597bb #0f94ae #1c90a0 #c8bca7 #b1987c #499026 #b8ca9b #dd2b01 #dd2b02 #60b8c8 #9ccdd1 #bf916d #976222 #23ab0b #519018 #a95422 #a75622 #ac5221 #a55822 #ad5221 #ab5322 #ec8181 #fa3649 #09ba03 #0eb705\ barChartLimit 4\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/skinSoleBoldo/age_cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/skinSoleBoldo/age_cell_type.bb\ defaultLabelFields name\ html skinSoleBoldo\ labelFields name,name2\ longLabel Skin single cell RNA binned by cell type and donor's age from Sole-Boldo et all 2020\ parent skinSoleBoldo\ shortLabel Skin Cell+Age\ track skinSoleBoldoAgeCellType\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=aging-human-skin&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ skinSoleBoldoDonor Skin Donor bigBarChart Skin single cell RNA binned by skin donor from Sole-Boldo et al 2020 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=aging-human-skin&gene=$$

    Description

    \

    \ This track displays data from Single-cell transcriptomes of the human skin reveal\ age-related loss of fibroblast priming. Single cell RNA sequencing (scRNA-seq) \ was performed on sun-protected skin samples prepared using droplet-sequencing \ (drop-seq). RNA profiles were generated for 15,457 cells after quality control \ and subsequent clustering identified 17 clusters with distinct expression profiles\ as found in Solé-Boldo et al., 2020. \

    \ \

    \ This track collection contains four bar chart tracks of RNA expression in the\ human skin where cells are grouped by cell type \ (Skin Cell), age \ (Skin Age),\ donor \ (Skin Donor), and cell type and donor's age \ (Skin Cell+Age). The default\ track displayed is Skin Cell.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Skin Cell subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy skin samples were obtained from whole-skin specimens belonging to 5\ male donors (ages 25-70) with fair skin. Donors underwent full body skin\ examinations by a dermatologist and medical records were checked for skin\ diseases and/or comorbidities that affect the skin. 4-mm punch biopsies were\ taken from surgically removed skin belonging to the inguinal region of the body\ also known as the groin. Skin samples were kept in MACS Tissue Storage Solution\ for less than 1 hour to avoid necrosis and apoptosis. Enzymatical and\ mechanical dissociation was done using the Miltenyi Biotec Whole Skin\ Dissociation kit for human material and the Miltenyi Biotec Gentle MACS\ dissociator. Drop-seq libraries were prepared using a 10x Genomics 3' v2 kit\ and sequenced on an Illumina HiSeq4000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Llorenç Solé-Boldo and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Solé-Boldo L, Raddatz G, Schütz S, Mallm JP, Rippe K, Lonsdorf AS, Rodríguez-Paredes\ M, Lyko F.\ \ Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming.\ Commun Biol. 2020 Apr 23;3(1):188.\ PMID: 32327715; PMC: PMC7181753\

    \ \ \ singleCell 1 barChartBars S1 S2 S3 S4 S5\ barChartColors #6d8120 #916a2a #479220 #1294aa #8f6622\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/skinSoleBoldo/donor.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/skinSoleBoldo/donor.bb\ defaultLabelFields name\ html skinSoleBoldo\ labelFields name,name2\ longLabel Skin single cell RNA binned by skin donor from Sole-Boldo et al 2020\ parent skinSoleBoldo\ shortLabel Skin Donor\ track skinSoleBoldoDonor\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=aging-human-skin&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ skinSoleBoldo Skin Sole-Boldo Skin single cell data from Sole-Boldo et al 2020 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ This track displays data from Single-cell transcriptomes of the human skin reveal\ age-related loss of fibroblast priming. Single cell RNA sequencing (scRNA-seq) \ was performed on sun-protected skin samples prepared using droplet-sequencing \ (drop-seq). RNA profiles were generated for 15,457 cells after quality control \ and subsequent clustering identified 17 clusters with distinct expression profiles\ as found in Solé-Boldo et al., 2020. \

    \ \

    \ This track collection contains four bar chart tracks of RNA expression in the\ human skin where cells are grouped by cell type \ (Skin Cell), age \ (Skin Age),\ donor \ (Skin Donor), and cell type and donor's age \ (Skin Cell+Age). The default\ track displayed is Skin Cell.

    \ \

    Display Conventions

    \

    \ The cell types are colored by which class they belong to according to the following table.

    \ \

    \ \ \ \ \ \ \ \ \ \
    ColorCell classification
    fibroblast
    immune
    epithelial
    endothelial
    \

    \ \

    \ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Skin Cell subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.

    \ \

    Method

    \

    \ Healthy skin samples were obtained from whole-skin specimens belonging to 5\ male donors (ages 25-70) with fair skin. Donors underwent full body skin\ examinations by a dermatologist and medical records were checked for skin\ diseases and/or comorbidities that affect the skin. 4-mm punch biopsies were\ taken from surgically removed skin belonging to the inguinal region of the body\ also known as the groin. Skin samples were kept in MACS Tissue Storage Solution\ for less than 1 hour to avoid necrosis and apoptosis. Enzymatical and\ mechanical dissociation was done using the Miltenyi Biotec Whole Skin\ Dissociation kit for human material and the Miltenyi Biotec Gentle MACS\ dissociator. Drop-seq libraries were prepared using a 10x Genomics 3' v2 kit\ and sequenced on an Illumina HiSeq4000.

    \ \

    The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    Credit

    \

    \ Thanks to Llorenç Solé-Boldo and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.

    \ \

    References

    \

    \ Solé-Boldo L, Raddatz G, Schütz S, Mallm JP, Rippe K, Lonsdorf AS, Rodríguez-Paredes\ M, Lyko F.\ \ Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming.\ Commun Biol. 2020 Apr 23;3(1):188.\ PMID: 32327715; PMC: PMC7181753\

    \ \ \ singleCell 0 group singleCell\ longLabel Skin single cell data from Sole-Boldo et al 2020\ pennantIcon 19.jpg liftover.html "lifted from hg19"\ shortLabel Skin Sole-Boldo\ superTrack on\ track skinSoleBoldo\ visibility hide\ wgRna sno/miRNA bed 8 + C/D and H/ACA Box snoRNAs, scaRNAs, and microRNAs from snoRNABase and miRBase 0 100 200 80 0 227 167 127 0 0 0 http://www-snorna.biotoul.fr/plus.php?id=$$

    Description

    \

    \ This track displays positions of four different types of RNA in the human \ genome: \

    \

    \ C/D box and H/ACA box snoRNAs are guides for the 2'O-ribose methylation and \ the pseudouridilation, respectively, of rRNAs and snRNAs, although many of \ them have no documented target RNA. The scaRNAs guide modifications of the\ spliceosomal snRNAs transcribed by RNA polymerase II, and often contain both \ C/D and H/ACA domains.

    \ \

    Display Conventions and Configuration

    \

    \ This track follows the general display conventions for \ gene prediction \ tracks.

    \

    \ The miRNA precursor forms (pre-miRNA) are represented by red blocks.

    \

    \ C/D box snoRNAs, H/ACA box snoRNAs and scaRNAs are represented by blue, \ green and magenta blocks, respectively. At a zoomed-in resolution, arrows \ superimposed on the blocks indicate the sense orientation of the snoRNAs.

    \ \

    Methods

    \

    \ Precursor miRNA genomic locations from\ \ miRBase\ were calculated using wublastn for sequence alignment with the requirement of\ 100% identity. \ The extents of the precursor sequences were not generally known and were\ predicted based on base-paired hairpin structure. miRBase is\ described in Griffiths-Jones, S. (2004) and Weber, M.J. (2005) in the \ References section below.

    \

    \ The snoRNAs and scaRNAs from the snoRNABase were aligned against the \ human genome using blat. \

    \ \

    Credits

    \ Genome coordinates for this track were obtained from the miRBase sequences\ FTP site and from \ \ snoRNABase coordinates download page.\

    \ \

    References

    \

    \ When making use of these data, please cite the folowing articles in addition to\ the primary sources of the miRNA sequences:

    \

    \ Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ.\ miRBase: tools for microRNA genomics.\ Nucleic Acids Res. 2008 Jan 1;36(Database issue):D154-8.

    \

    \ Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ.\ miRBase: microRNA sequences, targets and gene nomenclature.\ Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4.

    \

    \ Griffiths-Jones S.\ The microRNA Registry.\ Nucleic Acids Res. 2004 Jan 1;32(Database issue):D109-11.

    \

    \ Weber MJ.\ New human and mouse microRNA genes found by homology search.\

    \ You may also want to cite The Wellcome Trust Sanger Institute \ miRBase and The Laboratoire de Biologie Moleculaire \ Eucaryote snoRNABase.

    \

    \ The following publication provides guidelines on miRNA annotation:\ Ambros V. et al., \ A uniform system for microRNA annotation. \ RNA. 2003;9(3):277-9.

    \

    \ genes 1 color 200,80,0\ dataVersion miRBase Release 22 (March 2018) and snoRNABase Version 3 (lifted from hg19)\ group genes\ longLabel C/D and H/ACA Box snoRNAs, scaRNAs, and microRNAs from snoRNABase and miRBase\ noScoreFilter .\ shortLabel sno/miRNA\ superTrack nonCodingRNAs pack\ track wgRna\ type bed 8 +\ url http://www-snorna.biotoul.fr/plus.php?id=$$\ url2 http://www.mirbase.org/cgi-bin/query.pl?terms=$$\ url2Label miRBase:\ urlLabel Laboratoire de Biologie Moleculaire Eucaryote:\ visibility hide\ snpedia SNPedia bed 4 SNPedia 0 100 50 0 100 152 127 177 0 0 0

    Description

    \ \

    \ SNPedia is a wiki investigating human\ genetics with information about the effects of variations in DNA, citing\ peer-reviewed scientific publications.\ \

    SNPedia all: SNPedia all SNPs (including empty pages)

    \

    \ The track "SNPedia all" shows all SNPs that exist as a page in \ SNPedia.com. As SNPedia's user collaboration grows, more \ detail will be added to SNPedia.com pages. For now, most of the pages are auto-generated by bots \ and have empty pages. According to Mike Carioso (SNPedia.com founder), SNPedia entries are mostly \ ClinVar entries marked as pathogenic with at least 4 stars as defined by the\ \ ClinVar review status. \

    \ \

    SNPedia with text: SNPedia pages with manually typed text

    \

    \ The track "SNPedia with text" is a subset of the "SNPedia all" track. This track \ displays only SNPedia entries with a text page that was created manually by a user who typed in \ some text (approximately 5,000 entries). In the browser, click on the "configure" button\ and select "next/previous item navigation" to show clickable arrows in the browser which\ will jump to the next or previous item.\

    \

    \ Clicks on the features show the text from the SNPedia.com page and a link to the original page.\

    \ \

    Display Conventions and Configuration

    \ \

    \ Genomic locations of SNPedia entries are labeled with the dbSNP ID.\

    \ \

    \ In the track "SNPedia all SNPs", the features are colored based on the SNPedia microarray \ annotation: grey for SNPs that are on no microarray, dark blue for Affymetrix, dark purple for \ Illumina and black for features on both arrays.\

    \ \

    Methods

    \ \

    \ The mappings displayed in this track were used as provided in the SNPedia GFF file.\ For the "SNPedia with text" track, all SNPedia pages were downloaded and their content \ checked with a script that tries to remove pages that were auto-generated and not created manually \ by a user.\

    \ \

    Credits

    \ \

    \ Thanks to Mike Cariaso for help with the GFF download and Max Haeussler at UCSC for building this \ track.\

    \ \

    References

    \ \

    Cariaso Michael; Lennon Greg. \ \ SNPedia: a wiki supporting personal genome annotation, interpretation and analysis. \ Nucleic acids research. 2012 40Database issue:D1308-12.\ PMID: 22140107; \ PMC: \ PMC3245045

    \ \ phenDis 1 color 50,0,100\ compositeTrack on\ group phenDis\ longLabel SNPedia\ shortLabel SNPedia\ track snpedia\ type bed 4\ visibility hide\ intronEst Spliced ESTs psl est Human ESTs That Have Been Spliced 0 100 0 0 0 127 127 127 1 0 0

    Description

    \ \

    \ This track shows alignments between human expressed sequence tags\ (ESTs) in \ GenBank and the genome that show signs of splicing when\ aligned against the genome. ESTs are single-read sequences, typically about\ 500 bases in length, that usually represent fragments of transcribed genes.\

    \ \

    \ To be considered spliced, an EST must show\ evidence of at least one canonical intron (i.e., the genomic\ sequence between EST alignment blocks must be at least 32 bases in\ length and have GT/AG ends). By requiring splicing, the level\ of contamination in the EST databases is drastically reduced\ at the expense of eliminating many genuine 3' ESTs.\ For a display of all ESTs (including unspliced), see the\ human EST track.\

    \ \

    Display Conventions and Configuration

    \ \

    \ This track follows the display conventions for\ \ PSL alignment tracks. In dense display mode, darker shading\ indicates a larger number of aligned ESTs.\

    \ \

    \ The strand information (+/-) indicates the\ direction of the match between the EST and the matching\ genomic sequence. It bears no relationship to the direction\ of transcription of the RNA with which it might be associated.\

    \ \

    \ The description page for this track has a filter that can be used to change\ the display mode, alter the color, and include/exclude a subset of items\ within the track. This may be helpful when many items are shown in the track\ display, especially when only some are relevant to the current task.\

    \ \

    \ To use the filter:\

      \
    1. Type a term in one or more of the text boxes to filter the EST\ display. For example, to apply the filter to all ESTs expressed in a specific\ organ, type the name of the organ in the tissue box. To view the list of\ valid terms for each text box, consult the table in the Table Browser that\ corresponds to the factor on which you wish to filter. For example, the\ "tissue" table contains all the types of tissues that can be\ entered into the tissue text box. Multiple terms may be entered at once,\ separated by a space. Wildcards may also be used in the filter.
      2. \
    2. If filtering on more than one value, choose the desired combination\ logic. If "and" is selected, only ESTs that match all filter\ criteria will be highlighted. If "or" is selected, ESTs that\ match any one of the filter criteria will be highlighted.
      3. \
    3. Choose the color or display characteristic that should be used to\ highlight or include/exclude the filtered items. If "exclude" is\ chosen, the browser will not display ESTs that match the filter criteria.\ If "include" is selected, the browser will display only those\ ESTs that match the filter criteria.
      4. \
    \

    \ \

    \ This track may also be configured to display base labeling, a feature that\ allows the user to display all bases in the aligning sequence or only those\ that differ from the genomic sequence. For more information about this option,\ go to the\ \ Base Coloring for Alignment Tracks page.\ Several types of alignment gap may also be colored;\ for more information, go to the\ \ Alignment Insertion/Deletion Display Options page.\

    \ \

    Methods

    \ \

    \ To make an EST, RNA is isolated from cells and reverse\ transcribed into cDNA. Typically, the cDNA is cloned\ into a plasmid vector and a read is taken from the 5'\ and/or 3' primer. For most — but not all — ESTs, the\ reverse transcription is primed by an oligo-dT, which\ hybridizes with the poly-A tail of mature mRNA. The\ reverse transcriptase may or may not make it to the 5'\ end of the mRNA, which may or may not be degraded.\

    \ \

    \ In general, the 3' ESTs mark the end of transcription\ reasonably well, but the 5' ESTs may end at any point\ within the transcript. Some of the newer cap-selected\ libraries cover transcription start reasonably well. Before the\ cap-selection techniques\ emerged, some projects used random rather than poly-A\ priming in an attempt to retrieve sequence distant from the\ 3' end. These projects were successful at this, but as\ a side effect also deposited sequences from unprocessed\ mRNA and perhaps even genomic sequences into the EST databases.\ Even outside of the random-primed projects, there is a\ degree of non-mRNA contamination. Because of this, a\ single unspliced EST should be viewed with considerable\ skepticism.\

    \ \

    \ To generate this track, human ESTs from GenBank were aligned\ against the genome using blat. Note that the maximum intron length\ allowed by blat is 750,000 bases, which may eliminate some ESTs with very\ long introns that might otherwise align. When a single\ EST aligned in multiple places, the alignment having the\ highest base identity was identified. Only alignments having\ a base identity level within 0.5% of the best and at least 96% base identity\ with the genomic sequence are displayed in this track.\

    \ \

    Credits

    \ \

    \ This track was produced at UCSC from EST sequence data\ submitted to the international public sequence databases by\ scientists worldwide.\

    \ \

    References

    \

    \ Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW.\ \ GenBank.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42.\ PMID: 23193287; PMC: PMC3531190\

    \ \

    \ Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.\ GenBank: update.\ Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6.\ PMID: 14681350; PMC: PMC308779\

    \ \

    \ Kent WJ.\ BLAT - the BLAST-like alignment tool.\ Genome Res. 2002 Apr;12(4):656-64.\ PMID: 11932250; PMC: PMC187518\

    \ rna 1 baseColorUseSequence genbank\ group rna\ indelDoubleInsert on\ indelQueryInsert on\ intronGap 30\ longLabel Human ESTs That Have Been Spliced\ maxItems 300\ shortLabel Spliced ESTs\ showDiffBasesAllScales .\ spectrum on\ track intronEst\ type psl est\ visibility hide\ svView Structural Variants bigBed 9 + Genome In a Bottle Structural Variants (dbVar nstd175) 3 100 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Genome In a Bottle Structural Variants (dbVar nstd175)\ parent giab\ shortLabel Structural Variants\ track svView\ type bigBed 9 +\ view sv\ visibility pack\ stsMap STS Markers bed 5 + STS Markers on Genetic (blue) and Radiation Hybrid (black) Maps 0 100 0 0 0 128 128 255 0 0 0

    Description

    \

    This track shows locations of Sequence Tagged Site (STS) markers\ along the draft assembly. These markers have been mapped using either\ genetic mapping (Genethon, Marshfield, and deCODE maps), radiation\ hybridization mapping (Stanford, Whitehead RH, and GeneMap99 maps) or\ YAC mapping (the Whitehead YAC map) techniques. Since August 2001,\ this track no longer displays fluorescent in situ hybridization (FISH)\ clones, which are now displayed in a separate track.

    \ \

    Genetic map markers are shown in blue; radiation hybrid map markers\ are shown in black. When a marker maps to multiple positions in the\ genome, it is shown in a lighter color.

    \ \

    Methods

    \

    Positions of STS markers are determined using both full sequences\ and primer information. Full sequences are aligned using blat,\ while isPCR (Jim Kent) and ePCR are used to find\ locations using primer information. Both sets of placements are\ combined to give final positions. In nearly all cases, full sequence\ and primer-based locations are in agreement, but in cases of\ disagreement, full sequence positions are used. Sequence and primer\ information for the markers were obtained from the primary sites for\ each of the maps, and from NCBI UniSTS (now part of NCBI\ Probe).\ \

    Using the Filter

    \

    The track filter can be used to change the color or include/exclude\ a set of map data within the track. This is helpful when many items\ are shown in the track display, especially when only some are relevant\ to the current task. To use the filter: \

      \
    • In the pulldown menu, select the map whose data you would like to\ highlight or exclude in the display. By default, the "All\ Genetic" option is selected.\
    • Choose the color or display characteristic that will be used to\ highlight or include/exclude the filtered items. If\ "exclude" is chosen, the browser will not display data from\ the map selected in the pulldown list. If "include" is\ selected, the browser will display only data from the selected map.\

    \

    When you have finished configuring the filter, click the\ Submit button.

    \ \

    Credits

    \

    This track was designed and implemented by Terry Furey. Many\ thanks to the researchers who worked on these maps, and to Greg\ Schuler, Arek Kasprzyk, Wonhee Jang, and Sanja Rogic for helping\ process the data. Additional data on the individual maps can be found\ at the following links:\

    \

    \ map 1 altColor 128,128,255,\ group map\ longLabel STS Markers on Genetic (blue) and Radiation Hybrid (black) Maps\ shortLabel STS Markers\ track stsMap\ type bed 5 +\ visibility hide\ wgEncodeRegDnaseUwT47dHotspot T-47D Ht bigBed 6 + T-47D mammary ductal carcinoma cell line DNaseI Hotspots from ENCODE 0 100 255 124 85 255 189 170 1 0 0 regulation 1 color 255,124,85\ longLabel T-47D mammary ductal carcinoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel T-47D Ht\ subGroups view=b_Hot cellType=T-47D treatment=n_a tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwT47dHotspot\ type bigBed 6 +\ tabulaSapiensFullDetails Tabula Details bigBarChart Tabula sapiens full details view 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=tabula-sapiens+all&gene=$$

    \ Description

    \

    \ This track shows data from \ The Tabula Sapiens: a multiple organ single cell\ transcriptomic atlas of humans. The dataset covers ~500,000 cells from\ a total of 24 human tissues and organs from all regions of the body using both \ droplet-based and plate-based single-cell RNA-sequencing (scRNA-seq). \ Samples were taken from the human bladder, blood,\ bone marrow, eye, fat, heart, kidney, large intestine, liver, lung, lymph node,\ mammary, muscle, pancreas, prostate, salivary gland, skin, small intestine,\ spleen, thymus, tongue, trachea, uterus, and vasculature. The dataset includes\ 264,009 immune cells, 102,580 epithelial cells, 32,701 endothelial cells, and\ 81,529 stromal cells. A total of 475 distinct cell types were identified.\

    \ \

    \ This track collection contains two bar chart tracks of RNA expression.\ The first track,\ Tabula Tissue Cell\ allows cells to be grouped together and faceted on up to 3 categories: tissue, cell class, and cell\ type. The second track,\ Tabula Details\ allows cells to be grouped together and faceted on up to 7 categories: tissue,\ cell class, cell type, subtissue, sex, donor, and assay.\

    \ \

    \ Please see \ tabula-sapiens-portal.ds.czbiohub.org \ for further interactive displays and additional data.

    \ \

    Display Conventions and Configuration

    \

    \ The cell types are colored by which compartment they belong to according to the following table.\ In addition, cells found in the \ Tabula Details\ track with less than 100 transcripts will be a lighter shade and less\ concentrated in color to represent a low number of transcripts.\

    \ \

    \ \ \ \ \ \ \ \ \ \ \
    ColorCell Compartment
    epithelial
    endothelial
    germline
    immune
    stromal
    \

    \ \

    Methods

    \ \

    All tissues

    \ \

    \ 36 tissue specimens comprising 24 unique tissues and organs were collected from \ 15 human donors (TSP1-15) with a mean age of 51 years. Tissue specimens were collected at\ various hospital locations in the Northern California region and transported on\ ice in less than one hour to preserve cell viability. Single cell suspensions\ from each organ were prepared in tissue expert laboratories at Stanford and\ UCSF. For each tissue, the dissociated cells were sorted using MACS and FACS to\ balance immune, stromal, epithelial, and endothelial cell types.\

    \ \

    \ Sequencing libraries for all tissues were prepared using 10x 3' v3.1, 10x 5' v2, and\ Smart-seq2 (SS2) protocols for Illumina sequencing. Two 10x reactions per organ were\ loaded with 7,000 cells each with the goal to yield 10,000 QC-passed cells.\ Four 384-well Smartseq2 plates were run per organ. In most organs, one plate\ was used for each compartment (epithelial, endothelial, immune, and stromal),\ however, to capture rare cells, some organ experts allocated cells across the\ four plates differently. \ Sequencing runs for droplet libraries were loaded onto the NovaSeq S4 flow cell in sets\ of 16 to 20 libraries of approximately 5,000 cells per library with the goal of generating\ 50,000 to 75,000 reads per cell. Plate libraries were run in sets of 20 plates on Novaseq\ S4 flow cells to allow generating 1M reads per cell, depending on library quality. 152 10x\ reactions were performed, yielding 454,069 cells passing QC, and 161 smartseq2 plates\ were processed, yielding 27,051 cells passing QC.\

    \ \

    \ Tissues collected from the same donor were used to study the\ clonal distribution of T cells between tissues, to understand the tissue\ specific mutation rate in B cells, and to analyze the cell cycle state and\ proliferative potential of shared cell types across tissues. RNA splicing\ analysis was also used to characterize cell type specific splicing and its\ variation across individuals.\

    \ \

    \ For detailed methods and information on donors for each organ or tissue \ please refer to Quake et al, 2021 or the \ Tabula Sapiens website.\

    \ \

    Errata

    \

    \ Some cell types, particularly in the intestines, are duplicated due to\ the use of multiple ontologies for the same cell type. In a future version,\ we plan to pool the data from these duplicates.\

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser. The UCSC command line utility matrixClusterColumns,\ matrixToBarChart, and bedToBigBed were used to transform these into a bar\ chart format bigBed file that can be visualized.\ The UCSC utilities can be found on\ our download server.

    \ \

    Credits

    \

    Thanks to the Tabula Sapiens Consortium who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent, Brittney\ Wick, and Rachel Schwartz.

    \ \

    References

    \

    \ The Tabula Sapiens Consortium, Quake SR., The Tabula Sapiens: A Multiple Organ Single Cell\ Transcriptomic Atlas of Humans. bioRxiv. 2021 March 4.; doi:\ https://doi.org/10.1101/2021.07.19.452956.\

    \ \ singleCell 1 barChartCategoryUrl /gbdb/hg38/bbi/tabulaSapiens/facet_detailed.categories\ barChartFacets tissue,subtissue,cell_class,cell_type,sex,donor,assay\ barChartMerge on\ barChartMetric gene/genome\ barChartStatsUrl /gbdb/hg38/bbi/tabulaSapiens/facet_detailed.facets\ barChartStretchToItem on\ barChartUnit parts per million\ bigDataUrl /gbdb/hg38/bbi/tabulaSapiens/facet_detailed.bb\ defaultLabelFields name\ html tabulaSapiens\ labelFields name,name2\ longLabel Tabula sapiens full details view\ maxWindowToDraw 10000000\ parent tabulaSapiens\ shortLabel Tabula Details\ track tabulaSapiensFullDetails\ type bigBarChart\ url https://cells.ucsc.edu/?ds=tabula-sapiens+all&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ tabulaSapiens Tabula Sapiens Tabula Sapiens single cell RNA data from many tissues 0 100 0 0 0 127 127 127 0 0 0

    \ Description

    \

    \ This track shows data from \ The Tabula Sapiens: a multiple organ single cell\ transcriptomic atlas of humans. The dataset covers ~500,000 cells from\ a total of 24 human tissues and organs from all regions of the body using both \ droplet-based and plate-based single-cell RNA-sequencing (scRNA-seq). \ Samples were taken from the human bladder, blood,\ bone marrow, eye, fat, heart, kidney, large intestine, liver, lung, lymph node,\ mammary, muscle, pancreas, prostate, salivary gland, skin, small intestine,\ spleen, thymus, tongue, trachea, uterus, and vasculature. The dataset includes\ 264,009 immune cells, 102,580 epithelial cells, 32,701 endothelial cells, and\ 81,529 stromal cells. A total of 475 distinct cell types were identified.\

    \ \

    \ This track collection contains two bar chart tracks of RNA expression.\ The first track,\ Tabula Tissue Cell\ allows cells to be grouped together and faceted on up to 3 categories: tissue, cell class, and cell\ type. The second track,\ Tabula Details\ allows cells to be grouped together and faceted on up to 7 categories: tissue,\ cell class, cell type, subtissue, sex, donor, and assay.\

    \ \

    \ Please see \ tabula-sapiens-portal.ds.czbiohub.org \ for further interactive displays and additional data.

    \ \

    Display Conventions and Configuration

    \

    \ The cell types are colored by which compartment they belong to according to the following table.\ In addition, cells found in the \ Tabula Details\ track with less than 100 transcripts will be a lighter shade and less\ concentrated in color to represent a low number of transcripts.\

    \ \

    \ \ \ \ \ \ \ \ \ \ \
    ColorCell Compartment
    epithelial
    endothelial
    germline
    immune
    stromal
    \

    \ \

    Methods

    \ \

    All tissues

    \ \

    \ 36 tissue specimens comprising 24 unique tissues and organs were collected from \ 15 human donors (TSP1-15) with a mean age of 51 years. Tissue specimens were collected at\ various hospital locations in the Northern California region and transported on\ ice in less than one hour to preserve cell viability. Single cell suspensions\ from each organ were prepared in tissue expert laboratories at Stanford and\ UCSF. For each tissue, the dissociated cells were sorted using MACS and FACS to\ balance immune, stromal, epithelial, and endothelial cell types.\

    \ \

    \ Sequencing libraries for all tissues were prepared using 10x 3' v3.1, 10x 5' v2, and\ Smart-seq2 (SS2) protocols for Illumina sequencing. Two 10x reactions per organ were\ loaded with 7,000 cells each with the goal to yield 10,000 QC-passed cells.\ Four 384-well Smartseq2 plates were run per organ. In most organs, one plate\ was used for each compartment (epithelial, endothelial, immune, and stromal),\ however, to capture rare cells, some organ experts allocated cells across the\ four plates differently. \ Sequencing runs for droplet libraries were loaded onto the NovaSeq S4 flow cell in sets\ of 16 to 20 libraries of approximately 5,000 cells per library with the goal of generating\ 50,000 to 75,000 reads per cell. Plate libraries were run in sets of 20 plates on Novaseq\ S4 flow cells to allow generating 1M reads per cell, depending on library quality. 152 10x\ reactions were performed, yielding 454,069 cells passing QC, and 161 smartseq2 plates\ were processed, yielding 27,051 cells passing QC.\

    \ \

    \ Tissues collected from the same donor were used to study the\ clonal distribution of T cells between tissues, to understand the tissue\ specific mutation rate in B cells, and to analyze the cell cycle state and\ proliferative potential of shared cell types across tissues. RNA splicing\ analysis was also used to characterize cell type specific splicing and its\ variation across individuals.\

    \ \

    \ For detailed methods and information on donors for each organ or tissue \ please refer to Quake et al, 2021 or the \ Tabula Sapiens website.\

    \ \

    Errata

    \

    \ Some cell types, particularly in the intestines, are duplicated due to\ the use of multiple ontologies for the same cell type. In a future version,\ we plan to pool the data from these duplicates.\

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser. The UCSC command line utility matrixClusterColumns,\ matrixToBarChart, and bedToBigBed were used to transform these into a bar\ chart format bigBed file that can be visualized.\ The UCSC utilities can be found on\ our download server.

    \ \

    Credits

    \

    Thanks to the Tabula Sapiens Consortium who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent, Brittney\ Wick, and Rachel Schwartz.

    \ \

    References

    \

    \ The Tabula Sapiens Consortium, Quake SR., The Tabula Sapiens: A Multiple Organ Single Cell\ Transcriptomic Atlas of Humans. bioRxiv. 2021 March 4.; doi:\ https://doi.org/10.1101/2021.07.19.452956.\

    \ \ singleCell 0 group singleCell\ longLabel Tabula Sapiens single cell RNA data from many tissues\ shortLabel Tabula Sapiens\ superTrack on\ track tabulaSapiens\ visibility hide\ tabulaSapiensTissueCellType Tabula Tissue Cell bigBarChart Tabula sapiens RNA by tissue and cell type 3 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=tabula-sapiens+all&gene=$$

    \ Description

    \

    \ This track shows data from \ The Tabula Sapiens: a multiple organ single cell\ transcriptomic atlas of humans. The dataset covers ~500,000 cells from\ a total of 24 human tissues and organs from all regions of the body using both \ droplet-based and plate-based single-cell RNA-sequencing (scRNA-seq). \ Samples were taken from the human bladder, blood,\ bone marrow, eye, fat, heart, kidney, large intestine, liver, lung, lymph node,\ mammary, muscle, pancreas, prostate, salivary gland, skin, small intestine,\ spleen, thymus, tongue, trachea, uterus, and vasculature. The dataset includes\ 264,009 immune cells, 102,580 epithelial cells, 32,701 endothelial cells, and\ 81,529 stromal cells. A total of 475 distinct cell types were identified.\

    \ \

    \ This track collection contains two bar chart tracks of RNA expression.\ The first track,\ Tabula Tissue Cell\ allows cells to be grouped together and faceted on up to 3 categories: tissue, cell class, and cell\ type. The second track,\ Tabula Details\ allows cells to be grouped together and faceted on up to 7 categories: tissue,\ cell class, cell type, subtissue, sex, donor, and assay.\

    \ \

    \ Please see \ tabula-sapiens-portal.ds.czbiohub.org \ for further interactive displays and additional data.

    \ \

    Display Conventions and Configuration

    \

    \ The cell types are colored by which compartment they belong to according to the following table.\ In addition, cells found in the \ Tabula Details\ track with less than 100 transcripts will be a lighter shade and less\ concentrated in color to represent a low number of transcripts.\

    \ \

    \ \ \ \ \ \ \ \ \ \ \
    ColorCell Compartment
    epithelial
    endothelial
    germline
    immune
    stromal
    \

    \ \

    Methods

    \ \

    All tissues

    \ \

    \ 36 tissue specimens comprising 24 unique tissues and organs were collected from \ 15 human donors (TSP1-15) with a mean age of 51 years. Tissue specimens were collected at\ various hospital locations in the Northern California region and transported on\ ice in less than one hour to preserve cell viability. Single cell suspensions\ from each organ were prepared in tissue expert laboratories at Stanford and\ UCSF. For each tissue, the dissociated cells were sorted using MACS and FACS to\ balance immune, stromal, epithelial, and endothelial cell types.\

    \ \

    \ Sequencing libraries for all tissues were prepared using 10x 3' v3.1, 10x 5' v2, and\ Smart-seq2 (SS2) protocols for Illumina sequencing. Two 10x reactions per organ were\ loaded with 7,000 cells each with the goal to yield 10,000 QC-passed cells.\ Four 384-well Smartseq2 plates were run per organ. In most organs, one plate\ was used for each compartment (epithelial, endothelial, immune, and stromal),\ however, to capture rare cells, some organ experts allocated cells across the\ four plates differently. \ Sequencing runs for droplet libraries were loaded onto the NovaSeq S4 flow cell in sets\ of 16 to 20 libraries of approximately 5,000 cells per library with the goal of generating\ 50,000 to 75,000 reads per cell. Plate libraries were run in sets of 20 plates on Novaseq\ S4 flow cells to allow generating 1M reads per cell, depending on library quality. 152 10x\ reactions were performed, yielding 454,069 cells passing QC, and 161 smartseq2 plates\ were processed, yielding 27,051 cells passing QC.\

    \ \

    \ Tissues collected from the same donor were used to study the\ clonal distribution of T cells between tissues, to understand the tissue\ specific mutation rate in B cells, and to analyze the cell cycle state and\ proliferative potential of shared cell types across tissues. RNA splicing\ analysis was also used to characterize cell type specific splicing and its\ variation across individuals.\

    \ \

    \ For detailed methods and information on donors for each organ or tissue \ please refer to Quake et al, 2021 or the \ Tabula Sapiens website.\

    \ \

    Errata

    \

    \ Some cell types, particularly in the intestines, are duplicated due to\ the use of multiple ontologies for the same cell type. In a future version,\ we plan to pool the data from these duplicates.\

    \ \

    Data Access

    \

    \ The raw bar chart data can be\ explored interactively with the Table\ Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API. Please refer to our mailing\ list archives for questions, or our Data Access FAQ for more\ information.

    \ \

    \ The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser. The UCSC command line utility matrixClusterColumns,\ matrixToBarChart, and bedToBigBed were used to transform these into a bar\ chart format bigBed file that can be visualized.\ The UCSC utilities can be found on\ our download server.

    \ \

    Credits

    \

    Thanks to the Tabula Sapiens Consortium who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent, Brittney\ Wick, and Rachel Schwartz.

    \ \

    References

    \

    \ The Tabula Sapiens Consortium, Quake SR., The Tabula Sapiens: A Multiple Organ Single Cell\ Transcriptomic Atlas of Humans. bioRxiv. 2021 March 4.; doi:\ https://doi.org/10.1101/2021.07.19.452956.\

    \ \ singleCell 1 barChartCategoryUrl /gbdb/hg38/bbi/tabulaSapiens/bw_edit_tissue_cell_type.categories\ barChartFacets tissue,cell_class,cell_type\ barChartMetric gene/genome\ barChartStatsUrl /gbdb/hg38/bbi/tabulaSapiens/bw_edit_tissue_cell_type.facets\ barChartStretchToItem on\ barChartUnit parts per million\ bigDataUrl /gbdb/hg38/bbi/tabulaSapiens/tissue_cell_type.bb\ defaultLabelFields name\ html tabulaSapiens\ labelFields name,name2\ longLabel Tabula sapiens RNA by tissue and cell type\ parent tabulaSapiens\ shortLabel Tabula Tissue Cell\ track tabulaSapiensTissueCellType\ type bigBarChart\ url https://cells.ucsc.edu/?ds=tabula-sapiens+all&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility pack\ gdcCancer TCGA Pan-Cancer bigLolly 12 + TCGA Pan-Cancer mutations: 33 TCGA Cancer Projects Summary (Pan-Can 33) 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ This track shows the genomic positions of somatic variants found through whole genome sequencing of tumors\ as part of The Cancer Genome Atlas (TCGA) by the National Cancer Institute, made available through\ the Genomic Data Commons Portal. The\ data shown here is sometimes called the "Pan-Cancer dataset", a collection of thirty-three\ TCGA projects processed in a uniform way.

    \ \

    Display Conventions and Configuration

    \

    \ Variants can be filtered by project ID and gender from the track details page. Pressing the\ "All" button allows the user to specify whether the checked values all have to be\ true of a particular variant, or if only one of them need be present to satisfy the filter.

    \ \

    \ The vertical viewing range in full mode can also be used to filter what variants are shown. Variants\ that have a sampleCount more or less than the min and max values specificed in the viewing range are\ not displayed.

    \ \

    Data access

    \

    \ The raw data can be explored interactively with the Table Browser or the Data\ Integrator.\ \

    \ For automated download and analysis, the genome annotation for all the thirty-three projects is\ stored in a bigBed file that can be downloaded from\ our\ download server. There are also bigBed files for each of the thirty-three projects in that\ directory. Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here. The tool can also be used to obtain only features within a given range,\ e.g.,

    \ 
    \
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/gdcCancer/gdcCancer.bb -chrom=chr21 -start=0 -end=100000000 stdout\
    \ \ \

    Methods

    \ \

    \ All MuTect Variant calls were downloaded from the GDC portal in January 2019 and reformatted at UCSC\ to the bigBed format with a short\ script, cancerMafToBigBed.\

    \ \

    Credits

    \

    \ Thanks to GDC for making the TCGA data available on their web site.\

    \ phenDis 1 compositeTrack on\ genderFilterType multipleListOr\ genderFilterValues male,female\ group phenDis\ longLabel TCGA Pan-Cancer mutations: 33 TCGA Cancer Projects Summary (Pan-Can 33)\ maxItems 500000\ project_idFilterType multipleListOr\ project_idFilterValues TCGA-LAML|Acute Myeloid Leukemia,TCGA-ACC|Adrenocortical carcinoma,TCGA-BLCA|Bladder Urothelial Carcinoma,TCGA-LGG|Brain Lower Grade Glioma,TCGA-BRCA|Breast invasive carcinoma,TCGA-CESC|Cervical squamous cell carcinoma and endocervical adenocarcinoma,TCGA-CHOL|Cholangiocarcinoma,TCGA-LCML|Chronic Myelogenous Leukemia,TCGA-COAD|Colon adenocarcinoma,TCGA-CNTL|Controls,TCGA-ESCA|Esophageal carcinoma,TCGA-FPPP|FFPE Pilot Phase II,TCGA-GBM|Glioblastoma multiforme,TCGA-HNSC|Head and Neck squamous cell carcinoma,TCGA-KICH|Kidney Chromophobe,TCGA-KIRC|Kidney renal clear cell carcinoma,TCGA-KIRP|Kidney renal papillary cell carcinoma,TCGA-LIHC|Liver hepatocellular carcinoma,TCGA-LUAD|Lung adenocarcinoma,TCGA-LUSC|Lung squamous cell carcinoma,TCGA-DLBC|Lymphoid Neoplasm Diffuse Large B-cell Lymphoma,TCGA-MESO|Mesothelioma,TCGA-MISC|Miscellaneous,TCGA-OV|Ovarian serous cystadenocarcinoma,TCGA-PAAD|Pancreatic adenocarcinoma,TCGA-PCPG|Pheochromocytoma and Paraganglioma,TCGA-PRAD|Prostate adenocarcinoma,TCGA-READ|Rectum adenocarcinoma,TCGA-SARC|Sarcoma,TCGA-SKCM|Skin Cutaneous Melanoma,TCGA-STAD|Stomach adenocarcinoma,TCGA-TGCT|Testicular Germ Cell Tumors,TCGA-THYM|Thymoma,TCGA-THCA|Thyroid carcinoma,TCGA-UCS|Uterine Carcinosarcoma,TCGA-UCEC|Uterine Corpus Endometrial Carcinoma,TCGA-UVM|Uveal Melanoma\ shortLabel TCGA Pan-Cancer\ track gdcCancer\ type bigLolly 12 +\ visibility hide\ transMapV5 TransMap V5 TransMap Alignments Version 5 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ These tracks contain cDNA and gene alignments produced by\ the TransMap cross-species alignment algorithm\ from other vertebrate species in the UCSC Genome Browser.\ For closer evolutionary distances, the alignments are created using\ syntenically filtered LASTZ or BLASTZ alignment chains, resulting\ in a prediction of the orthologous genes in human. For more distant\ organisms, reciprocal best alignments are used.\

    \ \ TransMap maps genes and related annotations in one species to another\ using synteny-filtered pairwise genome alignments (chains and nets) to\ determine the most likely orthologs. For example, for the mRNA TransMap track\ on the human assembly, more than 400,000 mRNAs from 25 vertebrate species were\ aligned at high stringency to the native assembly using BLAT. The alignments\ were then mapped to the human assembly using the chain and net alignments\ produced using BLASTZ, which has higher sensitivity than BLAT for diverged\ organisms.\

    \ Compared to translated BLAT, TransMap finds fewer paralogs and aligns more UTR\ bases.\

    \ \

    Display Conventions and Configuration

    \ \

    \ This track follows the display conventions for \ PSL alignment tracks.

    \

    \ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare cDNAs against the genomic sequence. For more \ information about this option, click \ here.\ Several types of alignment gap may also be colored; \ for more information, click \ here.\ \

    Methods

    \ \

    \

      \
    1. Source transcript alignments were obtained from vertebrate organisms\ in the UCSC Genome Browser Database. BLAT alignments of RefSeq Genes, GenBank \ mRNAs, and GenBank Spliced ESTs to the cognate genome, along with UCSC Genes,\ were used as available.\
    2. For all vertebrate assemblies that had BLASTZ alignment chains and\ nets to the human (hg38) genome, a subset of the alignment chains were\ selected as follows:\
        \
      • For organisms whose branch distance was no more than 0.5\ (as computed by phyloFit, see Conservation track description for details),\ syntenic filtering was used. Reciprocal best nets were used if available;\ otherwise, nets were selected with the netfilter -syn command.\ The chains corresponding to the selected nets were used for mapping.\
      • For more distant species, where the determination of synteny is difficult,\ the full set of chains was used for mapping. This allows for more genes to\ map at the expense of some mapping to paralogous regions. The\ post-alignment filtering step removes some of the duplications.\
      \
    3. The pslMap program was used to do a base-level projection of\ the source transcript alignments via the selected chains\ to the human genome, resulting in pairwise alignments of the source transcripts to\ the genome.\
    4. The resulting alignments were filtered with pslCDnaFilter\ with a global near-best criteria of 0.5% in finished genomes\ (human and mouse) and 1.0% in other genomes. Alignments\ where less than 20% of the transcript mapped were discarded.\
    \

    \ \

    \ To ensure unique identifiers for each alignment, cDNA and gene accessions were\ made unique by appending a suffix for each location in the source genome and\ again for each mapped location in the destination genome. The format is:\ 

    \
   accession.version-srcUniq.destUniq\
    \ \ Where srcUniq is a number added to make each source alignment unique, and\ destUniq is added to give the subsequent TransMap alignments unique\ identifiers.\

    \

    \ For example, in the cow genome, there are two alignments of mRNA BC149621.1.\ These are assigned the identifiers BC149621.1-1 and BC149621.1-2.\ When these are mapped to the human genome, BC149621.1-1 maps to a single\ location and is given the identifier BC149621.1-1.1. However, BC149621.1-2\ maps to two locations, resulting in BC149621.1-2.1 and BC149621.1-2.2. Note\ that multiple TransMap mappings are usually the result of tandem duplications, where both\ chains are identified as syntenic.\

    \ \

    Data Access

    \ \

    \ The raw data for these tracks can be accessed interactively through the\ Table Browser or the\ Data Integrator.\ For automated analysis, the annotations are stored in\ bigPsl files (containing a\ number of extra columns) and can be downloaded from our\ download server, \ or queried using our API. For more \ information on accessing track data see our \ Track Data Access FAQ.\ The files are associated with these tracks in the following way:\

      \
    • TransMap Ensembl - hg38.ensembl.transMapV5.bigPsl
      • \
    • TransMap RefGene - hg38.refseq.transMapV5.bigPsl
      • \
    • TransMap RNA - hg38.rna.transMapV5.bigPsl
      • \
    • TransMap ESTs - hg38.est.transMapV5.bigPsl
      • \
    \ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed, which can be compiled from the source code or downloaded as\ a precompiled binary for your system. Instructions for downloading source code and\ binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, for example:\

    \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/transMap/V5/hg38.refseq.transMapV5.bigPsl\ -chrom=chr6 -start=0 -end=1000000 stdout\ \ \

    Credits

    \ \

    \ This track was produced by Mark Diekhans at UCSC from cDNA and EST sequence data\ submitted to the international public sequence databases by \ scientists worldwide and annotations produced by the RefSeq,\ Ensembl, and GENCODE annotations projects.

    \ \

    References

    \

    \ Siepel A, Diekhans M, Brejová B, Langton L, Stevens M, Comstock CL, Davis C, Ewing B, Oommen S,\ Lau C et al.\ \ Targeted discovery of novel human exons by comparative genomics.\ Genome Res. 2007 Dec;17(12):1763-73.\ PMID: 17989246; PMC: PMC2099585\

    \ \

    \ Stanke M, Diekhans M, Baertsch R, Haussler D.\ \ Using native and syntenically mapped cDNA alignments to improve de novo gene finding.\ Bioinformatics. 2008 Mar 1;24(5):637-44.\ PMID: 18218656\

    \ \

    \ Zhu J, Sanborn JZ, Diekhans M, Lowe CB, Pringle TH, Haussler D.\ \ Comparative genomics search for losses of long-established genes on the human lineage.\ PLoS Comput Biol. 2007 Dec;3(12):e247.\ PMID: 18085818; PMC: PMC2134963\

    \ \ genes 0 group genes\ html transMapV5\ longLabel TransMap Alignments Version 5\ shortLabel TransMap V5\ superTrack on\ track transMapV5\ tRNAs tRNA Genes bed 6 + Transfer RNA Genes Identified with tRNAscan-SE 0 100 0 20 150 127 137 202 0 0 0

    Description

    \

    \ This track displays tRNA genes predicted by using \ tRNAscan-SE v.1.23. \

    \

    \ tRNAscan-SE is an integrated program that uses tRNAscan (Fichant) and an A/B box motif detection \ algorithm (Pavesi) as pre-filters to obtain an initial list of tRNA candidates. \ The program then filters these candidates with a covariance model-based \ search program \ COVE (Eddy) to obtain a highly specific set of primary sequence \ and secondary structure predictions that represent 99-100% of true tRNAs \ with a false positive rate of fewer than 1 per 15 gigabases.

    \

    \ Detailed tRNA annotations for eukaryotes, bacteria, and archaea are available at\ Genomic tRNA Database (GtRNAdb). \

    \

    \ What does the tRNAscan-SE score mean? Anything with a score above 20 bits is likely to be\ derived from a tRNA, although this does not indicate whether the tRNA gene still encodes a \ functional tRNA molecule (i.e. tRNA-derived SINES probably do not function in the ribosome in translation).\ Vertebrate tRNAs with scores of >60.0 (bits) are likely to encode functional tRNA genes, and \ those with scores below ~45 have sequence or structural features that indicate they probably are\ no longer involved in translation. tRNAs with scores between 45-60 bits are in the "grey" zone, and may\ or may not have all the required features to be functional. In these cases, tRNAs should be inspected\ carefully for loss of specific primary or secondary structure features (usually in alignments with other\ genes of the same isotype), in order to make a better educated guess. These rough score range guides \ are not exact, nor are they based on specific biochemical studies of atypical tRNA features,\ so please treat them accordingly.\

    \

    \ Please note that tRNA genes marked as "Pseudo" are low scoring predictions that are mostly pseudogenes or \ tRNA-derived elements. These genes do not usually fold into a typical cloverleaf tRNA secondary \ structure and the provided images of the predicted secondary structures may appear rotated.\

    \ \

    Credits

    \

    \ Both tRNAscan-SE and GtRNAdb are maintained by the\ Lowe Lab at UCSC.\

    \

    \ Cove-predicted tRNA secondary structures were rendered by NAVIEW (c) 1988 Robert E. Bruccoleri.\

    \ \

    References

    \

    \ When making use of these data, please cite the following articles:

    \

    \ Chan PP, Lowe TM. \ GtRNAdb: a database of transfer RNA genes detected in genomic sequence.\ Nucleic Acids Res. 2009 Jan;37(Database issue):D93-7.\ PMID: 18984615; PMC: PMC2686519\

    \ \

    \ Eddy SR, Durbin R. \ \ RNA sequence analysis using covariance models.\ Nucleic Acids Res. 1994 Jun 11;22(11):2079-88.\ PMID: 8029015; PMC: PMC308124\

    \ \

    \ Fichant GA, Burks C. \ \ Identifying potential tRNA genes in genomic DNA sequences.\ J Mol Biol. 1991 Aug 5;220(3):659-71.\ PMID: 1870126\

    \ \

    \ Lowe TM, Eddy SR. \ \ tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.\ Nucleic Acids Res. 1997 Mar 1;25(5):955-64.\ PMID: 9023104; PMC: PMC146525\

    \ \

    \ Pavesi A, Conterio F, Bolchi A, Dieci G, Ottonello S.\ \ Identification of new eukaryotic tRNA genes in genomic DNA databases by a multistep weight matrix\ analysis of transcriptional control regions.\ Nucleic Acids Res. 1994 Apr 11;22(7):1247-56.\ PMID: 8165140; PMC: PMC523650\

    \ genes 1 color 0,20,150\ group genes\ longLabel Transfer RNA Genes Identified with tRNAscan-SE\ nextItemButton on\ noScoreFilter .\ shortLabel tRNA Genes\ superTrack nonCodingRNAs pack\ track tRNAs\ type bed 6 +\ visibility hide\ knownAlt UCSC Alt Events bed 6 . Alternative Splicing, Alternative Promoter and Similar Events in UCSC Genes 0 100 90 0 150 172 127 202 0 0 0

    Description

    \

    This track shows various types of alternative splicing and other\ events that result in more than a single transcript from the same\ gene. The label by an item describes the type of event. The events are:

    \
      \
    • Alternate Promoter (altPromoter) - Transcription starts at multiple places. The altPromoter extends from 100 bases before to 50 bases after transcription start.\
    • Alternate Finish Site (altFinish) - Transcription ends at multiple places.\
    • Cassette Exon (cassetteExon) - Exon is present in some transcripts but \ not others. These are found by looking for exons that overlap an intron in the \ same transcript.\
    • Retained Intron (retainedIntron) - Introns are spliced out in some \ transcripts but not others. In some cases, particularly when the intron is near \ the 3' end, this can reflect an incompletely processed transcript rather than \ a true alt-splicing event.\
    • Overlapping Exon (bleedingExon) - Initial or terminal exons overlap \ in an intron in another transcript. These often are associated with incompletely \ processed transcripts.\
    • Alternate 3' End (altThreePrime) - Variations on the 3' end of an intron.\
    • Alternate 5' End (altFivePrime) - Variations on the 5' end of an intron.\
    • Intron Ends have AT/AC (atacIntron) - An intron with AT/AC ends rather than \ the usual GT/AG. These are associated with the minor spliceosome.\
    • Strange Intron Ends (strangeSplice) - An intron with ends that are not \ GT/AG, GC/AG, or AT/AC. These are usually artifacts of some sort due to \ sequencing error or polymorphism.\
    \ \

    Credits

    \

    This track is based on an analysis by the txgAnalyse program of splicing graphs\ produced by the txGraph program. Both of these programs were written by Jim\ Kent at UCSC.

    \ genes 1 color 90,0,150\ group genes\ longLabel Alternative Splicing, Alternative Promoter and Similar Events in UCSC Genes\ noScoreFilter .\ shortLabel UCSC Alt Events\ track knownAlt\ type bed 6 .\ visibility hide\ umap Umap bigWig Single-read and multi-read mappability by Umap 2 100 0 0 0 127 127 127 0 0 0

    Description

    \

    \ These tracks indicate regions with uniquely mappable reads of particular lengths before and after\ bisulfite conversion. Both Umap and Bismap tracks contain single-read mappability and multi-read\ mappability tracks for four different read lengths: 24 bp, 36 bp, 50 bp, and 100 bp.

    \

    \ You can use these tracks for many purposes, including filtering unreliable signal from\ sequencing assays. The Bismap track can help filter unreliable signal from sequencing assays\ involving bisulfite conversion, such as whole-genome bisulfite sequencing or reduced representation\ bisulfite sequencing.

    \ \ \

    Bismap single-read and multi-read mappability

    \
    \
    Bismap single-read mappability
    \
    \

    These tracks mark any region of the bisulfite-converted genome that is uniquely mappable by\ at least one k-mer on the specified strand. Mappability of the forward strand was\ generated by converting all instances of cytosine to thymine. Similarly, mappability of the\ reverse strand was generated by converting all instances of guanine to adenine.

    \

    To calculate the single-read mappability, you must find the overlap of a given region with\ the region that is uniquely mappable on both strands. Regions not uniquely mappable on both\ strands or have a low multi-read mappability might bias the downstream analysis.

    \
    Bismap multi-read mappability
    \
    \

    These tracks represent the probability that a randomly selected k-mer which overlaps\ with a given position is uniquely mappable. Multi-read mappability track is calculated for\ k-mers that are uniquely mappable on both strands, and thus there is no strand\ specification.

    \
    \ \ \

    Umap single-read and multi-read mappability

    \
    \
    Umap single-read mappability
    \
    \

    These tracks mark any region of the genome that is uniquely mappable by at least one\ k-mer. To calculate the single-read mappability, you must find the overlap of a given\ region with this track.

    \
    Umap multi-read mappability
    \
    \

    These tracks represent the probability that a randomly selected k-mer which overlaps\ with a given position is uniquely mappable.

    \
    \ \

    For greater detail and explanatory diagrams, see the\ preprint, the\ Umap and Bismap project website, or the\ Umap and Bismap software\ documentation.\ \

    Data Access

    \

    \ The raw data can be explored interactively with the Table Browser, or the Data Integrator. For automated analysis, genome annotation is stored in a bigBed\ or bigWig file that can be downloaded from the\ download\ server. Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed or bigWigToWig, which can be compiled from the source code or\ downloaded as a precompiled binary for your system. Instructions for downloading source code and\ binaries can be found here.\ The tool can also be used to obtain only features within a given range, for example:

    \ bigBedToBed -chrom=chr6 -start=0 -end=1000000\ http://hgdownload.soe.ucsc.edu/gbdb/hg38/hoffmanMappability/k24.Unique.Mappability.bb stdout\
    \ bigWigToWig -chrom=chr6 -start=0 -end=1000000\ http://hgdownload.soe.ucsc.edu/gbdb/hg38/hoffmanMappability/k24.Umap.MultiTrackMappability.bw\ stdout\

    \ Please refer to our mailing list archives for questions, or our\ Data Access FAQ for more\ information.

    \ \

    Credits

    \

    \ Anshul Kundaje (Stanford\ University) created the original Umap software in MATLAB. The original Umap repository is available\ here.\ Mehran Karimzadeh (Michael Hoffman\ lab, Princess Margaret Cancer Centre) implemented the Python version of Umap and added features,\ including Bismap.

    \ \

    References

    \

    \ Karimzadeh M, Ernst C, Kundaje A, Hoffman MM.,\ Umap and Bismap:\ quantifying genome and methylome mappability\ bioRxiv bioRxiv, p. 095463, 2016.; doi: https://doi.org/10.1101/095463.

    \ map 0 compositeTrack on\ group map\ html mappability\ longLabel Single-read and multi-read mappability by Umap\ parent mappability\ shortLabel Umap\ subGroup1 view Views SR=Single-read MR=Multi-read\ track umap\ type bigWig\ visibility full\ umapBigBed Umap bigBed 6 Single-read and multi-read mappability by Umap 4 100 0 0 0 127 127 127 0 0 0 map 1 longLabel Single-read and multi-read mappability by Umap\ parent umap on\ shortLabel Umap\ track umapBigBed\ type bigBed 6\ view SR\ visibility squish\ umapBigWig Umap bigWig Single-read and multi-read mappability by Umap 2 100 0 0 0 127 127 127 0 0 0 map 0 longLabel Single-read and multi-read mappability by Umap\ parent umap on\ shortLabel Umap\ track umapBigWig\ type bigWig\ view MR\ viewLimits 0:1\ visibility full\ uniprot UniProt bigBed 12 + UniProt SwissProt/TrEMBL Protein Annotations 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \

    \ This track shows protein sequences and annotations on them from the UniProt/SwissProt database,\ mapped to genomic coordinates. \

    \

    \ UniProt/SwissProt data has been curated from scientific publications by the UniProt staff,\ UniProt/TrEMBL data has been predicted by various computational algorithms.\ The annotations are divided into multiple subtracks, based on their "feature type" in UniProt.\ The first two subtracks below - one for SwissProt, one for TrEMBL - show the\ alignments of protein sequences to the genome, all other tracks below are the protein annotations\ mapped through these alignments to the genome.\

    \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \ \
    Track NameDescription
    UCSC Alignment, SwissProt = curated protein sequencesProtein sequences from SwissProt mapped to the genome. All other\ tracks are (start,end) SwissProt annotations on these sequences mapped\ through this alignment. Even protein sequences without a single curated \ annotation (splice isoforms) are visible in this track. Each UniProt protein \ has one main isoform, which is colored in dark. Alternative isoforms are \ sequences that do not have annotations on them and are colored in light-blue. \ They can be hidden with the TrEMBL/Isoform filter (see below).
    UCSC Alignment, TrEMBL = predicted protein sequencesProtein sequences from TrEMBL mapped to the genome. All other tracks\ below are (start,end) TrEMBL annotations mapped to the genome using\ this track. This track is hidden by default. To show it, click its\ checkbox on the track configuration page.
    UniProt Signal PeptidesRegions found in proteins destined to be secreted, generally cleaved from mature protein.
    UniProt Extracellular DomainsProtein domains with the comment "Extracellular".
    UniProt Transmembrane DomainsProtein domains of the type "Transmembrane".
    UniProt Cytoplasmic DomainsProtein domains with the comment "Cytoplasmic".
    UniProt Polypeptide ChainsPolypeptide chain in mature protein after post-processing.
    UniProt Regions of InterestRegions that have been experimentally defined, such as the role of a region in mediating protein-protein interactions or some other biological process.
    UniProt DomainsProtein domains, zinc finger regions and topological domains.
    UniProt Disulfide BondsDisulfide bonds.
    UniProt Amino Acid ModificationsGlycosylation sites, modified residues and lipid moiety-binding regions.
    UniProt Amino Acid MutationsMutagenesis sites and sequence variants.
    UniProt Protein Primary/Secondary Structure AnnotationsBeta strands, helices, coiled-coil regions and turns.
    UniProt Sequence ConflictsDifferences between Genbank sequences and the UniProt sequence.
    UniProt RepeatsRegions of repeated sequence motifs or repeated domains.
    UniProt Other AnnotationsAll other annotations, e.g. compositional bias
    \

    \ For consistency and convenience for users of mutation-related tracks,\ the subtrack "UniProt/SwissProt Variants" is a copy of the track\ "UniProt Variants" in the track group "Phenotype and Literature", or \ "Variation and Repeats", depending on the assembly.\

    \ \

    Display Conventions and Configuration

    \ \

    \ Genomic locations of UniProt/SwissProt annotations are labeled with a short name for\ the type of annotation (e.g. "glyco", "disulf bond", "Signal peptide"\ etc.). A click on them shows the full annotation and provides a link to the UniProt/SwissProt\ record for more details. TrEMBL annotations are always shown in \ light blue, except in the Signal Peptides,\ Extracellular Domains, Transmembrane Domains, and Cytoplamsic domains subtracks.

    \ \

    \ Mouse over a feature to see the full UniProt annotation comment. For variants, the mouse over will\ show the full name of the UniProt disease acronym.\

    \ \

    \ The subtracks for domains related to subcellular location are sorted from outside to inside of \ the cell: Signal peptide, \ extracellular, \ transmembrane, and cytoplasmic.\

    \ \

    \ Features in the "UniProt Modifications" (modified residues) track are drawn in \ light green. Disulfide bonds are shown in \ dark grey. Topological domains\ in maroon and zinc finger regions in \ olive green.\

    \ \

    \ Duplicate annotations are removed as far as possible: if a TrEMBL annotation\ has the same genome position and same feature type, comment, disease and\ mutated amino acids as a SwissProt annotation, it is not shown again. Two\ annotations mapped through different protein sequence alignments but with the same genome\ coordinates are only shown once.

    \ \

    On the configuration page of this track, you can choose to hide any TrEMBL annotations.\ This filter will also hide the UniProt alternative isoform protein sequences because\ both types of information are less relevant to most users. Please contact us if you\ want more detailed filtering features.

    \ \

    Note that for the human hg38 assembly and SwissProt annotations, there\ also is a public\ track hub prepared by UniProt itself, with \ genome annotations maintained by UniProt using their own mapping\ method based on those Gencode/Ensembl gene models that are annotated in UniProt\ for a given protein. For proteins that differ from the genome, UniProt's mapping method\ will, in most cases, map a protein and its annotations to an unexpected location\ (see below for details on UCSC's mapping method).

    \ \

    Methods

    \ \

    \ Briefly, UniProt protein sequences were aligned to the transcripts associated\ with the protein, the top-scoring alignments were retained, and the result was\ projected to the genome through a transcript-to-genome alignment.\ Depending on the genome, the transcript-genome alignments was either\ provided by the source database (NBCI RefSeq), created at UCSC (UCSC RefSeq) or\ derived from the transcripts (Ensembl/Augustus). The transcript set is NCBI\ RefSeq for hg38, UCSC RefSeq for hg19 (due to alt/fix haplotype misplacements \ in the NCBI RefSeq set on hg19). For other genomes, RefSeq, Ensembl and Augustus \ are tried, in this order. The resulting protein-genome alignments of this process \ are available in the file formats for liftOver or pslMap from our data archive\ (see "Data Access" section below).\

    \ \

    An important step of the mapping process protein -> transcript ->\ genome is filtering the alignment from protein to transcript. Due to\ differences between the UniProt proteins and the transcripts (proteins were\ made many years before the transcripts were made, and human genomes have\ variants), the transcript with the highest BLAST score when aligning the\ protein to all transcripts is not always the correct transcript for a protein\ sequence. Therefore, the protein sequence is aligned to only a very short list\ of one or sometimes more transcripts, selected by a three-step procedure:\

      \
    1. Use transcripts directly annotated by UniProt: for organisms that have a RefSeq transcript track,\ proteins are aligned to the RefSeq transcripts that are annotated\ by UniProt for this particular protein.\
    2. Use transcripts for NCBI Gene ID annotated by UniProt: If no transcripts are annotated on the\ protein, or the annotated ones have been deprecated by NCBI, but a NCBI Gene ID is\ annotated, the RefSeq transcripts for this Gene ID are used. This can result in multiple matching transcripts for a protein.\
    3. Use best matching transcript: If no NCBI Gene is\ annotated, then BLAST scores are used to pick the transcripts. There can be multiple transcripts for one\ protein, as their coding sequences can be identical. All transcripts within 1% of the highest observed BLAST score are used.\
    \

    \ \

    \ For strategy 2 and 3, many of the transcripts found do not differ in coding\ sequence, so the resulting alignments on the genome will be identical.\ Therefore, any identical alignments are removed in a final filtering step. The\ details page of these alignments will contain a list of all transcripts that\ result in the same protein-genome alignment. On hg38, only a handful of edge\ cases (pseudogenes, very recently added proteins) remain in 2023 where strategy\ 3 has to be used.

    \ \

    In other words, when an NCBI or UCSC RefSeq track is used for the mapping and to align a\ protein sequence to the correct transcript, we use a three stage process:\

      \
    1. If UniProt has annotated a given RefSeq transcript for a given protein\ sequence, the protein is aligned to this transcript. Any difference in the\ version suffix is tolerated in this comparison. \
    2. If no transcript is annotated or the transcript cannot be found in the\ NCBI/UCSC RefSeq track, the UniProt-annotated NCBI Gene ID is resolved to a\ set of NCBI RefSeq transcript IDs via the most current version of NCBI\ genes tables. Only the top match of the resulting alignments and all\ others within 1% of its score are used for the mapping.\
    3. If no transcript can be found after step (2), the protein is aligned to all transcripts,\ the top match, and all others within 1% of its score are used.\
    \ \

    This system was designed to resolve the problem of incorrect mappings of\ proteins, mostly on hg38, due to differences between the SwissProt\ sequences and the genome reference sequence, which has changed since the\ proteins were defined. The problem is most pronounced for gene families\ composed of either very repetitive or very similar proteins. To make sure that\ the alignments always go to the best chromosome location, all _alt and _fix\ reference patch sequences are ignored for the alignment, so the patches are\ entirely free of UniProt annotations. Please contact us if you have feedback on\ this process or example edge cases. We are not aware of a way to evaluate the\ results completely and in an automated manner.

    \

    \ Proteins were aligned to transcripts with TBLASTN, converted to PSL, filtered\ with pslReps (93% query coverage, keep alignments within top 1% score), lifted to genome\ positions with pslMap and filtered again with pslReps. UniProt annotations were\ obtained from the UniProt XML file. The UniProt annotations were then mapped to the\ genome through the alignment described above using the pslMap program. This approach\ draws heavily on the LS-SNP pipeline by Mark Diekhans.\ Like all Genome Browser source code, the main script used to build this track\ can be found on Github.\

    \ \

    Older releases

    \

    \ This track is automatically updated on an ongoing basis, every 2-3 months.\ The current version name is always shown on the track details page, it includes the\ release of UniProt, the version of the transcript set and a unique MD5 that is\ based on the protein sequences, the transcript sequences, the mapping file\ between both and the transcript-genome alignment. The exact transcript\ that was used for the alignment is shown when clicking a protein alignment\ in one of the two alignment tracks.\

    \ \

    \ For reproducibility of older analysis results and for manual inspection, previous versions of this track\ are available for browsing in the form of the UCSC UniProt Archive Track Hub (click this link to connect the hub now). The underlying data of\ all releases of this track (past and current) can be obtained from our downloads server, including the UniProt\ protein-to-genome alignment.

    \ \

    Data Access

    \ \

    \ The raw data of the current track can be explored interactively with the\ Table Browser, or the\ Data Integrator.\ For automated analysis, the genome annotation is stored in a bigBed file that \ can be downloaded from the\ download server.\ The exact filenames can be found in the \ track configuration file. \ Annotations can be converted to ASCII text by our tool bigBedToBed\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, for example:\

    \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/uniprot/unipStruct.bb -chrom=chr6 -start=0 -end=1000000 stdout \

    \ Please refer to our\ mailing list archives\ for questions, or our\ Data Access FAQ\ for more information. \

    \ \

    \ \

    Lifting from UniProt to genome coordinates in pipelines

    \

    To facilitate mapping protein coordinates to the genome, we provide the\ alignment files in formats that are suitable for our command line tools. Our\ command line programs liftOver or pslMap can be used to map\ coordinates on protein sequences to genome coordinates. The filenames are\ unipToGenome.over.chain.gz (liftOver) and unipToGenomeLift.psl.gz (pslMap).

    \ \

    Example commands:\ 

    \
wget -q https://hgdownload.soe.ucsc.edu/goldenPath/archive/hg38/uniprot/2022_03/unipToGenome.over.chain.gz\
wget -q https://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/liftOver\
chmod a+x liftOver\
echo 'Q99697 1 10 annotationOnProtein' > prot.bed\
liftOver prot.bed unipToGenome.over.chain.gz genome.bed\
cat genome.bed\
    \

    \ \

    Credits

    \ \

    \ This track was created by Maximilian Haeussler at UCSC, with a lot of input from Chris\ Lee, Mark Diekhans and Brian Raney, feedback from the UniProt staff, Alejo\ Mujica, Regeneron Pharmaceuticals and Pia Riestra, GeneDx. Thanks to UniProt for making all data\ available for download.\

    \ \

    References

    \ \

    \ UniProt Consortium.\ \ Reorganizing the protein space at the Universal Protein Resource (UniProt).\ Nucleic Acids Res. 2012 Jan;40(Database issue):D71-5.\ PMID: 22102590; PMC: PMC3245120\

    \ \

    \ Yip YL, Scheib H, Diemand AV, Gattiker A, Famiglietti LM, Gasteiger E, Bairoch A.\ \ The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure\ information on human protein variants.\ Hum Mutat. 2004 May;23(5):464-70.\ PMID: 15108278\

    \ genes 1 allButtonPair on\ compositeTrack on\ dataVersion /gbdb/$D/uniprot/version.txt\ exonNumbers off\ group genes\ hideEmptySubtracks off\ itemRgb on\ longLabel UniProt SwissProt/TrEMBL Protein Annotations\ mouseOverField comments\ shortLabel UniProt\ track uniprot\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#section_features" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility hide\ spMut UniProt Variants bigBed 12 + UniProt/SwissProt Amino Acid Substitutions 0 100 0 0 0 127 127 127 0 0 0

    Description

    \ \
    \

    NOTE:
    \ This track is intended for use primarily by physicians and other\ professionals concerned with genetic disorders, by genetics researchers, and\ by advanced students in science and medicine. While the genome browser database\ is open to the public, users seeking information about a personal medical or\ genetic condition are urged to consult with a qualified physician for\ diagnosis and for answers to personal questions.

    \ \

    \ This track shows the genomic positions of natural and artifical amino acid variants\ in the UniProt/SwissProt database.\ The data has been curated from scientific publications by the UniProt staff.\

    \ \

    Display Conventions and Configuration

    \ \

    \ Genomic locations of UniProt/SwissProt variants are labeled with the amino acid\ change at a given position and, if known, the abbreviated disease name. A\ "?" is used if there is no disease annotated at this location, but the\ protein is described as being linked to only a single disease in UniProt.\

    \ \

    \ Mouse over a mutation to see the UniProt comments.\

    \ \

    \ Artificially-introduced mutations are colored green and naturally-occurring variants are colored\ red. For full information about a particular variant, click the "UniProt variant" linkout. \ The "UniProt record" linkout lists all variants of a particular protein sequence.\ The "Source articles" linkout lists the articles in PubMed that originally described\ the variant(s) and were used as evidence by the UniProt curators.\

    \ \

    Methods

    \ \

    \ UniProt sequences were aligned to RefSeq sequences first with BLAT, then lifted\ to genome positions with pslMap. UniProt variants were parsed from the UniProt\ XML file. The variants were then mapped to the genome through the alignment\ using the pslMap program. This mapping approach\ draws heavily on the LS-SNP pipeline by Mark Diekhans. The complete script is\ part of the kent source tree and is located in src/hg/utils/uniprotMutations. \

    \ \

    Data Access

    \ \

    \ The raw data can be explored interactively with the\ Table Browser, or the\ Data Integrator.\ For automated analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from the\ download server.\ The underlying data file for this track is called spMut.bb. Individual \ regions or the whole genome annotation can be obtained using our tool bigBedToBed \ which can be compiled from the source code or downloaded as a precompiled binary\ for your system. Instructions for downloading source code and binaries can be found\ here. \ The tool can also be used to obtain only features within a given range, for example:\
    \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/bbi/uniprot/spMut.bb -chrom=chr6 -start=0 -end=1000000 stdout \
    \ Please refer to our\ mailing list archives\ for questions, or our\ Data Access FAQ\ for more information. \

    \ \ \

    Credits

    \ \

    \ This track was created by Maximilian Haeussler, with advice from Mark Diekhans and Brian Raney.\

    \ \

    References

    \ \

    \ UniProt Consortium.\ \ Reorganizing the protein space at the Universal Protein Resource (UniProt).\ Nucleic Acids Res. 2012 Jan;40(Database issue):D71-5.\ PMID: 22102590; PMC: PMC3245120\

    \ \

    \ Yip YL, Scheib H, Diemand AV, Gattiker A, Famiglietti LM, Gasteiger E, Bairoch A.\ \ The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure\ information on human protein variants.\ Hum Mutat. 2004 May;23(5):464-70.\ PMID: 15108278\

    \ phenDis 1 bigDataUrl /gbdb/hg38/uniprot/unipMut.bb\ exonNumbers off\ group phenDis\ itemRgb on\ longLabel UniProt/SwissProt Amino Acid Substitutions\ maxWindowCoverage 10000000\ mouseOverField comments\ noScoreFilter on\ shortLabel UniProt Variants\ track spMut\ type bigBed 12 +\ urls variationId="http://www.uniprot.org/uniprot/$$" uniProtId="http://www.uniprot.org/uniprot/$$" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility hide\ varsInPubs Variants in Papers bed 3 Genetic Variants mentioned in scientific publications 0 100 0 0 0 127 127 127 0 0 0

    Description

    \

    The tracks that are listed here contain genetic variants and links to scientific publications that \ mention them. The Mastermind track was created by Genomenom, a company that analyzes fulltext \ of publications with their own proprietary software with an unknown false\ positive rate. The AVADA track was created in the Bejerano lab at\ Stanford by J. Birgmeier also on fulltext papers, using sophisticated machine learning\ methods and was evaluated to have a false positive rate of around 50% in their study.\

    \ For additional information please click on the hyperlink of the respective track above.\

    Display conventions

    \

    \ By default, each variant is labeled with the nucleotide change. Hover over the\ feature to see more information, explained on the track details page of the particular track\ or when clicking onto the feature.

    \

    Credits

    \

    \ For data provenance, access and descriptions, please click the documentation via the link above.\

    \ phenDis 1 group phenDis\ longLabel Genetic Variants mentioned in scientific publications\ shortLabel Variants in Papers\ superTrack on\ track varsInPubs\ type bed 3\ vistaEnhancersBb VISTA Enhancers bigBed 9 + VISTA Enhancers 0 100 0 0 0 127 127 127 0 0 0 https://enhancer.lbl.gov/cgi-bin/imagedb3.pl?form=presentation&show=1&organism_id=1&experiment_id=$

    Description

    \ \

    This track shows potential enhancers whose activity was experimentally validated in transgenic\ mice. Most of these noncoding elements were selected for testing based on their extreme conservation\ in other vertebrates or epigenomic evidence (ChIP-Seq) of putative enhancer marks. More information\ can be found on the VISTA Enhancer Browser\ page.\

    \ \

    Display Conventions and Configuration

    \

    Items appearing in red (positive) indicate that a reproducible\ pattern was observed in the in vivo enhancer assay. Items appearing in\ blue (negative) indicate that NO reproducible pattern was observed\ in the in vivo enhancer assay. Note that this annotation refers only to the single developmental\ timepoint that was tested in this screen (e11.5) and does not exclude the possibility that this\ region is a reproducible enhancer active at earlier or later timepoints in development.\

    \ \

    Methods

    \

    Excerpted from the Vista Enhancer Mouse Enhancer Screen Handbook and Methods page at the Lawrence Berkeley\ National Laboratory (LBNL) website:\

    Enhancer Candidate Identification

    \

    Most enhancer candidate sequences are identified by extreme evolutionary sequence conservation or\ by ChIP-seq. Detailed information related to enhancer identification by extreme evolutionary\ conservation can be found in the following publications:\

    \ \ \

    Detailed information related to enhancer identification by ChIP-seq can be found in the\ following publications:

    \

    \ \

    See the Transgenic Mouse Assay section for experimental procedures that were used to perform the\ transgenic assays: Mouse Enhancer Screen Handbook and Methods \ \

    UCSC converted the\ Experimental Data for hg19 and mm9 into bigBed format using the bedToBigBed\ utility. The data for hg38 was lifted over from hg19. The data for mm10 and mm39 were lifted over\ from mm9.

    \ \

    Data Access

    \

    \ VISTA Enhancers data can be explored interactively with the\ Table Browser and cross-referenced with the\ Data Integrator. For programmatic access, the track can be\ accessed using the Genome Browser's REST API. ReMap\ annotations can be downloaded from the Genome Browser's\ download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.

    \ \

    Credits

    \

    Thanks to the Lawrence Berkeley National Laboratory for providing this data

    \ \ \

    References

    \

    \ Visel A, Minovitsky S, Dubchak I, Pennacchio LA.\ \ VISTA Enhancer Browser--a database of tissue-specific human enhancers.\ Nucleic Acids Res. 2007 Jan;35(Database issue):D88-92.\ PMID: 17130149; PMC: PMC1716724\

    \ regulation 1 bigDataUrl /gbdb/hg38/vistaEnhancers/vistaEnhancers.bb\ group regulation\ itemRgb on\ longLabel VISTA Enhancers\ shortLabel VISTA Enhancers\ track vistaEnhancersBb\ type bigBed 9 +\ url https://enhancer.lbl.gov/cgi-bin/imagedb3.pl?form=presentation&show=1&organism_id=1&experiment_id=$\ urlLabel View on the VISTA Enhancer Browser\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep3LK60_CNhs13586_tpm_fwd AorticSmsToIL1b_06hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep3 (LK60)_CNhs13586_12857-137D4_forward 1 101 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12857-137D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep3%20%28LK60%29.CNhs13586.12857-137D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep3 (LK60)_CNhs13586_12857-137D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12857-137D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_06hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep3LK60_CNhs13586_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12857-137D4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep3LK60_CNhs13586_ctss_fwd AorticSmsToIL1b_06hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep3 (LK60)_CNhs13586_12857-137D4_forward 0 101 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12857-137D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep3%20%28LK60%29.CNhs13586.12857-137D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep3 (LK60)_CNhs13586_12857-137D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12857-137D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_06hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep3LK60_CNhs13586_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12857-137D4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF771IAW GM12878 DPF2 narrowPeak Transcription Factor ChIP-seq Peaks of DPF2 in GM12878 from ENCODE 3 (ENCFF771IAW) 0 101 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of DPF2 in GM12878 from ENCODE 3 (ENCFF771IAW)\ parent encTfChipPk off\ shortLabel GM12878 DPF2\ subGroups cellType=GM12878 factor=DPF2\ track encTfChipPkENCFF771IAW\ chainHprcGCA_018504055v1 HG02080.pat chain GCA_018504055.1 HG02080.pat HG02080.alt.pat.f1_v2 (May 2021 GCA_018504055.1_HG02080.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 101 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02080.pat HG02080.alt.pat.f1_v2 (May 2021 GCA_018504055.1_HG02080.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504055.1\ parent hprcChainNetViewchain off\ priority 83\ shortLabel HG02080.pat\ subGroups view=chain sample=s083 population=eas subpop=khv hap=pat\ track chainHprcGCA_018504055v1\ type chain GCA_018504055.1\ hprcInsertsV1 Insertions bigBed 9 + Deletions in hg38 = Insertion in the HPRC assemblies 0 101 0 0 0 100 50 0 0 0 0 hprc 1 bigDataUrl /gbdb/hg38/hprcArrV1/hprcInsertsV1.bb\ filter.querySize 1\ group hprc\ itemRgb on\ labelFields label\ longLabel Deletions in hg38 = Insertion in the HPRC assemblies\ maxItems 100000\ mouseOverField _mouseover\ parent hprcArrV1\ priority 101\ shortLabel Insertions\ track hprcInsertsV1\ type bigBed 9 +\ visibility hide\ wgEncodeRegDnaseUwPanc1Hotspot PANC-1 Ht bigBed 6 + PANC-1 pancreatic carcinoma cell line DNaseI Hotspots from ENCODE 0 101 255 141 85 255 198 170 1 0 0 regulation 1 color 255,141,85\ longLabel PANC-1 pancreatic carcinoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel PANC-1 Ht\ subGroups view=b_Hot cellType=PANC-1 treatment=n_a tissue=pancreas cancer=cancer\ track wgEncodeRegDnaseUwPanc1Hotspot\ type bigBed 6 +\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep3LK60_CNhs13586_tpm_rev AorticSmsToIL1b_06hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep3 (LK60)_CNhs13586_12857-137D4_reverse 1 102 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12857-137D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep3%20%28LK60%29.CNhs13586.12857-137D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep3 (LK60)_CNhs13586_12857-137D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12857-137D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_06hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep3LK60_CNhs13586_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12857-137D4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep3LK60_CNhs13586_ctss_rev AorticSmsToIL1b_06hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep3 (LK60)_CNhs13586_12857-137D4_reverse 0 102 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12857-137D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep3%20%28LK60%29.CNhs13586.12857-137D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep3 (LK60)_CNhs13586_12857-137D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12857-137D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_06hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep3LK60_CNhs13586_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12857-137D4\ urlLabel FANTOM5 Details:\ hprcDeletionsV1 Deletions bigBed 9 + Insertions in hg38 = Deletion in the HPRC assemblies 0 102 0 0 0 100 50 0 0 0 0 hprc 1 bigDataUrl /gbdb/hg38/hprcArrV1/hprcDeletionsV1.bb\ exonArrows off\ filter.querySize 1\ filterLabel.querySize Minimum size of insertion in hg38\ group hprc\ itemRgb on\ labelFields label\ longLabel Insertions in hg38 = Deletion in the HPRC assemblies\ maxItems 100000\ mouseOverField _mouseover\ parent hprcArrV1\ priority 102\ shortLabel Deletions\ track hprcDeletionsV1\ type bigBed 9 +\ visibility hide\ encTfChipPkENCFF687SFB GM12878 E2F4 narrowPeak Transcription Factor ChIP-seq Peaks of E2F4 in GM12878 from ENCODE 3 (ENCFF687SFB) 0 102 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of E2F4 in GM12878 from ENCODE 3 (ENCFF687SFB)\ parent encTfChipPk off\ shortLabel GM12878 E2F4\ subGroups cellType=GM12878 factor=E2F4\ track encTfChipPkENCFF687SFB\ wgEncodeRegDnaseUwHct116Hotspot HCT-116 Ht bigBed 6 + HCT-116 colorectal carcinoma cell line DNaseI Hotspots from ENCODE 0 102 255 150 85 255 202 170 1 0 0 regulation 1 color 255,150,85\ longLabel HCT-116 colorectal carcinoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HCT-116 Ht\ subGroups view=b_Hot cellType=HCT-116 treatment=n_a tissue=colon cancer=cancer\ track wgEncodeRegDnaseUwHct116Hotspot\ type bigBed 6 +\ netHprcGCA_018504055v1 HG02080.pat netAlign GCA_018504055.1 chainHprcGCA_018504055v1 HG02080.pat HG02080.alt.pat.f1_v2 (May 2021 GCA_018504055.1_HG02080.alt.pat.f1_v2) HPRC project computed Chain Nets 1 102 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02080.pat HG02080.alt.pat.f1_v2 (May 2021 GCA_018504055.1_HG02080.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504055.1\ parent hprcChainNetViewnet off\ priority 83\ shortLabel HG02080.pat\ subGroups view=net sample=s083 population=eas subpop=khv hap=pat\ track netHprcGCA_018504055v1\ type netAlign GCA_018504055.1 chainHprcGCA_018504055v1\ encTfChipPkENCFF412GFI GM12878 E2F8 narrowPeak Transcription Factor ChIP-seq Peaks of E2F8 in GM12878 from ENCODE 3 (ENCFF412GFI) 0 103 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of E2F8 in GM12878 from ENCODE 3 (ENCFF412GFI)\ parent encTfChipPk off\ shortLabel GM12878 E2F8\ subGroups cellType=GM12878 factor=E2F8\ track encTfChipPkENCFF412GFI\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day00Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_forward 1 103 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep1%20%28UH-1%29.CNhs13694.13364-143F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13364-143F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day00Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_forward 0 103 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep1%20%28UH-1%29.CNhs13694.13364-143F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13364-143F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472825v1 HG03579.mat chain GCA_018472825.1 HG03579.mat HG03579.pri.mat.f1_v2 (May 2021 GCA_018472825.1_HG03579.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 103 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03579.mat HG03579.pri.mat.f1_v2 (May 2021 GCA_018472825.1_HG03579.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472825.1\ parent hprcChainNetViewchain off\ priority 31\ shortLabel HG03579.mat\ subGroups view=chain sample=s031 population=afr subpop=msl hap=mat\ track chainHprcGCA_018472825v1\ type chain GCA_018472825.1\ hprcArrInvBedV1 Inversions bigBed 9 + Inversions with respect to hg38 in HPRC assemblies 0 103 0 0 0 100 50 0 0 0 0 hprc 1 bigDataUrl /gbdb/hg38/hprcArrV1/hprcArrInvV1.bb\ exonArrows off\ itemRgb on\ labelFields label\ longLabel Inversions with respect to hg38 in HPRC assemblies\ maxItems 100000\ mouseOverField _mouseover\ parent hprcArrV1 on\ priority 103\ shortLabel Inversions\ track hprcArrInvBedV1\ type bigBed 9 +\ visibility hide\ wgEncodeRegDnaseUwNhberaHotspot NHBE_RA Ht bigBed 6 + NHBE_RA bronchial epithelium, RA treated DNaseI Hotspots from ENCODE 0 103 255 154 85 255 204 170 1 0 0 regulation 1 color 255,154,85\ longLabel NHBE_RA bronchial epithelium, RA treated DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel NHBE_RA Ht\ subGroups view=b_Hot cellType=NHBE_RA treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwNhberaHotspot\ type bigBed 6 +\ hprcArrDupBedV1 Duplications bigBed 9 + Duplications with respect to hg38 in HPRC assemblies 0 104 0 0 0 100 50 0 0 0 0 hprc 1 bigDataUrl /gbdb/hg38/hprcArrV1/hprcArrDupV1.bb\ exonArrows off\ itemRgb on\ labelFields label\ longLabel Duplications with respect to hg38 in HPRC assemblies\ maxItems 100000\ mouseOver # genomes in HPRC with duplication: $label\ parent hprcArrV1 on\ priority 104\ shortLabel Duplications\ track hprcArrDupBedV1\ type bigBed 9 +\ visibility hide\ encTfChipPkENCFF035GFS GM12878 E4F1 narrowPeak Transcription Factor ChIP-seq Peaks of E4F1 in GM12878 from ENCODE 3 (ENCFF035GFS) 0 104 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of E4F1 in GM12878 from ENCODE 3 (ENCFF035GFS)\ parent encTfChipPk off\ shortLabel GM12878 E4F1\ subGroups cellType=GM12878 factor=E4F1\ track encTfChipPkENCFF035GFS\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_tpm_rev Hes3-gfpCardiomyocyticInduction_Day00Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_reverse 1 104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep1%20%28UH-1%29.CNhs13694.13364-143F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13364-143F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_ctss_rev Hes3-gfpCardiomyocyticInduction_Day00Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_reverse 0 104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep1%20%28UH-1%29.CNhs13694.13364-143F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13364-143F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHffHotspot HFF Ht bigBed 6 + HFF foreskin fibroblast DNaseI Hotspots from ENCODE 0 104 255 163 85 255 209 170 1 0 0 regulation 1 color 255,163,85\ longLabel HFF foreskin fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HFF Ht\ subGroups view=b_Hot cellType=HFF treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwHffHotspot\ type bigBed 6 +\ netHprcGCA_018472825v1 HG03579.mat netAlign GCA_018472825.1 chainHprcGCA_018472825v1 HG03579.mat HG03579.pri.mat.f1_v2 (May 2021 GCA_018472825.1_HG03579.pri.mat.f1_v2) HPRC project computed Chain Nets 1 104 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03579.mat HG03579.pri.mat.f1_v2 (May 2021 GCA_018472825.1_HG03579.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472825.1\ parent hprcChainNetViewnet off\ priority 31\ shortLabel HG03579.mat\ subGroups view=net sample=s031 population=afr subpop=msl hap=mat\ track netHprcGCA_018472825v1\ type netAlign GCA_018472825.1 chainHprcGCA_018472825v1\ encTfChipPkENCFF249SVT GM12878 EBF1 narrowPeak Transcription Factor ChIP-seq Peaks of EBF1 in GM12878 from ENCODE 3 (ENCFF249SVT) 0 105 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of EBF1 in GM12878 from ENCODE 3 (ENCFF249SVT)\ parent encTfChipPk off\ shortLabel GM12878 EBF1\ subGroups cellType=GM12878 factor=EBF1\ track encTfChipPkENCFF249SVT\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day00Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_forward 1 105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep2%20%28UH-2%29.CNhs13695.13365-143F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13365-143F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day00Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_forward 0 105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep2%20%28UH-2%29.CNhs13695.13365-143F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13365-143F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHffmycHotspot HFF-Myc Ht bigBed 6 + HFF-Myc foreskin fibroblast cell line, cMyc DNaseI Hotspots from ENCODE 0 105 255 165 85 255 210 170 1 0 0 regulation 1 color 255,165,85\ longLabel HFF-Myc foreskin fibroblast cell line, cMyc DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HFF-Myc Ht\ subGroups view=b_Hot cellType=HFF-Myc treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwHffmycHotspot\ type bigBed 6 +\ chainHprcGCA_018472855v1 HG03453.mat chain GCA_018472855.1 HG03453.mat HG03453.pri.mat.f1_v2 (May 2021 GCA_018472855.1_HG03453.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 105 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03453.mat HG03453.pri.mat.f1_v2 (May 2021 GCA_018472855.1_HG03453.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472855.1\ parent hprcChainNetViewchain off\ priority 33\ shortLabel HG03453.mat\ subGroups view=chain sample=s033 population=afr subpop=msl hap=mat\ track chainHprcGCA_018472855v1\ type chain GCA_018472855.1\ hprcDoubleV1 Other Rearrangements bigBed 9 + Other Rearrangements: Unalignable sequences in both assemblies (inversions, partial transpositions) 0 105 0 0 0 100 50 0 0 0 0 hprc 1 bigDataUrl /gbdb/hg38/hprcArrV1/hprcDoubleV1.bb\ exonArrows off\ group hprc\ itemRgb on\ labelFields label\ longLabel Other Rearrangements: Unalignable sequences in both assemblies (inversions, partial transpositions)\ maxItems 100000\ mouseOverField _mouseover\ parent hprcArrV1\ priority 105\ shortLabel Other Rearrangements\ track hprcDoubleV1\ type bigBed 9 +\ visibility hide\ encTfChipPkENCFF023ALY GM12878 EED narrowPeak Transcription Factor ChIP-seq Peaks of EED in GM12878 from ENCODE 3 (ENCFF023ALY) 0 106 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of EED in GM12878 from ENCODE 3 (ENCFF023ALY)\ parent encTfChipPk off\ shortLabel GM12878 EED\ subGroups cellType=GM12878 factor=EED\ track encTfChipPkENCFF023ALY\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_tpm_rev Hes3-gfpCardiomyocyticInduction_Day00Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_reverse 1 106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep2%20%28UH-2%29.CNhs13695.13365-143F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13365-143F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_ctss_rev Hes3-gfpCardiomyocyticInduction_Day00Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_reverse 0 106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep2%20%28UH-2%29.CNhs13695.13365-143F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13365-143F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8\ urlLabel FANTOM5 Details:\ netHprcGCA_018472855v1 HG03453.mat netAlign GCA_018472855.1 chainHprcGCA_018472855v1 HG03453.mat HG03453.pri.mat.f1_v2 (May 2021 GCA_018472855.1_HG03453.pri.mat.f1_v2) HPRC project computed Chain Nets 1 106 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03453.mat HG03453.pri.mat.f1_v2 (May 2021 GCA_018472855.1_HG03453.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472855.1\ parent hprcChainNetViewnet off\ priority 33\ shortLabel HG03453.mat\ subGroups view=net sample=s033 population=afr subpop=msl hap=mat\ track netHprcGCA_018472855v1\ type netAlign GCA_018472855.1 chainHprcGCA_018472855v1\ wgEncodeRegDnaseUwNt2d1Hotspot NT2-D1 Ht bigBed 6 + NT2-D1 embryonal carcinoma (NTera2) cell line DNaseI Hotspots from ENCODE 0 106 255 173 85 255 214 170 1 0 0 regulation 1 color 255,173,85\ longLabel NT2-D1 embryonal carcinoma (NTera2) cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel NT2-D1 Ht\ subGroups view=b_Hot cellType=NT2-D1 treatment=n_a tissue=testis cancer=cancer\ track wgEncodeRegDnaseUwNt2d1Hotspot\ type bigBed 6 +\ wgEncodeRegDnaseUwBjHotspot BJ Ht bigBed 6 + BJ foreskin fibroblast cell line DNaseI Hotspots from ENCODE 0 107 255 184 85 255 219 170 1 0 0 regulation 1 color 255,184,85\ longLabel BJ foreskin fibroblast cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel BJ Ht\ subGroups view=b_Hot cellType=BJ treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwBjHotspot\ type bigBed 6 +\ encTfChipPkENCFF341EJT GM12878 EGR1 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in GM12878 from ENCODE 3 (ENCFF341EJT) 0 107 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of EGR1 in GM12878 from ENCODE 3 (ENCFF341EJT)\ parent encTfChipPk off\ shortLabel GM12878 EGR1\ subGroups cellType=GM12878 factor=EGR1\ track encTfChipPkENCFF341EJT\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day00Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_forward 1 107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep3%20%28UH-3%29.CNhs13738.13366-143F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13366-143F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day00Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_forward 0 107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep3%20%28UH-3%29.CNhs13738.13366-143F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13366-143F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9\ urlLabel FANTOM5 Details:\ chainHprcGCA_018503525v1 HG03486.mat chain GCA_018503525.1 HG03486.mat HG03486.pri.mat.f1_v2 (May 2021 GCA_018503525.1_HG03486.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 107 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03486.mat HG03486.pri.mat.f1_v2 (May 2021 GCA_018503525.1_HG03486.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018503525.1\ parent hprcChainNetViewchain off\ priority 36\ shortLabel HG03486.mat\ subGroups view=chain sample=s036 population=afr subpop=msl hap=mat\ track chainHprcGCA_018503525v1\ type chain GCA_018503525.1\ wgEncodeRegDnaseUwAg09309Hotspot AG09309 Ht bigBed 6 + AG09309 skin fibroblast DNaseI Hotspots from ENCODE 0 108 255 186 85 255 220 170 1 0 0 regulation 1 color 255,186,85\ longLabel AG09309 skin fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel AG09309 Ht\ subGroups view=b_Hot cellType=AG09309 treatment=n_a tissue=skin cancer=unknown\ track wgEncodeRegDnaseUwAg09309Hotspot\ type bigBed 6 +\ encTfChipPkENCFF948CPI GM12878 ELF1 narrowPeak Transcription Factor ChIP-seq Peaks of ELF1 in GM12878 from ENCODE 3 (ENCFF948CPI) 0 108 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ELF1 in GM12878 from ENCODE 3 (ENCFF948CPI)\ parent encTfChipPk off\ shortLabel GM12878 ELF1\ subGroups cellType=GM12878 factor=ELF1\ track encTfChipPkENCFF948CPI\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_tpm_rev Hes3-gfpCardiomyocyticInduction_Day00Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_reverse 1 108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep3%20%28UH-3%29.CNhs13738.13366-143F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13366-143F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_ctss_rev Hes3-gfpCardiomyocyticInduction_Day00Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_reverse 0 108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep3%20%28UH-3%29.CNhs13738.13366-143F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13366-143F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9\ urlLabel FANTOM5 Details:\ netHprcGCA_018503525v1 HG03486.mat netAlign GCA_018503525.1 chainHprcGCA_018503525v1 HG03486.mat HG03486.pri.mat.f1_v2 (May 2021 GCA_018503525.1_HG03486.pri.mat.f1_v2) HPRC project computed Chain Nets 1 108 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03486.mat HG03486.pri.mat.f1_v2 (May 2021 GCA_018503525.1_HG03486.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018503525.1\ parent hprcChainNetViewnet off\ priority 36\ shortLabel HG03486.mat\ subGroups view=net sample=s036 population=afr subpop=msl hap=mat\ track netHprcGCA_018503525v1\ type netAlign GCA_018503525.1 chainHprcGCA_018503525v1\ encTfChipPkENCFF432AQP GM12878 ELK1 narrowPeak Transcription Factor ChIP-seq Peaks of ELK1 in GM12878 from ENCODE 3 (ENCFF432AQP) 0 109 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ELK1 in GM12878 from ENCODE 3 (ENCFF432AQP)\ parent encTfChipPk off\ shortLabel GM12878 ELK1\ subGroups cellType=GM12878 factor=ELK1\ track encTfChipPkENCFF432AQP\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day01Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_forward 1 109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep1.CNhs13653.13328-143B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13328-143B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day01Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_forward 0 109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep1.CNhs13653.13328-143B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13328-143B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7\ urlLabel FANTOM5 Details:\ chainHprcGCA_018506165v1 HG03098.mat chain GCA_018506165.1 HG03098.mat HG03098.pri.mat.f1_v2 (May 2021 GCA_018506165.1_HG03098.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 109 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03098.mat HG03098.pri.mat.f1_v2 (May 2021 GCA_018506165.1_HG03098.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018506165.1\ parent hprcChainNetViewchain off\ priority 38\ shortLabel HG03098.mat\ subGroups view=chain sample=s038 population=afr subpop=msl hap=mat\ track chainHprcGCA_018506165v1\ type chain GCA_018506165.1\ wgEncodeRegDnaseUwHnpcepicHotspot HNPCEpiC Ht bigBed 6 + HNPCEpiC non-pigmented ciliary epithelium (NPCEC) DNaseI Hotspots from ENCODE 0 109 255 188 85 255 221 170 1 0 0 regulation 1 color 255,188,85\ longLabel HNPCEpiC non-pigmented ciliary epithelium (NPCEC) DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HNPCEpiC Ht\ subGroups view=b_Hot cellType=HNPCEpiC treatment=n_a tissue=eye cancer=normal\ track wgEncodeRegDnaseUwHnpcepicHotspot\ type bigBed 6 +\ encTfChipPkENCFF865UDD GM12878 EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in GM12878 from ENCODE 3 (ENCFF865UDD) 0 110 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of EP300 in GM12878 from ENCODE 3 (ENCFF865UDD)\ parent encTfChipPk off\ shortLabel GM12878 EP300 1\ subGroups cellType=GM12878 factor=EP300\ track encTfChipPkENCFF865UDD\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_tpm_rev Hes3-gfpCardiomyocyticInduction_Day01Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_reverse 1 110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep1.CNhs13653.13328-143B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13328-143B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_ctss_rev Hes3-gfpCardiomyocyticInduction_Day01Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_reverse 0 110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep1.CNhs13653.13328-143B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13328-143B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7\ urlLabel FANTOM5 Details:\ netHprcGCA_018506165v1 HG03098.mat netAlign GCA_018506165.1 chainHprcGCA_018506165v1 HG03098.mat HG03098.pri.mat.f1_v2 (May 2021 GCA_018506165.1_HG03098.pri.mat.f1_v2) HPRC project computed Chain Nets 1 110 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03098.mat HG03098.pri.mat.f1_v2 (May 2021 GCA_018506165.1_HG03098.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018506165.1\ parent hprcChainNetViewnet off\ priority 38\ shortLabel HG03098.mat\ subGroups view=net sample=s038 population=afr subpop=msl hap=mat\ track netHprcGCA_018506165v1\ type netAlign GCA_018506165.1 chainHprcGCA_018506165v1\ wgEncodeRegDnaseUwWi38Hotspot WI-38 Ht bigBed 6 + WI-38 embryonic lung fibroblast cell line DNaseI Hotspots from ENCODE 0 110 255 192 85 255 223 170 1 0 0 regulation 1 color 255,192,85\ longLabel WI-38 embryonic lung fibroblast cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel WI-38 Ht\ subGroups view=b_Hot cellType=WI-38 treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwWi38Hotspot\ type bigBed 6 +\ wgEncodeRegDnaseUwGm04503Hotspot GM04503 Ht bigBed 6 + GM04503 skin fibroblast DNaseI Hotspots from ENCODE 0 111 255 200 85 255 227 170 1 0 0 regulation 1 color 255,200,85\ longLabel GM04503 skin fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel GM04503 Ht\ subGroups view=b_Hot cellType=GM04503 treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwGm04503Hotspot\ type bigBed 6 +\ encTfChipPkENCFF080HJX GM12878 EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in GM12878 from ENCODE 3 (ENCFF080HJX) 0 111 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of EP300 in GM12878 from ENCODE 3 (ENCFF080HJX)\ parent encTfChipPk off\ shortLabel GM12878 EP300 2\ subGroups cellType=GM12878 factor=EP300\ track encTfChipPkENCFF080HJX\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day01Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_forward 1 111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep2.CNhs13712.13340-143D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13340-143D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day01Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_forward 0 111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep2.CNhs13712.13340-143D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13340-143D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472835v1 HG03579.pat chain GCA_018472835.1 HG03579.pat HG03579.alt.pat.f1_v2 (May 2021 GCA_018472835.1_HG03579.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 111 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03579.pat HG03579.alt.pat.f1_v2 (May 2021 GCA_018472835.1_HG03579.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472835.1\ parent hprcChainNetViewchain off\ priority 32\ shortLabel HG03579.pat\ subGroups view=chain sample=s032 population=afr subpop=msl hap=pat\ track chainHprcGCA_018472835v1\ type chain GCA_018472835.1\ wgEncodeRegDnaseUwGm04504Hotspot GM04504 Ht bigBed 6 + GM04504 skin fibroblast DNaseI Hotspots from ENCODE 0 112 255 204 85 255 229 170 1 0 0 regulation 1 color 255,204,85\ longLabel GM04504 skin fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel GM04504 Ht\ subGroups view=b_Hot cellType=GM04504 treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwGm04504Hotspot\ type bigBed 6 +\ encTfChipPkENCFF510FUM GM12878 EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in GM12878 from ENCODE 3 (ENCFF510FUM) 0 112 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of EP300 in GM12878 from ENCODE 3 (ENCFF510FUM)\ parent encTfChipPk off\ shortLabel GM12878 EP300 3\ subGroups cellType=GM12878 factor=EP300\ track encTfChipPkENCFF510FUM\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_tpm_rev Hes3-gfpCardiomyocyticInduction_Day01Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_reverse 1 112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep2.CNhs13712.13340-143D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13340-143D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_ctss_rev Hes3-gfpCardiomyocyticInduction_Day01Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_reverse 0 112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep2.CNhs13712.13340-143D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13340-143D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1\ urlLabel FANTOM5 Details:\ netHprcGCA_018472835v1 HG03579.pat netAlign GCA_018472835.1 chainHprcGCA_018472835v1 HG03579.pat HG03579.alt.pat.f1_v2 (May 2021 GCA_018472835.1_HG03579.alt.pat.f1_v2) HPRC project computed Chain Nets 1 112 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03579.pat HG03579.alt.pat.f1_v2 (May 2021 GCA_018472835.1_HG03579.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472835.1\ parent hprcChainNetViewnet off\ priority 32\ shortLabel HG03579.pat\ subGroups view=net sample=s032 population=afr subpop=msl hap=pat\ track netHprcGCA_018472835v1\ type netAlign GCA_018472835.1 chainHprcGCA_018472835v1\ encTfChipPkENCFF722LJP GM12878 ESRRA narrowPeak Transcription Factor ChIP-seq Peaks of ESRRA in GM12878 from ENCODE 3 (ENCFF722LJP) 0 113 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ESRRA in GM12878 from ENCODE 3 (ENCFF722LJP)\ parent encTfChipPk off\ shortLabel GM12878 ESRRA\ subGroups cellType=GM12878 factor=ESRRA\ track encTfChipPkENCFF722LJP\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day01Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_forward 1 113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep3.CNhs13725.13352-143E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13352-143E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day01Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_forward 0 113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep3.CNhs13725.13352-143E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13352-143E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4\ urlLabel FANTOM5 Details:\ chainHprcGCA_018473305v1 HG03453.pat chain GCA_018473305.1 HG03453.pat HG03453.alt.pat.f1_v2 (May 2021 GCA_018473305.1_HG03453.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 113 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03453.pat HG03453.alt.pat.f1_v2 (May 2021 GCA_018473305.1_HG03453.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018473305.1\ parent hprcChainNetViewchain off\ priority 34\ shortLabel HG03453.pat\ subGroups view=chain sample=s034 population=afr subpop=msl hap=pat\ track chainHprcGCA_018473305v1\ type chain GCA_018473305.1\ wgEncodeRegDnaseUwNhlfHotspot NHLF Ht bigBed 6 + NHLF lung fibroblast DNaseI Hotspots from ENCODE 0 113 255 209 85 255 232 170 1 0 0 regulation 1 color 255,209,85\ longLabel NHLF lung fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot on\ shortLabel NHLF Ht\ subGroups view=b_Hot cellType=NHLF treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwNhlfHotspot\ type bigBed 6 +\ encTfChipPkENCFF980VOD GM12878 ETS1 narrowPeak Transcription Factor ChIP-seq Peaks of ETS1 in GM12878 from ENCODE 3 (ENCFF980VOD) 0 114 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ETS1 in GM12878 from ENCODE 3 (ENCFF980VOD)\ parent encTfChipPk off\ shortLabel GM12878 ETS1\ subGroups cellType=GM12878 factor=ETS1\ track encTfChipPkENCFF980VOD\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_tpm_rev Hes3-gfpCardiomyocyticInduction_Day01Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_reverse 1 114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep3.CNhs13725.13352-143E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13352-143E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_ctss_rev Hes3-gfpCardiomyocyticInduction_Day01Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_reverse 0 114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep3.CNhs13725.13352-143E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13352-143E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4\ urlLabel FANTOM5 Details:\ netHprcGCA_018473305v1 HG03453.pat netAlign GCA_018473305.1 chainHprcGCA_018473305v1 HG03453.pat HG03453.alt.pat.f1_v2 (May 2021 GCA_018473305.1_HG03453.alt.pat.f1_v2) HPRC project computed Chain Nets 1 114 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03453.pat HG03453.alt.pat.f1_v2 (May 2021 GCA_018473305.1_HG03453.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018473305.1\ parent hprcChainNetViewnet off\ priority 34\ shortLabel HG03453.pat\ subGroups view=net sample=s034 population=afr subpop=msl hap=pat\ track netHprcGCA_018473305v1\ type netAlign GCA_018473305.1 chainHprcGCA_018473305v1\ wgEncodeRegDnaseUwNhaHotspot NH-A Ht bigBed 6 + NH-A astrocyte DNaseI Hotspots from ENCODE 0 114 255 210 85 255 232 170 1 0 0 regulation 1 color 255,210,85\ longLabel NH-A astrocyte DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel NH-A Ht\ subGroups view=b_Hot cellType=NH-A treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwNhaHotspot\ type bigBed 6 +\ encTfChipPkENCFF116AMK GM12878 ETV6 1 narrowPeak Transcription Factor ChIP-seq Peaks of ETV6 in GM12878 from ENCODE 3 (ENCFF116AMK) 0 115 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ETV6 in GM12878 from ENCODE 3 (ENCFF116AMK)\ parent encTfChipPk off\ shortLabel GM12878 ETV6 1\ subGroups cellType=GM12878 factor=ETV6\ track encTfChipPkENCFF116AMK\ wgEncodeRegDnaseUwHbmecHotspot HBMEC Ht bigBed 6 + HBMEC brain microvascular endothelial cell (MEC) DNaseI Hotspots from ENCODE 0 115 255 214 85 255 234 170 1 0 0 regulation 1 color 255,214,85\ longLabel HBMEC brain microvascular endothelial cell (MEC) DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HBMEC Ht\ subGroups view=b_Hot cellType=HBMEC treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHbmecHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day02Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_forward 1 115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep1.CNhs13654.13329-143B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13329-143B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day02Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_forward 0 115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep1.CNhs13654.13329-143B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13329-143B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8\ urlLabel FANTOM5 Details:\ chainHprcGCA_018503245v1 HG03486.pat chain GCA_018503245.1 HG03486.pat HG03486.alt.pat.f1_v2 (May 2021 GCA_018503245.1_HG03486.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 115 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03486.pat HG03486.alt.pat.f1_v2 (May 2021 GCA_018503245.1_HG03486.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018503245.1\ parent hprcChainNetViewchain off\ priority 35\ shortLabel HG03486.pat\ subGroups view=chain sample=s035 population=afr subpop=msl hap=pat\ track chainHprcGCA_018503245v1\ type chain GCA_018503245.1\ wgEncodeRegDnaseUwAg09319Hotspot AG09319 Ht bigBed 6 + AG09319 gingival fibroblast DNaseI Hotspots from ENCODE 0 116 255 221 85 255 238 170 1 0 0 regulation 1 color 255,221,85\ longLabel AG09319 gingival fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel AG09319 Ht\ subGroups view=b_Hot cellType=AG09319 treatment=n_a tissue=periodontium cancer=normal\ track wgEncodeRegDnaseUwAg09319Hotspot\ type bigBed 6 +\ encTfChipPkENCFF745ANU GM12878 ETV6 2 narrowPeak Transcription Factor ChIP-seq Peaks of ETV6 in GM12878 from ENCODE 3 (ENCFF745ANU) 0 116 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ETV6 in GM12878 from ENCODE 3 (ENCFF745ANU)\ parent encTfChipPk off\ shortLabel GM12878 ETV6 2\ subGroups cellType=GM12878 factor=ETV6\ track encTfChipPkENCFF745ANU\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_tpm_rev Hes3-gfpCardiomyocyticInduction_Day02Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_reverse 1 116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep1.CNhs13654.13329-143B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13329-143B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_ctss_rev Hes3-gfpCardiomyocyticInduction_Day02Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_reverse 0 116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep1.CNhs13654.13329-143B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13329-143B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8\ urlLabel FANTOM5 Details:\ netHprcGCA_018503245v1 HG03486.pat netAlign GCA_018503245.1 chainHprcGCA_018503245v1 HG03486.pat HG03486.alt.pat.f1_v2 (May 2021 GCA_018503245.1_HG03486.alt.pat.f1_v2) HPRC project computed Chain Nets 1 116 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03486.pat HG03486.alt.pat.f1_v2 (May 2021 GCA_018503245.1_HG03486.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018503245.1\ parent hprcChainNetViewnet off\ priority 35\ shortLabel HG03486.pat\ subGroups view=net sample=s035 population=afr subpop=msl hap=pat\ track netHprcGCA_018503245v1\ type netAlign GCA_018503245.1 chainHprcGCA_018503245v1\ encTfChipPkENCFF615NYO GM12878 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in GM12878 from ENCODE 3 (ENCFF615NYO) 0 117 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of EZH2 in GM12878 from ENCODE 3 (ENCFF615NYO)\ parent encTfChipPk off\ shortLabel GM12878 EZH2\ subGroups cellType=GM12878 factor=EZH2\ track encTfChipPkENCFF615NYO\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day02Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_forward 1 117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep2.CNhs13714.13341-143D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13341-143D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day02Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_forward 0 117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep2.CNhs13714.13341-143D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13341-143D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2\ urlLabel FANTOM5 Details:\ chainHprcGCA_018506155v1 HG03098.pat chain GCA_018506155.1 HG03098.pat HG03098.alt.pat.f1_v2 (May 2021 GCA_018506155.1_HG03098.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 117 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03098.pat HG03098.alt.pat.f1_v2 (May 2021 GCA_018506155.1_HG03098.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018506155.1\ parent hprcChainNetViewchain off\ priority 37\ shortLabel HG03098.pat\ subGroups view=chain sample=s037 population=afr subpop=msl hap=pat\ track chainHprcGCA_018506155v1\ type chain GCA_018506155.1\ wgEncodeRegDnaseUwHpdlfHotspot HPdLF Ht bigBed 6 + HPdLF periodontal ligament fibroblast DNaseI Hotspots from ENCODE 0 117 255 224 85 255 239 170 1 0 0 regulation 1 color 255,224,85\ longLabel HPdLF periodontal ligament fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HPdLF Ht\ subGroups view=b_Hot cellType=HPdLF treatment=n_a tissue=periodontium cancer=normal\ track wgEncodeRegDnaseUwHpdlfHotspot\ type bigBed 6 +\ encTfChipPkENCFF990MTR GM12878 FOXK2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXK2 in GM12878 from ENCODE 3 (ENCFF990MTR) 0 118 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of FOXK2 in GM12878 from ENCODE 3 (ENCFF990MTR)\ parent encTfChipPk off\ shortLabel GM12878 FOXK2\ subGroups cellType=GM12878 factor=FOXK2\ track encTfChipPkENCFF990MTR\ wgEncodeRegDnaseUwHcfHotspot HCF Ht bigBed 6 + HCF cardiac fibroblast DNaseI Hotspots from ENCODE 0 118 255 229 85 255 242 170 1 0 0 regulation 1 color 255,229,85\ longLabel HCF cardiac fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HCF Ht\ subGroups view=b_Hot cellType=HCF treatment=n_a tissue=heart cancer=normal\ track wgEncodeRegDnaseUwHcfHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_tpm_rev Hes3-gfpCardiomyocyticInduction_Day02Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_reverse 1 118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep2.CNhs13714.13341-143D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13341-143D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_ctss_rev Hes3-gfpCardiomyocyticInduction_Day02Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_reverse 0 118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep2.CNhs13714.13341-143D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13341-143D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2\ urlLabel FANTOM5 Details:\ netHprcGCA_018506155v1 HG03098.pat netAlign GCA_018506155.1 chainHprcGCA_018506155v1 HG03098.pat HG03098.alt.pat.f1_v2 (May 2021 GCA_018506155.1_HG03098.alt.pat.f1_v2) HPRC project computed Chain Nets 1 118 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03098.pat HG03098.alt.pat.f1_v2 (May 2021 GCA_018506155.1_HG03098.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018506155.1\ parent hprcChainNetViewnet off\ priority 37\ shortLabel HG03098.pat\ subGroups view=net sample=s037 population=afr subpop=msl hap=pat\ track netHprcGCA_018506155v1\ type netAlign GCA_018506155.1 chainHprcGCA_018506155v1\ encTfChipPkENCFF946ACA GM12878 GABPA narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in GM12878 from ENCODE 3 (ENCFF946ACA) 0 119 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of GABPA in GM12878 from ENCODE 3 (ENCFF946ACA)\ parent encTfChipPk off\ shortLabel GM12878 GABPA\ subGroups cellType=GM12878 factor=GABPA\ track encTfChipPkENCFF946ACA\ wgEncodeRegDnaseUwHcmHotspot HCM Ht bigBed 6 + HCM cardiac myocyte DNaseI Hotspots from ENCODE 0 119 255 230 85 255 242 170 1 0 0 regulation 1 color 255,230,85\ longLabel HCM cardiac myocyte DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HCM Ht\ subGroups view=b_Hot cellType=HCM treatment=n_a tissue=heart cancer=normal\ track wgEncodeRegDnaseUwHcmHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day02Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_forward 1 119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep3.CNhs13726.13353-143E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13353-143E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day02Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_forward 0 119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep3.CNhs13726.13353-143E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13353-143E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5\ urlLabel FANTOM5 Details:\ chainHprcGCA_018471535v1 HG02148.mat chain GCA_018471535.1 HG02148.mat HG02148.pri.mat.f1_v2 (May 2021 GCA_018471535.1_HG02148.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 119 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02148.mat HG02148.pri.mat.f1_v2 (May 2021 GCA_018471535.1_HG02148.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471535.1\ parent hprcChainNetViewchain off\ priority 62\ shortLabel HG02148.mat\ subGroups view=chain sample=s062 population=amr subpop=pel hap=mat\ track chainHprcGCA_018471535v1\ type chain GCA_018471535.1\ encTfChipPkENCFF298AIX GM12878 GATAD2B narrowPeak Transcription Factor ChIP-seq Peaks of GATAD2B in GM12878 from ENCODE 3 (ENCFF298AIX) 0 120 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of GATAD2B in GM12878 from ENCODE 3 (ENCFF298AIX)\ parent encTfChipPk off\ shortLabel GM12878 GATAD2B\ subGroups cellType=GM12878 factor=GATAD2B\ track encTfChipPkENCFF298AIX\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_tpm_rev Hes3-gfpCardiomyocyticInduction_Day02Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_reverse 1 120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep3.CNhs13726.13353-143E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13353-143E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_ctss_rev Hes3-gfpCardiomyocyticInduction_Day02Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_reverse 0 120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep3.CNhs13726.13353-143E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13353-143E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5\ urlLabel FANTOM5 Details:\ netHprcGCA_018471535v1 HG02148.mat netAlign GCA_018471535.1 chainHprcGCA_018471535v1 HG02148.mat HG02148.pri.mat.f1_v2 (May 2021 GCA_018471535.1_HG02148.pri.mat.f1_v2) HPRC project computed Chain Nets 1 120 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02148.mat HG02148.pri.mat.f1_v2 (May 2021 GCA_018471535.1_HG02148.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471535.1\ parent hprcChainNetViewnet off\ priority 62\ shortLabel HG02148.mat\ subGroups view=net sample=s062 population=amr subpop=pel hap=mat\ track netHprcGCA_018471535v1\ type netAlign GCA_018471535.1 chainHprcGCA_018471535v1\ wgEncodeRegDnaseUwHpafHotspot HPAF Ht bigBed 6 + HPAF pulmonary artery fibroblast DNaseI Hotspots from ENCODE 0 120 255 232 85 255 243 170 1 0 0 regulation 1 color 255,232,85\ longLabel HPAF pulmonary artery fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HPAF Ht\ subGroups view=b_Hot cellType=HPAF treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHpafHotspot\ type bigBed 6 +\ wgEncodeRegDnaseUwAoafHotspot AoAF Ht bigBed 6 + AoAF aorta fibroblast DNaseI Hotspots from ENCODE 0 121 255 236 85 255 245 170 1 0 0 regulation 1 color 255,236,85\ longLabel AoAF aorta fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel AoAF Ht\ subGroups view=b_Hot cellType=AoAF treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwAoafHotspot\ type bigBed 6 +\ encTfChipPkENCFF722QBB GM12878 HCFC1 narrowPeak Transcription Factor ChIP-seq Peaks of HCFC1 in GM12878 from ENCODE 3 (ENCFF722QBB) 0 121 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of HCFC1 in GM12878 from ENCODE 3 (ENCFF722QBB)\ parent encTfChipPk off\ shortLabel GM12878 HCFC1\ subGroups cellType=GM12878 factor=HCFC1\ track encTfChipPkENCFF722QBB\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day03Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_forward 1 121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep1.CNhs13655.13330-143B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13330-143B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day03Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_forward 0 121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep1.CNhs13655.13330-143B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13330-143B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9\ urlLabel FANTOM5 Details:\ chainHprcGCA_018471545v1 HG01952.mat chain GCA_018471545.1 HG01952.mat HG01952.pri.mat.f1_v2 (May 2021 GCA_018471545.1_HG01952.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 121 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01952.mat HG01952.pri.mat.f1_v2 (May 2021 GCA_018471545.1_HG01952.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471545.1\ parent hprcChainNetViewchain off\ priority 63\ shortLabel HG01952.mat\ subGroups view=chain sample=s063 population=amr subpop=pel hap=mat\ track chainHprcGCA_018471545v1\ type chain GCA_018471545.1\ encTfChipPkENCFF299UPZ GM12878 HDAC2 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in GM12878 from ENCODE 3 (ENCFF299UPZ) 0 122 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in GM12878 from ENCODE 3 (ENCFF299UPZ)\ parent encTfChipPk off\ shortLabel GM12878 HDAC2\ subGroups cellType=GM12878 factor=HDAC2\ track encTfChipPkENCFF299UPZ\ wgEncodeRegDnaseUwHcpepicHotspot HCPEpiC Ht bigBed 6 + HCPEpiC choroid plexus epithelium DNaseI Hotspots from ENCODE 0 122 255 242 85 255 248 170 1 0 0 regulation 1 color 255,242,85\ longLabel HCPEpiC choroid plexus epithelium DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HCPEpiC Ht\ subGroups view=b_Hot cellType=HCPEpiC treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwHcpepicHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_tpm_rev Hes3-gfpCardiomyocyticInduction_Day03Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_reverse 1 122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep1.CNhs13655.13330-143B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13330-143B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_ctss_rev Hes3-gfpCardiomyocyticInduction_Day03Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_reverse 0 122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep1.CNhs13655.13330-143B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13330-143B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9\ urlLabel FANTOM5 Details:\ netHprcGCA_018471545v1 HG01952.mat netAlign GCA_018471545.1 chainHprcGCA_018471545v1 HG01952.mat HG01952.pri.mat.f1_v2 (May 2021 GCA_018471545.1_HG01952.pri.mat.f1_v2) HPRC project computed Chain Nets 1 122 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01952.mat HG01952.pri.mat.f1_v2 (May 2021 GCA_018471545.1_HG01952.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471545.1\ parent hprcChainNetViewnet off\ priority 63\ shortLabel HG01952.mat\ subGroups view=net sample=s063 population=amr subpop=pel hap=mat\ track netHprcGCA_018471545v1\ type netAlign GCA_018471545.1 chainHprcGCA_018471545v1\ encTfChipPkENCFF248JAL GM12878 HDAC6 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC6 in GM12878 from ENCODE 3 (ENCFF248JAL) 0 123 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of HDAC6 in GM12878 from ENCODE 3 (ENCFF248JAL)\ parent encTfChipPk off\ shortLabel GM12878 HDAC6\ subGroups cellType=GM12878 factor=HDAC6\ track encTfChipPkENCFF248JAL\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day03Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_forward 1 123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep2.CNhs13715.13342-143D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13342-143D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day03Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_forward 0 123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep2.CNhs13715.13342-143D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13342-143D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472695v1 HG01928.mat chain GCA_018472695.1 HG01928.mat HG01928.pri.mat.f1_v2 (May 2021 GCA_018472695.1_HG01928.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 123 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01928.mat HG01928.pri.mat.f1_v2 (May 2021 GCA_018472695.1_HG01928.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472695.1\ parent hprcChainNetViewchain off\ priority 65\ shortLabel HG01928.mat\ subGroups view=chain sample=s065 population=amr subpop=pel hap=mat\ track chainHprcGCA_018472695v1\ type chain GCA_018472695.1\ wgEncodeRegDnaseUwHpfHotspot HPF Ht bigBed 6 + HPF pulmonary fibroblast DNaseI Hotspots from ENCODE 0 123 255 247 85 255 251 170 1 0 0 regulation 1 color 255,247,85\ longLabel HPF pulmonary fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HPF Ht\ subGroups view=b_Hot cellType=HPF treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwHpfHotspot\ type bigBed 6 +\ encTfChipPkENCFF603BID GM12878 HSF1 narrowPeak Transcription Factor ChIP-seq Peaks of HSF1 in GM12878 from ENCODE 3 (ENCFF603BID) 0 124 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of HSF1 in GM12878 from ENCODE 3 (ENCFF603BID)\ parent encTfChipPk off\ shortLabel GM12878 HSF1\ subGroups cellType=GM12878 factor=HSF1\ track encTfChipPkENCFF603BID\ wgEncodeRegDnaseUwHconfHotspot HConF Ht bigBed 6 + HConF conjunctival fibroblast DNaseI Hotspots from ENCODE 0 124 255 252 85 255 253 170 1 0 0 regulation 1 color 255,252,85\ longLabel HConF conjunctival fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HConF Ht\ subGroups view=b_Hot cellType=HConF treatment=n_a tissue=eye cancer=unknown\ track wgEncodeRegDnaseUwHconfHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_tpm_rev Hes3-gfpCardiomyocyticInduction_Day03Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_reverse 1 124 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep2.CNhs13715.13342-143D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13342-143D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_ctss_rev Hes3-gfpCardiomyocyticInduction_Day03Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_reverse 0 124 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep2.CNhs13715.13342-143D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13342-143D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3\ urlLabel FANTOM5 Details:\ netHprcGCA_018472695v1 HG01928.mat netAlign GCA_018472695.1 chainHprcGCA_018472695v1 HG01928.mat HG01928.pri.mat.f1_v2 (May 2021 GCA_018472695.1_HG01928.pri.mat.f1_v2) HPRC project computed Chain Nets 1 124 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01928.mat HG01928.pri.mat.f1_v2 (May 2021 GCA_018472695.1_HG01928.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472695.1\ parent hprcChainNetViewnet off\ priority 65\ shortLabel HG01928.mat\ subGroups view=net sample=s065 population=amr subpop=pel hap=mat\ track netHprcGCA_018472695v1\ type netAlign GCA_018472695.1 chainHprcGCA_018472695v1\ encTfChipPkENCFF197ABX GM12878 IKZF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF1 in GM12878 from ENCODE 3 (ENCFF197ABX) 0 125 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of IKZF1 in GM12878 from ENCODE 3 (ENCFF197ABX)\ parent encTfChipPk off\ shortLabel GM12878 IKZF1 1\ subGroups cellType=GM12878 factor=IKZF1\ track encTfChipPkENCFF197ABX\ wgEncodeRegDnaseUwHacHotspot HAc Ht bigBed 6 + HAc cerebellar astrocyte DNaseI Hotspots from ENCODE 0 125 250 255 85 252 255 170 1 0 0 regulation 1 color 250,255,85\ longLabel HAc cerebellar astrocyte DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HAc Ht\ subGroups view=b_Hot cellType=HAc treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwHacHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day03Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_forward 1 125 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep3.CNhs13727.13354-143E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13354-143E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day03Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_forward 0 125 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep3.CNhs13727.13354-143E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13354-143E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472865v1 HG01978.mat chain GCA_018472865.1 HG01978.mat HG01978.pri.mat.f1_v2 (May 2021 GCA_018472865.1_HG01978.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 125 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01978.mat HG01978.pri.mat.f1_v2 (May 2021 GCA_018472865.1_HG01978.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472865.1\ parent hprcChainNetViewchain off\ priority 68\ shortLabel HG01978.mat\ subGroups view=chain sample=s068 population=amr subpop=pel hap=mat\ track chainHprcGCA_018472865v1\ type chain GCA_018472865.1\ encTfChipPkENCFF968NOG GM12878 IKZF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF1 in GM12878 from ENCODE 3 (ENCFF968NOG) 0 126 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of IKZF1 in GM12878 from ENCODE 3 (ENCFF968NOG)\ parent encTfChipPk off\ shortLabel GM12878 IKZF1 2\ subGroups cellType=GM12878 factor=IKZF1\ track encTfChipPkENCFF968NOG\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_tpm_rev Hes3-gfpCardiomyocyticInduction_Day03Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_reverse 1 126 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep3.CNhs13727.13354-143E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13354-143E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_ctss_rev Hes3-gfpCardiomyocyticInduction_Day03Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_reverse 0 126 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep3.CNhs13727.13354-143E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13354-143E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6\ urlLabel FANTOM5 Details:\ netHprcGCA_018472865v1 HG01978.mat netAlign GCA_018472865.1 chainHprcGCA_018472865v1 HG01978.mat HG01978.pri.mat.f1_v2 (May 2021 GCA_018472865.1_HG01978.pri.mat.f1_v2) HPRC project computed Chain Nets 1 126 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01978.mat HG01978.pri.mat.f1_v2 (May 2021 GCA_018472865.1_HG01978.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472865.1\ parent hprcChainNetViewnet off\ priority 68\ shortLabel HG01978.mat\ subGroups view=net sample=s068 population=amr subpop=pel hap=mat\ track netHprcGCA_018472865v1\ type netAlign GCA_018472865.1 chainHprcGCA_018472865v1\ wgEncodeRegDnaseUwHvmfHotspot HVMF Ht bigBed 6 + HVMF villous mesenchymal fibroblast DNaseI Hotspots from ENCODE 0 126 242 255 85 248 255 170 1 0 0 regulation 1 color 242,255,85\ longLabel HVMF villous mesenchymal fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HVMF Ht\ subGroups view=b_Hot cellType=HVMF treatment=n_a tissue=placenta cancer=normal\ track wgEncodeRegDnaseUwHvmfHotspot\ type bigBed 6 +\ encTfChipPkENCFF018NNF GM12878 IKZF1 3 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF1 in GM12878 from ENCODE 3 (ENCFF018NNF) 0 127 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of IKZF1 in GM12878 from ENCODE 3 (ENCFF018NNF)\ parent encTfChipPk off\ shortLabel GM12878 IKZF1 3\ subGroups cellType=GM12878 factor=IKZF1\ track encTfChipPkENCFF018NNF\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day04Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_forward 1 127 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep1.CNhs13656.13331-143C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13331-143C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day04Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_forward 0 127 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep1.CNhs13656.13331-143C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13331-143C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1\ urlLabel FANTOM5 Details:\ chainHprcGCA_018471525v1 HG02148.pat chain GCA_018471525.1 HG02148.pat HG02148.alt.pat.f1_v2 (May 2021 GCA_018471525.1_HG02148.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 127 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02148.pat HG02148.alt.pat.f1_v2 (May 2021 GCA_018471525.1_HG02148.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471525.1\ parent hprcChainNetViewchain off\ priority 61\ shortLabel HG02148.pat\ subGroups view=chain sample=s061 population=amr subpop=pel hap=pat\ track chainHprcGCA_018471525v1\ type chain GCA_018471525.1\ wgEncodeRegDnaseUwHipepicHotspot HIPEpiC Ht bigBed 6 + HIPEpiC iris pigment epithelium DNaseI Hotspots from ENCODE 0 127 236 255 85 245 255 170 1 0 0 regulation 1 color 236,255,85\ longLabel HIPEpiC iris pigment epithelium DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HIPEpiC Ht\ subGroups view=b_Hot cellType=HIPEpiC treatment=n_a tissue=eye cancer=normal\ track wgEncodeRegDnaseUwHipepicHotspot\ type bigBed 6 +\ wgEncodeRegDnaseUwBonemarrowmscHotspot bonemarrow_MSC Ht bigBed 6 + bone_marrow_MSC bone marrow fibroblastoid DNaseI Hotspots from ENCODE 0 128 228 255 85 241 255 170 1 0 0 regulation 1 color 228,255,85\ longLabel bone_marrow_MSC bone marrow fibroblastoid DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel bonemarrow_MSC Ht\ subGroups view=b_Hot cellType=bone_marrow_MSC treatment=n_a tissue=bone_marrow cancer=normal\ track wgEncodeRegDnaseUwBonemarrowmscHotspot\ type bigBed 6 +\ encTfChipPkENCFF526WVH GM12878 IKZF2 1 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF2 in GM12878 from ENCODE 3 (ENCFF526WVH) 0 128 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of IKZF2 in GM12878 from ENCODE 3 (ENCFF526WVH)\ parent encTfChipPk off\ shortLabel GM12878 IKZF2 1\ subGroups cellType=GM12878 factor=IKZF2\ track encTfChipPkENCFF526WVH\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_tpm_rev Hes3-gfpCardiomyocyticInduction_Day04Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_reverse 1 128 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep1.CNhs13656.13331-143C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13331-143C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_ctss_rev Hes3-gfpCardiomyocyticInduction_Day04Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_reverse 0 128 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep1.CNhs13656.13331-143C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13331-143C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1\ urlLabel FANTOM5 Details:\ netHprcGCA_018471525v1 HG02148.pat netAlign GCA_018471525.1 chainHprcGCA_018471525v1 HG02148.pat HG02148.alt.pat.f1_v2 (May 2021 GCA_018471525.1_HG02148.alt.pat.f1_v2) HPRC project computed Chain Nets 1 128 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02148.pat HG02148.alt.pat.f1_v2 (May 2021 GCA_018471525.1_HG02148.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471525.1\ parent hprcChainNetViewnet off\ priority 61\ shortLabel HG02148.pat\ subGroups view=net sample=s061 population=amr subpop=pel hap=pat\ track netHprcGCA_018471525v1\ type netAlign GCA_018471525.1 chainHprcGCA_018471525v1\ wgEncodeRegDnaseUwAg10803Hotspot AG10803 Ht bigBed 6 + AG10803 skin fibroblast DNaseI Hotspots from ENCODE 0 129 220 255 85 237 255 170 1 0 0 regulation 1 color 220,255,85\ longLabel AG10803 skin fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel AG10803 Ht\ subGroups view=b_Hot cellType=AG10803 treatment=n_a tissue=skin cancer=unknown\ track wgEncodeRegDnaseUwAg10803Hotspot\ type bigBed 6 +\ encTfChipPkENCFF088OLI GM12878 IKZF2 2 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF2 in GM12878 from ENCODE 3 (ENCFF088OLI) 0 129 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of IKZF2 in GM12878 from ENCODE 3 (ENCFF088OLI)\ parent encTfChipPk off\ shortLabel GM12878 IKZF2 2\ subGroups cellType=GM12878 factor=IKZF2\ track encTfChipPkENCFF088OLI\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day04Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_forward 1 129 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep2.CNhs13716.13343-143D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13343-143D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day04Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_forward 0 129 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep2.CNhs13716.13343-143D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13343-143D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4\ urlLabel FANTOM5 Details:\ chainHprcGCA_018471555v1 HG01952.pat chain GCA_018471555.1 HG01952.pat HG01952.alt.pat.f1_v2 (May 2021 GCA_018471555.1_HG01952.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 129 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01952.pat HG01952.alt.pat.f1_v2 (May 2021 GCA_018471555.1_HG01952.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471555.1\ parent hprcChainNetViewchain off\ priority 64\ shortLabel HG01952.pat\ subGroups view=chain sample=s064 population=amr subpop=pel hap=pat\ track chainHprcGCA_018471555v1\ type chain GCA_018471555.1\ encTfChipPkENCFF604AZX GM12878 IRF3 1 narrowPeak Transcription Factor ChIP-seq Peaks of IRF3 in GM12878 from ENCODE 3 (ENCFF604AZX) 0 130 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of IRF3 in GM12878 from ENCODE 3 (ENCFF604AZX)\ parent encTfChipPk off\ shortLabel GM12878 IRF3 1\ subGroups cellType=GM12878 factor=IRF3\ track encTfChipPkENCFF604AZX\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_tpm_rev Hes3-gfpCardiomyocyticInduction_Day04Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_reverse 1 130 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep2.CNhs13716.13343-143D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13343-143D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_ctss_rev Hes3-gfpCardiomyocyticInduction_Day04Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_reverse 0 130 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep2.CNhs13716.13343-143D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13343-143D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4\ urlLabel FANTOM5 Details:\ netHprcGCA_018471555v1 HG01952.pat netAlign GCA_018471555.1 chainHprcGCA_018471555v1 HG01952.pat HG01952.alt.pat.f1_v2 (May 2021 GCA_018471555.1_HG01952.alt.pat.f1_v2) HPRC project computed Chain Nets 1 130 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01952.pat HG01952.alt.pat.f1_v2 (May 2021 GCA_018471555.1_HG01952.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471555.1\ parent hprcChainNetViewnet off\ priority 64\ shortLabel HG01952.pat\ subGroups view=net sample=s064 population=amr subpop=pel hap=pat\ track netHprcGCA_018471555v1\ type netAlign GCA_018471555.1 chainHprcGCA_018471555v1\ wgEncodeRegDnaseUwHmfHotspot HMF Ht bigBed 6 + HMF mammary fibroblast DNaseI Hotspots from ENCODE 0 130 212 255 85 233 255 170 1 0 0 regulation 1 color 212,255,85\ longLabel HMF mammary fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HMF Ht\ subGroups view=b_Hot cellType=HMF treatment=n_a tissue=breast cancer=unknown\ track wgEncodeRegDnaseUwHmfHotspot\ type bigBed 6 +\ encTfChipPkENCFF719MXF GM12878 IRF3 2 narrowPeak Transcription Factor ChIP-seq Peaks of IRF3 in GM12878 from ENCODE 3 (ENCFF719MXF) 0 131 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of IRF3 in GM12878 from ENCODE 3 (ENCFF719MXF)\ parent encTfChipPk off\ shortLabel GM12878 IRF3 2\ subGroups cellType=GM12878 factor=IRF3\ track encTfChipPkENCFF719MXF\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day04Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_forward 1 131 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep3.CNhs13728.13355-143E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13355-143E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day04Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_forward 0 131 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep3.CNhs13728.13355-143E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13355-143E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472705v1 HG01928.pat chain GCA_018472705.1 HG01928.pat HG01928.alt.pat.f1_v2 (May 2021 GCA_018472705.1_HG01928.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 131 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01928.pat HG01928.alt.pat.f1_v2 (May 2021 GCA_018472705.1_HG01928.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472705.1\ parent hprcChainNetViewchain off\ priority 66\ shortLabel HG01928.pat\ subGroups view=chain sample=s066 population=amr subpop=pel hap=pat\ track chainHprcGCA_018472705v1\ type chain GCA_018472705.1\ wgEncodeRegDnaseUwHgfHotspot HGF Ht bigBed 6 + HGF gingival fibroblast DNaseI Hotspots from ENCODE 0 131 204 255 85 229 255 170 1 0 0 regulation 1 color 204,255,85\ longLabel HGF gingival fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HGF Ht\ subGroups view=b_Hot cellType=HGF treatment=n_a tissue=periodontium cancer=normal\ track wgEncodeRegDnaseUwHgfHotspot\ type bigBed 6 +\ encTfChipPkENCFF720YMW GM12878 IRF4 narrowPeak Transcription Factor ChIP-seq Peaks of IRF4 in GM12878 from ENCODE 3 (ENCFF720YMW) 0 132 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of IRF4 in GM12878 from ENCODE 3 (ENCFF720YMW)\ parent encTfChipPk off\ shortLabel GM12878 IRF4\ subGroups cellType=GM12878 factor=IRF4\ track encTfChipPkENCFF720YMW\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_tpm_rev Hes3-gfpCardiomyocyticInduction_Day04Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_reverse 1 132 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep3.CNhs13728.13355-143E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13355-143E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_ctss_rev Hes3-gfpCardiomyocyticInduction_Day04Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_reverse 0 132 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep3.CNhs13728.13355-143E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13355-143E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7\ urlLabel FANTOM5 Details:\ netHprcGCA_018472705v1 HG01928.pat netAlign GCA_018472705.1 chainHprcGCA_018472705v1 HG01928.pat HG01928.alt.pat.f1_v2 (May 2021 GCA_018472705.1_HG01928.alt.pat.f1_v2) HPRC project computed Chain Nets 1 132 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01928.pat HG01928.alt.pat.f1_v2 (May 2021 GCA_018472705.1_HG01928.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472705.1\ parent hprcChainNetViewnet off\ priority 66\ shortLabel HG01928.pat\ subGroups view=net sample=s066 population=amr subpop=pel hap=pat\ track netHprcGCA_018472705v1\ type netAlign GCA_018472705.1 chainHprcGCA_018472705v1\ wgEncodeRegDnaseUwNhdfneoHotspot NHDF-neo Ht bigBed 6 + NHDF-neo dermal fibroblast, neonate DNaseI Hotspots from ENCODE 0 132 198 255 85 226 255 170 1 0 0 regulation 1 color 198,255,85\ longLabel NHDF-neo dermal fibroblast, neonate DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel NHDF-neo Ht\ subGroups view=b_Hot cellType=NHDF-neo treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwNhdfneoHotspot\ type bigBed 6 +\ encTfChipPkENCFF843HDK GM12878 IRF5 narrowPeak Transcription Factor ChIP-seq Peaks of IRF5 in GM12878 from ENCODE 3 (ENCFF843HDK) 0 133 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of IRF5 in GM12878 from ENCODE 3 (ENCFF843HDK)\ parent encTfChipPk off\ shortLabel GM12878 IRF5\ subGroups cellType=GM12878 factor=IRF5\ track encTfChipPkENCFF843HDK\ wgEncodeRegDnaseUwHaepicHotspot HAEpiC Ht bigBed 6 + HAEpiC amniotic epithelium (AEC) DNaseI Hotspots from ENCODE 0 133 189 255 85 222 255 170 1 0 0 regulation 1 color 189,255,85\ longLabel HAEpiC amniotic epithelium (AEC) DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HAEpiC Ht\ subGroups view=b_Hot cellType=HAEpiC treatment=n_a tissue=embryo cancer=normal\ track wgEncodeRegDnaseUwHaepicHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day05Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_forward 1 133 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep1.CNhs13657.13332-143C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13332-143C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day05Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_forward 0 133 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep1.CNhs13657.13332-143C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13332-143C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472845v1 HG01978.pat chain GCA_018472845.1 HG01978.pat HG01978.alt.pat.f1_v2 (May 2021 GCA_018472845.1_HG01978.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 133 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01978.pat HG01978.alt.pat.f1_v2 (May 2021 GCA_018472845.1_HG01978.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472845.1\ parent hprcChainNetViewchain off\ priority 67\ shortLabel HG01978.pat\ subGroups view=chain sample=s067 population=amr subpop=pel hap=pat\ track chainHprcGCA_018472845v1\ type chain GCA_018472845.1\ encTfChipPkENCFF478XNA GM12878 JUNB narrowPeak Transcription Factor ChIP-seq Peaks of JUNB in GM12878 from ENCODE 3 (ENCFF478XNA) 0 134 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of JUNB in GM12878 from ENCODE 3 (ENCFF478XNA)\ parent encTfChipPk off\ shortLabel GM12878 JUNB\ subGroups cellType=GM12878 factor=JUNB\ track encTfChipPkENCFF478XNA\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_tpm_rev Hes3-gfpCardiomyocyticInduction_Day05Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_reverse 1 134 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep1.CNhs13657.13332-143C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13332-143C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_ctss_rev Hes3-gfpCardiomyocyticInduction_Day05Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_reverse 0 134 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep1.CNhs13657.13332-143C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13332-143C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2\ urlLabel FANTOM5 Details:\ netHprcGCA_018472845v1 HG01978.pat netAlign GCA_018472845.1 chainHprcGCA_018472845v1 HG01978.pat HG01978.alt.pat.f1_v2 (May 2021 GCA_018472845.1_HG01978.alt.pat.f1_v2) HPRC project computed Chain Nets 1 134 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01978.pat HG01978.alt.pat.f1_v2 (May 2021 GCA_018472845.1_HG01978.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472845.1\ parent hprcChainNetViewnet off\ priority 67\ shortLabel HG01978.pat\ subGroups view=net sample=s067 population=amr subpop=pel hap=pat\ track netHprcGCA_018472845v1\ type netAlign GCA_018472845.1 chainHprcGCA_018472845v1\ wgEncodeRegDnaseUwSkmcHotspot SKMC Ht bigBed 6 + SKMC skeletal muscle cell DNaseI Hotspots from ENCODE 0 134 182 255 85 218 255 170 1 0 0 regulation 1 color 182,255,85\ longLabel SKMC skeletal muscle cell DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel SKMC Ht\ subGroups view=b_Hot cellType=SKMC treatment=n_a tissue=muscle cancer=normal\ track wgEncodeRegDnaseUwSkmcHotspot\ type bigBed 6 +\ encTfChipPkENCFF873DJD GM12878 JUND narrowPeak Transcription Factor ChIP-seq Peaks of JUND in GM12878 from ENCODE 3 (ENCFF873DJD) 0 135 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of JUND in GM12878 from ENCODE 3 (ENCFF873DJD)\ parent encTfChipPk off\ shortLabel GM12878 JUND\ subGroups cellType=GM12878 factor=JUND\ track encTfChipPkENCFF873DJD\ wgEncodeRegDnaseUwHbvsmcHotspot HBVSMC Ht bigBed 6 + HBVSMC brain vascular smooth muscle DNaseI Hotspots from ENCODE 0 135 176 255 85 215 255 170 1 0 0 regulation 1 color 176,255,85\ longLabel HBVSMC brain vascular smooth muscle DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HBVSMC Ht\ subGroups view=b_Hot cellType=HBVSMC treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHbvsmcHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day05Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_forward 1 135 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep2.CNhs13717.13344-143D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13344-143D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day05Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_forward 0 135 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep2.CNhs13717.13344-143D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13344-143D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5\ urlLabel FANTOM5 Details:\ chainHprcGCA_018505845v1 HG03492.mat chain GCA_018505845.1 HG03492.mat HG03492.pri.mat.f1_v2 (May 2021 GCA_018505845.1_HG03492.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 135 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03492.mat HG03492.pri.mat.f1_v2 (May 2021 GCA_018505845.1_HG03492.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018505845.1\ parent hprcChainNetViewchain off\ priority 89\ shortLabel HG03492.mat\ subGroups view=chain sample=s089 population=sas subpop=pjl hap=mat\ track chainHprcGCA_018505845v1\ type chain GCA_018505845.1\ wgEncodeRegDnaseUwAg04449Hotspot AG04449 Ht bigBed 6 + AG04449 fetal skin fibroblast DNaseI Hotspots from ENCODE 0 136 152 255 85 203 255 170 1 0 0 regulation 1 color 152,255,85\ longLabel AG04449 fetal skin fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel AG04449 Ht\ subGroups view=b_Hot cellType=AG04449 treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwAg04449Hotspot\ type bigBed 6 +\ encTfChipPkENCFF710ROZ GM12878 KAT2A narrowPeak Transcription Factor ChIP-seq Peaks of KAT2A in GM12878 from ENCODE 3 (ENCFF710ROZ) 0 136 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of KAT2A in GM12878 from ENCODE 3 (ENCFF710ROZ)\ parent encTfChipPk off\ shortLabel GM12878 KAT2A\ subGroups cellType=GM12878 factor=KAT2A\ track encTfChipPkENCFF710ROZ\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_tpm_rev Hes3-gfpCardiomyocyticInduction_Day05Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_reverse 1 136 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep2.CNhs13717.13344-143D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13344-143D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_ctss_rev Hes3-gfpCardiomyocyticInduction_Day05Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_reverse 0 136 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep2.CNhs13717.13344-143D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13344-143D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5\ urlLabel FANTOM5 Details:\ netHprcGCA_018505845v1 HG03492.mat netAlign GCA_018505845.1 chainHprcGCA_018505845v1 HG03492.mat HG03492.pri.mat.f1_v2 (May 2021 GCA_018505845.1_HG03492.pri.mat.f1_v2) HPRC project computed Chain Nets 1 136 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03492.mat HG03492.pri.mat.f1_v2 (May 2021 GCA_018505845.1_HG03492.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018505845.1\ parent hprcChainNetViewnet off\ priority 89\ shortLabel HG03492.mat\ subGroups view=net sample=s089 population=sas subpop=pjl hap=mat\ track netHprcGCA_018505845v1\ type netAlign GCA_018505845.1 chainHprcGCA_018505845v1\ wgEncodeRegDnaseUwAg04450Hotspot AG04450 Ht bigBed 6 + AG04450 fetal lung fibroblast DNaseI Hotspots from ENCODE 0 137 144 255 85 199 255 170 1 0 0 regulation 1 color 144,255,85\ longLabel AG04450 fetal lung fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel AG04450 Ht\ subGroups view=b_Hot cellType=AG04450 treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwAg04450Hotspot\ type bigBed 6 +\ encTfChipPkENCFF799KZP GM12878 KDM1A narrowPeak Transcription Factor ChIP-seq Peaks of KDM1A in GM12878 from ENCODE 3 (ENCFF799KZP) 0 137 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of KDM1A in GM12878 from ENCODE 3 (ENCFF799KZP)\ parent encTfChipPk off\ shortLabel GM12878 KDM1A\ subGroups cellType=GM12878 factor=KDM1A\ track encTfChipPkENCFF799KZP\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day05Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_forward 1 137 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep3.CNhs13729.13356-143E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13356-143E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day05Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_forward 0 137 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep3.CNhs13729.13356-143E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13356-143E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8\ urlLabel FANTOM5 Details:\ chainHprcGCA_018505835v1 HG03492.pat chain GCA_018505835.1 HG03492.pat HG03492.alt.pat.f1_v2 (May 2021 GCA_018505835.1_HG03492.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 137 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03492.pat HG03492.alt.pat.f1_v2 (May 2021 GCA_018505835.1_HG03492.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018505835.1\ parent hprcChainNetViewchain off\ priority 88\ shortLabel HG03492.pat\ subGroups view=chain sample=s088 population=sas subpop=pjl hap=pat\ track chainHprcGCA_018505835v1\ type chain GCA_018505835.1\ encTfChipPkENCFF417WPC GM12878 KLF5 narrowPeak Transcription Factor ChIP-seq Peaks of KLF5 in GM12878 from ENCODE 3 (ENCFF417WPC) 0 138 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of KLF5 in GM12878 from ENCODE 3 (ENCFF417WPC)\ parent encTfChipPk off\ shortLabel GM12878 KLF5\ subGroups cellType=GM12878 factor=KLF5\ track encTfChipPkENCFF417WPC\ wgEncodeRegDnaseUwHahHotspot HA-h Ht bigBed 6 + HA-h hippocampal astrocyte DNaseI Hotspots from ENCODE 0 138 122 255 85 188 255 170 1 0 0 regulation 1 color 122,255,85\ longLabel HA-h hippocampal astrocyte DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HA-h Ht\ subGroups view=b_Hot cellType=HA-h treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwHahHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_tpm_rev Hes3-gfpCardiomyocyticInduction_Day05Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_reverse 1 138 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep3.CNhs13729.13356-143E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13356-143E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_ctss_rev Hes3-gfpCardiomyocyticInduction_Day05Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_reverse 0 138 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep3.CNhs13729.13356-143E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13356-143E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8\ urlLabel FANTOM5 Details:\ netHprcGCA_018505835v1 HG03492.pat netAlign GCA_018505835.1 chainHprcGCA_018505835v1 HG03492.pat HG03492.alt.pat.f1_v2 (May 2021 GCA_018505835.1_HG03492.alt.pat.f1_v2) HPRC project computed Chain Nets 1 138 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03492.pat HG03492.alt.pat.f1_v2 (May 2021 GCA_018505835.1_HG03492.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018505835.1\ parent hprcChainNetViewnet off\ priority 88\ shortLabel HG03492.pat\ subGroups view=net sample=s088 population=sas subpop=pjl hap=pat\ track netHprcGCA_018505835v1\ type netAlign GCA_018505835.1 chainHprcGCA_018505835v1\ encTfChipPkENCFF186AWV GM12878 MAFK narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in GM12878 from ENCODE 3 (ENCFF186AWV) 0 139 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of MAFK in GM12878 from ENCODE 3 (ENCFF186AWV)\ parent encTfChipPk off\ shortLabel GM12878 MAFK\ subGroups cellType=GM12878 factor=MAFK\ track encTfChipPkENCFF186AWV\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day06Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_forward 1 139 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep1.CNhs13658.13333-143C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13333-143C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day06Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_forward 0 139 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep1.CNhs13658.13333-143C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13333-143C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3\ urlLabel FANTOM5 Details:\ chainHprcGCA_018471085v1 HG01175.mat chain GCA_018471085.1 HG01175.mat HG01175.pri.mat.f1_v2 (May 2021 GCA_018471085.1_HG01175.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 139 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01175.mat HG01175.pri.mat.f1_v2 (May 2021 GCA_018471085.1_HG01175.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471085.1\ parent hprcChainNetViewchain off\ priority 47\ shortLabel HG01175.mat\ subGroups view=chain sample=s047 population=amr subpop=pur hap=mat\ track chainHprcGCA_018471085v1\ type chain GCA_018471085.1\ wgEncodeRegDnaseUwM059jHotspot M059J Ht bigBed 6 + M059J glioblastoma cell line DNaseI Hotspots from ENCODE 0 139 96 255 85 175 255 170 1 0 0 regulation 1 color 96,255,85\ longLabel M059J glioblastoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel M059J Ht\ subGroups view=b_Hot cellType=M059J treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwM059jHotspot\ type bigBed 6 +\ encTfChipPkENCFF270NAL GM12878 MAX narrowPeak Transcription Factor ChIP-seq Peaks of MAX in GM12878 from ENCODE 3 (ENCFF270NAL) 0 140 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of MAX in GM12878 from ENCODE 3 (ENCFF270NAL)\ parent encTfChipPk off\ shortLabel GM12878 MAX\ subGroups cellType=GM12878 factor=MAX\ track encTfChipPkENCFF270NAL\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_tpm_rev Hes3-gfpCardiomyocyticInduction_Day06Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_reverse 1 140 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep1.CNhs13658.13333-143C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13333-143C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_ctss_rev Hes3-gfpCardiomyocyticInduction_Day06Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_reverse 0 140 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep1.CNhs13658.13333-143C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13333-143C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3\ urlLabel FANTOM5 Details:\ netHprcGCA_018471085v1 HG01175.mat netAlign GCA_018471085.1 chainHprcGCA_018471085v1 HG01175.mat HG01175.pri.mat.f1_v2 (May 2021 GCA_018471085.1_HG01175.pri.mat.f1_v2) HPRC project computed Chain Nets 1 140 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01175.mat HG01175.pri.mat.f1_v2 (May 2021 GCA_018471085.1_HG01175.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471085.1\ parent hprcChainNetViewnet off\ priority 47\ shortLabel HG01175.mat\ subGroups view=net sample=s047 population=amr subpop=pur hap=mat\ track netHprcGCA_018471085v1\ type netAlign GCA_018471085.1 chainHprcGCA_018471085v1\ wgEncodeRegDnaseUwRpmi7951Hotspot RPMI-7951 Ht bigBed 6 + RPMI-7951 melanoma cell line DNaseI Hotspots from ENCODE 0 140 85 255 90 170 255 172 1 0 0 regulation 1 color 85,255,90\ longLabel RPMI-7951 melanoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel RPMI-7951 Ht\ subGroups view=b_Hot cellType=RPMI-7951 treatment=n_a tissue=skin cancer=cancer\ track wgEncodeRegDnaseUwRpmi7951Hotspot\ type bigBed 6 +\ encTfChipPkENCFF958GXF GM12878 MEF2A narrowPeak Transcription Factor ChIP-seq Peaks of MEF2A in GM12878 from ENCODE 3 (ENCFF958GXF) 0 141 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of MEF2A in GM12878 from ENCODE 3 (ENCFF958GXF)\ parent encTfChipPk off\ shortLabel GM12878 MEF2A\ subGroups cellType=GM12878 factor=MEF2A\ track encTfChipPkENCFF958GXF\ wgEncodeRegDnaseUwHaspHotspot HA-sp Ht bigBed 6 + HA-sp spinal cord astrocyte DNaseI Hotspots from ENCODE 0 141 85 255 124 170 255 189 1 0 0 regulation 1 color 85,255,124\ longLabel HA-sp spinal cord astrocyte DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HA-sp Ht\ subGroups view=b_Hot cellType=HA-sp treatment=n_a tissue=spinal_cord cancer=normal\ track wgEncodeRegDnaseUwHaspHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day06Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_forward 1 141 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep2.CNhs13718.13345-143D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13345-143D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day06Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_forward 0 141 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep2.CNhs13718.13345-143D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13345-143D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6\ urlLabel FANTOM5 Details:\ chainHprcGCA_018471095v1 HG00741.mat chain GCA_018471095.1 HG00741.mat HG00741.pri.mat.f1_v2 (May 2021 GCA_018471095.1_HG00741.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 141 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00741.mat HG00741.pri.mat.f1_v2 (May 2021 GCA_018471095.1_HG00741.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471095.1\ parent hprcChainNetViewchain off\ priority 48\ shortLabel HG00741.mat\ subGroups view=chain sample=s048 population=amr subpop=pur hap=mat\ track chainHprcGCA_018471095v1\ type chain GCA_018471095.1\ encTfChipPkENCFF623FAW GM12878 MEF2B narrowPeak Transcription Factor ChIP-seq Peaks of MEF2B in GM12878 from ENCODE 3 (ENCFF623FAW) 0 142 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of MEF2B in GM12878 from ENCODE 3 (ENCFF623FAW)\ parent encTfChipPk off\ shortLabel GM12878 MEF2B\ subGroups cellType=GM12878 factor=MEF2B\ track encTfChipPkENCFF623FAW\ wgEncodeRegDnaseUwHcfaaHotspot HCFaa Ht bigBed 6 + HCFaa cardiac fibroblast DNaseI Hotspots from ENCODE 0 142 85 255 150 170 255 202 1 0 0 regulation 1 color 85,255,150\ longLabel HCFaa cardiac fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HCFaa Ht\ subGroups view=b_Hot cellType=HCFaa treatment=n_a tissue=heart cancer=normal\ track wgEncodeRegDnaseUwHcfaaHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_tpm_rev Hes3-gfpCardiomyocyticInduction_Day06Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_reverse 1 142 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep2.CNhs13718.13345-143D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13345-143D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_ctss_rev Hes3-gfpCardiomyocyticInduction_Day06Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_reverse 0 142 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep2.CNhs13718.13345-143D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13345-143D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6\ urlLabel FANTOM5 Details:\ netHprcGCA_018471095v1 HG00741.mat netAlign GCA_018471095.1 chainHprcGCA_018471095v1 HG00741.mat HG00741.pri.mat.f1_v2 (May 2021 GCA_018471095.1_HG00741.pri.mat.f1_v2) HPRC project computed Chain Nets 1 142 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00741.mat HG00741.pri.mat.f1_v2 (May 2021 GCA_018471095.1_HG00741.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471095.1\ parent hprcChainNetViewnet off\ priority 48\ shortLabel HG00741.mat\ subGroups view=net sample=s048 population=amr subpop=pur hap=mat\ track netHprcGCA_018471095v1\ type netAlign GCA_018471095.1 chainHprcGCA_018471095v1\ encTfChipPkENCFF830BRO GM12878 MEF2C narrowPeak Transcription Factor ChIP-seq Peaks of MEF2C in GM12878 from ENCODE 3 (ENCFF830BRO) 0 143 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of MEF2C in GM12878 from ENCODE 3 (ENCFF830BRO)\ parent encTfChipPk off\ shortLabel GM12878 MEF2C\ subGroups cellType=GM12878 factor=MEF2C\ track encTfChipPkENCFF830BRO\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day06Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_forward 1 143 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep3.CNhs13730.13357-143E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13357-143E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day06Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_forward 0 143 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep3.CNhs13730.13357-143E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13357-143E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9\ urlLabel FANTOM5 Details:\ chainHprcGCA_018471345v1 HG01106.mat chain GCA_018471345.1 HG01106.mat HG01106.pri.mat.f1_v2 (May 2021 GCA_018471345.1_HG01106.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 143 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01106.mat HG01106.pri.mat.f1_v2 (May 2021 GCA_018471345.1_HG01106.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471345.1\ parent hprcChainNetViewchain off\ priority 50\ shortLabel HG01106.mat\ subGroups view=chain sample=s050 population=amr subpop=pur hap=mat\ track chainHprcGCA_018471345v1\ type chain GCA_018471345.1\ wgEncodeRegDnaseUwWi384ohtam20nm72hrHotspot WI-38 40HTAM Ht bigBed 6 + WI-38 embryonic lung fibroblast cell line (40HTAM) DNaseI Hotspots from ENCODE 0 143 85 255 171 170 255 213 1 0 0 regulation 1 color 85,255,171\ longLabel WI-38 embryonic lung fibroblast cell line (40HTAM) DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel WI-38 40HTAM Ht\ subGroups view=b_Hot cellType=WI-38 treatment=OHTAM_20nM_72hr tissue=lung cancer=normal\ track wgEncodeRegDnaseUwWi384ohtam20nm72hrHotspot\ type bigBed 6 +\ encTfChipPkENCFF125MEN GM12878 MLLT1 narrowPeak Transcription Factor ChIP-seq Peaks of MLLT1 in GM12878 from ENCODE 3 (ENCFF125MEN) 0 144 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of MLLT1 in GM12878 from ENCODE 3 (ENCFF125MEN)\ parent encTfChipPk off\ shortLabel GM12878 MLLT1\ subGroups cellType=GM12878 factor=MLLT1\ track encTfChipPkENCFF125MEN\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_tpm_rev Hes3-gfpCardiomyocyticInduction_Day06Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_reverse 1 144 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep3.CNhs13730.13357-143E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13357-143E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_ctss_rev Hes3-gfpCardiomyocyticInduction_Day06Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_reverse 0 144 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep3.CNhs13730.13357-143E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13357-143E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9\ urlLabel FANTOM5 Details:\ netHprcGCA_018471345v1 HG01106.mat netAlign GCA_018471345.1 chainHprcGCA_018471345v1 HG01106.mat HG01106.pri.mat.f1_v2 (May 2021 GCA_018471345.1_HG01106.pri.mat.f1_v2) HPRC project computed Chain Nets 1 144 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01106.mat HG01106.pri.mat.f1_v2 (May 2021 GCA_018471345.1_HG01106.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471345.1\ parent hprcChainNetViewnet off\ priority 50\ shortLabel HG01106.mat\ subGroups view=net sample=s050 population=amr subpop=pur hap=mat\ track netHprcGCA_018471345v1\ type netAlign GCA_018471345.1 chainHprcGCA_018471345v1\ wgEncodeRegDnaseUwNhdfadHotspot NHDF-Ad Ht bigBed 6 + NHDF-Ad dermal fibroblast DNaseI Hotspots from ENCODE 0 144 85 255 180 170 255 217 1 0 0 regulation 1 color 85,255,180\ longLabel NHDF-Ad dermal fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel NHDF-Ad Ht\ subGroups view=b_Hot cellType=NHDF-Ad treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwNhdfadHotspot\ type bigBed 6 +\ cactus241wayBM Cactus Align bigMaf Cactus Alignments of Zoonomia 241 Placental Mammals 3 145 0 10 100 0 90 10 0 0 0 compGeno 1 altColor 0,90,10\ bigDataUrl https://hgdownload.soe.ucsc.edu/goldenPath/hg38/cactus241way/cactus241way.bigMaf\ color 0, 10, 100\ configurable on\ frames https://hgdownload.soe.ucsc.edu/goldenPath/hg38/cactus241way/cactus241wayFrames.bb\ group compGeno\ itemFirstCharCase noChange\ longLabel Cactus Alignments of Zoonomia 241 Placental Mammals\ parent cons241wayViewalign on\ priority 145\ sGroup_Carnivore Neomonachus_schauinslandi Leptonychotes_weddellii Mirounga_angustirostris odoRosDiv1 Zalophus_californianus Ursus_maritimus Ailuropoda_melanoleuca Panthera_tigris Panthera_onca Panthera_pardus Acinonyx_jubatus Puma_concolor Felis_nigripes Cryptoprocta_ferox Felis_catus Ailurus_fulgens Lycaon_pictus Canis_lupus_familiaris Canis_lupus Vulpes_lagopus Hyaena_hyaena Paradoxurus_hermaphroditus Mellivora_capensis Enhydra_lutris Pteronura_brasiliensis Helogale_parvula Mungos_mungo Spilogale_gracilis Suricata_suricatta Mustela_putorius\ sGroup_Cetartiodactyla Eubalaena_japonica Eschrichtius_robustus Balaenoptera_bonaerensis Balaenoptera_acutorostrata Ziphius_cavirostris Monodon_monoceros Delphinapterus_leucas Mesoplodon_bidens orcOrc1 Lipotes_vexillifer Tursiops_truncatus Neophocaena_asiaeorientalis Phocoena_phocoena Platanista_gangetica Inia_geoffrensis Kogia_breviceps Hippopotamus_amphibius Camelus_dromedarius Camelus_ferus Camelus_bactrianus Vicugna_pacos Sus_scrofa Giraffa_tippelskirchi Okapia_johnstoni Elaphurus_davidianus Catagonus_wagneri Bubalus_bubalis Rangifer_tarandus Odocoileus_virginianus Bison_bison bosMut1 Bos_indicus Bos_taurus Moschus_moschiferus Pantholops_hodgsonii Beatragus_hunteri Ovis_canadensis Ovis_aries Antilocapra_americana Hemitragus_hylocrius Ammotragus_lervia Capra_hircus Capra_aegagrus Saiga_tatarica Tragulus_javanicus\ sGroup_Chiroptera Hipposideros_armiger Rhinolophus_sinicus pteAle1 Pteropus_vampyrus Tadarida_brasiliensis Hipposideros_galeritus eidHel1 Miniopterus_schreibersii Miniopterus_natalensis Macroglossus_sobrinus Rousettus_aegyptiacus Eptesicus_fuscus myoBra1 myoLuc2 Myotis_myotis myoDav1 Mormoops_blainvillei Megaderma_lyra ptePar1 Desmodus_rotundus Craseonycteris_thonglongyai Anoura_caudifer Murina_feae Tonatia_saurophila Carollia_perspicillata Pipistrellus_pipistrellus Micronycteris_hirsuta Noctilio_leporinus Lasiurus_borealis Artibeus_jamaicensis\ sGroup_Mammals Galeopterus_variegatus Ceratotherium_simum_cottoni Ceratotherium_simum Diceros_bicornis Dicerorhinus_sumatrensis Tapirus_indicus Tapirus_terrestris Equus_asinus Equus_przewalskii Equus_caballus Tupaia_tana tupChi1 Trichechus_manatus Loxodonta_africana Manis_pentadactyla Manis_javanica Choloepus_didactylus Choloepus_hoffmanni Tolypeutes_matacus Chaetophractus_vellerosus Oryctolagus_cuniculus Lepus_americanus Orycteropus_afer Dasypus_novemcinctus Myrmecophaga_tridactyla Tamandua_tetradactyla Solenodon_paradoxus Scalopus_aquaticus Procavia_capensis Heterohyrax_brucei Chrysochloris_asiatica Uropsilus_gracilis Condylura_cristata Ochotona_princeps Echinops_telfairi eleEdw1 Erinaceus_europaeus sorAra2 Microgale_talazaci Crocidura_indochinensis\ sGroup_Primate Pan_troglodytes Pan_paniscus Gorilla_gorilla Pongo_abelii nomLeu3 Macaca_fascicularis Macaca_mulatta Papio_anubis Macaca_nemestrina Mandrillus_leucophaeus Nasalis_larvatus Erythrocebus_patas Cercopithecus_neglectus Chlorocebus_sabaeus Semnopithecus_entellus Rhinopithecus_roxellana Rhinopithecus_bieti Pygathrix_nemaeus colAng1 Piliocolobus_tephrosceles Cercocebus_atys Pithecia_pithecia Ateles_geoffroyi Aotus_nancymaae Callicebus_donacophilus Alouatta_palliata Cebus_albifrons cebCap1 Saguinus_imperator saiBol1 Callithrix_jacchus Daubentonia_madagascariensis Lemur_catta Eulemur_fulvus Eulemur_flavifrons Propithecus_coquereli Indri_indri Cheirogaleus_medius Mirza_coquereli Microcebus_murinus Nycticebus_coucang otoGar3\ sGroup_Rodents Glis_glis Graphiurus_murinus Xerus_inauris Spermophilus_dauricus Castor_canadensis speTri2 Aplodontia_rufa Marmota_marmota Hystrix_cristata Heterocephalus_glaber Muscardinus_avellanarius Cuniculus_paca chiLan1 Dasyprocta_punctata fukDam1 Ctenodactylus_gundi Dinomys_branickii Dolichotis_patagonum Hydrochoerus_hydrochaeris Cavia_tschudii Cavia_porcellus cavApe1 dipOrd2 Dipodomys_stephensi Nannospalax_galili Thryonomys_swinderianus Octodon_degus Allactaga_bullata Petromus_typicus Perognathus_longimembris Zapus_hudsonius Jaculus_jaculus Ctenomys_sociabilis Capromys_pilorides Myocastor_coypus Cricetomys_gambianus Peromyscus_maniculatus Onychomys_torridus Cricetulus_griseus Ellobius_talpinus Mesocricetus_auratus Ellobius_lutescens Psammomys_obesus Meriones_unguiculatus micOch1 Ondatra_zibethicus Acomys_cahirinus Sigmodon_hispidus Mus_musculus Mus_caroli Mus_spretus Mus_pahari Rattus_norvegicus\ shortLabel Cactus Align\ speciesCodonDefault hg38\ speciesDefaultOff Pan_paniscus Gorilla_gorilla Pongo_abelii nomLeu3 Macaca_fascicularis Macaca_mulatta Papio_anubis Macaca_nemestrina Mandrillus_leucophaeus Nasalis_larvatus Erythrocebus_patas Cercopithecus_neglectus Chlorocebus_sabaeus Semnopithecus_entellus Rhinopithecus_roxellana Rhinopithecus_bieti Pygathrix_nemaeus colAng1 Piliocolobus_tephrosceles Cercocebus_atys Pithecia_pithecia Ateles_geoffroyi Aotus_nancymaae Callicebus_donacophilus Alouatta_palliata Cebus_albifrons cebCap1 Saguinus_imperator saiBol1 Callithrix_jacchus Daubentonia_madagascariensis Lemur_catta Eulemur_fulvus Eulemur_flavifrons Propithecus_coquereli Indri_indri Cheirogaleus_medius Mirza_coquereli Microcebus_murinus Nycticebus_coucang Neomonachus_schauinslandi Leptonychotes_weddellii Mirounga_angustirostris Zalophus_californianus Ursus_maritimus Ailuropoda_melanoleuca Panthera_tigris Panthera_onca Panthera_pardus Acinonyx_jubatus Puma_concolor Felis_nigripes Cryptoprocta_ferox Felis_catus Ailurus_fulgens Lycaon_pictus Canis_lupus_familiaris Canis_lupus Vulpes_lagopus Hyaena_hyaena Paradoxurus_hermaphroditus Mellivora_capensis Enhydra_lutris Pteronura_brasiliensis Helogale_parvula Mungos_mungo Spilogale_gracilis Suricata_suricatta Mustela_putorius Eubalaena_japonica Eschrichtius_robustus Balaenoptera_bonaerensis Balaenoptera_acutorostrata Ziphius_cavirostris Monodon_monoceros Delphinapterus_leucas Mesoplodon_bidens Lipotes_vexillifer Tursiops_truncatus Neophocaena_asiaeorientalis Phocoena_phocoena Platanista_gangetica Inia_geoffrensis Kogia_breviceps Hippopotamus_amphibius Camelus_dromedarius Camelus_ferus Camelus_bactrianus Vicugna_pacos Sus_scrofa Giraffa_tippelskirchi Okapia_johnstoni Elaphurus_davidianus Catagonus_wagneri Bubalus_bubalis Rangifer_tarandus Odocoileus_virginianus Bison_bison bosMut1 Bos_indicus Bos_taurus Moschus_moschiferus Pantholops_hodgsonii Beatragus_hunteri Ovis_canadensis Ovis_aries Antilocapra_americana Hemitragus_hylocrius Ammotragus_lervia Capra_hircus Capra_aegagrus Saiga_tatarica Tragulus_javanicus Hipposideros_armiger Rhinolophus_sinicus pteAle1 Pteropus_vampyrus Tadarida_brasiliensis Hipposideros_galeritus eidHel1 Miniopterus_schreibersii Miniopterus_natalensis Macroglossus_sobrinus Rousettus_aegyptiacus Eptesicus_fuscus myoBra1 Myotis_myotis myoDav1 Mormoops_blainvillei Megaderma_lyra ptePar1 Desmodus_rotundus Craseonycteris_thonglongyai Anoura_caudifer Murina_feae Tonatia_saurophila Carollia_perspicillata Pipistrellus_pipistrellus Micronycteris_hirsuta Noctilio_leporinus Lasiurus_borealis Artibeus_jamaicensis Glis_glis Graphiurus_murinus Xerus_inauris Spermophilus_dauricus Castor_canadensis Aplodontia_rufa Marmota_marmota Hystrix_cristata Heterocephalus_glaber Muscardinus_avellanarius Cuniculus_paca chiLan1 Dasyprocta_punctata fukDam1 Ctenodactylus_gundi Dinomys_branickii Dolichotis_patagonum Hydrochoerus_hydrochaeris Cavia_tschudii Cavia_porcellus cavApe1 dipOrd2 Dipodomys_stephensi Nannospalax_galili Thryonomys_swinderianus Octodon_degus Allactaga_bullata Petromus_typicus Perognathus_longimembris Zapus_hudsonius Jaculus_jaculus Ctenomys_sociabilis Capromys_pilorides Myocastor_coypus Cricetomys_gambianus Peromyscus_maniculatus Onychomys_torridus Cricetulus_griseus Ellobius_talpinus Mesocricetus_auratus Ellobius_lutescens Psammomys_obesus Meriones_unguiculatus micOch1 Ondatra_zibethicus Acomys_cahirinus Sigmodon_hispidus Mus_caroli Mus_spretus Mus_pahari Rattus_norvegicus Galeopterus_variegatus Ceratotherium_simum_cottoni Ceratotherium_simum Diceros_bicornis Dicerorhinus_sumatrensis Tapirus_indicus Tapirus_terrestris Equus_asinus Equus_przewalskii Tupaia_tana tupChi1 Trichechus_manatus Loxodonta_africana Manis_pentadactyla Manis_javanica Choloepus_didactylus Choloepus_hoffmanni Tolypeutes_matacus Chaetophractus_vellerosus Oryctolagus_cuniculus Lepus_americanus Orycteropus_afer Dasypus_novemcinctus Myrmecophaga_tridactyla Tamandua_tetradactyla Solenodon_paradoxus Scalopus_aquaticus Procavia_capensis Heterohyrax_brucei Chrysochloris_asiatica Uropsilus_gracilis Condylura_cristata Ochotona_princeps Echinops_telfairi eleEdw1 Erinaceus_europaeus sorAra2 Microgale_talazaci\ speciesDefaultOn Pan_troglodytes otoGar3 odoRosDiv1 orcOrc1 myoLuc2 speTri2 Mus_musculus Equus_caballus Crocidura_indochinensis\ speciesGroups Primate Carnivore Cetartiodactyla Chiroptera Rodents Mammals\ speciesLabels Acinonyx_jubatus="cheetah"Acomys_cahirinus="Egyptian spiny mouse"Ailuropoda_melanoleuca="giant panda"Ailurus_fulgens="red panda"Allactaga_bullata="Gobi jerboa"Alouatta_palliata="mantled howler monkey"Ammotragus_lervia="aoudad"Anoura_caudifer="tailed tailless bat"Antilocapra_americana="pronghorn"Aotus_nancymaae="Ma's night monkey"Aplodontia_rufa="mountain beaver"Artibeus_jamaicensis="Jamaican fruit-eating bat"Ateles_geoffroyi="black-handed spider monkey"Balaenoptera_acutorostrata="Minke whale"Balaenoptera_bonaerensis="Antarctic minke whale"Beatragus_hunteri="hirola"Bison_bison="American bison"Bos_indicus="zebu cattle"Bos_taurus="cow"Bubalus_bubalis="water buffalo"Callicebus_donacophilus="white-eared titi monkey"Callithrix_jacchus="white-tufted-ear marmoset"Camelus_bactrianus="Bactrian camel"Camelus_dromedarius="Arabian camel"Camelus_ferus="wild Bactrian camel"Canis_lupus="wolf"Canis_lupus_familiaris="dog"Capra_aegagrus="wild goat"Capra_hircus="goat"Capromys_pilorides="Desmarest's hutia"Carollia_perspicillata="Seba's short-tailed bat"Castor_canadensis="American beaver"Catagonus_wagneri="Chacoan peccary"Cavia_porcellus="domestic guinea pig"Cavia_tschudii="Montane guinea pig"Cebus_albifrons="white-fronted capuchin"Ceratotherium_simum="white rhinoceros"Ceratotherium_simum_cottoni="northern white rhinoceros"Cercocebus_atys="sooty mangabey"Cercopithecus_neglectus="De Brazza's monkey"Chaetophractus_vellerosus="screaming hairy armadillo"Cheirogaleus_medius="lesser dwarf lemur"Chlorocebus_sabaeus="green monkey"Choloepus_didactylus="southern two-toed sloth"Choloepus_hoffmanni="Hoffmann's two-fingered sloth"Chrysochloris_asiatica="Cape golden mole"Condylura_cristata="star-nosed mole"Craseonycteris_thonglongyai="hog-nosed bat"Cricetomys_gambianus="Gambian giant pouched rat"Cricetulus_griseus="Chinese hamster"Crocidura_indochinensis="Indochinese shrew"Cryptoprocta_ferox="fossa"Ctenodactylus_gundi="northern gundi"Ctenomys_sociabilis="social tuco-tuco"Cuniculus_paca="lowland paca"Dasyprocta_punctata="punctate agouti"Dasypus_novemcinctus="nine-banded armadillo"Daubentonia_madagascariensis="aye-aye"Delphinapterus_leucas="beluga whale"Desmodus_rotundus="common vampire bat"Dicerorhinus_sumatrensis="Sumatran rhinoceros"Diceros_bicornis="black rhinoceros"Dinomys_branickii="pacarana"Dipodomys_stephensi="Stephens's kangaroo rat"Dolichotis_patagonum="Patagonian cavy"Echinops_telfairi="small Madagascar hedgehog"Elaphurus_davidianus="Pere David's deer"Ellobius_lutescens="Transcaucasian mole vole"Ellobius_talpinus="northern mole vole"Enhydra_lutris="sea otter"Eptesicus_fuscus="big brown bat"Equus_asinus="ass"Equus_caballus="horse"Equus_przewalskii="Przewalski's horse"Erinaceus_europaeus="western European hedgehog"Erythrocebus_patas="red guenon"Eschrichtius_robustus="grey whale"Eubalaena_japonica="North Pacific right whale"Eulemur_flavifrons="Sclater's lemur"Eulemur_fulvus="brown lemur"Felis_catus="domestic cat"Felis_nigripes="black-footed cat"Galeopterus_variegatus="Sunda flying lemur"Giraffa_tippelskirchi="Masai giraffe"Glis_glis="fat dormouse"Gorilla_gorilla="western gorilla"Graphiurus_murinus="woodland dormouse"Helogale_parvula="dwarf mongoose"Hemitragus_hylocrius="Nilgiri tahr"Heterocephalus_glaber="naked mole-rat"Heterohyrax_brucei="yellow-spotted hyrax"Hippopotamus_amphibius="hippopotamus"Hipposideros_armiger="great roundleaf bat"Hipposideros_galeritus="Cantor's roundleaf bat"Hyaena_hyaena="striped hyena"Hydrochoerus_hydrochaeris="capybara"Hystrix_cristata="crested porcupine"Indri_indri="babakoto"Inia_geoffrensis="boutu"Jaculus_jaculus="lesser Egyptian jerboa"Kogia_breviceps="pygmy sperm whale"Lasiurus_borealis="red bat"Lemur_catta="ring-tailed lemur"Leptonychotes_weddellii="Weddell seal"Lepus_americanus="snowshoe hare"Lipotes_vexillifer="Yangtze River dolphin"Loxodonta_africana="African savanna elephant"Lycaon_pictus="African hunting dog"Macaca_fascicularis="crab-eating macaque"Macaca_mulatta="Rhesus monkey"Macaca_nemestrina="pig-tailed macaque"Macroglossus_sobrinus="long-tongued fruit bat"Mandrillus_leucophaeus="drill"Manis_javanica="Malayan pangolin"Manis_pentadactyla="Chinese pangolin"Marmota_marmota="Alpine marmot"Megaderma_lyra="Indian false vampire"Mellivora_capensis="ratel"Meriones_unguiculatus="Mongolian gerbil"Mesocricetus_auratus="golden hamster"Mesoplodon_bidens="Sowerby's beaked whale"Microcebus_murinus="gray mouse lemur"Microgale_talazaci="Talazac's shrew tenrec"Micronycteris_hirsuta="hairy big-eared bat"Miniopterus_natalensis="Natal long-fingered bat"Miniopterus_schreibersii="Schreibers' long-fingered bat"Mirounga_angustirostris="northern elephant seal"Mirza_coquereli="Coquerel's giant mouse lemur"Monodon_monoceros="narwhal"Mormoops_blainvillei="Antillean ghost-faced bat"Moschus_moschiferus="Siberian musk deer"Mungos_mungo="banded mongoose"Murina_feae="Fea's tube-nosed bat"Mus_caroli="Ryukyu mouse"Mus_musculus="house mouse"Mus_pahari="shrew mouse"Mus_spretus="western wild mouse"Muscardinus_avellanarius="hazel dormouse"Mustela_putorius="European polecat"Myocastor_coypus="nutria"Myotis_myotis="greater mouse-eared bat"Myrmecophaga_tridactyla="giant anteater"Nannospalax_galili="Upper Galilee mountains blind mole rat"Nasalis_larvatus="proboscis monkey"Neomonachus_schauinslandi="Hawaiian monk seal"Neophocaena_asiaeorientalis="narrow-ridged finless porpoise"Noctilio_leporinus="greater bulldog bat"Nycticebus_coucang="slow loris"Ochotona_princeps="American pika"Octodon_degus="degu"Odocoileus_virginianus="white-tailed deer"Okapia_johnstoni="okapi"Ondatra_zibethicus="muskrat"Onychomys_torridus="southern grasshopper mouse"Orycteropus_afer="aardvark"Oryctolagus_cuniculus="rabbit"Ovis_aries="sheep"Ovis_canadensis="bighorn sheep"Pan_paniscus="pygmy chimpanzee"Pan_troglodytes="chimpanzee"Panthera_onca="jaguar"Panthera_pardus="leopard"Panthera_tigris="tiger"Pantholops_hodgsonii="chiru"Papio_anubis="olive baboon"Paradoxurus_hermaphroditus="Asian palm civet"Perognathus_longimembris="little pocket mouse"Peromyscus_maniculatus="deer mouse"Petromus_typicus="dassie-rat"Phocoena_phocoena="harbor porpoise"Piliocolobus_tephrosceles="Ugandan red Colobus"Pipistrellus_pipistrellus="common pipistrelle"Pithecia_pithecia="white-faced saki"Platanista_gangetica="Ganges River dolphin"Pongo_abelii="Sumatran orangutan"Procavia_capensis="Cape rock hyrax"Propithecus_coquereli="Coquerel's sifaka"Psammomys_obesus="fat sand rat"Pteronura_brasiliensis="giant otter"Pteropus_vampyrus="large flying fox"Puma_concolor="puma"Pygathrix_nemaeus="red shanked douc langur"Rangifer_tarandus="reindeer"Rattus_norvegicus="Norway rat"Rhinolophus_sinicus="Chinese rufous horseshoe bat"Rhinopithecus_bieti="black snub-nosed monkey"Rhinopithecus_roxellana="golden snub-nosed monkey"Rousettus_aegyptiacus="Egyptian rousette"Saguinus_imperator="tamarin"Saiga_tatarica="Saiga antelope"Scalopus_aquaticus="eastern mole"Semnopithecus_entellus="Hanuman langur"Sigmodon_hispidus="hispid cotton rat"Solenodon_paradoxus="Hispaniolan solenodon"Spermophilus_dauricus="Daurian ground squirrel"Spilogale_gracilis="western spotted skunk"Suricata_suricatta="meerkat"Sus_scrofa="pig"Tadarida_brasiliensis="Brazilian free-tailed bat"Tamandua_tetradactyla="southern tamandua"Tapirus_indicus="Asiatic tapir"Tapirus_terrestris="Brazilian tapir"Thryonomys_swinderianus="greater cane rat"Tolypeutes_matacus="placentals"Tonatia_saurophila="stripe-headed round-eared bat"Tragulus_javanicus="Java mouse-deer"Trichechus_manatus="West Indian manatee"Tupaia_tana="large tree shrew"Tursiops_truncatus="common bottlenose dolphin"Uropsilus_gracilis="gracile shrew mole"Ursus_maritimus="polar bear"Vicugna_pacos="alpaca"Vulpes_lagopus="Arctic fox"Xerus_inauris="South African ground squirrel"Zalophus_californianus="California sea lion"Zapus_hudsonius="meadow jumping mouse"Ziphius_cavirostris="Cuvier's beaked whale"\ subGroups view=align clade=mammals\ summary https://hgdownload.soe.ucsc.edu/goldenPath/hg38/cactus241way/cactus241waySummary.bb\ track cactus241wayBM\ type bigMaf\ viewUi on\ encTfChipPkENCFF587POH GM12878 MTA2 narrowPeak Transcription Factor ChIP-seq Peaks of MTA2 in GM12878 from ENCODE 3 (ENCFF587POH) 0 145 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of MTA2 in GM12878 from ENCODE 3 (ENCFF587POH)\ parent encTfChipPk off\ shortLabel GM12878 MTA2\ subGroups cellType=GM12878 factor=MTA2\ track encTfChipPkENCFF587POH\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day07Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_forward 1 145 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep2.CNhs13719.13346-143D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13346-143D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day07Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_forward 0 145 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep2.CNhs13719.13346-143D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13346-143D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472685v1 HG01071.mat chain GCA_018472685.1 HG01071.mat HG01071.pri.mat.f1_v2 (May 2021 GCA_018472685.1_HG01071.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 145 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01071.mat HG01071.pri.mat.f1_v2 (May 2021 GCA_018472685.1_HG01071.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472685.1\ parent hprcChainNetViewchain off\ priority 51\ shortLabel HG01071.mat\ subGroups view=chain sample=s051 population=amr subpop=pur hap=mat\ track chainHprcGCA_018472685v1\ type chain GCA_018472685.1\ wgEncodeRegDnaseUwHsmmHotspot HSMM Ht bigBed 6 + HSMM skeletal muscle myoblast DNaseI Hotspots from ENCODE 0 145 85 255 190 170 255 222 1 0 0 regulation 1 color 85,255,190\ longLabel HSMM skeletal muscle myoblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot on\ shortLabel HSMM Ht\ subGroups view=b_Hot cellType=HSMM treatment=n_a tissue=muscle cancer=normal\ track wgEncodeRegDnaseUwHsmmHotspot\ type bigBed 6 +\ encTfChipPkENCFF661FMB GM12878 MTA3 narrowPeak Transcription Factor ChIP-seq Peaks of MTA3 in GM12878 from ENCODE 3 (ENCFF661FMB) 0 146 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of MTA3 in GM12878 from ENCODE 3 (ENCFF661FMB)\ parent encTfChipPk off\ shortLabel GM12878 MTA3\ subGroups cellType=GM12878 factor=MTA3\ track encTfChipPkENCFF661FMB\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_tpm_rev Hes3-gfpCardiomyocyticInduction_Day07Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_reverse 1 146 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep2.CNhs13719.13346-143D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13346-143D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_ctss_rev Hes3-gfpCardiomyocyticInduction_Day07Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_reverse 0 146 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep2.CNhs13719.13346-143D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13346-143D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7\ urlLabel FANTOM5 Details:\ netHprcGCA_018472685v1 HG01071.mat netAlign GCA_018472685.1 chainHprcGCA_018472685v1 HG01071.mat HG01071.pri.mat.f1_v2 (May 2021 GCA_018472685.1_HG01071.pri.mat.f1_v2) HPRC project computed Chain Nets 1 146 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01071.mat HG01071.pri.mat.f1_v2 (May 2021 GCA_018472685.1_HG01071.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472685.1\ parent hprcChainNetViewnet off\ priority 51\ shortLabel HG01071.mat\ subGroups view=net sample=s051 population=amr subpop=pur hap=mat\ track netHprcGCA_018472685v1\ type netAlign GCA_018472685.1 chainHprcGCA_018472685v1\ wgEncodeRegDnaseUwLhcnm2Hotspot LHCN-M2 Ht bigBed 6 + LHCN-M2 skeletal myoblast DNaseI Hotspots from ENCODE 0 146 85 255 193 170 255 224 1 0 0 regulation 1 color 85,255,193\ longLabel LHCN-M2 skeletal myoblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel LHCN-M2 Ht\ subGroups view=b_Hot cellType=LHCN-M2 treatment=n_a tissue=muscle cancer=unknown\ track wgEncodeRegDnaseUwLhcnm2Hotspot\ type bigBed 6 +\ encTfChipPkENCFF199HGX GM12878 MXI1 narrowPeak Transcription Factor ChIP-seq Peaks of MXI1 in GM12878 from ENCODE 3 (ENCFF199HGX) 0 147 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of MXI1 in GM12878 from ENCODE 3 (ENCFF199HGX)\ parent encTfChipPk off\ shortLabel GM12878 MXI1\ subGroups cellType=GM12878 factor=MXI1\ track encTfChipPkENCFF199HGX\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day07Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_forward 1 147 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep3.CNhs13731.13358-143F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13358-143F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day07Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_forward 0 147 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep3.CNhs13731.13358-143F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13358-143F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472765v1 HG00735.mat chain GCA_018472765.1 HG00735.mat HG00735.pri.mat.f1_v2 (May 2021 GCA_018472765.1_HG00735.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 147 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00735.mat HG00735.pri.mat.f1_v2 (May 2021 GCA_018472765.1_HG00735.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472765.1\ parent hprcChainNetViewchain off\ priority 54\ shortLabel HG00735.mat\ subGroups view=chain sample=s054 population=amr subpop=pur hap=mat\ track chainHprcGCA_018472765v1\ type chain GCA_018472765.1\ wgEncodeRegDnaseUwLhcnm2Diff4dHotspot LHCN-M2 diff4d Ht bigBed 6 + LHCN-M2 skeletal myoblast (diff 4d) DNaseI Hotspots from ENCODE 0 147 85 255 198 170 255 226 1 0 0 regulation 1 color 85,255,198\ longLabel LHCN-M2 skeletal myoblast (diff 4d) DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel LHCN-M2 diff4d Ht\ subGroups view=b_Hot cellType=LHCN-M2 treatment=DIFF_4d tissue=muscle cancer=unknown\ track wgEncodeRegDnaseUwLhcnm2Diff4dHotspot\ type bigBed 6 +\ encTfChipPkENCFF402TSJ GM12878 MYB narrowPeak Transcription Factor ChIP-seq Peaks of MYB in GM12878 from ENCODE 3 (ENCFF402TSJ) 0 148 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of MYB in GM12878 from ENCODE 3 (ENCFF402TSJ)\ parent encTfChipPk off\ shortLabel GM12878 MYB\ subGroups cellType=GM12878 factor=MYB\ track encTfChipPkENCFF402TSJ\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_tpm_rev Hes3-gfpCardiomyocyticInduction_Day07Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_reverse 1 148 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep3.CNhs13731.13358-143F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13358-143F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_ctss_rev Hes3-gfpCardiomyocyticInduction_Day07Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_reverse 0 148 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep3.CNhs13731.13358-143F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13358-143F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1\ urlLabel FANTOM5 Details:\ netHprcGCA_018472765v1 HG00735.mat netAlign GCA_018472765.1 chainHprcGCA_018472765v1 HG00735.mat HG00735.pri.mat.f1_v2 (May 2021 GCA_018472765.1_HG00735.pri.mat.f1_v2) HPRC project computed Chain Nets 1 148 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00735.mat HG00735.pri.mat.f1_v2 (May 2021 GCA_018472765.1_HG00735.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472765.1\ parent hprcChainNetViewnet off\ priority 54\ shortLabel HG00735.mat\ subGroups view=net sample=s054 population=amr subpop=pur hap=mat\ track netHprcGCA_018472765v1\ type netAlign GCA_018472765.1 chainHprcGCA_018472765v1\ wgEncodeRegDnaseUwHsmmtubeHotspot HSMMtube Ht bigBed 6 + HSMMtube skeletal muscle myotube DNaseI Hotspots from ENCODE 0 148 85 255 204 170 255 229 1 0 0 regulation 1 color 85,255,204\ longLabel HSMMtube skeletal muscle myotube DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HSMMtube Ht\ subGroups view=b_Hot cellType=HSMMtube treatment=n_a tissue=muscle cancer=normal\ track wgEncodeRegDnaseUwHsmmtubeHotspot\ type bigBed 6 +\ encTfChipPkENCFF811VEN GM12878 NBN narrowPeak Transcription Factor ChIP-seq Peaks of NBN in GM12878 from ENCODE 3 (ENCFF811VEN) 0 149 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of NBN in GM12878 from ENCODE 3 (ENCFF811VEN)\ parent encTfChipPk off\ shortLabel GM12878 NBN\ subGroups cellType=GM12878 factor=NBN\ track encTfChipPkENCFF811VEN\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day08Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_forward 1 149 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep1.CNhs13660.13335-143C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13335-143C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day08Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_forward 0 149 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep1.CNhs13660.13335-143C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13335-143C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5\ urlLabel FANTOM5 Details:\ chainHprcGCA_018504365v1 HG01109.mat chain GCA_018504365.1 HG01109.mat HG01109.pri.mat.f1_v2 (May 2021 GCA_018504365.1_HG01109.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 149 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01109.mat HG01109.pri.mat.f1_v2 (May 2021 GCA_018504365.1_HG01109.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504365.1\ parent hprcChainNetViewchain off\ priority 56\ shortLabel HG01109.mat\ subGroups view=chain sample=s056 population=amr subpop=pur hap=mat\ track chainHprcGCA_018504365v1\ type chain GCA_018504365.1\ wgEncodeRegDnaseUwHuvecHotspot HUVEC Ht bigBed 6 + HUVEC umbilical vein endothelial cell DNaseI Hotspots from ENCODE 0 149 85 255 215 170 255 235 1 0 0 regulation 1 color 85,255,215\ longLabel HUVEC umbilical vein endothelial cell DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot on\ shortLabel HUVEC Ht\ subGroups view=b_Hot cellType=HUVEC treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHuvecHotspot\ type bigBed 6 +\ encTfChipPkENCFF138ZBJ GM12878 NFATC1 narrowPeak Transcription Factor ChIP-seq Peaks of NFATC1 in GM12878 from ENCODE 3 (ENCFF138ZBJ) 0 150 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of NFATC1 in GM12878 from ENCODE 3 (ENCFF138ZBJ)\ parent encTfChipPk off\ shortLabel GM12878 NFATC1\ subGroups cellType=GM12878 factor=NFATC1\ track encTfChipPkENCFF138ZBJ\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_tpm_rev Hes3-gfpCardiomyocyticInduction_Day08Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_reverse 1 150 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep1.CNhs13660.13335-143C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13335-143C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_ctss_rev Hes3-gfpCardiomyocyticInduction_Day08Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_reverse 0 150 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep1.CNhs13660.13335-143C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13335-143C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5\ urlLabel FANTOM5 Details:\ netHprcGCA_018504365v1 HG01109.mat netAlign GCA_018504365.1 chainHprcGCA_018504365v1 HG01109.mat HG01109.pri.mat.f1_v2 (May 2021 GCA_018504365.1_HG01109.pri.mat.f1_v2) HPRC project computed Chain Nets 1 150 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01109.mat HG01109.pri.mat.f1_v2 (May 2021 GCA_018504365.1_HG01109.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504365.1\ parent hprcChainNetViewnet off\ priority 56\ shortLabel HG01109.mat\ subGroups view=net sample=s056 population=amr subpop=pur hap=mat\ track netHprcGCA_018504365v1\ type netAlign GCA_018504365.1 chainHprcGCA_018504365v1\ wgEncodeRegDnaseUwHmveclblHotspot HMVEC-LBl Ht bigBed 6 + HMVEC-LBl lung microvascular epithelium. blood DNaseI Hotspots from ENCODE 0 150 85 255 220 170 255 237 1 0 0 regulation 1 color 85,255,220\ longLabel HMVEC-LBl lung microvascular epithelium. blood DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HMVEC-LBl Ht\ subGroups view=b_Hot cellType=HMVEC-LBl treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmveclblHotspot\ type bigBed 6 +\ encTfChipPkENCFF704PDA GM12878 NFATC3 narrowPeak Transcription Factor ChIP-seq Peaks of NFATC3 in GM12878 from ENCODE 3 (ENCFF704PDA) 0 151 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of NFATC3 in GM12878 from ENCODE 3 (ENCFF704PDA)\ parent encTfChipPk off\ shortLabel GM12878 NFATC3\ subGroups cellType=GM12878 factor=NFATC3\ track encTfChipPkENCFF704PDA\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day08Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_forward 1 151 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep2.CNhs13720.13347-143D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13347-143D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day08Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_forward 0 151 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep2.CNhs13720.13347-143D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13347-143D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8\ urlLabel FANTOM5 Details:\ chainHprcGCA_018504375v1 HG01243.mat chain GCA_018504375.1 HG01243.mat HG01243.pri.mat.f1_v2 (May 2021 GCA_018504375.1_HG01243.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 151 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01243.mat HG01243.pri.mat.f1_v2 (May 2021 GCA_018504375.1_HG01243.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504375.1\ parent hprcChainNetViewchain off\ priority 57\ shortLabel HG01243.mat\ subGroups view=chain sample=s057 population=amr subpop=pur hap=mat\ track chainHprcGCA_018504375v1\ type chain GCA_018504375.1\ wgEncodeRegDnaseUwHmvecdbladHotspot HMVEC-dBl-Ad Ht bigBed 6 + HMVEC-dBl-Ad dermal MV endothelial cell, blood DNaseI Hotspots from ENCODE 0 151 85 255 224 170 255 239 1 0 0 regulation 1 color 85,255,224\ longLabel HMVEC-dBl-Ad dermal MV endothelial cell, blood DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HMVEC-dBl-Ad Ht\ subGroups view=b_Hot cellType=HMVEC-dBl-Ad treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdbladHotspot\ type bigBed 6 +\ encTfChipPkENCFF743UMZ GM12878 NFE2 narrowPeak Transcription Factor ChIP-seq Peaks of NFE2 in GM12878 from ENCODE 3 (ENCFF743UMZ) 0 152 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of NFE2 in GM12878 from ENCODE 3 (ENCFF743UMZ)\ parent encTfChipPk off\ shortLabel GM12878 NFE2\ subGroups cellType=GM12878 factor=NFE2\ track encTfChipPkENCFF743UMZ\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_tpm_rev Hes3-gfpCardiomyocyticInduction_Day08Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_reverse 1 152 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep2.CNhs13720.13347-143D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13347-143D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_ctss_rev Hes3-gfpCardiomyocyticInduction_Day08Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_reverse 0 152 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep2.CNhs13720.13347-143D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13347-143D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8\ urlLabel FANTOM5 Details:\ netHprcGCA_018504375v1 HG01243.mat netAlign GCA_018504375.1 chainHprcGCA_018504375v1 HG01243.mat HG01243.pri.mat.f1_v2 (May 2021 GCA_018504375.1_HG01243.pri.mat.f1_v2) HPRC project computed Chain Nets 1 152 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01243.mat HG01243.pri.mat.f1_v2 (May 2021 GCA_018504375.1_HG01243.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504375.1\ parent hprcChainNetViewnet off\ priority 57\ shortLabel HG01243.mat\ subGroups view=net sample=s057 population=amr subpop=pur hap=mat\ track netHprcGCA_018504375v1\ type netAlign GCA_018504375.1 chainHprcGCA_018504375v1\ wgEncodeRegDnaseUwHmvecdlyneoHotspot HMVEC-dLy-Neo Ht bigBed 6 + HMVEC-dLy-Neo dermal MV endo cell, neonate lymph DNaseI Hotspots from ENCODE 0 152 85 255 226 170 255 240 1 0 0 regulation 1 color 85,255,226\ longLabel HMVEC-dLy-Neo dermal MV endo cell, neonate lymph DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HMVEC-dLy-Neo Ht\ subGroups view=b_Hot cellType=HMVEC-dLy-Neo treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdlyneoHotspot\ type bigBed 6 +\ encTfChipPkENCFF480WDX GM12878 NFIC narrowPeak Transcription Factor ChIP-seq Peaks of NFIC in GM12878 from ENCODE 3 (ENCFF480WDX) 0 153 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of NFIC in GM12878 from ENCODE 3 (ENCFF480WDX)\ parent encTfChipPk off\ shortLabel GM12878 NFIC\ subGroups cellType=GM12878 factor=NFIC\ track encTfChipPkENCFF480WDX\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day08Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_forward 1 153 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep3.CNhs13732.13359-143F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13359-143F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day08Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_forward 0 153 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep3.CNhs13732.13359-143F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13359-143F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2\ urlLabel FANTOM5 Details:\ chainHprcGCA_018506975v1 HG00733.mat chain GCA_018506975.1 HG00733.mat HG00733.pri.mat.f1_v2 (May 2021 GCA_018506975.1_HG00733.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 153 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00733.mat HG00733.pri.mat.f1_v2 (May 2021 GCA_018506975.1_HG00733.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018506975.1\ parent hprcChainNetViewchain off\ priority 60\ shortLabel HG00733.mat\ subGroups view=chain sample=s060 population=amr subpop=pur hap=mat\ track chainHprcGCA_018506975v1\ type chain GCA_018506975.1\ wgEncodeRegDnaseUwHmvecdblneoHotspot HMVEC-dBl-Neo Ht bigBed 6 + HMVEC-dBl-Neo dermal MV endo cell, neonate blood DNaseI Hotspots from ENCODE 0 153 85 255 229 170 255 242 1 0 0 regulation 1 color 85,255,229\ longLabel HMVEC-dBl-Neo dermal MV endo cell, neonate blood DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HMVEC-dBl-Neo Ht\ subGroups view=b_Hot cellType=HMVEC-dBl-Neo treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdblneoHotspot\ type bigBed 6 +\ encTfChipPkENCFF860IXB GM12878 NFXL1 narrowPeak Transcription Factor ChIP-seq Peaks of NFXL1 in GM12878 from ENCODE 3 (ENCFF860IXB) 0 154 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of NFXL1 in GM12878 from ENCODE 3 (ENCFF860IXB)\ parent encTfChipPk off\ shortLabel GM12878 NFXL1\ subGroups cellType=GM12878 factor=NFXL1\ track encTfChipPkENCFF860IXB\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_tpm_rev Hes3-gfpCardiomyocyticInduction_Day08Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_reverse 1 154 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep3.CNhs13732.13359-143F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13359-143F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_ctss_rev Hes3-gfpCardiomyocyticInduction_Day08Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_reverse 0 154 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep3.CNhs13732.13359-143F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13359-143F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2\ urlLabel FANTOM5 Details:\ netHprcGCA_018506975v1 HG00733.mat netAlign GCA_018506975.1 chainHprcGCA_018506975v1 HG00733.mat HG00733.pri.mat.f1_v2 (May 2021 GCA_018506975.1_HG00733.pri.mat.f1_v2) HPRC project computed Chain Nets 1 154 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00733.mat HG00733.pri.mat.f1_v2 (May 2021 GCA_018506975.1_HG00733.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018506975.1\ parent hprcChainNetViewnet off\ priority 60\ shortLabel HG00733.mat\ subGroups view=net sample=s060 population=amr subpop=pur hap=mat\ track netHprcGCA_018506975v1\ type netAlign GCA_018506975.1 chainHprcGCA_018506975v1\ wgEncodeRegDnaseUwHrgecHotspot HRGEC Ht bigBed 6 + HRGEC renal glomerular endothelial cell DNaseI Hotspots from ENCODE 0 154 85 255 232 170 255 243 1 0 0 regulation 1 color 85,255,232\ longLabel HRGEC renal glomerular endothelial cell DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HRGEC Ht\ subGroups view=b_Hot cellType=HRGEC treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwHrgecHotspot\ type bigBed 6 +\ encTfChipPkENCFF278GJK GM12878 NFYA narrowPeak Transcription Factor ChIP-seq Peaks of NFYA in GM12878 from ENCODE 3 (ENCFF278GJK) 0 155 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of NFYA in GM12878 from ENCODE 3 (ENCFF278GJK)\ parent encTfChipPk off\ shortLabel GM12878 NFYA\ subGroups cellType=GM12878 factor=NFYA\ track encTfChipPkENCFF278GJK\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day09Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_forward 1 155 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep1.CNhs13661.13336-143C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13336-143C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day09Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_forward 0 155 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep1.CNhs13661.13336-143C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13336-143C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6\ urlLabel FANTOM5 Details:\ chainHprcGCA_018471065v1 HG01175.pat chain GCA_018471065.1 HG01175.pat HG01175.alt.pat.f1_v2 (May 2021 GCA_018471065.1_HG01175.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 155 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01175.pat HG01175.alt.pat.f1_v2 (May 2021 GCA_018471065.1_HG01175.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471065.1\ parent hprcChainNetViewchain off\ priority 45\ shortLabel HG01175.pat\ subGroups view=chain sample=s045 population=amr subpop=pur hap=pat\ track chainHprcGCA_018471065v1\ type chain GCA_018471065.1\ wgEncodeRegDnaseUwHmvecllyHotspot HMVEC-LLy Ht bigBed 6 + HMVEC-LLy lung microvascular endothelial cell, lymph DNaseI Hotspots from ENCODE 0 155 85 255 243 170 255 249 1 0 0 regulation 1 color 85,255,243\ longLabel HMVEC-LLy lung microvascular endothelial cell, lymph DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HMVEC-LLy Ht\ subGroups view=b_Hot cellType=HMVEC-LLy treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecllyHotspot\ type bigBed 6 +\ encTfChipPkENCFF510NDO GM12878 NFYB narrowPeak Transcription Factor ChIP-seq Peaks of NFYB in GM12878 from ENCODE 3 (ENCFF510NDO) 0 156 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of NFYB in GM12878 from ENCODE 3 (ENCFF510NDO)\ parent encTfChipPk off\ shortLabel GM12878 NFYB\ subGroups cellType=GM12878 factor=NFYB\ track encTfChipPkENCFF510NDO\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_tpm_rev Hes3-gfpCardiomyocyticInduction_Day09Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_reverse 1 156 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep1.CNhs13661.13336-143C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13336-143C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_ctss_rev Hes3-gfpCardiomyocyticInduction_Day09Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_reverse 0 156 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep1.CNhs13661.13336-143C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13336-143C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6\ urlLabel FANTOM5 Details:\ netHprcGCA_018471065v1 HG01175.pat netAlign GCA_018471065.1 chainHprcGCA_018471065v1 HG01175.pat HG01175.alt.pat.f1_v2 (May 2021 GCA_018471065.1_HG01175.alt.pat.f1_v2) HPRC project computed Chain Nets 1 156 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01175.pat HG01175.alt.pat.f1_v2 (May 2021 GCA_018471065.1_HG01175.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471065.1\ parent hprcChainNetViewnet off\ priority 45\ shortLabel HG01175.pat\ subGroups view=net sample=s045 population=amr subpop=pur hap=pat\ track netHprcGCA_018471065v1\ type netAlign GCA_018471065.1 chainHprcGCA_018471065v1\ wgEncodeRegDnaseUwHmvecdneoHotspot HMVEC-dNeo Ht bigBed 6 + HMVEC-dNeo dermal microvascular endo cell, neonate DNaseI Hotspots from ENCODE 0 156 85 255 244 170 255 249 1 0 0 regulation 1 color 85,255,244\ longLabel HMVEC-dNeo dermal microvascular endo cell, neonate DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HMVEC-dNeo Ht\ subGroups view=b_Hot cellType=HMVEC-dNeo treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdneoHotspot\ type bigBed 6 +\ encTfChipPkENCFF434HVY GM12878 NR2C2 narrowPeak Transcription Factor ChIP-seq Peaks of NR2C2 in GM12878 from ENCODE 3 (ENCFF434HVY) 0 157 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of NR2C2 in GM12878 from ENCODE 3 (ENCFF434HVY)\ parent encTfChipPk off\ shortLabel GM12878 NR2C2\ subGroups cellType=GM12878 factor=NR2C2\ track encTfChipPkENCFF434HVY\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day09Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_forward 1 157 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep2.CNhs13721.13348-143D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13348-143D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day09Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_forward 0 157 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep2.CNhs13721.13348-143D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13348-143D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9\ urlLabel FANTOM5 Details:\ chainHprcGCA_018471075v1 HG01106.pat chain GCA_018471075.1 HG01106.pat HG01106.alt.pat.f1_v2 (May 2021 GCA_018471075.1_HG01106.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 157 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01106.pat HG01106.alt.pat.f1_v2 (May 2021 GCA_018471075.1_HG01106.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471075.1\ parent hprcChainNetViewchain off\ priority 46\ shortLabel HG01106.pat\ subGroups view=chain sample=s046 population=amr subpop=pur hap=pat\ track chainHprcGCA_018471075v1\ type chain GCA_018471075.1\ wgEncodeRegDnaseUwHmvecdadHotspot HMVEC-dAd Ht bigBed 6 + HMVEC-dAd dermal microvascular endothelial cell DNaseI Hotspots from ENCODE 0 157 85 255 246 170 255 250 1 0 0 regulation 1 color 85,255,246\ longLabel HMVEC-dAd dermal microvascular endothelial cell DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HMVEC-dAd Ht\ subGroups view=b_Hot cellType=HMVEC-dAd treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdadHotspot\ type bigBed 6 +\ encTfChipPkENCFF652BRY GM12878 NRF1 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in GM12878 from ENCODE 3 (ENCFF652BRY) 0 158 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in GM12878 from ENCODE 3 (ENCFF652BRY)\ parent encTfChipPk off\ shortLabel GM12878 NRF1\ subGroups cellType=GM12878 factor=NRF1\ track encTfChipPkENCFF652BRY\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_tpm_rev Hes3-gfpCardiomyocyticInduction_Day09Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_reverse 1 158 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep2.CNhs13721.13348-143D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13348-143D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_ctss_rev Hes3-gfpCardiomyocyticInduction_Day09Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_reverse 0 158 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep2.CNhs13721.13348-143D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13348-143D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9\ urlLabel FANTOM5 Details:\ netHprcGCA_018471075v1 HG01106.pat netAlign GCA_018471075.1 chainHprcGCA_018471075v1 HG01106.pat HG01106.alt.pat.f1_v2 (May 2021 GCA_018471075.1_HG01106.alt.pat.f1_v2) HPRC project computed Chain Nets 1 158 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01106.pat HG01106.alt.pat.f1_v2 (May 2021 GCA_018471075.1_HG01106.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471075.1\ parent hprcChainNetViewnet off\ priority 46\ shortLabel HG01106.pat\ subGroups view=net sample=s046 population=amr subpop=pur hap=pat\ track netHprcGCA_018471075v1\ type netAlign GCA_018471075.1 chainHprcGCA_018471075v1\ wgEncodeRegDnaseUwHrcepicHotspot HRCEpiC Ht bigBed 6 + HRCEpiC renal cortical epithelium DNaseI Hotspots from ENCODE 0 158 85 251 255 170 253 255 1 0 0 regulation 1 color 85,251,255\ longLabel HRCEpiC renal cortical epithelium DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HRCEpiC Ht\ subGroups view=b_Hot cellType=HRCEpiC treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwHrcepicHotspot\ type bigBed 6 +\ encTfChipPkENCFF946SAG GM12878 PAX5 narrowPeak Transcription Factor ChIP-seq Peaks of PAX5 in GM12878 from ENCODE 3 (ENCFF946SAG) 0 159 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of PAX5 in GM12878 from ENCODE 3 (ENCFF946SAG)\ parent encTfChipPk off\ shortLabel GM12878 PAX5\ subGroups cellType=GM12878 factor=PAX5\ track encTfChipPkENCFF946SAG\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day09Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_forward 1 159 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep3.CNhs13733.13360-143F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13360-143F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day09Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_forward 0 159 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep3.CNhs13733.13360-143F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13360-143F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3\ urlLabel FANTOM5 Details:\ chainHprcGCA_018471105v1 HG00741.pat chain GCA_018471105.1 HG00741.pat HG00741.alt.pat.f1_v2 (May 2021 GCA_018471105.1_HG00741.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 159 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00741.pat HG00741.alt.pat.f1_v2 (May 2021 GCA_018471105.1_HG00741.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471105.1\ parent hprcChainNetViewchain off\ priority 49\ shortLabel HG00741.pat\ subGroups view=chain sample=s049 population=amr subpop=pur hap=pat\ track chainHprcGCA_018471105v1\ type chain GCA_018471105.1\ wgEncodeRegDnaseUwHreHotspot HRE Ht bigBed 6 + HRE renal epithelium DNaseI Hotspots from ENCODE 0 159 85 248 255 170 251 255 1 0 0 regulation 1 color 85,248,255\ longLabel HRE renal epithelium DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HRE Ht\ subGroups view=b_Hot cellType=HRE treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwHreHotspot\ type bigBed 6 +\ encTfChipPkENCFF992JWY GM12878 PAX8 narrowPeak Transcription Factor ChIP-seq Peaks of PAX8 in GM12878 from ENCODE 3 (ENCFF992JWY) 0 160 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of PAX8 in GM12878 from ENCODE 3 (ENCFF992JWY)\ parent encTfChipPk off\ shortLabel GM12878 PAX8\ subGroups cellType=GM12878 factor=PAX8\ track encTfChipPkENCFF992JWY\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_tpm_rev Hes3-gfpCardiomyocyticInduction_Day09Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_reverse 1 160 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep3.CNhs13733.13360-143F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13360-143F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_ctss_rev Hes3-gfpCardiomyocyticInduction_Day09Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_reverse 0 160 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep3.CNhs13733.13360-143F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13360-143F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3\ urlLabel FANTOM5 Details:\ netHprcGCA_018471105v1 HG00741.pat netAlign GCA_018471105.1 chainHprcGCA_018471105v1 HG00741.pat HG00741.alt.pat.f1_v2 (May 2021 GCA_018471105.1_HG00741.alt.pat.f1_v2) HPRC project computed Chain Nets 1 160 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00741.pat HG00741.alt.pat.f1_v2 (May 2021 GCA_018471105.1_HG00741.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471105.1\ parent hprcChainNetViewnet off\ priority 49\ shortLabel HG00741.pat\ subGroups view=net sample=s049 population=amr subpop=pur hap=pat\ track netHprcGCA_018471105v1\ type netAlign GCA_018471105.1 chainHprcGCA_018471105v1\ wgEncodeRegDnaseUwNhekHotspot NHEK Ht bigBed 6 + NHEK epidermal keratinocyte DNaseI Hotspots from ENCODE 0 160 85 238 255 170 246 255 1 0 0 regulation 1 color 85,238,255\ longLabel NHEK epidermal keratinocyte DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot on\ shortLabel NHEK Ht\ subGroups view=b_Hot cellType=NHEK treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwNhekHotspot\ type bigBed 6 +\ encTfChipPkENCFF926LHG GM12878 PBX3 narrowPeak Transcription Factor ChIP-seq Peaks of PBX3 in GM12878 from ENCODE 3 (ENCFF926LHG) 0 161 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of PBX3 in GM12878 from ENCODE 3 (ENCFF926LHG)\ parent encTfChipPk off\ shortLabel GM12878 PBX3\ subGroups cellType=GM12878 factor=PBX3\ track encTfChipPkENCFF926LHG\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day10Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_forward 1 161 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep1.CNhs13662.13337-143C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13337-143C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day10Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_forward 0 161 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep1.CNhs13662.13337-143C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13337-143C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472715v1 HG00735.pat chain GCA_018472715.1 HG00735.pat HG00735.alt.pat.f1_v2 (May 2021 GCA_018472715.1_HG00735.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 161 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00735.pat HG00735.alt.pat.f1_v2 (May 2021 GCA_018472715.1_HG00735.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472715.1\ parent hprcChainNetViewchain off\ priority 52\ shortLabel HG00735.pat\ subGroups view=chain sample=s052 population=amr subpop=pur hap=pat\ track chainHprcGCA_018472715v1\ type chain GCA_018472715.1\ wgEncodeRegDnaseUwSaecHotspot SAEC Ht bigBed 6 + SAEC small airway epithelium DNaseI Hotspots from ENCODE 0 161 85 231 255 170 243 255 1 0 0 regulation 1 color 85,231,255\ longLabel SAEC small airway epithelium DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel SAEC Ht\ subGroups view=b_Hot cellType=SAEC treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwSaecHotspot\ type bigBed 6 +\ encTfChipPkENCFF335ADU GM12878 PKNOX1 narrowPeak Transcription Factor ChIP-seq Peaks of PKNOX1 in GM12878 from ENCODE 3 (ENCFF335ADU) 0 162 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of PKNOX1 in GM12878 from ENCODE 3 (ENCFF335ADU)\ parent encTfChipPk off\ shortLabel GM12878 PKNOX1\ subGroups cellType=GM12878 factor=PKNOX1\ track encTfChipPkENCFF335ADU\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_tpm_rev Hes3-gfpCardiomyocyticInduction_Day10Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_reverse 1 162 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep1.CNhs13662.13337-143C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13337-143C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_ctss_rev Hes3-gfpCardiomyocyticInduction_Day10Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_reverse 0 162 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep1.CNhs13662.13337-143C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13337-143C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7\ urlLabel FANTOM5 Details:\ netHprcGCA_018472715v1 HG00735.pat netAlign GCA_018472715.1 chainHprcGCA_018472715v1 HG00735.pat HG00735.alt.pat.f1_v2 (May 2021 GCA_018472715.1_HG00735.alt.pat.f1_v2) HPRC project computed Chain Nets 1 162 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00735.pat HG00735.alt.pat.f1_v2 (May 2021 GCA_018472715.1_HG00735.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472715.1\ parent hprcChainNetViewnet off\ priority 52\ shortLabel HG00735.pat\ subGroups view=net sample=s052 population=amr subpop=pur hap=pat\ track netHprcGCA_018472715v1\ type netAlign GCA_018472715.1 chainHprcGCA_018472715v1\ wgEncodeRegDnaseUwPrecHotspot PrEC Ht bigBed 6 + PrEC prostate epithelium DNaseI Hotspots from ENCODE 0 162 85 226 255 170 240 255 1 0 0 regulation 1 color 85,226,255\ longLabel PrEC prostate epithelium DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel PrEC Ht\ subGroups view=b_Hot cellType=PrEC treatment=n_a tissue=prostate cancer=normal\ track wgEncodeRegDnaseUwPrecHotspot\ type bigBed 6 +\ encTfChipPkENCFF455ZLJ GM12878 POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in GM12878 from ENCODE 3 (ENCFF455ZLJ) 0 163 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in GM12878 from ENCODE 3 (ENCFF455ZLJ)\ parent encTfChipPk off\ shortLabel GM12878 POLR2A\ subGroups cellType=GM12878 factor=POLR2A\ track encTfChipPkENCFF455ZLJ\ wgEncodeRegDnaseUwHeepicHotspot HEEpiC Ht bigBed 6 + HEEpiC esophageal epithelium DNaseI Hotspots from ENCODE 0 163 85 220 255 170 237 255 1 0 0 regulation 1 color 85,220,255\ longLabel HEEpiC esophageal epithelium DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HEEpiC Ht\ subGroups view=b_Hot cellType=HEEpiC treatment=n_a tissue=esophagus cancer=normal\ track wgEncodeRegDnaseUwHeepicHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day10Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_forward 1 163 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep2.CNhs13722.13349-143E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13349-143E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day10Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_forward 0 163 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep2.CNhs13722.13349-143E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13349-143E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472725v1 HG01071.pat chain GCA_018472725.1 HG01071.pat HG01071.alt.pat.f1_v2 (May 2021 GCA_018472725.1_HG01071.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 163 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01071.pat HG01071.alt.pat.f1_v2 (May 2021 GCA_018472725.1_HG01071.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472725.1\ parent hprcChainNetViewchain off\ priority 53\ shortLabel HG01071.pat\ subGroups view=chain sample=s053 population=amr subpop=pur hap=pat\ track chainHprcGCA_018472725v1\ type chain GCA_018472725.1\ wgEncodeRegDnaseUwGm06990Hotspot GM06990 Ht bigBed 6 + GM06990 B-lymphocyte, lymphoblastoid cell line DNaseI Hotspots from ENCODE 0 164 85 205 255 170 230 255 1 0 0 regulation 1 color 85,205,255\ longLabel GM06990 B-lymphocyte, lymphoblastoid cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel GM06990 Ht\ subGroups view=b_Hot cellType=GM06990 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwGm06990Hotspot\ type bigBed 6 +\ encTfChipPkENCFF654EGO GM12878 RAD21 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in GM12878 from ENCODE 3 (ENCFF654EGO) 0 164 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of RAD21 in GM12878 from ENCODE 3 (ENCFF654EGO)\ parent encTfChipPk off\ shortLabel GM12878 RAD21\ subGroups cellType=GM12878 factor=RAD21\ track encTfChipPkENCFF654EGO\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_tpm_rev Hes3-gfpCardiomyocyticInduction_Day10Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_reverse 1 164 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep2.CNhs13722.13349-143E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13349-143E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_ctss_rev Hes3-gfpCardiomyocyticInduction_Day10Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_reverse 0 164 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep2.CNhs13722.13349-143E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13349-143E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1\ urlLabel FANTOM5 Details:\ netHprcGCA_018472725v1 HG01071.pat netAlign GCA_018472725.1 chainHprcGCA_018472725v1 HG01071.pat HG01071.alt.pat.f1_v2 (May 2021 GCA_018472725.1_HG01071.alt.pat.f1_v2) HPRC project computed Chain Nets 1 164 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01071.pat HG01071.alt.pat.f1_v2 (May 2021 GCA_018472725.1_HG01071.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472725.1\ parent hprcChainNetViewnet off\ priority 53\ shortLabel HG01071.pat\ subGroups view=net sample=s053 population=amr subpop=pur hap=pat\ track netHprcGCA_018472725v1\ type netAlign GCA_018472725.1 chainHprcGCA_018472725v1\ encTfChipPkENCFF996NBR GM12878 RAD51 narrowPeak Transcription Factor ChIP-seq Peaks of RAD51 in GM12878 from ENCODE 3 (ENCFF996NBR) 0 165 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of RAD51 in GM12878 from ENCODE 3 (ENCFF996NBR)\ parent encTfChipPk off\ shortLabel GM12878 RAD51\ subGroups cellType=GM12878 factor=RAD51\ track encTfChipPkENCFF996NBR\ wgEncodeRegDnaseUwHepg2Hotspot HepG2 Ht bigBed 6 + HepG2 hepatocellular carcinoma cell line DNaseI Hotspots from ENCODE 0 165 85 198 255 170 226 255 1 0 0 regulation 1 color 85,198,255\ longLabel HepG2 hepatocellular carcinoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot on\ shortLabel HepG2 Ht\ subGroups view=b_Hot cellType=HepG2 treatment=n_a tissue=liver cancer=cancer\ track wgEncodeRegDnaseUwHepg2Hotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day10Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_forward 1 165 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep3.CNhs13734.13361-143F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13361-143F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day10Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_forward 0 165 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep3.CNhs13734.13361-143F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13361-143F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4\ urlLabel FANTOM5 Details:\ chainHprcGCA_018504045v1 HG01243.pat chain GCA_018504045.1 HG01243.pat HG01243.alt.pat.f1_v2 (May 2021 GCA_018504045.1_HG01243.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 165 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01243.pat HG01243.alt.pat.f1_v2 (May 2021 GCA_018504045.1_HG01243.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504045.1\ parent hprcChainNetViewchain off\ priority 55\ shortLabel HG01243.pat\ subGroups view=chain sample=s055 population=amr subpop=pur hap=pat\ track chainHprcGCA_018504045v1\ type chain GCA_018504045.1\ wgEncodeRegDnaseUwCaco2Hotspot Caco-2 Ht bigBed 6 + Caco-2 colon adenocarcinoma cell line DNaseI Hotspots from ENCODE 0 166 85 193 255 170 224 255 1 0 0 regulation 1 color 85,193,255\ longLabel Caco-2 colon adenocarcinoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel Caco-2 Ht\ subGroups view=b_Hot cellType=Caco-2 treatment=n_a tissue=colon cancer=cancer\ track wgEncodeRegDnaseUwCaco2Hotspot\ type bigBed 6 +\ encTfChipPkENCFF034OSV GM12878 RB1 narrowPeak Transcription Factor ChIP-seq Peaks of RB1 in GM12878 from ENCODE 3 (ENCFF034OSV) 0 166 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of RB1 in GM12878 from ENCODE 3 (ENCFF034OSV)\ parent encTfChipPk off\ shortLabel GM12878 RB1\ subGroups cellType=GM12878 factor=RB1\ track encTfChipPkENCFF034OSV\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_tpm_rev Hes3-gfpCardiomyocyticInduction_Day10Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_reverse 1 166 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep3.CNhs13734.13361-143F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13361-143F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_ctss_rev Hes3-gfpCardiomyocyticInduction_Day10Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_reverse 0 166 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep3.CNhs13734.13361-143F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13361-143F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4\ urlLabel FANTOM5 Details:\ netHprcGCA_018504045v1 HG01243.pat netAlign GCA_018504045.1 chainHprcGCA_018504045v1 HG01243.pat HG01243.alt.pat.f1_v2 (May 2021 GCA_018504045.1_HG01243.alt.pat.f1_v2) HPRC project computed Chain Nets 1 166 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01243.pat HG01243.alt.pat.f1_v2 (May 2021 GCA_018504045.1_HG01243.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504045.1\ parent hprcChainNetViewnet off\ priority 55\ shortLabel HG01243.pat\ subGroups view=net sample=s055 population=amr subpop=pur hap=pat\ track netHprcGCA_018504045v1\ type netAlign GCA_018504045.1 chainHprcGCA_018504045v1\ encTfChipPkENCFF687SSY GM12878 RBBP5 narrowPeak Transcription Factor ChIP-seq Peaks of RBBP5 in GM12878 from ENCODE 3 (ENCFF687SSY) 0 167 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of RBBP5 in GM12878 from ENCODE 3 (ENCFF687SSY)\ parent encTfChipPk off\ shortLabel GM12878 RBBP5\ subGroups cellType=GM12878 factor=RBBP5\ track encTfChipPkENCFF687SSY\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day11Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_forward 1 167 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep1.CNhs13710.13338-143C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13338-143C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day11Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_forward 0 167 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep1.CNhs13710.13338-143C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13338-143C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8\ urlLabel FANTOM5 Details:\ chainHprcGCA_018504645v1 HG01109.pat chain GCA_018504645.1 HG01109.pat HG01109.alt.pat.f1_v2 (May 2021 GCA_018504645.1_HG01109.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 167 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01109.pat HG01109.alt.pat.f1_v2 (May 2021 GCA_018504645.1_HG01109.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504645.1\ parent hprcChainNetViewchain off\ priority 58\ shortLabel HG01109.pat\ subGroups view=chain sample=s058 population=amr subpop=pur hap=pat\ track chainHprcGCA_018504645v1\ type chain GCA_018504645.1\ wgEncodeRegDnaseUwSknshraHotspot SK-N-SH_RA Ht bigBed 6 + SK-N-SH_RA neuroblastoma cell line, RA treated DNaseI Hotspots from ENCODE 0 167 85 189 255 170 222 255 1 0 0 regulation 1 color 85,189,255\ longLabel SK-N-SH_RA neuroblastoma cell line, RA treated DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel SK-N-SH_RA Ht\ subGroups view=b_Hot cellType=SK-N-SH_RA treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwSknshraHotspot\ type bigBed 6 +\ wgEncodeRegDnaseUwCd20ro01778Hotspot CD20+_RO01778 Ht bigBed 6 + CD20+_RO01778 B-lymphocyte, CD20+ DNaseI Hotspots from ENCODE 0 168 85 183 255 170 219 255 1 0 0 regulation 1 color 85,183,255\ longLabel CD20+_RO01778 B-lymphocyte, CD20+ DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel CD20+_RO01778 Ht\ subGroups view=b_Hot cellType=CD20_RO01778 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwCd20ro01778Hotspot\ type bigBed 6 +\ encTfChipPkENCFF470ZMK GM12878 RCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of RCOR1 in GM12878 from ENCODE 3 (ENCFF470ZMK) 0 168 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of RCOR1 in GM12878 from ENCODE 3 (ENCFF470ZMK)\ parent encTfChipPk off\ shortLabel GM12878 RCOR1\ subGroups cellType=GM12878 factor=RCOR1\ track encTfChipPkENCFF470ZMK\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_tpm_rev Hes3-gfpCardiomyocyticInduction_Day11Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_reverse 1 168 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep1.CNhs13710.13338-143C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13338-143C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_ctss_rev Hes3-gfpCardiomyocyticInduction_Day11Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_reverse 0 168 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep1.CNhs13710.13338-143C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13338-143C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8\ urlLabel FANTOM5 Details:\ netHprcGCA_018504645v1 HG01109.pat netAlign GCA_018504645.1 chainHprcGCA_018504645v1 HG01109.pat HG01109.alt.pat.f1_v2 (May 2021 GCA_018504645.1_HG01109.alt.pat.f1_v2) HPRC project computed Chain Nets 1 168 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01109.pat HG01109.alt.pat.f1_v2 (May 2021 GCA_018504645.1_HG01109.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504645.1\ parent hprcChainNetViewnet off\ priority 58\ shortLabel HG01109.pat\ subGroups view=net sample=s058 population=amr subpop=pur hap=pat\ track netHprcGCA_018504645v1\ type netAlign GCA_018504645.1 chainHprcGCA_018504645v1\ encTfChipPkENCFF105YDI GM12878 RELB narrowPeak Transcription Factor ChIP-seq Peaks of RELB in GM12878 from ENCODE 3 (ENCFF105YDI) 0 169 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of RELB in GM12878 from ENCODE 3 (ENCFF105YDI)\ parent encTfChipPk off\ shortLabel GM12878 RELB\ subGroups cellType=GM12878 factor=RELB\ track encTfChipPkENCFF105YDI\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day11Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_forward 1 169 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep2.CNhs13723.13350-143E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13350-143E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day11Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_forward 0 169 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep2.CNhs13723.13350-143E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13350-143E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2\ urlLabel FANTOM5 Details:\ chainHprcGCA_018506955v1 HG00733.pat chain GCA_018506955.1 HG00733.pat HG00733.alt.pat.f1_v2 (May 2021 GCA_018506955.1_HG00733.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 169 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00733.pat HG00733.alt.pat.f1_v2 (May 2021 GCA_018506955.1_HG00733.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018506955.1\ parent hprcChainNetViewchain off\ priority 59\ shortLabel HG00733.pat\ subGroups view=chain sample=s059 population=amr subpop=pur hap=pat\ track chainHprcGCA_018506955v1\ type chain GCA_018506955.1\ wgEncodeRegDnaseUwTh1Hotspot Th1 Ht bigBed 6 + Th1 T-lymphocyte, helper type 1 DNaseI Hotspots from ENCODE 0 169 85 178 255 170 216 255 1 0 0 regulation 1 color 85,178,255\ longLabel Th1 T-lymphocyte, helper type 1 DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel Th1 Ht\ subGroups view=b_Hot cellType=Th1 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwTh1Hotspot\ type bigBed 6 +\ encTfChipPkENCFF313CII GM12878 REST narrowPeak Transcription Factor ChIP-seq Peaks of REST in GM12878 from ENCODE 3 (ENCFF313CII) 0 170 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of REST in GM12878 from ENCODE 3 (ENCFF313CII)\ parent encTfChipPk off\ shortLabel GM12878 REST\ subGroups cellType=GM12878 factor=REST\ track encTfChipPkENCFF313CII\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_tpm_rev Hes3-gfpCardiomyocyticInduction_Day11Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_reverse 1 170 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep2.CNhs13723.13350-143E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13350-143E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_ctss_rev Hes3-gfpCardiomyocyticInduction_Day11Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_reverse 0 170 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep2.CNhs13723.13350-143E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13350-143E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2\ urlLabel FANTOM5 Details:\ netHprcGCA_018506955v1 HG00733.pat netAlign GCA_018506955.1 chainHprcGCA_018506955v1 HG00733.pat HG00733.alt.pat.f1_v2 (May 2021 GCA_018506955.1_HG00733.alt.pat.f1_v2) HPRC project computed Chain Nets 1 170 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00733.pat HG00733.alt.pat.f1_v2 (May 2021 GCA_018506955.1_HG00733.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018506955.1\ parent hprcChainNetViewnet off\ priority 59\ shortLabel HG00733.pat\ subGroups view=net sample=s059 population=amr subpop=pur hap=pat\ track netHprcGCA_018506955v1\ type netAlign GCA_018506955.1 chainHprcGCA_018506955v1\ wgEncodeRegDnaseUwTh2Hotspot Th2 Ht bigBed 6 + Th2 T-lymphocyte, helper type 2 DNaseI Hotspots from ENCODE 0 170 85 176 255 170 215 255 1 0 0 regulation 1 color 85,176,255\ longLabel Th2 T-lymphocyte, helper type 2 DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel Th2 Ht\ subGroups view=b_Hot cellType=Th2 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwTh2Hotspot\ type bigBed 6 +\ encTfChipPkENCFF259LNG GM12878 RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in GM12878 from ENCODE 3 (ENCFF259LNG) 0 171 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of RFX5 in GM12878 from ENCODE 3 (ENCFF259LNG)\ parent encTfChipPk on\ shortLabel GM12878 RFX5\ subGroups cellType=GM12878 factor=RFX5\ track encTfChipPkENCFF259LNG\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day11Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_forward 1 171 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep3.CNhs13735.13362-143F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13362-143F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day11Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_forward 0 171 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep3.CNhs13735.13362-143F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13362-143F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5\ urlLabel FANTOM5 Details:\ chainHprcHs1 T2T-CHM13v2.0 chain hs1 T2T-CHM13v2.0 T2T-CHM13v2.0 (Jan. 2022 GCF_009914755.1_T2T-CHM13v2.0) HPRC project computed Chained Alignments 3 171 0 0 0 255 255 0 1 0 0 hprc 1 longLabel T2T-CHM13v2.0 T2T-CHM13v2.0 (Jan. 2022 GCF_009914755.1_T2T-CHM13v2.0) HPRC project computed Chained Alignments\ otherDb hs1\ parent hprcChainNetViewchain off\ priority 87\ shortLabel T2T-CHM13v2.0\ subGroups view=chain sample=s087 population=other subpop=t2t hap=pri\ track chainHprcHs1\ type chain hs1\ wgEncodeRegDnaseUwTh1wb54553204Hotspot Th1_Wb54553204 Ht bigBed 6 + Th1_Wb54553204 T-lymphocyte, helper type 1 DNaseI Hotspots from ENCODE 0 171 85 173 255 170 214 255 1 0 0 regulation 1 color 85,173,255\ longLabel Th1_Wb54553204 T-lymphocyte, helper type 1 DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel Th1_Wb54553204 Ht\ subGroups view=b_Hot cellType=Th1_Wb54553204 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwTh1wb54553204Hotspot\ type bigBed 6 +\ encTfChipPkENCFF677QUK GM12878 RUNX3 narrowPeak Transcription Factor ChIP-seq Peaks of RUNX3 in GM12878 from ENCODE 3 (ENCFF677QUK) 0 172 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of RUNX3 in GM12878 from ENCODE 3 (ENCFF677QUK)\ parent encTfChipPk off\ shortLabel GM12878 RUNX3\ subGroups cellType=GM12878 factor=RUNX3\ track encTfChipPkENCFF677QUK\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_tpm_rev Hes3-gfpCardiomyocyticInduction_Day11Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_reverse 1 172 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep3.CNhs13735.13362-143F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13362-143F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_ctss_rev Hes3-gfpCardiomyocyticInduction_Day11Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_reverse 0 172 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep3.CNhs13735.13362-143F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13362-143F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwJurkatHotspot Jurkat Ht bigBed 6 + Jurkat T-lymphocyte acute leukemia cell line DNaseI Hotspots from ENCODE 0 172 85 165 255 170 210 255 1 0 0 regulation 1 color 85,165,255\ longLabel Jurkat T-lymphocyte acute leukemia cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel Jurkat Ht\ subGroups view=b_Hot cellType=Jurkat treatment=n_a tissue=blood cancer=cancer\ track wgEncodeRegDnaseUwJurkatHotspot\ type bigBed 6 +\ netHprcHs1 T2T-CHM13v2.0 netAlign hs1 chainHprcHs1 T2T-CHM13v2.0 T2T-CHM13v2.0 (Jan. 2022 GCF_009914755.1_T2T-CHM13v2.0) HPRC project computed Chain Nets 1 172 0 0 0 255 255 0 0 0 0 hprc 0 longLabel T2T-CHM13v2.0 T2T-CHM13v2.0 (Jan. 2022 GCF_009914755.1_T2T-CHM13v2.0) HPRC project computed Chain Nets\ otherDb hs1\ parent hprcChainNetViewnet off\ priority 87\ shortLabel T2T-CHM13v2.0\ subGroups view=net sample=s087 population=other subpop=t2t hap=pri\ track netHprcHs1\ type netAlign hs1 chainHprcHs1\ wgEncodeRegDnaseUwGm12878Hotspot GM12878 Ht bigBed 6 + GM12878 B-lymphocyte, lymphoblastoid cell line DNaseI Hotspots from ENCODE 0 173 85 152 255 170 203 255 1 0 0 regulation 1 color 85,152,255\ longLabel GM12878 B-lymphocyte, lymphoblastoid cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot on\ shortLabel GM12878 Ht\ subGroups view=b_Hot cellType=GM12878 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwGm12878Hotspot\ type bigBed 6 +\ encTfChipPkENCFF313BDA GM12878 RXRA narrowPeak Transcription Factor ChIP-seq Peaks of RXRA in GM12878 from ENCODE 3 (ENCFF313BDA) 0 173 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of RXRA in GM12878 from ENCODE 3 (ENCFF313BDA)\ parent encTfChipPk off\ shortLabel GM12878 RXRA\ subGroups cellType=GM12878 factor=RXRA\ track encTfChipPkENCFF313BDA\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day12Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_forward 1 173 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep1.CNhs13711.13339-143C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13339-143C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day12Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_forward 0 173 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep1.CNhs13711.13339-143C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13339-143C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9\ urlLabel FANTOM5 Details:\ chainHprcGCA_018503255v1 NA18906.mat chain GCA_018503255.1 NA18906.mat NA18906.pri.mat.f1_v2 (May 2021 GCA_018503255.1_NA18906.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 173 0 0 0 255 255 0 1 0 0 hprc 1 longLabel NA18906.mat NA18906.pri.mat.f1_v2 (May 2021 GCA_018503255.1_NA18906.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018503255.1\ parent hprcChainNetViewchain off\ priority 39\ shortLabel NA18906.mat\ subGroups view=chain sample=s039 population=afr subpop=yri hap=mat\ track chainHprcGCA_018503255v1\ type chain GCA_018503255.1\ wgEncodeRegDnaseUwGm12865Hotspot GM12865 Ht bigBed 6 + GM12865 B-lymphocyte, lymphoblastoid cell line DNaseI Hotspots from ENCODE 0 174 85 147 255 170 201 255 1 0 0 regulation 1 color 85,147,255\ longLabel GM12865 B-lymphocyte, lymphoblastoid cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel GM12865 Ht\ subGroups view=b_Hot cellType=GM12865 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwGm12865Hotspot\ type bigBed 6 +\ encTfChipPkENCFF050CYK GM12878 SIN3A narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in GM12878 from ENCODE 3 (ENCFF050CYK) 0 174 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SIN3A in GM12878 from ENCODE 3 (ENCFF050CYK)\ parent encTfChipPk off\ shortLabel GM12878 SIN3A\ subGroups cellType=GM12878 factor=SIN3A\ track encTfChipPkENCFF050CYK\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_tpm_rev Hes3-gfpCardiomyocyticInduction_Day12Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_reverse 1 174 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep1.CNhs13711.13339-143C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13339-143C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_ctss_rev Hes3-gfpCardiomyocyticInduction_Day12Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_reverse 0 174 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep1.CNhs13711.13339-143C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13339-143C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9\ urlLabel FANTOM5 Details:\ netHprcGCA_018503255v1 NA18906.mat netAlign GCA_018503255.1 chainHprcGCA_018503255v1 NA18906.mat NA18906.pri.mat.f1_v2 (May 2021 GCA_018503255.1_NA18906.pri.mat.f1_v2) HPRC project computed Chain Nets 1 174 0 0 0 255 255 0 0 0 0 hprc 0 longLabel NA18906.mat NA18906.pri.mat.f1_v2 (May 2021 GCA_018503255.1_NA18906.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018503255.1\ parent hprcChainNetViewnet off\ priority 39\ shortLabel NA18906.mat\ subGroups view=net sample=s039 population=afr subpop=yri hap=mat\ track netHprcGCA_018503255v1\ type netAlign GCA_018503255.1 chainHprcGCA_018503255v1\ encTfChipPkENCFF864TFH GM12878 SIX5 narrowPeak Transcription Factor ChIP-seq Peaks of SIX5 in GM12878 from ENCODE 3 (ENCFF864TFH) 0 175 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SIX5 in GM12878 from ENCODE 3 (ENCFF864TFH)\ parent encTfChipPk off\ shortLabel GM12878 SIX5\ subGroups cellType=GM12878 factor=SIX5\ track encTfChipPkENCFF864TFH\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day12Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_forward 1 175 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep2.CNhs13724.13351-143E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13351-143E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day12Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_forward 0 175 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep2.CNhs13724.13351-143E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13351-143E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwMonocytescd14ro01746Hotspot Monocyte-CD14+ Ht bigBed 6 + Monocytes-CD14+_RO01746 monocyte, CD14+ DNaseI Hotspots from ENCODE 0 175 85 135 255 170 195 255 1 0 0 regulation 1 color 85,135,255\ longLabel Monocytes-CD14+_RO01746 monocyte, CD14+ DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel Monocyte-CD14+ Ht\ subGroups view=b_Hot cellType=Monocytes_CD14_RO01746 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwMonocytescd14ro01746Hotspot\ type bigBed 6 +\ chainHprcGCA_018503285v1 NA18906.pat chain GCA_018503285.1 NA18906.pat NA18906.alt.pat.f1_v2 (May 2021 GCA_018503285.1_NA18906.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 175 0 0 0 255 255 0 1 0 0 hprc 1 longLabel NA18906.pat NA18906.alt.pat.f1_v2 (May 2021 GCA_018503285.1_NA18906.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018503285.1\ parent hprcChainNetViewchain off\ priority 40\ shortLabel NA18906.pat\ subGroups view=chain sample=s040 population=afr subpop=yri hap=pat\ track chainHprcGCA_018503285v1\ type chain GCA_018503285.1\ encTfChipPkENCFF903KEI GM12878 SKIL narrowPeak Transcription Factor ChIP-seq Peaks of SKIL in GM12878 from ENCODE 3 (ENCFF903KEI) 0 176 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SKIL in GM12878 from ENCODE 3 (ENCFF903KEI)\ parent encTfChipPk off\ shortLabel GM12878 SKIL\ subGroups cellType=GM12878 factor=SKIL\ track encTfChipPkENCFF903KEI\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_tpm_rev Hes3-gfpCardiomyocyticInduction_Day12Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_reverse 1 176 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep2.CNhs13724.13351-143E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13351-143E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_ctss_rev Hes3-gfpCardiomyocyticInduction_Day12Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_reverse 0 176 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep2.CNhs13724.13351-143E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13351-143E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHl60Hotspot HL-60 Ht bigBed 6 + HL-60 acute promyelocytic leukemia (APL) cell line DNaseI Hotspots from ENCODE 0 176 85 124 255 170 189 255 1 0 0 regulation 1 color 85,124,255\ longLabel HL-60 acute promyelocytic leukemia (APL) cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HL-60 Ht\ subGroups view=b_Hot cellType=HL-60 treatment=n_a tissue=blood cancer=cancer\ track wgEncodeRegDnaseUwHl60Hotspot\ type bigBed 6 +\ netHprcGCA_018503285v1 NA18906.pat netAlign GCA_018503285.1 chainHprcGCA_018503285v1 NA18906.pat NA18906.alt.pat.f1_v2 (May 2021 GCA_018503285.1_NA18906.alt.pat.f1_v2) HPRC project computed Chain Nets 1 176 0 0 0 255 255 0 0 0 0 hprc 0 longLabel NA18906.pat NA18906.alt.pat.f1_v2 (May 2021 GCA_018503285.1_NA18906.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018503285.1\ parent hprcChainNetViewnet off\ priority 40\ shortLabel NA18906.pat\ subGroups view=net sample=s040 population=afr subpop=yri hap=pat\ track netHprcGCA_018503285v1\ type netAlign GCA_018503285.1 chainHprcGCA_018503285v1\ encTfChipPkENCFF987PGY GM12878 SMAD1 narrowPeak Transcription Factor ChIP-seq Peaks of SMAD1 in GM12878 from ENCODE 3 (ENCFF987PGY) 0 177 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SMAD1 in GM12878 from ENCODE 3 (ENCFF987PGY)\ parent encTfChipPk off\ shortLabel GM12878 SMAD1\ subGroups cellType=GM12878 factor=SMAD1\ track encTfChipPkENCFF987PGY\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day12Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_forward 1 177 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep3.CNhs13736.13363-143F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13363-143F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day12Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_forward 0 177 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep3.CNhs13736.13363-143F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13363-143F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwNb4Hotspot NB4 Ht bigBed 6 + NB4 acute promyelocytic leukemia (APL) cell line DNaseI Hotspots from ENCODE 0 177 85 112 255 170 183 255 1 0 0 regulation 1 color 85,112,255\ longLabel NB4 acute promyelocytic leukemia (APL) cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel NB4 Ht\ subGroups view=b_Hot cellType=NB4 treatment=n_a tissue=bone_marrow cancer=cancer\ track wgEncodeRegDnaseUwNb4Hotspot\ type bigBed 6 +\ encTfChipPkENCFF855SJG GM12878 SMAD5 narrowPeak Transcription Factor ChIP-seq Peaks of SMAD5 in GM12878 from ENCODE 3 (ENCFF855SJG) 0 178 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SMAD5 in GM12878 from ENCODE 3 (ENCFF855SJG)\ parent encTfChipPk off\ shortLabel GM12878 SMAD5\ subGroups cellType=GM12878 factor=SMAD5\ track encTfChipPkENCFF855SJG\ wgEncodeRegDnaseUwH7hescHotspot H7-ES Ht bigBed 6 + H7-hESC embryonic stem cell DNaseI Hotspots from ENCODE 0 178 85 93 255 170 174 255 1 0 0 regulation 1 color 85,93,255\ longLabel H7-hESC embryonic stem cell DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot on\ shortLabel H7-ES Ht\ subGroups view=b_Hot cellType=H7-hESC treatment=n_a tissue=embryo cancer=unknown\ track wgEncodeRegDnaseUwH7hescHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_tpm_rev Hes3-gfpCardiomyocyticInduction_Day12Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_reverse 1 178 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep3.CNhs13736.13363-143F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13363-143F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_ctss_rev Hes3-gfpCardiomyocyticInduction_Day12Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_reverse 0 178 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep3.CNhs13736.13363-143F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13363-143F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF052STI GM12878 SMARCA5 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA5 in GM12878 from ENCODE 3 (ENCFF052STI) 0 179 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SMARCA5 in GM12878 from ENCODE 3 (ENCFF052STI)\ parent encTfChipPk off\ shortLabel GM12878 SMARCA5\ subGroups cellType=GM12878 factor=SMARCA5\ track encTfChipPkENCFF052STI\ wgEncodeRegDnaseUwH7hescDiffprota5dHotspot H7-ES diff 5d Ht bigBed 6 + H7-hESC embryonic stem cell (diff 5d) DNaseI Hotspots from ENCODE 0 179 85 88 255 170 171 255 1 0 0 regulation 1 color 85,88,255\ longLabel H7-hESC embryonic stem cell (diff 5d) DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel H7-ES diff 5d Ht\ subGroups view=b_Hot cellType=H7-hESC treatment=diffProtA_5d tissue=embryo cancer=unknown\ track wgEncodeRegDnaseUwH7hescDiffprota5dHotspot\ type bigBed 6 +\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_tpm_fwd H9MelanocyticInduction_Day00Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_forward 1 179 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep1%20%28H9EB-1%20d0%29.CNhs12822.12627-134E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12627-134E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day00Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_ctss_fwd H9MelanocyticInduction_Day00Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_forward 0 179 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep1%20%28H9EB-1%20d0%29.CNhs12822.12627-134E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12627-134E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day00Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF572RPI GM12878 SMC3 narrowPeak Transcription Factor ChIP-seq Peaks of SMC3 in GM12878 from ENCODE 3 (ENCFF572RPI) 0 180 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SMC3 in GM12878 from ENCODE 3 (ENCFF572RPI)\ parent encTfChipPk off\ shortLabel GM12878 SMC3\ subGroups cellType=GM12878 factor=SMC3\ track encTfChipPkENCFF572RPI\ wgEncodeRegDnaseUwH7hescDiffprota14dHotspot H7-ES diff 14d Ht bigBed 6 + H7-hESC embryonic stem cell (diff 14d) DNaseI Hotspots from ENCODE 0 180 89 85 255 172 170 255 1 0 0 regulation 1 color 89,85,255\ longLabel H7-hESC embryonic stem cell (diff 14d) DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel H7-ES diff 14d Ht\ subGroups view=b_Hot cellType=H7-hESC treatment=diffProtA_14d tissue=embryo cancer=unknown\ track wgEncodeRegDnaseUwH7hescDiffprota14dHotspot\ type bigBed 6 +\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_tpm_rev H9MelanocyticInduction_Day00Br1- bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_reverse 1 180 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep1%20%28H9EB-1%20d0%29.CNhs12822.12627-134E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12627-134E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day00Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_ctss_rev H9MelanocyticInduction_Day00Br1- bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_reverse 0 180 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep1%20%28H9EB-1%20d0%29.CNhs12822.12627-134E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12627-134E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day00Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF766WWB GM12878 SRF 1 narrowPeak Transcription Factor ChIP-seq Peaks of SRF in GM12878 from ENCODE 3 (ENCFF766WWB) 0 181 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SRF in GM12878 from ENCODE 3 (ENCFF766WWB)\ parent encTfChipPk off\ shortLabel GM12878 SRF 1\ subGroups cellType=GM12878 factor=SRF\ track encTfChipPkENCFF766WWB\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_tpm_fwd H9MelanocyticInduction_Day00Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_forward 1 181 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep2%20%28H9EB-2%20d0%29.CNhs12825.12725-135G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12725-135G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day00Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_ctss_fwd H9MelanocyticInduction_Day00Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_forward 0 181 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep2%20%28H9EB-2%20d0%29.CNhs12825.12725-135G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12725-135G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day00Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwRptecHotspot RPTEC Ht bigBed 6 + RPTEC renal proximal tubule epithelium DNaseI Hotspots from ENCODE 0 181 100 85 255 177 170 255 1 0 0 regulation 1 color 100,85,255\ longLabel RPTEC renal proximal tubule epithelium DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel RPTEC Ht\ subGroups view=b_Hot cellType=RPTEC treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwRptecHotspot\ type bigBed 6 +\ encTfChipPkENCFF829SEJ GM12878 SRF 2 narrowPeak Transcription Factor ChIP-seq Peaks of SRF in GM12878 from ENCODE 3 (ENCFF829SEJ) 0 182 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SRF in GM12878 from ENCODE 3 (ENCFF829SEJ)\ parent encTfChipPk off\ shortLabel GM12878 SRF 2\ subGroups cellType=GM12878 factor=SRF\ track encTfChipPkENCFF829SEJ\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_tpm_rev H9MelanocyticInduction_Day00Br2- bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_reverse 1 182 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep2%20%28H9EB-2%20d0%29.CNhs12825.12725-135G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12725-135G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day00Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_ctss_rev H9MelanocyticInduction_Day00Br2- bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_reverse 0 182 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep2%20%28H9EB-2%20d0%29.CNhs12825.12725-135G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12725-135G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day00Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHrpepicHotspot HRPEpiC Ht bigBed 6 + HRPEpiC retinal pigment epithelium DNaseI Hotspots from ENCODE 0 182 124 85 255 189 170 255 1 0 0 regulation 1 color 124,85,255\ longLabel HRPEpiC retinal pigment epithelium DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HRPEpiC Ht\ subGroups view=b_Hot cellType=HRPEpiC treatment=n_a tissue=eye cancer=normal\ track wgEncodeRegDnaseUwHrpepicHotspot\ type bigBed 6 +\ encTfChipPkENCFF182IFE GM12878 SRF 3 narrowPeak Transcription Factor ChIP-seq Peaks of SRF in GM12878 from ENCODE 3 (ENCFF182IFE) 0 183 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SRF in GM12878 from ENCODE 3 (ENCFF182IFE)\ parent encTfChipPk off\ shortLabel GM12878 SRF 3\ subGroups cellType=GM12878 factor=SRF\ track encTfChipPkENCFF182IFE\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_tpm_fwd H9MelanocyticInduction_Day00Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_forward 1 183 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep3%20%28H9EB-3%20d0%29.CNhs12908.12823-136I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12823-136I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day00Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_ctss_fwd H9MelanocyticInduction_Day00Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_forward 0 183 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep3%20%28H9EB-3%20d0%29.CNhs12908.12823-136I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12823-136I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day00Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHmvecdlyadHotspot HMVEC-dLy-Ad Ht bigBed 6 + HMVEC-dLy-Ad dermal MV endothelial cell, lymph DNaseI Hotspots from ENCODE 0 183 133 85 255 194 170 255 1 0 0 regulation 1 color 133,85,255\ longLabel HMVEC-dLy-Ad dermal MV endothelial cell, lymph DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HMVEC-dLy-Ad Ht\ subGroups view=b_Hot cellType=HMVEC-dLy-Ad treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdlyadHotspot\ type bigBed 6 +\ encTfChipPkENCFF323QQU GM12878 STAT1 narrowPeak Transcription Factor ChIP-seq Peaks of STAT1 in GM12878 from ENCODE 3 (ENCFF323QQU) 0 184 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of STAT1 in GM12878 from ENCODE 3 (ENCFF323QQU)\ parent encTfChipPk on\ shortLabel GM12878 STAT1\ subGroups cellType=GM12878 factor=STAT1\ track encTfChipPkENCFF323QQU\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_tpm_rev H9MelanocyticInduction_Day00Br3- bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_reverse 1 184 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep3%20%28H9EB-3%20d0%29.CNhs12908.12823-136I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12823-136I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day00Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_ctss_rev H9MelanocyticInduction_Day00Br3- bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_reverse 0 184 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep3%20%28H9EB-3%20d0%29.CNhs12908.12823-136I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12823-136I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day00Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHelas3Hotspot HeLa-S3 Ht bigBed 6 + HeLa-S3 cervical epithelial adenocarcinoma cell line DNaseI Hotspots from ENCODE 0 184 157 85 255 206 170 255 1 0 0 regulation 1 color 157,85,255\ longLabel HeLa-S3 cervical epithelial adenocarcinoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot on\ shortLabel HeLa-S3 Ht\ subGroups view=b_Hot cellType=HeLa-S3 treatment=n_a tissue=cervix cancer=cancer\ track wgEncodeRegDnaseUwHelas3Hotspot\ type bigBed 6 +\ encTfChipPkENCFF923CHO GM12878 STAT3 narrowPeak Transcription Factor ChIP-seq Peaks of STAT3 in GM12878 from ENCODE 3 (ENCFF923CHO) 0 185 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of STAT3 in GM12878 from ENCODE 3 (ENCFF923CHO)\ parent encTfChipPk off\ shortLabel GM12878 STAT3\ subGroups cellType=GM12878 factor=STAT3\ track encTfChipPkENCFF923CHO\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_tpm_fwd H9MelanocyticInduction_Day01Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_forward 1 185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep1%20%28H9EB-1%20d1%29.CNhs12823.12628-134E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12628-134E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day01Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_ctss_fwd H9MelanocyticInduction_Day01Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_forward 0 185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep1%20%28H9EB-1%20d1%29.CNhs12823.12628-134E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12628-134E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day01Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwSknmcHotspot SK-N-MC Ht bigBed 6 + SK-N-MC neuroepithelioma cell line DNaseI Hotspots from ENCODE 0 185 176 85 255 215 170 255 1 0 0 regulation 1 color 176,85,255\ longLabel SK-N-MC neuroepithelioma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel SK-N-MC Ht\ subGroups view=b_Hot cellType=SK-N-MC treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwSknmcHotspot\ type bigBed 6 +\ encTfChipPkENCFF383YEA GM12878 STAT5A narrowPeak Transcription Factor ChIP-seq Peaks of STAT5A in GM12878 from ENCODE 3 (ENCFF383YEA) 0 186 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of STAT5A in GM12878 from ENCODE 3 (ENCFF383YEA)\ parent encTfChipPk off\ shortLabel GM12878 STAT5A\ subGroups cellType=GM12878 factor=STAT5A\ track encTfChipPkENCFF383YEA\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_tpm_rev H9MelanocyticInduction_Day01Br1- bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_reverse 1 186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep1%20%28H9EB-1%20d1%29.CNhs12823.12628-134E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12628-134E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day01Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_ctss_rev H9MelanocyticInduction_Day01Br1- bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_reverse 0 186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep1%20%28H9EB-1%20d1%29.CNhs12823.12628-134E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12628-134E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day01Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwMcf7Hotspot MCF-7 Ht bigBed 6 + MCF-7 mammary adenocarcinoma cell line DNaseI Hotspots from ENCODE 0 186 190 85 255 222 170 255 1 0 0 regulation 1 color 190,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel MCF-7 Ht\ subGroups view=b_Hot cellType=MCF-7 treatment=n_a tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwMcf7Hotspot\ type bigBed 6 +\ encTfChipPkENCFF069YVD GM12878 SUPT20H narrowPeak Transcription Factor ChIP-seq Peaks of SUPT20H in GM12878 from ENCODE 3 (ENCFF069YVD) 0 187 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SUPT20H in GM12878 from ENCODE 3 (ENCFF069YVD)\ parent encTfChipPk off\ shortLabel GM12878 SUPT20H\ subGroups cellType=GM12878 factor=SUPT20H\ track encTfChipPkENCFF069YVD\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_tpm_fwd H9MelanocyticInduction_Day01Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_forward 1 187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep2%20%28H9EB-2%20d1%29.CNhs12826.12726-135G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12726-135G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day01Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_ctss_fwd H9MelanocyticInduction_Day01Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_forward 0 187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep2%20%28H9EB-2%20d1%29.CNhs12826.12726-135G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12726-135G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day01Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwMcf7Estradiolctrl0hrHotspot MCF-7 estr 0h Ht bigBed 6 + MCF-7 mammary adenocarcinoma cell line (estradi 0h) DNaseI Hotspots from ENCODE 0 187 192 85 255 223 170 255 1 0 0 regulation 1 color 192,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line (estradi 0h) DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel MCF-7 estr 0h Ht\ subGroups view=b_Hot cellType=MCF-7 treatment=Estradiol_ctrl_0hr tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwMcf7Estradiolctrl0hrHotspot\ type bigBed 6 +\ encTfChipPkENCFF547FUI GM12878 SUZ12 narrowPeak Transcription Factor ChIP-seq Peaks of SUZ12 in GM12878 from ENCODE 3 (ENCFF547FUI) 0 188 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SUZ12 in GM12878 from ENCODE 3 (ENCFF547FUI)\ parent encTfChipPk off\ shortLabel GM12878 SUZ12\ subGroups cellType=GM12878 factor=SUZ12\ track encTfChipPkENCFF547FUI\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_tpm_rev H9MelanocyticInduction_Day01Br2- bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_reverse 1 188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep2%20%28H9EB-2%20d1%29.CNhs12826.12726-135G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12726-135G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day01Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_ctss_rev H9MelanocyticInduction_Day01Br2- bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_reverse 0 188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep2%20%28H9EB-2%20d1%29.CNhs12826.12726-135G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12726-135G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day01Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwMcf7Estradiol100nm1hrHotspot MCF-7 estr 1h Ht bigBed 6 + MCF-7 mammary adenocarcinoma cell line (estradi 1h) DNaseI Hotspots from ENCODE 0 188 192 85 255 223 170 255 1 0 0 regulation 1 color 192,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line (estradi 1h) DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel MCF-7 estr 1h Ht\ subGroups view=b_Hot cellType=MCF-7 treatment=Estradiol_100nM_1hr tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwMcf7Estradiol100nm1hrHotspot\ type bigBed 6 +\ encTfChipPkENCFF540AAP GM12878 TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in GM12878 from ENCODE 3 (ENCFF540AAP) 0 189 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of TAF1 in GM12878 from ENCODE 3 (ENCFF540AAP)\ parent encTfChipPk on\ shortLabel GM12878 TAF1\ subGroups cellType=GM12878 factor=TAF1\ track encTfChipPkENCFF540AAP\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_tpm_fwd H9MelanocyticInduction_Day01Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_forward 1 189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep3%20%28H9EB-3%20d1%29.CNhs12909.12824-136I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12824-136I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day01Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_ctss_fwd H9MelanocyticInduction_Day01Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_forward 0 189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep3%20%28H9EB-3%20d1%29.CNhs12909.12824-136I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12824-136I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day01Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwWerirb1Hotspot WERI-Rb-1 Ht bigBed 6 + WERI-Rb-1 retinoblastoma cell line DNaseI Hotspots from ENCODE 0 189 211 85 255 233 170 255 1 0 0 regulation 1 color 211,85,255\ longLabel WERI-Rb-1 retinoblastoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel WERI-Rb-1 Ht\ subGroups view=b_Hot cellType=WERI-Rb-1 treatment=n_a tissue=eye cancer=cancer\ track wgEncodeRegDnaseUwWerirb1Hotspot\ type bigBed 6 +\ wgEncodeRegDnaseUwBe2cHotspot BE2_C Ht bigBed 6 + BE2_C neuroblastoma cell line DNaseI Hotspots from ENCODE 0 190 237 85 255 246 170 255 1 0 0 regulation 1 color 237,85,255\ longLabel BE2_C neuroblastoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel BE2_C Ht\ subGroups view=b_Hot cellType=BE2_C treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwBe2cHotspot\ type bigBed 6 +\ encTfChipPkENCFF392JWA GM12878 TBL1XR1 narrowPeak Transcription Factor ChIP-seq Peaks of TBL1XR1 in GM12878 from ENCODE 3 (ENCFF392JWA) 0 190 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of TBL1XR1 in GM12878 from ENCODE 3 (ENCFF392JWA)\ parent encTfChipPk off\ shortLabel GM12878 TBL1XR1\ subGroups cellType=GM12878 factor=TBL1XR1\ track encTfChipPkENCFF392JWA\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_tpm_rev H9MelanocyticInduction_Day01Br3- bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_reverse 1 190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep3%20%28H9EB-3%20d1%29.CNhs12909.12824-136I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12824-136I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day01Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_ctss_rev H9MelanocyticInduction_Day01Br3- bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_reverse 0 190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep3%20%28H9EB-3%20d1%29.CNhs12909.12824-136I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12824-136I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day01Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF896UZB GM12878 TBP narrowPeak Transcription Factor ChIP-seq Peaks of TBP in GM12878 from ENCODE 3 (ENCFF896UZB) 0 191 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of TBP in GM12878 from ENCODE 3 (ENCFF896UZB)\ parent encTfChipPk off\ shortLabel GM12878 TBP\ subGroups cellType=GM12878 factor=TBP\ track encTfChipPkENCFF896UZB\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_tpm_fwd H9MelanocyticInduction_Day03Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_forward 1 191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep1%20%28H9EB-1%20d3%29.CNhs12895.12629-134F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12629-134F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day03Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_ctss_fwd H9MelanocyticInduction_Day03Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_forward 0 191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep1%20%28H9EB-1%20d3%29.CNhs12895.12629-134F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12629-134F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day03Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwK562Signal K562 Sg bigWig 0 38914.2 K562 lymphoblast chronic myeloid leukemia cell line DNaseI Signal from ENCODE 0 191 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel K562 lymphoblast chronic myeloid leukemia cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal on\ shortLabel K562 Sg\ subGroups view=c_Signal cellType=K562 treatment=n_a tissue=bone_marrow cancer=cancer\ track wgEncodeRegDnaseUwK562Signal\ type bigWig 0 38914.2\ wgEncodeRegDnaseUwA549Signal A549 Sg bigWig 0 30091.1 A549 lung adenocarcinoma cell line DNaseI Signal from ENCODE 0 192 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel A549 lung adenocarcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel A549 Sg\ subGroups view=c_Signal cellType=A549 treatment=n_a tissue=lung cancer=cancer\ track wgEncodeRegDnaseUwA549Signal\ type bigWig 0 30091.1\ encTfChipPkENCFF971VHK GM12878 TBX21 narrowPeak Transcription Factor ChIP-seq Peaks of TBX21 in GM12878 from ENCODE 3 (ENCFF971VHK) 0 192 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of TBX21 in GM12878 from ENCODE 3 (ENCFF971VHK)\ parent encTfChipPk off\ shortLabel GM12878 TBX21\ subGroups cellType=GM12878 factor=TBX21\ track encTfChipPkENCFF971VHK\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_tpm_rev H9MelanocyticInduction_Day03Br1- bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_reverse 1 192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep1%20%28H9EB-1%20d3%29.CNhs12895.12629-134F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12629-134F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day03Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_ctss_rev H9MelanocyticInduction_Day03Br1- bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_reverse 0 192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep1%20%28H9EB-1%20d3%29.CNhs12895.12629-134F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12629-134F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day03Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF768VSH GM12878 TCF12 1 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in GM12878 from ENCODE 3 (ENCFF768VSH) 0 193 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in GM12878 from ENCODE 3 (ENCFF768VSH)\ parent encTfChipPk off\ shortLabel GM12878 TCF12 1\ subGroups cellType=GM12878 factor=TCF12\ track encTfChipPkENCFF768VSH\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_tpm_fwd H9MelanocyticInduction_Day03Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_forward 1 193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep2%20%28H9EB-2%20d3%29.CNhs12827.12727-135G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12727-135G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day03Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_ctss_fwd H9MelanocyticInduction_Day03Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_forward 0 193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep2%20%28H9EB-2%20d3%29.CNhs12827.12727-135G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12727-135G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day03Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwLncapSignal LNCaP Sg bigWig 0 37372.7 LNCaP prostate adenocarcinoma cell line DNaseI Signal from ENCODE 0 193 255 102 85 255 178 170 0 0 0 regulation 1 color 255,102,85\ longLabel LNCaP prostate adenocarcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel LNCaP Sg\ subGroups view=c_Signal cellType=LNCaP treatment=n_a tissue=prostate cancer=cancer\ track wgEncodeRegDnaseUwLncapSignal\ type bigWig 0 37372.7\ encTfChipPkENCFF897RYA GM12878 TCF12 2 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in GM12878 from ENCODE 3 (ENCFF897RYA) 0 194 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in GM12878 from ENCODE 3 (ENCFF897RYA)\ parent encTfChipPk off\ shortLabel GM12878 TCF12 2\ subGroups cellType=GM12878 factor=TCF12\ track encTfChipPkENCFF897RYA\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_tpm_rev H9MelanocyticInduction_Day03Br2- bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_reverse 1 194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep2%20%28H9EB-2%20d3%29.CNhs12827.12727-135G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12727-135G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day03Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_ctss_rev H9MelanocyticInduction_Day03Br2- bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_reverse 0 194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep2%20%28H9EB-2%20d3%29.CNhs12827.12727-135G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12727-135G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day03Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHmecSignal HMEC Sg bigWig 0 32097.2 HMEC mammary epithelium DNaseI Signal from ENCODE 0 194 255 112 85 255 183 170 0 0 0 regulation 1 color 255,112,85\ longLabel HMEC mammary epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HMEC Sg\ subGroups view=c_Signal cellType=HMEC treatment=n_a tissue=breast cancer=normal\ track wgEncodeRegDnaseUwHmecSignal\ type bigWig 0 32097.2\ encTfChipPkENCFF152RNE GM12878 TCF7 narrowPeak Transcription Factor ChIP-seq Peaks of TCF7 in GM12878 from ENCODE 3 (ENCFF152RNE) 0 195 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of TCF7 in GM12878 from ENCODE 3 (ENCFF152RNE)\ parent encTfChipPk off\ shortLabel GM12878 TCF7\ subGroups cellType=GM12878 factor=TCF7\ track encTfChipPkENCFF152RNE\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_tpm_fwd H9MelanocyticInduction_Day03Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_forward 1 195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep3%20%28H9EB-3%20d3%29.CNhs12910.12825-136I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12825-136I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day03Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_ctss_fwd H9MelanocyticInduction_Day03Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_forward 0 195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep3%20%28H9EB-3%20d3%29.CNhs12910.12825-136I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12825-136I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day03Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwT47dSignal T-47D Sg bigWig 0 34214.8 T-47D mammary ductal carcinoma cell line DNaseI Signal from ENCODE 0 195 255 124 85 255 189 170 0 0 0 regulation 1 color 255,124,85\ longLabel T-47D mammary ductal carcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel T-47D Sg\ subGroups view=c_Signal cellType=T-47D treatment=n_a tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwT47dSignal\ type bigWig 0 34214.8\ encTfChipPkENCFF830TFU GM12878 TRIM22 1 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM22 in GM12878 from ENCODE 3 (ENCFF830TFU) 0 196 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of TRIM22 in GM12878 from ENCODE 3 (ENCFF830TFU)\ parent encTfChipPk on\ shortLabel GM12878 TRIM22 1\ subGroups cellType=GM12878 factor=TRIM22\ track encTfChipPkENCFF830TFU\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_tpm_rev H9MelanocyticInduction_Day03Br3- bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_reverse 1 196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep3%20%28H9EB-3%20d3%29.CNhs12910.12825-136I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12825-136I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day03Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_ctss_rev H9MelanocyticInduction_Day03Br3- bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_reverse 0 196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep3%20%28H9EB-3%20d3%29.CNhs12910.12825-136I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12825-136I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day03Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwPanc1Signal PANC-1 Sg bigWig 0 12279.3 PANC-1 pancreatic carcinoma cell line DNaseI Signal from ENCODE 0 196 255 141 85 255 198 170 0 0 0 regulation 1 color 255,141,85\ longLabel PANC-1 pancreatic carcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel PANC-1 Sg\ subGroups view=c_Signal cellType=PANC-1 treatment=n_a tissue=pancreas cancer=cancer\ track wgEncodeRegDnaseUwPanc1Signal\ type bigWig 0 12279.3\ encTfChipPkENCFF552WAH GM12878 TRIM22 2 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM22 in GM12878 from ENCODE 3 (ENCFF552WAH) 0 197 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of TRIM22 in GM12878 from ENCODE 3 (ENCFF552WAH)\ parent encTfChipPk off\ shortLabel GM12878 TRIM22 2\ subGroups cellType=GM12878 factor=TRIM22\ track encTfChipPkENCFF552WAH\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_tpm_fwd H9MelanocyticInduction_Day06Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_forward 1 197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep1%20%28H9EB-1%20d6%29.CNhs12896.12630-134F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12630-134F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day06Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_ctss_fwd H9MelanocyticInduction_Day06Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_forward 0 197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep1%20%28H9EB-1%20d6%29.CNhs12896.12630-134F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12630-134F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day06Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHct116Signal HCT-116 Sg bigWig 0 27405.3 HCT-116 colorectal carcinoma cell line DNaseI Signal from ENCODE 0 197 255 150 85 255 202 170 0 0 0 regulation 1 color 255,150,85\ longLabel HCT-116 colorectal carcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HCT-116 Sg\ subGroups view=c_Signal cellType=HCT-116 treatment=n_a tissue=colon cancer=cancer\ track wgEncodeRegDnaseUwHct116Signal\ type bigWig 0 27405.3\ encTfChipPkENCFF295ZLM GM12878 UBTF narrowPeak Transcription Factor ChIP-seq Peaks of UBTF in GM12878 from ENCODE 3 (ENCFF295ZLM) 0 198 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of UBTF in GM12878 from ENCODE 3 (ENCFF295ZLM)\ parent encTfChipPk off\ shortLabel GM12878 UBTF\ subGroups cellType=GM12878 factor=UBTF\ track encTfChipPkENCFF295ZLM\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_tpm_rev H9MelanocyticInduction_Day06Br1- bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_reverse 1 198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep1%20%28H9EB-1%20d6%29.CNhs12896.12630-134F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12630-134F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day06Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_ctss_rev H9MelanocyticInduction_Day06Br1- bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_reverse 0 198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep1%20%28H9EB-1%20d6%29.CNhs12896.12630-134F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12630-134F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day06Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwNhberaSignal NHBE_RA Sg bigWig 0 31238.7 NHBE_RA bronchial epithelium, RA treated DNaseI Signal from ENCODE 0 198 255 154 85 255 204 170 0 0 0 regulation 1 color 255,154,85\ longLabel NHBE_RA bronchial epithelium, RA treated DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel NHBE_RA Sg\ subGroups view=c_Signal cellType=NHBE_RA treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwNhberaSignal\ type bigWig 0 31238.7\ encTfChipPkENCFF514SWA GM12878 USF2 narrowPeak Transcription Factor ChIP-seq Peaks of USF2 in GM12878 from ENCODE 3 (ENCFF514SWA) 0 199 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of USF2 in GM12878 from ENCODE 3 (ENCFF514SWA)\ parent encTfChipPk off\ shortLabel GM12878 USF2\ subGroups cellType=GM12878 factor=USF2\ track encTfChipPkENCFF514SWA\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_tpm_fwd H9MelanocyticInduction_Day06Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_forward 1 199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep2%20%28H9EB-2%20d6%29.CNhs12828.12728-135H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12728-135H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day06Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_ctss_fwd H9MelanocyticInduction_Day06Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_forward 0 199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep2%20%28H9EB-2%20d6%29.CNhs12828.12728-135H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12728-135H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day06Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHffSignal HFF Sg bigWig 0 17635.9 HFF foreskin fibroblast DNaseI Signal from ENCODE 0 199 255 163 85 255 209 170 0 0 0 regulation 1 color 255,163,85\ longLabel HFF foreskin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HFF Sg\ subGroups view=c_Signal cellType=HFF treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwHffSignal\ type bigWig 0 17635.9\ encTfChipPkENCFF514DDI GM12878 WRNIP1 narrowPeak Transcription Factor ChIP-seq Peaks of WRNIP1 in GM12878 from ENCODE 3 (ENCFF514DDI) 0 200 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of WRNIP1 in GM12878 from ENCODE 3 (ENCFF514DDI)\ parent encTfChipPk off\ shortLabel GM12878 WRNIP1\ subGroups cellType=GM12878 factor=WRNIP1\ track encTfChipPkENCFF514DDI\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_tpm_rev H9MelanocyticInduction_Day06Br2- bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_reverse 1 200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep2%20%28H9EB-2%20d6%29.CNhs12828.12728-135H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12728-135H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day06Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_ctss_rev H9MelanocyticInduction_Day06Br2- bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_reverse 0 200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep2%20%28H9EB-2%20d6%29.CNhs12828.12728-135H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12728-135H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day06Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHffmycSignal HFF-Myc Sg bigWig 0 23416.2 HFF-Myc foreskin fibroblast cell line, cMyc DNaseI Signal from ENCODE 0 200 255 165 85 255 210 170 0 0 0 regulation 1 color 255,165,85\ longLabel HFF-Myc foreskin fibroblast cell line, cMyc DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HFF-Myc Sg\ subGroups view=c_Signal cellType=HFF-Myc treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwHffmycSignal\ type bigWig 0 23416.2\ encTfChipPkENCFF223MUF GM12878 YY1 1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in GM12878 from ENCODE 3 (ENCFF223MUF) 0 201 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in GM12878 from ENCODE 3 (ENCFF223MUF)\ parent encTfChipPk off\ shortLabel GM12878 YY1 1\ subGroups cellType=GM12878 factor=YY1\ track encTfChipPkENCFF223MUF\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_tpm_fwd H9MelanocyticInduction_Day06Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_forward 1 201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep3%20%28H9EB-3%20d6%29.CNhs12911.12826-136I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12826-136I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day06Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_ctss_fwd H9MelanocyticInduction_Day06Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_forward 0 201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep3%20%28H9EB-3%20d6%29.CNhs12911.12826-136I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12826-136I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day06Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwNt2d1Signal NT2-D1 Sg bigWig 0 8351.64 NT2-D1 embryonal carcinoma (NTera2) cell line DNaseI Signal from ENCODE 0 201 255 173 85 255 214 170 0 0 0 regulation 1 color 255,173,85\ longLabel NT2-D1 embryonal carcinoma (NTera2) cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel NT2-D1 Sg\ subGroups view=c_Signal cellType=NT2-D1 treatment=n_a tissue=testis cancer=cancer\ track wgEncodeRegDnaseUwNt2d1Signal\ type bigWig 0 8351.64\ wgEncodeRegDnaseUwBjSignal BJ Sg bigWig 0 28788.2 BJ foreskin fibroblast cell line DNaseI Signal from ENCODE 0 202 255 184 85 255 219 170 0 0 0 regulation 1 color 255,184,85\ longLabel BJ foreskin fibroblast cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel BJ Sg\ subGroups view=c_Signal cellType=BJ treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwBjSignal\ type bigWig 0 28788.2\ encTfChipPkENCFF752IXD GM12878 YY1 2 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in GM12878 from ENCODE 3 (ENCFF752IXD) 0 202 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in GM12878 from ENCODE 3 (ENCFF752IXD)\ parent encTfChipPk off\ shortLabel GM12878 YY1 2\ subGroups cellType=GM12878 factor=YY1\ track encTfChipPkENCFF752IXD\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_tpm_rev H9MelanocyticInduction_Day06Br3- bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_reverse 1 202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep3%20%28H9EB-3%20d6%29.CNhs12911.12826-136I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12826-136I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day06Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_ctss_rev H9MelanocyticInduction_Day06Br3- bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_reverse 0 202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep3%20%28H9EB-3%20d6%29.CNhs12911.12826-136I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12826-136I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day06Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwAg09309Signal AG09309 Sg bigWig 0 29145.4 AG09309 skin fibroblast DNaseI Signal from ENCODE 0 203 255 186 85 255 220 170 0 0 0 regulation 1 color 255,186,85\ longLabel AG09309 skin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel AG09309 Sg\ subGroups view=c_Signal cellType=AG09309 treatment=n_a tissue=skin cancer=unknown\ track wgEncodeRegDnaseUwAg09309Signal\ type bigWig 0 29145.4\ encTfChipPkENCFF630FLK GM12878 ZBED1 narrowPeak Transcription Factor ChIP-seq Peaks of ZBED1 in GM12878 from ENCODE 3 (ENCFF630FLK) 0 203 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBED1 in GM12878 from ENCODE 3 (ENCFF630FLK)\ parent encTfChipPk off\ shortLabel GM12878 ZBED1\ subGroups cellType=GM12878 factor=ZBED1\ track encTfChipPkENCFF630FLK\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_tpm_fwd H9MelanocyticInduction_Day09Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_forward 1 203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep1%20%28H9EB-1%20d9%29.CNhs12897.12631-134F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12631-134F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day09Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_ctss_fwd H9MelanocyticInduction_Day09Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_forward 0 203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep1%20%28H9EB-1%20d9%29.CNhs12897.12631-134F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12631-134F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day09Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF773OQL GM12878 ZBTB33 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in GM12878 from ENCODE 3 (ENCFF773OQL) 0 204 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in GM12878 from ENCODE 3 (ENCFF773OQL)\ parent encTfChipPk off\ shortLabel GM12878 ZBTB33 1\ subGroups cellType=GM12878 factor=ZBTB33\ track encTfChipPkENCFF773OQL\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_tpm_rev H9MelanocyticInduction_Day09Br1- bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_reverse 1 204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep1%20%28H9EB-1%20d9%29.CNhs12897.12631-134F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12631-134F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day09Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_ctss_rev H9MelanocyticInduction_Day09Br1- bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_reverse 0 204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep1%20%28H9EB-1%20d9%29.CNhs12897.12631-134F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12631-134F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day09Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHnpcepicSignal HNPCEpiC Sg bigWig 0 26522.6 HNPCEpiC non-pigmented ciliary epithelium (NPCEC) DNaseI Signal from ENCODE 0 204 255 188 85 255 221 170 0 0 0 regulation 1 color 255,188,85\ longLabel HNPCEpiC non-pigmented ciliary epithelium (NPCEC) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HNPCEpiC Sg\ subGroups view=c_Signal cellType=HNPCEpiC treatment=n_a tissue=eye cancer=normal\ track wgEncodeRegDnaseUwHnpcepicSignal\ type bigWig 0 26522.6\ encTfChipPkENCFF475DID GM12878 ZBTB33 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in GM12878 from ENCODE 3 (ENCFF475DID) 0 205 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in GM12878 from ENCODE 3 (ENCFF475DID)\ parent encTfChipPk off\ shortLabel GM12878 ZBTB33 2\ subGroups cellType=GM12878 factor=ZBTB33\ track encTfChipPkENCFF475DID\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_tpm_fwd H9MelanocyticInduction_Day09Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_forward 1 205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep2%20%28H9EB-2%20d9%29.CNhs12829.12729-135H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12729-135H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day09Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_ctss_fwd H9MelanocyticInduction_Day09Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_forward 0 205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep2%20%28H9EB-2%20d9%29.CNhs12829.12729-135H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12729-135H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day09Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwWi38Signal WI-38 Sg bigWig 0 21133.7 WI-38 embryonic lung fibroblast cell line DNaseI Signal from ENCODE 0 205 255 192 85 255 223 170 0 0 0 regulation 1 color 255,192,85\ longLabel WI-38 embryonic lung fibroblast cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel WI-38 Sg\ subGroups view=c_Signal cellType=WI-38 treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwWi38Signal\ type bigWig 0 21133.7\ wgEncodeRegDnaseUwGm04503Signal GM04503 Sg bigWig 0 11390.2 GM04503 skin fibroblast DNaseI Signal from ENCODE 0 206 255 200 85 255 227 170 0 0 0 regulation 1 color 255,200,85\ longLabel GM04503 skin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel GM04503 Sg\ subGroups view=c_Signal cellType=GM04503 treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwGm04503Signal\ type bigWig 0 11390.2\ encTfChipPkENCFF084IUW GM12878 ZBTB40 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB40 in GM12878 from ENCODE 3 (ENCFF084IUW) 0 206 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB40 in GM12878 from ENCODE 3 (ENCFF084IUW)\ parent encTfChipPk off\ shortLabel GM12878 ZBTB40\ subGroups cellType=GM12878 factor=ZBTB40\ track encTfChipPkENCFF084IUW\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_tpm_rev H9MelanocyticInduction_Day09Br2- bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_reverse 1 206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep2%20%28H9EB-2%20d9%29.CNhs12829.12729-135H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12729-135H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day09Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_ctss_rev H9MelanocyticInduction_Day09Br2- bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_reverse 0 206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep2%20%28H9EB-2%20d9%29.CNhs12829.12729-135H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12729-135H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day09Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwGm04504Signal GM04504 Sg bigWig 0 11566.9 GM04504 skin fibroblast DNaseI Signal from ENCODE 0 207 255 204 85 255 229 170 0 0 0 regulation 1 color 255,204,85\ longLabel GM04504 skin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel GM04504 Sg\ subGroups view=c_Signal cellType=GM04504 treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwGm04504Signal\ type bigWig 0 11566.9\ encTfChipPkENCFF153TQR GM12878 ZNF143 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF143 in GM12878 from ENCODE 3 (ENCFF153TQR) 0 207 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF143 in GM12878 from ENCODE 3 (ENCFF153TQR)\ parent encTfChipPk off\ shortLabel GM12878 ZNF143 1\ subGroups cellType=GM12878 factor=ZNF143\ track encTfChipPkENCFF153TQR\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_tpm_fwd H9MelanocyticInduction_Day09Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_forward 1 207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep3%20%28H9EB-3%20d9%29.CNhs12951.12827-137A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12827-137A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day09Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_ctss_fwd H9MelanocyticInduction_Day09Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_forward 0 207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep3%20%28H9EB-3%20d9%29.CNhs12951.12827-137A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12827-137A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day09Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF193POQ GM12878 ZNF143 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF143 in GM12878 from ENCODE 3 (ENCFF193POQ) 0 208 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF143 in GM12878 from ENCODE 3 (ENCFF193POQ)\ parent encTfChipPk off\ shortLabel GM12878 ZNF143 2\ subGroups cellType=GM12878 factor=ZNF143\ track encTfChipPkENCFF193POQ\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_tpm_rev H9MelanocyticInduction_Day09Br3- bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_reverse 1 208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep3%20%28H9EB-3%20d9%29.CNhs12951.12827-137A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12827-137A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day09Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_ctss_rev H9MelanocyticInduction_Day09Br3- bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_reverse 0 208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep3%20%28H9EB-3%20d9%29.CNhs12951.12827-137A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12827-137A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day09Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwNhlfSignal NHLF Sg bigWig 0 11719.1 NHLF lung fibroblast DNaseI Signal from ENCODE 0 208 255 209 85 255 232 170 0 0 0 regulation 1 color 255,209,85\ longLabel NHLF lung fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal on\ shortLabel NHLF Sg\ subGroups view=c_Signal cellType=NHLF treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwNhlfSignal\ type bigWig 0 11719.1\ encTfChipPkENCFF676BIG GM12878 ZNF207 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF207 in GM12878 from ENCODE 3 (ENCFF676BIG) 0 209 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF207 in GM12878 from ENCODE 3 (ENCFF676BIG)\ parent encTfChipPk off\ shortLabel GM12878 ZNF207\ subGroups cellType=GM12878 factor=ZNF207\ track encTfChipPkENCFF676BIG\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_tpm_fwd H9MelanocyticInduction_Day12Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_forward 1 209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12948.12632-134F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_ctss_fwd H9MelanocyticInduction_Day12Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_forward 0 209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12994.12632-134F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwNhaSignal NH-A Sg bigWig 0 9132.47 NH-A astrocyte DNaseI Signal from ENCODE 0 209 255 210 85 255 232 170 0 0 0 regulation 1 color 255,210,85\ longLabel NH-A astrocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel NH-A Sg\ subGroups view=c_Signal cellType=NH-A treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwNhaSignal\ type bigWig 0 9132.47\ encTfChipPkENCFF200SLC GM12878 ZNF217 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF217 in GM12878 from ENCODE 3 (ENCFF200SLC) 0 210 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF217 in GM12878 from ENCODE 3 (ENCFF200SLC)\ parent encTfChipPk off\ shortLabel GM12878 ZNF217\ subGroups cellType=GM12878 factor=ZNF217\ track encTfChipPkENCFF200SLC\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_tpm_fwd H9MelanocyticInduction_Day12Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_forward 1 210 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12994.12632-134F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_ctss_fwd H9MelanocyticInduction_Day12Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_forward 0 210 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12948.12632-134F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHbmecSignal HBMEC Sg bigWig 0 11394.7 HBMEC brain microvascular endothelial cell (MEC) DNaseI Signal from ENCODE 0 210 255 214 85 255 234 170 0 0 0 regulation 1 color 255,214,85\ longLabel HBMEC brain microvascular endothelial cell (MEC) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HBMEC Sg\ subGroups view=c_Signal cellType=HBMEC treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHbmecSignal\ type bigWig 0 11394.7\ wgEncodeRegDnaseUwAg09319Signal AG09319 Sg bigWig 0 28099 AG09319 gingival fibroblast DNaseI Signal from ENCODE 0 211 255 221 85 255 238 170 0 0 0 regulation 1 color 255,221,85\ longLabel AG09319 gingival fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel AG09319 Sg\ subGroups view=c_Signal cellType=AG09319 treatment=n_a tissue=periodontium cancer=normal\ track wgEncodeRegDnaseUwAg09319Signal\ type bigWig 0 28099\ encTfChipPkENCFF942MDT GM12878 ZNF384 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF384 in GM12878 from ENCODE 3 (ENCFF942MDT) 0 211 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF384 in GM12878 from ENCODE 3 (ENCFF942MDT)\ parent encTfChipPk off\ shortLabel GM12878 ZNF384\ subGroups cellType=GM12878 factor=ZNF384\ track encTfChipPkENCFF942MDT\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_tpm_rev H9MelanocyticInduction_Day12Br1- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_reverse 1 211 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12948.12632-134F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_ctss_rev H9MelanocyticInduction_Day12Br1- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_reverse 0 211 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12994.12632-134F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF615DTQ GM12878 ZNF592 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF592 in GM12878 from ENCODE 3 (ENCFF615DTQ) 0 212 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF592 in GM12878 from ENCODE 3 (ENCFF615DTQ)\ parent encTfChipPk off\ shortLabel GM12878 ZNF592\ subGroups cellType=GM12878 factor=ZNF592\ track encTfChipPkENCFF615DTQ\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_tpm_rev H9MelanocyticInduction_Day12Br1- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_reverse 1 212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12994.12632-134F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_ctss_rev H9MelanocyticInduction_Day12Br1- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_reverse 0 212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12948.12632-134F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHpdlfSignal HPdLF Sg bigWig 0 11009.1 HPdLF periodontal ligament fibroblast DNaseI Signal from ENCODE 0 212 255 224 85 255 239 170 0 0 0 regulation 1 color 255,224,85\ longLabel HPdLF periodontal ligament fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HPdLF Sg\ subGroups view=c_Signal cellType=HPdLF treatment=n_a tissue=periodontium cancer=normal\ track wgEncodeRegDnaseUwHpdlfSignal\ type bigWig 0 11009.1\ encTfChipPkENCFF137BRA GM12878 ZNF687 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF687 in GM12878 from ENCODE 3 (ENCFF137BRA) 0 213 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF687 in GM12878 from ENCODE 3 (ENCFF137BRA)\ parent encTfChipPk off\ shortLabel GM12878 ZNF687\ subGroups cellType=GM12878 factor=ZNF687\ track encTfChipPkENCFF137BRA\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_tpm_fwd H9MelanocyticInduction_Day12Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_forward 1 213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep2%20%28H9EB-2%20d12%29.CNhs12830.12730-135H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12730-135H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_ctss_fwd H9MelanocyticInduction_Day12Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_forward 0 213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep2%20%28H9EB-2%20d12%29.CNhs12830.12730-135H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12730-135H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHcfSignal HCF Sg bigWig 0 19295.8 HCF cardiac fibroblast DNaseI Signal from ENCODE 0 213 255 229 85 255 242 170 0 0 0 regulation 1 color 255,229,85\ longLabel HCF cardiac fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HCF Sg\ subGroups view=c_Signal cellType=HCF treatment=n_a tissue=heart cancer=normal\ track wgEncodeRegDnaseUwHcfSignal\ type bigWig 0 19295.8\ encTfChipPkENCFF214NJL GM12878 ZSCAN29 narrowPeak Transcription Factor ChIP-seq Peaks of ZSCAN29 in GM12878 from ENCODE 3 (ENCFF214NJL) 0 214 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZSCAN29 in GM12878 from ENCODE 3 (ENCFF214NJL)\ parent encTfChipPk off\ shortLabel GM12878 ZSCAN29\ subGroups cellType=GM12878 factor=ZSCAN29\ track encTfChipPkENCFF214NJL\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_tpm_rev H9MelanocyticInduction_Day12Br2- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_reverse 1 214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep2%20%28H9EB-2%20d12%29.CNhs12830.12730-135H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12730-135H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_ctss_rev H9MelanocyticInduction_Day12Br2- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_reverse 0 214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep2%20%28H9EB-2%20d12%29.CNhs12830.12730-135H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12730-135H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHcmSignal HCM Sg bigWig 0 14370.2 HCM cardiac myocyte DNaseI Signal from ENCODE 0 214 255 230 85 255 242 170 0 0 0 regulation 1 color 255,230,85\ longLabel HCM cardiac myocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HCM Sg\ subGroups view=c_Signal cellType=HCM treatment=n_a tissue=heart cancer=normal\ track wgEncodeRegDnaseUwHcmSignal\ type bigWig 0 14370.2\ encTfChipPkENCFF260NAX GM12878 ZZZ3 narrowPeak Transcription Factor ChIP-seq Peaks of ZZZ3 in GM12878 from ENCODE 3 (ENCFF260NAX) 0 215 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZZZ3 in GM12878 from ENCODE 3 (ENCFF260NAX)\ parent encTfChipPk off\ shortLabel GM12878 ZZZ3\ subGroups cellType=GM12878 factor=ZZZ3\ track encTfChipPkENCFF260NAX\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_tpm_fwd H9MelanocyticInduction_Day12Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_forward 1 215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12949.12828-137A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_ctss_fwd H9MelanocyticInduction_Day12Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_forward 0 215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12995.12828-137A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHpafSignal HPAF Sg bigWig 0 11225.6 HPAF pulmonary artery fibroblast DNaseI Signal from ENCODE 0 215 255 232 85 255 243 170 0 0 0 regulation 1 color 255,232,85\ longLabel HPAF pulmonary artery fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HPAF Sg\ subGroups view=c_Signal cellType=HPAF treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHpafSignal\ type bigWig 0 11225.6\ wgEncodeRegDnaseUwAoafSignal AoAF Sg bigWig 0 10369.5 AoAF aorta fibroblast DNaseI Signal from ENCODE 0 216 255 236 85 255 245 170 0 0 0 regulation 1 color 255,236,85\ longLabel AoAF aorta fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel AoAF Sg\ subGroups view=c_Signal cellType=AoAF treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwAoafSignal\ type bigWig 0 10369.5\ encTfChipPkENCFF987CQF GM12891 PAX5 narrowPeak Transcription Factor ChIP-seq Peaks of PAX5 in GM12891 from ENCODE 3 (ENCFF987CQF) 0 216 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of PAX5 in GM12891 from ENCODE 3 (ENCFF987CQF)\ parent encTfChipPk off\ shortLabel GM12891 PAX5\ subGroups cellType=GM12891 factor=PAX5\ track encTfChipPkENCFF987CQF\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_tpm_fwd H9MelanocyticInduction_Day12Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_forward 1 216 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12995.12828-137A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_ctss_fwd H9MelanocyticInduction_Day12Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_forward 0 216 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12949.12828-137A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF021HUZ GM12891 POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in GM12891 from ENCODE 3 (ENCFF021HUZ) 0 217 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in GM12891 from ENCODE 3 (ENCFF021HUZ)\ parent encTfChipPk off\ shortLabel GM12891 POLR2A\ subGroups cellType=GM12891 factor=POLR2A\ track encTfChipPkENCFF021HUZ\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_tpm_rev H9MelanocyticInduction_Day12Br3- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_reverse 1 217 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12949.12828-137A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_ctss_rev H9MelanocyticInduction_Day12Br3- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_reverse 0 217 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12995.12828-137A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHcpepicSignal HCPEpiC Sg bigWig 0 13163.5 HCPEpiC choroid plexus epithelium DNaseI Signal from ENCODE 0 217 255 242 85 255 248 170 0 0 0 regulation 1 color 255,242,85\ longLabel HCPEpiC choroid plexus epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HCPEpiC Sg\ subGroups view=c_Signal cellType=HCPEpiC treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwHcpepicSignal\ type bigWig 0 13163.5\ encTfChipPkENCFF113EFE GM12891 POU2F2 narrowPeak Transcription Factor ChIP-seq Peaks of POU2F2 in GM12891 from ENCODE 3 (ENCFF113EFE) 0 218 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POU2F2 in GM12891 from ENCODE 3 (ENCFF113EFE)\ parent encTfChipPk off\ shortLabel GM12891 POU2F2\ subGroups cellType=GM12891 factor=POU2F2\ track encTfChipPkENCFF113EFE\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_tpm_rev H9MelanocyticInduction_Day12Br3- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_reverse 1 218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12995.12828-137A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_ctss_rev H9MelanocyticInduction_Day12Br3- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_reverse 0 218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12949.12828-137A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHpfSignal HPF Sg bigWig 0 11172 HPF pulmonary fibroblast DNaseI Signal from ENCODE 0 218 255 247 85 255 251 170 0 0 0 regulation 1 color 255,247,85\ longLabel HPF pulmonary fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HPF Sg\ subGroups view=c_Signal cellType=HPF treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwHpfSignal\ type bigWig 0 11172\ encTfChipPkENCFF744AGB GM12891 SPI1 narrowPeak Transcription Factor ChIP-seq Peaks of SPI1 in GM12891 from ENCODE 3 (ENCFF744AGB) 0 219 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SPI1 in GM12891 from ENCODE 3 (ENCFF744AGB)\ parent encTfChipPk off\ shortLabel GM12891 SPI1\ subGroups cellType=GM12891 factor=SPI1\ track encTfChipPkENCFF744AGB\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_tpm_fwd H9MelanocyticInduction_Day15Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_forward 1 219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep1%20%28H9EB-1%20d15%29.CNhs12898.12633-134F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12633-134F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day15Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_ctss_fwd H9MelanocyticInduction_Day15Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_forward 0 219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep1%20%28H9EB-1%20d15%29.CNhs12898.12633-134F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12633-134F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day15Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHconfSignal HConF Sg bigWig 0 8320.98 HConF conjunctival fibroblast DNaseI Signal from ENCODE 0 219 255 252 85 255 253 170 0 0 0 regulation 1 color 255,252,85\ longLabel HConF conjunctival fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HConF Sg\ subGroups view=c_Signal cellType=HConF treatment=n_a tissue=eye cancer=unknown\ track wgEncodeRegDnaseUwHconfSignal\ type bigWig 0 8320.98\ encTfChipPkENCFF471NIK GM12891 TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in GM12891 from ENCODE 3 (ENCFF471NIK) 0 220 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TAF1 in GM12891 from ENCODE 3 (ENCFF471NIK)\ parent encTfChipPk off\ shortLabel GM12891 TAF1\ subGroups cellType=GM12891 factor=TAF1\ track encTfChipPkENCFF471NIK\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_tpm_rev H9MelanocyticInduction_Day15Br1- bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_reverse 1 220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep1%20%28H9EB-1%20d15%29.CNhs12898.12633-134F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12633-134F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day15Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_ctss_rev H9MelanocyticInduction_Day15Br1- bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_reverse 0 220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep1%20%28H9EB-1%20d15%29.CNhs12898.12633-134F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12633-134F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day15Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHacSignal HAc Sg bigWig 0 10000.7 HAc cerebellar astrocyte DNaseI Signal from ENCODE 0 220 250 255 85 252 255 170 0 0 0 regulation 1 color 250,255,85\ longLabel HAc cerebellar astrocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HAc Sg\ subGroups view=c_Signal cellType=HAc treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwHacSignal\ type bigWig 0 10000.7\ encTfChipPkENCFF538VYU GM12891 YY1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in GM12891 from ENCODE 3 (ENCFF538VYU) 0 221 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of YY1 in GM12891 from ENCODE 3 (ENCFF538VYU)\ parent encTfChipPk off\ shortLabel GM12891 YY1\ subGroups cellType=GM12891 factor=YY1\ track encTfChipPkENCFF538VYU\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_tpm_fwd H9MelanocyticInduction_Day15Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_forward 1 221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep2%20%28H9EB-2%20d15%29.CNhs12831.12731-135H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12731-135H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day15Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_ctss_fwd H9MelanocyticInduction_Day15Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_forward 0 221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep2%20%28H9EB-2%20d15%29.CNhs12831.12731-135H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12731-135H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day15Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHvmfSignal HVMF Sg bigWig 0 5956.46 HVMF villous mesenchymal fibroblast DNaseI Signal from ENCODE 0 221 242 255 85 248 255 170 0 0 0 regulation 1 color 242,255,85\ longLabel HVMF villous mesenchymal fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HVMF Sg\ subGroups view=c_Signal cellType=HVMF treatment=n_a tissue=placenta cancer=normal\ track wgEncodeRegDnaseUwHvmfSignal\ type bigWig 0 5956.46\ encTfChipPkENCFF403ZEO GM12892 POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in GM12892 from ENCODE 3 (ENCFF403ZEO) 0 222 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in GM12892 from ENCODE 3 (ENCFF403ZEO)\ parent encTfChipPk off\ shortLabel GM12892 POLR2A\ subGroups cellType=GM12892 factor=POLR2A\ track encTfChipPkENCFF403ZEO\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_tpm_rev H9MelanocyticInduction_Day15Br2- bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_reverse 1 222 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep2%20%28H9EB-2%20d15%29.CNhs12831.12731-135H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12731-135H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day15Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_ctss_rev H9MelanocyticInduction_Day15Br2- bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_reverse 0 222 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep2%20%28H9EB-2%20d15%29.CNhs12831.12731-135H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12731-135H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day15Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHipepicSignal HIPEpiC Sg bigWig 0 8028.81 HIPEpiC iris pigment epithelium DNaseI Signal from ENCODE 0 222 236 255 85 245 255 170 0 0 0 regulation 1 color 236,255,85\ longLabel HIPEpiC iris pigment epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HIPEpiC Sg\ subGroups view=c_Signal cellType=HIPEpiC treatment=n_a tissue=eye cancer=normal\ track wgEncodeRegDnaseUwHipepicSignal\ type bigWig 0 8028.81\ wgEncodeRegDnaseUwBonemarrowmscSignal bonemarrow_MSC Sg bigWig 0 3047.47 bone_marrow_MSC bone marrow fibroblastoid DNaseI Signal from ENCODE 0 223 228 255 85 241 255 170 0 0 0 regulation 1 color 228,255,85\ longLabel bone_marrow_MSC bone marrow fibroblastoid DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel bonemarrow_MSC Sg\ subGroups view=c_Signal cellType=bone_marrow_MSC treatment=n_a tissue=bone_marrow cancer=normal\ track wgEncodeRegDnaseUwBonemarrowmscSignal\ type bigWig 0 3047.47\ encTfChipPkENCFF033PLJ GM12892 TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in GM12892 from ENCODE 3 (ENCFF033PLJ) 0 223 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TAF1 in GM12892 from ENCODE 3 (ENCFF033PLJ)\ parent encTfChipPk off\ shortLabel GM12892 TAF1\ subGroups cellType=GM12892 factor=TAF1\ track encTfChipPkENCFF033PLJ\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_tpm_fwd H9MelanocyticInduction_Day15Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_forward 1 223 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep3%20%28H9EB-3%20d15%29.CNhs12912.12829-137A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12829-137A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day15Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_ctss_fwd H9MelanocyticInduction_Day15Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_forward 0 223 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep3%20%28H9EB-3%20d15%29.CNhs12912.12829-137A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12829-137A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day15Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwAg10803Signal AG10803 Sg bigWig 0 19440.9 AG10803 skin fibroblast DNaseI Signal from ENCODE 0 224 220 255 85 237 255 170 0 0 0 regulation 1 color 220,255,85\ longLabel AG10803 skin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel AG10803 Sg\ subGroups view=c_Signal cellType=AG10803 treatment=n_a tissue=skin cancer=unknown\ track wgEncodeRegDnaseUwAg10803Signal\ type bigWig 0 19440.9\ encTfChipPkENCFF072IHJ GM12892 YY1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in GM12892 from ENCODE 3 (ENCFF072IHJ) 0 224 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of YY1 in GM12892 from ENCODE 3 (ENCFF072IHJ)\ parent encTfChipPk off\ shortLabel GM12892 YY1\ subGroups cellType=GM12892 factor=YY1\ track encTfChipPkENCFF072IHJ\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_tpm_rev H9MelanocyticInduction_Day15Br3- bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_reverse 1 224 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep3%20%28H9EB-3%20d15%29.CNhs12912.12829-137A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12829-137A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day15Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_ctss_rev H9MelanocyticInduction_Day15Br3- bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_reverse 0 224 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep3%20%28H9EB-3%20d15%29.CNhs12912.12829-137A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12829-137A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day15Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF084FRB GM13977 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM13977 from ENCODE 3 (ENCFF084FRB) 0 225 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM13977 from ENCODE 3 (ENCFF084FRB)\ parent encTfChipPk off\ shortLabel GM13977 CTCF\ subGroups cellType=GM13977 factor=CTCF\ track encTfChipPkENCFF084FRB\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_tpm_fwd H9MelanocyticInduction_Day18Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_forward 1 225 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep1%20%28H9EB-1%20d18%29.CNhs12899.12634-134F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12634-134F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day18Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_ctss_fwd H9MelanocyticInduction_Day18Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_forward 0 225 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep1%20%28H9EB-1%20d18%29.CNhs12899.12634-134F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12634-134F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day18Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHmfSignal HMF Sg bigWig 0 12347.6 HMF mammary fibroblast DNaseI Signal from ENCODE 0 225 212 255 85 233 255 170 0 0 0 regulation 1 color 212,255,85\ longLabel HMF mammary fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HMF Sg\ subGroups view=c_Signal cellType=HMF treatment=n_a tissue=breast cancer=unknown\ track wgEncodeRegDnaseUwHmfSignal\ type bigWig 0 12347.6\ encTfChipPkENCFF419PTP GM20000 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM20000 from ENCODE 3 (ENCFF419PTP) 0 226 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM20000 from ENCODE 3 (ENCFF419PTP)\ parent encTfChipPk off\ shortLabel GM20000 CTCF\ subGroups cellType=GM20000 factor=CTCF\ track encTfChipPkENCFF419PTP\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_tpm_rev H9MelanocyticInduction_Day18Br1- bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_reverse 1 226 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep1%20%28H9EB-1%20d18%29.CNhs12899.12634-134F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12634-134F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day18Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_ctss_rev H9MelanocyticInduction_Day18Br1- bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_reverse 0 226 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep1%20%28H9EB-1%20d18%29.CNhs12899.12634-134F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12634-134F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day18Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHgfSignal HGF Sg bigWig 0 3410.39 HGF gingival fibroblast DNaseI Signal from ENCODE 0 226 204 255 85 229 255 170 0 0 0 regulation 1 color 204,255,85\ longLabel HGF gingival fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HGF Sg\ subGroups view=c_Signal cellType=HGF treatment=n_a tissue=periodontium cancer=normal\ track wgEncodeRegDnaseUwHgfSignal\ type bigWig 0 3410.39\ encTfChipPkENCFF976SAN GM23248 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in GM23248 from ENCODE 3 (ENCFF976SAN) 0 227 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in GM23248 from ENCODE 3 (ENCFF976SAN)\ parent encTfChipPk off\ shortLabel GM23248 EZH2\ subGroups cellType=GM23248 factor=EZH2\ track encTfChipPkENCFF976SAN\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_tpm_fwd H9MelanocyticInduction_Day18Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_forward 1 227 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep2%20%28H9EB-2%20d18%29.CNhs12832.12732-135H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12732-135H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day18Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_ctss_fwd H9MelanocyticInduction_Day18Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_forward 0 227 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep2%20%28H9EB-2%20d18%29.CNhs12832.12732-135H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12732-135H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day18Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwNhdfneoSignal NHDF-neo Sg bigWig 0 13455.2 NHDF-neo dermal fibroblast, neonate DNaseI Signal from ENCODE 0 227 198 255 85 226 255 170 0 0 0 regulation 1 color 198,255,85\ longLabel NHDF-neo dermal fibroblast, neonate DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel NHDF-neo Sg\ subGroups view=c_Signal cellType=NHDF-neo treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwNhdfneoSignal\ type bigWig 0 13455.2\ encTfChipPkENCFF322WKG GM23338 CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM23338 from ENCODE 3 (ENCFF322WKG) 0 228 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM23338 from ENCODE 3 (ENCFF322WKG)\ parent encTfChipPk off\ shortLabel GM23338 CTCF 1\ subGroups cellType=GM23338 factor=CTCF\ track encTfChipPkENCFF322WKG\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_tpm_rev H9MelanocyticInduction_Day18Br2- bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_reverse 1 228 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep2%20%28H9EB-2%20d18%29.CNhs12832.12732-135H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12732-135H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day18Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_ctss_rev H9MelanocyticInduction_Day18Br2- bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_reverse 0 228 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep2%20%28H9EB-2%20d18%29.CNhs12832.12732-135H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12732-135H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day18Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHaepicSignal HAEpiC Sg bigWig 0 10858.1 HAEpiC amniotic epithelium (AEC) DNaseI Signal from ENCODE 0 228 189 255 85 222 255 170 0 0 0 regulation 1 color 189,255,85\ longLabel HAEpiC amniotic epithelium (AEC) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HAEpiC Sg\ subGroups view=c_Signal cellType=HAEpiC treatment=n_a tissue=embryo cancer=normal\ track wgEncodeRegDnaseUwHaepicSignal\ type bigWig 0 10858.1\ encTfChipPkENCFF960XTR GM23338 CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM23338 from ENCODE 3 (ENCFF960XTR) 0 229 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM23338 from ENCODE 3 (ENCFF960XTR)\ parent encTfChipPk off\ shortLabel GM23338 CTCF 2\ subGroups cellType=GM23338 factor=CTCF\ track encTfChipPkENCFF960XTR\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_tpm_fwd H9MelanocyticInduction_Day18Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_forward 1 229 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep3%20%28H9EB-3%20d18%29.CNhs12914.12830-137A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12830-137A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day18Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_ctss_fwd H9MelanocyticInduction_Day18Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_forward 0 229 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep3%20%28H9EB-3%20d18%29.CNhs12914.12830-137A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12830-137A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day18Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwSkmcSignal SKMC Sg bigWig 0 2130.04 SKMC skeletal muscle cell DNaseI Signal from ENCODE 0 229 182 255 85 218 255 170 0 0 0 regulation 1 color 182,255,85\ longLabel SKMC skeletal muscle cell DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel SKMC Sg\ subGroups view=c_Signal cellType=SKMC treatment=n_a tissue=muscle cancer=normal\ track wgEncodeRegDnaseUwSkmcSignal\ type bigWig 0 2130.04\ encTfChipPkENCFF511AZU GM23338 ETS1 narrowPeak Transcription Factor ChIP-seq Peaks of ETS1 in GM23338 from ENCODE 3 (ENCFF511AZU) 0 230 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ETS1 in GM23338 from ENCODE 3 (ENCFF511AZU)\ parent encTfChipPk off\ shortLabel GM23338 ETS1\ subGroups cellType=GM23338 factor=ETS1\ track encTfChipPkENCFF511AZU\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_tpm_rev H9MelanocyticInduction_Day18Br3- bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_reverse 1 230 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep3%20%28H9EB-3%20d18%29.CNhs12914.12830-137A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12830-137A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day18Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_ctss_rev H9MelanocyticInduction_Day18Br3- bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_reverse 0 230 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep3%20%28H9EB-3%20d18%29.CNhs12914.12830-137A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12830-137A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day18Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHbvsmcSignal HBVSMC Sg bigWig 0 3766.42 HBVSMC brain vascular smooth muscle DNaseI Signal from ENCODE 0 230 176 255 85 215 255 170 0 0 0 regulation 1 color 176,255,85\ longLabel HBVSMC brain vascular smooth muscle DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HBVSMC Sg\ subGroups view=c_Signal cellType=HBVSMC treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHbvsmcSignal\ type bigWig 0 3766.42\ wgEncodeRegDnaseUwAg04449Signal AG04449 Sg bigWig 0 20132.8 AG04449 fetal skin fibroblast DNaseI Signal from ENCODE 0 231 152 255 85 203 255 170 0 0 0 regulation 1 color 152,255,85\ longLabel AG04449 fetal skin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel AG04449 Sg\ subGroups view=c_Signal cellType=AG04449 treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwAg04449Signal\ type bigWig 0 20132.8\ encTfChipPkENCFF097WNJ GM23338 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in GM23338 from ENCODE 3 (ENCFF097WNJ) 0 231 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in GM23338 from ENCODE 3 (ENCFF097WNJ)\ parent encTfChipPk off\ shortLabel GM23338 EZH2\ subGroups cellType=GM23338 factor=EZH2\ track encTfChipPkENCFF097WNJ\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_tpm_fwd H9MelanocyticInduction_Day21Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_forward 1 231 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep1%20%28H9EB-1%20d21%29.CNhs12900.12635-134F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12635-134F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day21Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_ctss_fwd H9MelanocyticInduction_Day21Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_forward 0 231 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep1%20%28H9EB-1%20d21%29.CNhs12900.12635-134F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12635-134F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day21Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwAg04450Signal AG04450 Sg bigWig 0 18229.7 AG04450 fetal lung fibroblast DNaseI Signal from ENCODE 0 232 144 255 85 199 255 170 0 0 0 regulation 1 color 144,255,85\ longLabel AG04450 fetal lung fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel AG04450 Sg\ subGroups view=c_Signal cellType=AG04450 treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwAg04450Signal\ type bigWig 0 18229.7\ encTfChipPkENCFF621PFM GM23338 NANOG narrowPeak Transcription Factor ChIP-seq Peaks of NANOG in GM23338 from ENCODE 3 (ENCFF621PFM) 0 232 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NANOG in GM23338 from ENCODE 3 (ENCFF621PFM)\ parent encTfChipPk off\ shortLabel GM23338 NANOG\ subGroups cellType=GM23338 factor=NANOG\ track encTfChipPkENCFF621PFM\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_tpm_rev H9MelanocyticInduction_Day21Br1- bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_reverse 1 232 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep1%20%28H9EB-1%20d21%29.CNhs12900.12635-134F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12635-134F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day21Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_ctss_rev H9MelanocyticInduction_Day21Br1- bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_reverse 0 232 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep1%20%28H9EB-1%20d21%29.CNhs12900.12635-134F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12635-134F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day21Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF904USP GM23338 REST narrowPeak Transcription Factor ChIP-seq Peaks of REST in GM23338 from ENCODE 3 (ENCFF904USP) 0 233 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of REST in GM23338 from ENCODE 3 (ENCFF904USP)\ parent encTfChipPk off\ shortLabel GM23338 REST\ subGroups cellType=GM23338 factor=REST\ track encTfChipPkENCFF904USP\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_tpm_fwd H9MelanocyticInduction_Day21Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_forward 1 233 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep2%20%28H9EB-2%20d21%29.CNhs12833.12733-135H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12733-135H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day21Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_ctss_fwd H9MelanocyticInduction_Day21Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_forward 0 233 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep2%20%28H9EB-2%20d21%29.CNhs12833.12733-135H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12733-135H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day21Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHahSignal HA-h Sg bigWig 0 10262.5 HA-h hippocampal astrocyte DNaseI Signal from ENCODE 0 233 122 255 85 188 255 170 0 0 0 regulation 1 color 122,255,85\ longLabel HA-h hippocampal astrocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HA-h Sg\ subGroups view=c_Signal cellType=HA-h treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwHahSignal\ type bigWig 0 10262.5\ encTfChipPkENCFF777DCR H1-hESC ASH2L narrowPeak Transcription Factor ChIP-seq Peaks of ASH2L in H1-hESC from ENCODE 3 (ENCFF777DCR) 0 234 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ASH2L in H1-hESC from ENCODE 3 (ENCFF777DCR)\ parent encTfChipPk off\ shortLabel H1-hESC ASH2L\ subGroups cellType=H1-hESC factor=ASH2L\ track encTfChipPkENCFF777DCR\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_tpm_rev H9MelanocyticInduction_Day21Br2- bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_reverse 1 234 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep2%20%28H9EB-2%20d21%29.CNhs12833.12733-135H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12733-135H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day21Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_ctss_rev H9MelanocyticInduction_Day21Br2- bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_reverse 0 234 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep2%20%28H9EB-2%20d21%29.CNhs12833.12733-135H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12733-135H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day21Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwM059jSignal M059J Sg bigWig 0 6527.58 M059J glioblastoma cell line DNaseI Signal from ENCODE 0 234 96 255 85 175 255 170 0 0 0 regulation 1 color 96,255,85\ longLabel M059J glioblastoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel M059J Sg\ subGroups view=c_Signal cellType=M059J treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwM059jSignal\ type bigWig 0 6527.58\ encTfChipPkENCFF487GLV H1-hESC ATF3 narrowPeak Transcription Factor ChIP-seq Peaks of ATF3 in H1-hESC from ENCODE 3 (ENCFF487GLV) 0 235 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ATF3 in H1-hESC from ENCODE 3 (ENCFF487GLV)\ parent encTfChipPk off\ shortLabel H1-hESC ATF3\ subGroups cellType=H1-hESC factor=ATF3\ track encTfChipPkENCFF487GLV\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_tpm_fwd H9MelanocyticInduction_Day21Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_forward 1 235 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep3%20%28H9EB-3%20d21%29.CNhs12915.12831-137A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12831-137A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day21Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_ctss_fwd H9MelanocyticInduction_Day21Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_forward 0 235 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep3%20%28H9EB-3%20d21%29.CNhs12915.12831-137A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12831-137A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day21Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwRpmi7951Signal RPMI-7951 Sg bigWig 0 7339.21 RPMI-7951 melanoma cell line DNaseI Signal from ENCODE 0 235 85 255 90 170 255 172 0 0 0 regulation 1 color 85,255,90\ longLabel RPMI-7951 melanoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel RPMI-7951 Sg\ subGroups view=c_Signal cellType=RPMI-7951 treatment=n_a tissue=skin cancer=cancer\ track wgEncodeRegDnaseUwRpmi7951Signal\ type bigWig 0 7339.21\ encTfChipPkENCFF851YHG H1-hESC BACH1 narrowPeak Transcription Factor ChIP-seq Peaks of BACH1 in H1-hESC from ENCODE 3 (ENCFF851YHG) 0 236 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of BACH1 in H1-hESC from ENCODE 3 (ENCFF851YHG)\ parent encTfChipPk off\ shortLabel H1-hESC BACH1\ subGroups cellType=H1-hESC factor=BACH1\ track encTfChipPkENCFF851YHG\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_tpm_rev H9MelanocyticInduction_Day21Br3- bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_reverse 1 236 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep3%20%28H9EB-3%20d21%29.CNhs12915.12831-137A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12831-137A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day21Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_ctss_rev H9MelanocyticInduction_Day21Br3- bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_reverse 0 236 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep3%20%28H9EB-3%20d21%29.CNhs12915.12831-137A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12831-137A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day21Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHaspSignal HA-sp Sg bigWig 0 8189.49 HA-sp spinal cord astrocyte DNaseI Signal from ENCODE 0 236 85 255 124 170 255 189 0 0 0 regulation 1 color 85,255,124\ longLabel HA-sp spinal cord astrocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HA-sp Sg\ subGroups view=c_Signal cellType=HA-sp treatment=n_a tissue=spinal_cord cancer=normal\ track wgEncodeRegDnaseUwHaspSignal\ type bigWig 0 8189.49\ encTfChipPkENCFF533KIC H1-hESC BCL11A 1 narrowPeak Transcription Factor ChIP-seq Peaks of BCL11A in H1-hESC from ENCODE 3 (ENCFF533KIC) 0 237 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of BCL11A in H1-hESC from ENCODE 3 (ENCFF533KIC)\ parent encTfChipPk off\ shortLabel H1-hESC BCL11A 1\ subGroups cellType=H1-hESC factor=BCL11A\ track encTfChipPkENCFF533KIC\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_tpm_fwd H9MelanocyticInduction_Day24Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_forward 1 237 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep1%20%28H9EB-1%20d24%29.CNhs12901.12636-134F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12636-134F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day24Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_ctss_fwd H9MelanocyticInduction_Day24Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_forward 0 237 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep1%20%28H9EB-1%20d24%29.CNhs12901.12636-134F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12636-134F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day24Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHcfaaSignal HCFaa Sg bigWig 0 3845.33 HCFaa cardiac fibroblast DNaseI Signal from ENCODE 0 237 85 255 150 170 255 202 0 0 0 regulation 1 color 85,255,150\ longLabel HCFaa cardiac fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HCFaa Sg\ subGroups view=c_Signal cellType=HCFaa treatment=n_a tissue=heart cancer=normal\ track wgEncodeRegDnaseUwHcfaaSignal\ type bigWig 0 3845.33\ encTfChipPkENCFF087VWX H1-hESC BCL11A 2 narrowPeak Transcription Factor ChIP-seq Peaks of BCL11A in H1-hESC from ENCODE 3 (ENCFF087VWX) 0 238 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of BCL11A in H1-hESC from ENCODE 3 (ENCFF087VWX)\ parent encTfChipPk off\ shortLabel H1-hESC BCL11A 2\ subGroups cellType=H1-hESC factor=BCL11A\ track encTfChipPkENCFF087VWX\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_tpm_rev H9MelanocyticInduction_Day24Br1- bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_reverse 1 238 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep1%20%28H9EB-1%20d24%29.CNhs12901.12636-134F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12636-134F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day24Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_ctss_rev H9MelanocyticInduction_Day24Br1- bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_reverse 0 238 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep1%20%28H9EB-1%20d24%29.CNhs12901.12636-134F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12636-134F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day24Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwWi384ohtam20nm72hrSignal WI-38 40HTAM Sg bigWig 0 9068.99 WI-38 embryonic lung fibroblast cell line (40HTAM) DNaseI Signal from ENCODE 0 238 85 255 171 170 255 213 0 0 0 regulation 1 color 85,255,171\ longLabel WI-38 embryonic lung fibroblast cell line (40HTAM) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel WI-38 40HTAM Sg\ subGroups view=c_Signal cellType=WI-38 treatment=OHTAM_20nM_72hr tissue=lung cancer=normal\ track wgEncodeRegDnaseUwWi384ohtam20nm72hrSignal\ type bigWig 0 9068.99\ encTfChipPkENCFF962YTC H1-hESC BRCA1 narrowPeak Transcription Factor ChIP-seq Peaks of BRCA1 in H1-hESC from ENCODE 3 (ENCFF962YTC) 0 239 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of BRCA1 in H1-hESC from ENCODE 3 (ENCFF962YTC)\ parent encTfChipPk off\ shortLabel H1-hESC BRCA1\ subGroups cellType=H1-hESC factor=BRCA1\ track encTfChipPkENCFF962YTC\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_tpm_fwd H9MelanocyticInduction_Day24Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_forward 1 239 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep2%20%28H9EB-2%20d24%29.CNhs12834.12734-135H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12734-135H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day24Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_ctss_fwd H9MelanocyticInduction_Day24Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_forward 0 239 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep2%20%28H9EB-2%20d24%29.CNhs12834.12734-135H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12734-135H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day24Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwNhdfadSignal NHDF-Ad Sg bigWig 0 2200.64 NHDF-Ad dermal fibroblast DNaseI Signal from ENCODE 0 239 85 255 180 170 255 217 0 0 0 regulation 1 color 85,255,180\ longLabel NHDF-Ad dermal fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel NHDF-Ad Sg\ subGroups view=c_Signal cellType=NHDF-Ad treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwNhdfadSignal\ type bigWig 0 2200.64\ encTfChipPkENCFF549ODQ H1-hESC CHD1 1 narrowPeak Transcription Factor ChIP-seq Peaks of CHD1 in H1-hESC from ENCODE 3 (ENCFF549ODQ) 0 240 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CHD1 in H1-hESC from ENCODE 3 (ENCFF549ODQ)\ parent encTfChipPk off\ shortLabel H1-hESC CHD1 1\ subGroups cellType=H1-hESC factor=CHD1\ track encTfChipPkENCFF549ODQ\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_tpm_rev H9MelanocyticInduction_Day24Br2- bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_reverse 1 240 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep2%20%28H9EB-2%20d24%29.CNhs12834.12734-135H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12734-135H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day24Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_ctss_rev H9MelanocyticInduction_Day24Br2- bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_reverse 0 240 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep2%20%28H9EB-2%20d24%29.CNhs12834.12734-135H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12734-135H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day24Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHsmmSignal HSMM Sg bigWig 0 14177.3 HSMM skeletal muscle myoblast DNaseI Signal from ENCODE 0 240 85 255 190 170 255 222 0 0 0 regulation 1 color 85,255,190\ longLabel HSMM skeletal muscle myoblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal on\ shortLabel HSMM Sg\ subGroups view=c_Signal cellType=HSMM treatment=n_a tissue=muscle cancer=normal\ track wgEncodeRegDnaseUwHsmmSignal\ type bigWig 0 14177.3\ encTfChipPkENCFF806HXY H1-hESC CHD1 2 narrowPeak Transcription Factor ChIP-seq Peaks of CHD1 in H1-hESC from ENCODE 3 (ENCFF806HXY) 0 241 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CHD1 in H1-hESC from ENCODE 3 (ENCFF806HXY)\ parent encTfChipPk off\ shortLabel H1-hESC CHD1 2\ subGroups cellType=H1-hESC factor=CHD1\ track encTfChipPkENCFF806HXY\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_tpm_fwd H9MelanocyticInduction_Day24Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_forward 1 241 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep3%20%28H9EB-3%20d24%29.CNhs12916.12832-137A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12832-137A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day24Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_ctss_fwd H9MelanocyticInduction_Day24Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_forward 0 241 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep3%20%28H9EB-3%20d24%29.CNhs12916.12832-137A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12832-137A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day24Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwLhcnm2Signal LHCN-M2 Sg bigWig 0 16877.8 LHCN-M2 skeletal myoblast DNaseI Signal from ENCODE 0 241 85 255 193 170 255 224 0 0 0 regulation 1 color 85,255,193\ longLabel LHCN-M2 skeletal myoblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel LHCN-M2 Sg\ subGroups view=c_Signal cellType=LHCN-M2 treatment=n_a tissue=muscle cancer=unknown\ track wgEncodeRegDnaseUwLhcnm2Signal\ type bigWig 0 16877.8\ encTfChipPkENCFF658SXI H1-hESC CHD7 narrowPeak Transcription Factor ChIP-seq Peaks of CHD7 in H1-hESC from ENCODE 3 (ENCFF658SXI) 0 242 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CHD7 in H1-hESC from ENCODE 3 (ENCFF658SXI)\ parent encTfChipPk off\ shortLabel H1-hESC CHD7\ subGroups cellType=H1-hESC factor=CHD7\ track encTfChipPkENCFF658SXI\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_tpm_rev H9MelanocyticInduction_Day24Br3- bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_reverse 1 242 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep3%20%28H9EB-3%20d24%29.CNhs12916.12832-137A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12832-137A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day24Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_ctss_rev H9MelanocyticInduction_Day24Br3- bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_reverse 0 242 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep3%20%28H9EB-3%20d24%29.CNhs12916.12832-137A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12832-137A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day24Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwLhcnm2Diff4dSignal LHCN-M2 diff4d Sg bigWig 0 44051.9 LHCN-M2 skeletal myoblast (diff 4d) DNaseI Signal from ENCODE 0 242 85 255 198 170 255 226 0 0 0 regulation 1 color 85,255,198\ longLabel LHCN-M2 skeletal myoblast (diff 4d) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel LHCN-M2 diff4d Sg\ subGroups view=c_Signal cellType=LHCN-M2 treatment=DIFF_4d tissue=muscle cancer=unknown\ track wgEncodeRegDnaseUwLhcnm2Diff4dSignal\ type bigWig 0 44051.9\ encTfChipPkENCFF368LWM H1-hESC CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in H1-hESC from ENCODE 3 (ENCFF368LWM) 0 243 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in H1-hESC from ENCODE 3 (ENCFF368LWM)\ parent encTfChipPk on\ shortLabel H1-hESC CTCF 1\ subGroups cellType=H1-hESC factor=CTCF\ track encTfChipPkENCFF368LWM\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_tpm_fwd H9MelanocyticInduction_Day27Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_forward 1 243 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep1%20%28H9EB-1%20d27%29.CNhs12902.12637-134F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12637-134F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day27Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_ctss_fwd H9MelanocyticInduction_Day27Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_forward 0 243 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep1%20%28H9EB-1%20d27%29.CNhs12902.12637-134F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12637-134F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day27Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHsmmtubeSignal HSMMtube Sg bigWig 0 14719.7 HSMMtube skeletal muscle myotube DNaseI Signal from ENCODE 0 243 85 255 204 170 255 229 0 0 0 regulation 1 color 85,255,204\ longLabel HSMMtube skeletal muscle myotube DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HSMMtube Sg\ subGroups view=c_Signal cellType=HSMMtube treatment=n_a tissue=muscle cancer=normal\ track wgEncodeRegDnaseUwHsmmtubeSignal\ type bigWig 0 14719.7\ encTfChipPkENCFF821AQO H1-hESC CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in H1-hESC from ENCODE 3 (ENCFF821AQO) 0 244 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in H1-hESC from ENCODE 3 (ENCFF821AQO)\ parent encTfChipPk off\ shortLabel H1-hESC CTCF 2\ subGroups cellType=H1-hESC factor=CTCF\ track encTfChipPkENCFF821AQO\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_tpm_rev H9MelanocyticInduction_Day27Br1- bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_reverse 1 244 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep1%20%28H9EB-1%20d27%29.CNhs12902.12637-134F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12637-134F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day27Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_ctss_rev H9MelanocyticInduction_Day27Br1- bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_reverse 0 244 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep1%20%28H9EB-1%20d27%29.CNhs12902.12637-134F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12637-134F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day27Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHuvecSignal HUVEC Sg bigWig 0 6744.03 HUVEC umbilical vein endothelial cell DNaseI Signal from ENCODE 0 244 85 255 215 170 255 235 0 0 0 regulation 1 color 85,255,215\ longLabel HUVEC umbilical vein endothelial cell DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal on\ shortLabel HUVEC Sg\ subGroups view=c_Signal cellType=HUVEC treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHuvecSignal\ type bigWig 0 6744.03\ encTfChipPkENCFF477ANT H1-hESC EGR1 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in H1-hESC from ENCODE 3 (ENCFF477ANT) 0 245 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EGR1 in H1-hESC from ENCODE 3 (ENCFF477ANT)\ parent encTfChipPk off\ shortLabel H1-hESC EGR1\ subGroups cellType=H1-hESC factor=EGR1\ track encTfChipPkENCFF477ANT\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_tpm_fwd H9MelanocyticInduction_Day27Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_forward 1 245 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep2%20%28H9EB-2%20d27%29.CNhs12835.12735-135H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12735-135H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day27Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_ctss_fwd H9MelanocyticInduction_Day27Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_forward 0 245 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep2%20%28H9EB-2%20d27%29.CNhs12835.12735-135H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12735-135H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day27Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHmveclblSignal HMVEC-LBl Sg bigWig 0 2898.86 HMVEC-LBl lung microvascular epithelium. blood DNaseI Signal from ENCODE 0 245 85 255 220 170 255 237 0 0 0 regulation 1 color 85,255,220\ longLabel HMVEC-LBl lung microvascular epithelium. blood DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HMVEC-LBl Sg\ subGroups view=c_Signal cellType=HMVEC-LBl treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmveclblSignal\ type bigWig 0 2898.86\ encTfChipPkENCFF834UVX H1-hESC EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in H1-hESC from ENCODE 3 (ENCFF834UVX) 0 246 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in H1-hESC from ENCODE 3 (ENCFF834UVX)\ parent encTfChipPk off\ shortLabel H1-hESC EP300 1\ subGroups cellType=H1-hESC factor=EP300\ track encTfChipPkENCFF834UVX\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_tpm_rev H9MelanocyticInduction_Day27Br2- bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_reverse 1 246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep2%20%28H9EB-2%20d27%29.CNhs12835.12735-135H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12735-135H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day27Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_ctss_rev H9MelanocyticInduction_Day27Br2- bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_reverse 0 246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep2%20%28H9EB-2%20d27%29.CNhs12835.12735-135H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12735-135H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day27Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHmvecdbladSignal HMVEC-dBl-Ad Sg bigWig 0 6571.28 HMVEC-dBl-Ad dermal MV endothelial cell, blood DNaseI Signal from ENCODE 0 246 85 255 224 170 255 239 0 0 0 regulation 1 color 85,255,224\ longLabel HMVEC-dBl-Ad dermal MV endothelial cell, blood DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HMVEC-dBl-Ad Sg\ subGroups view=c_Signal cellType=HMVEC-dBl-Ad treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdbladSignal\ type bigWig 0 6571.28\ encTfChipPkENCFF483HNU H1-hESC EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in H1-hESC from ENCODE 3 (ENCFF483HNU) 0 247 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in H1-hESC from ENCODE 3 (ENCFF483HNU)\ parent encTfChipPk off\ shortLabel H1-hESC EP300 2\ subGroups cellType=H1-hESC factor=EP300\ track encTfChipPkENCFF483HNU\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_tpm_fwd H9MelanocyticInduction_Day27Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_forward 1 247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep3%20%28H9EB-3%20d27%29.CNhs12917.12833-137A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12833-137A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day27Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_ctss_fwd H9MelanocyticInduction_Day27Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_forward 0 247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep3%20%28H9EB-3%20d27%29.CNhs12917.12833-137A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12833-137A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day27Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHmvecdlyneoSignal HMVEC-dLy-Neo Sg bigWig 0 9237.62 HMVEC-dLy-Neo dermal MV end cell, neonate lymph DNaseI Signal from ENCODE 0 247 85 255 226 170 255 240 0 0 0 regulation 1 color 85,255,226\ longLabel HMVEC-dLy-Neo dermal MV end cell, neonate lymph DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HMVEC-dLy-Neo Sg\ subGroups view=c_Signal cellType=HMVEC-dLy-Neo treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdlyneoSignal\ type bigWig 0 9237.62\ encTfChipPkENCFF063OKB H1-hESC FOSL1 narrowPeak Transcription Factor ChIP-seq Peaks of FOSL1 in H1-hESC from ENCODE 3 (ENCFF063OKB) 0 248 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOSL1 in H1-hESC from ENCODE 3 (ENCFF063OKB)\ parent encTfChipPk off\ shortLabel H1-hESC FOSL1\ subGroups cellType=H1-hESC factor=FOSL1\ track encTfChipPkENCFF063OKB\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_tpm_rev H9MelanocyticInduction_Day27Br3- bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_reverse 1 248 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep3%20%28H9EB-3%20d27%29.CNhs12917.12833-137A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12833-137A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day27Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_ctss_rev H9MelanocyticInduction_Day27Br3- bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_reverse 0 248 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep3%20%28H9EB-3%20d27%29.CNhs12917.12833-137A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12833-137A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day27Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHmvecdblneoSignal HMVEC-dBl-Neo Sg bigWig 0 6275.08 HMVEC-dBl-Neo dermal MV endo cell, neonate blood DNaseI Signal from ENCODE 0 248 85 255 229 170 255 242 0 0 0 regulation 1 color 85,255,229\ longLabel HMVEC-dBl-Neo dermal MV endo cell, neonate blood DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HMVEC-dBl-Neo Sg\ subGroups view=c_Signal cellType=HMVEC-dBl-Neo treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdblneoSignal\ type bigWig 0 6275.08\ encTfChipPkENCFF225GFQ H1-hESC GABPA narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in H1-hESC from ENCODE 3 (ENCFF225GFQ) 0 249 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GABPA in H1-hESC from ENCODE 3 (ENCFF225GFQ)\ parent encTfChipPk off\ shortLabel H1-hESC GABPA\ subGroups cellType=H1-hESC factor=GABPA\ track encTfChipPkENCFF225GFQ\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_tpm_fwd H9MelanocyticInduction_Day30Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_forward 1 249 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep1%20%28H9EB-1%20d30%29.CNhs12903.12638-134G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12638-134G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day30Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_ctss_fwd H9MelanocyticInduction_Day30Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_forward 0 249 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep1%20%28H9EB-1%20d30%29.CNhs12903.12638-134G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12638-134G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day30Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHrgecSignal HRGEC Sg bigWig 0 7095.64 HRGEC renal glomerular endothelial cell DNaseI Signal from ENCODE 0 249 85 255 232 170 255 243 0 0 0 regulation 1 color 85,255,232\ longLabel HRGEC renal glomerular endothelial cell DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HRGEC Sg\ subGroups view=c_Signal cellType=HRGEC treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwHrgecSignal\ type bigWig 0 7095.64\ encTfChipPkENCFF009IVJ H1-hESC HDAC2 1 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in H1-hESC from ENCODE 3 (ENCFF009IVJ) 0 250 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in H1-hESC from ENCODE 3 (ENCFF009IVJ)\ parent encTfChipPk off\ shortLabel H1-hESC HDAC2 1\ subGroups cellType=H1-hESC factor=HDAC2\ track encTfChipPkENCFF009IVJ\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_tpm_rev H9MelanocyticInduction_Day30Br1- bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_reverse 1 250 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep1%20%28H9EB-1%20d30%29.CNhs12903.12638-134G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12638-134G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day30Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_ctss_rev H9MelanocyticInduction_Day30Br1- bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_reverse 0 250 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep1%20%28H9EB-1%20d30%29.CNhs12903.12638-134G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12638-134G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day30Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHmvecllySignal HMVEC-LLy Sg bigWig 0 21274 HMVEC-LLy lung microvascular endothelial cell, lymph DNaseI Signal from ENCODE 0 250 85 255 243 170 255 249 0 0 0 regulation 1 color 85,255,243\ longLabel HMVEC-LLy lung microvascular endothelial cell, lymph DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HMVEC-LLy Sg\ subGroups view=c_Signal cellType=HMVEC-LLy treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecllySignal\ type bigWig 0 21274\ encTfChipPkENCFF497YNJ H1-hESC HDAC2 2 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in H1-hESC from ENCODE 3 (ENCFF497YNJ) 0 251 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in H1-hESC from ENCODE 3 (ENCFF497YNJ)\ parent encTfChipPk off\ shortLabel H1-hESC HDAC2 2\ subGroups cellType=H1-hESC factor=HDAC2\ track encTfChipPkENCFF497YNJ\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_tpm_fwd H9MelanocyticInduction_Day30Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_forward 1 251 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep2%20%28H9EB-2%20d30%29.CNhs12836.12736-135H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12736-135H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day30Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_ctss_fwd H9MelanocyticInduction_Day30Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_forward 0 251 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep2%20%28H9EB-2%20d30%29.CNhs12836.12736-135H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12736-135H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day30Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHmvecdneoSignal HMVEC-dNeo Sg bigWig 0 16586 HMVEC-dNeo dermal MV endothelial cell, neonate DNaseI Signal from ENCODE 0 251 85 255 244 170 255 249 0 0 0 regulation 1 color 85,255,244\ longLabel HMVEC-dNeo dermal MV endothelial cell, neonate DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HMVEC-dNeo Sg\ subGroups view=c_Signal cellType=HMVEC-dNeo treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdneoSignal\ type bigWig 0 16586\ encTfChipPkENCFF129WNO H1-hESC HDAC6 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC6 in H1-hESC from ENCODE 3 (ENCFF129WNO) 0 252 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of HDAC6 in H1-hESC from ENCODE 3 (ENCFF129WNO)\ parent encTfChipPk off\ shortLabel H1-hESC HDAC6\ subGroups cellType=H1-hESC factor=HDAC6\ track encTfChipPkENCFF129WNO\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_tpm_rev H9MelanocyticInduction_Day30Br2- bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_reverse 1 252 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep2%20%28H9EB-2%20d30%29.CNhs12836.12736-135H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12736-135H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day30Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_ctss_rev H9MelanocyticInduction_Day30Br2- bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_reverse 0 252 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep2%20%28H9EB-2%20d30%29.CNhs12836.12736-135H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12736-135H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day30Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHmvecdadSignal HMVEC-dAd Sg bigWig 0 7923.4 HMVEC-dAd dermal microvascular endothelial cell DNaseI Signal from ENCODE 0 252 85 255 246 170 255 250 0 0 0 regulation 1 color 85,255,246\ longLabel HMVEC-dAd dermal microvascular endothelial cell DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HMVEC-dAd Sg\ subGroups view=c_Signal cellType=HMVEC-dAd treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdadSignal\ type bigWig 0 7923.4\ encTfChipPkENCFF312GEN H1-hESC JUN narrowPeak Transcription Factor ChIP-seq Peaks of JUN in H1-hESC from ENCODE 3 (ENCFF312GEN) 0 253 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of JUN in H1-hESC from ENCODE 3 (ENCFF312GEN)\ parent encTfChipPk off\ shortLabel H1-hESC JUN\ subGroups cellType=H1-hESC factor=JUN\ track encTfChipPkENCFF312GEN\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_tpm_fwd H9MelanocyticInduction_Day30Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_forward 1 253 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep3%20%28H9EB-3%20d30%29.CNhs12918.12834-137A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12834-137A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day30Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_ctss_fwd H9MelanocyticInduction_Day30Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_forward 0 253 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep3%20%28H9EB-3%20d30%29.CNhs12918.12834-137A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12834-137A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day30Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHrcepicSignal HRCEpiC Sg bigWig 0 4920.93 HRCEpiC renal cortical epithelium DNaseI Signal from ENCODE 0 253 85 251 255 170 253 255 0 0 0 regulation 1 color 85,251,255\ longLabel HRCEpiC renal cortical epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HRCEpiC Sg\ subGroups view=c_Signal cellType=HRCEpiC treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwHrcepicSignal\ type bigWig 0 4920.93\ encTfChipPkENCFF443HNU H1-hESC JUND 1 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in H1-hESC from ENCODE 3 (ENCFF443HNU) 0 254 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of JUND in H1-hESC from ENCODE 3 (ENCFF443HNU)\ parent encTfChipPk off\ shortLabel H1-hESC JUND 1\ subGroups cellType=H1-hESC factor=JUND\ track encTfChipPkENCFF443HNU\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_tpm_rev H9MelanocyticInduction_Day30Br3- bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_reverse 1 254 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep3%20%28H9EB-3%20d30%29.CNhs12918.12834-137A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12834-137A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day30Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_ctss_rev H9MelanocyticInduction_Day30Br3- bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_reverse 0 254 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep3%20%28H9EB-3%20d30%29.CNhs12918.12834-137A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12834-137A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day30Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHreSignal HRE Sg bigWig 0 6938.49 HRE renal epithelium DNaseI Signal from ENCODE 0 254 85 248 255 170 251 255 0 0 0 regulation 1 color 85,248,255\ longLabel HRE renal epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HRE Sg\ subGroups view=c_Signal cellType=HRE treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwHreSignal\ type bigWig 0 6938.49\ encTfChipPkENCFF646IUA H1-hESC JUND 2 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in H1-hESC from ENCODE 3 (ENCFF646IUA) 0 255 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of JUND in H1-hESC from ENCODE 3 (ENCFF646IUA)\ parent encTfChipPk off\ shortLabel H1-hESC JUND 2\ subGroups cellType=H1-hESC factor=JUND\ track encTfChipPkENCFF646IUA\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_tpm_fwd H9MelanocyticInduction_Day34Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_forward 1 255 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep1%20%28H9EB-1%20d34%29.CNhs12904.12639-134G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12639-134G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day34Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_ctss_fwd H9MelanocyticInduction_Day34Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_forward 0 255 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep1%20%28H9EB-1%20d34%29.CNhs12904.12639-134G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12639-134G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day34Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwNhekSignal NHEK Sg bigWig 0 9597.75 NHEK epidermal keratinocyte DNaseI Signal from ENCODE 0 255 85 238 255 170 246 255 0 0 0 regulation 1 color 85,238,255\ longLabel NHEK epidermal keratinocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal on\ shortLabel NHEK Sg\ subGroups view=c_Signal cellType=NHEK treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwNhekSignal\ type bigWig 0 9597.75\ encTfChipPkENCFF562OAN H1-hESC KDM1A narrowPeak Transcription Factor ChIP-seq Peaks of KDM1A in H1-hESC from ENCODE 3 (ENCFF562OAN) 0 256 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of KDM1A in H1-hESC from ENCODE 3 (ENCFF562OAN)\ parent encTfChipPk off\ shortLabel H1-hESC KDM1A\ subGroups cellType=H1-hESC factor=KDM1A\ track encTfChipPkENCFF562OAN\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_tpm_rev H9MelanocyticInduction_Day34Br1- bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_reverse 1 256 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep1%20%28H9EB-1%20d34%29.CNhs12904.12639-134G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12639-134G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day34Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_ctss_rev H9MelanocyticInduction_Day34Br1- bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_reverse 0 256 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep1%20%28H9EB-1%20d34%29.CNhs12904.12639-134G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12639-134G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day34Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwSaecSignal SAEC Sg bigWig 0 4884.78 SAEC small airway epithelium DNaseI Signal from ENCODE 0 256 85 231 255 170 243 255 0 0 0 regulation 1 color 85,231,255\ longLabel SAEC small airway epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel SAEC Sg\ subGroups view=c_Signal cellType=SAEC treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwSaecSignal\ type bigWig 0 4884.78\ encTfChipPkENCFF205WRX H1-hESC KDM4A narrowPeak Transcription Factor ChIP-seq Peaks of KDM4A in H1-hESC from ENCODE 3 (ENCFF205WRX) 0 257 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of KDM4A in H1-hESC from ENCODE 3 (ENCFF205WRX)\ parent encTfChipPk off\ shortLabel H1-hESC KDM4A\ subGroups cellType=H1-hESC factor=KDM4A\ track encTfChipPkENCFF205WRX\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_tpm_fwd H9MelanocyticInduction_Day34Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_forward 1 257 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep2%20%28H9EB-2%20d34%29.CNhs12906.12737-135I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12737-135I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day34Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_ctss_fwd H9MelanocyticInduction_Day34Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_forward 0 257 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep2%20%28H9EB-2%20d34%29.CNhs12906.12737-135I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12737-135I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day34Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwPrecSignal PrEC Sg bigWig 0 4302.39 PrEC prostate epithelium DNaseI Signal from ENCODE 0 257 85 226 255 170 240 255 0 0 0 regulation 1 color 85,226,255\ longLabel PrEC prostate epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel PrEC Sg\ subGroups view=c_Signal cellType=PrEC treatment=n_a tissue=prostate cancer=normal\ track wgEncodeRegDnaseUwPrecSignal\ type bigWig 0 4302.39\ encTfChipPkENCFF342EEV H1-hESC KDM5A narrowPeak Transcription Factor ChIP-seq Peaks of KDM5A in H1-hESC from ENCODE 3 (ENCFF342EEV) 0 258 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of KDM5A in H1-hESC from ENCODE 3 (ENCFF342EEV)\ parent encTfChipPk off\ shortLabel H1-hESC KDM5A\ subGroups cellType=H1-hESC factor=KDM5A\ track encTfChipPkENCFF342EEV\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_tpm_rev H9MelanocyticInduction_Day34Br2- bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_reverse 1 258 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep2%20%28H9EB-2%20d34%29.CNhs12906.12737-135I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12737-135I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day34Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_ctss_rev H9MelanocyticInduction_Day34Br2- bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_reverse 0 258 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep2%20%28H9EB-2%20d34%29.CNhs12906.12737-135I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12737-135I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day34Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHeepicSignal HEEpiC Sg bigWig 0 20601.1 HEEpiC esophageal epithelium DNaseI Signal from ENCODE 0 258 85 220 255 170 237 255 0 0 0 regulation 1 color 85,220,255\ longLabel HEEpiC esophageal epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HEEpiC Sg\ subGroups view=c_Signal cellType=HEEpiC treatment=n_a tissue=esophagus cancer=normal\ track wgEncodeRegDnaseUwHeepicSignal\ type bigWig 0 20601.1\ wgEncodeRegDnaseUwGm06990Signal GM06990 Sg bigWig 0 14706.5 GM06990 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE 0 259 85 205 255 170 230 255 0 0 0 regulation 1 color 85,205,255\ longLabel GM06990 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel GM06990 Sg\ subGroups view=c_Signal cellType=GM06990 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwGm06990Signal\ type bigWig 0 14706.5\ encTfChipPkENCFF712RIS H1-hESC MAFK narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in H1-hESC from ENCODE 3 (ENCFF712RIS) 0 259 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MAFK in H1-hESC from ENCODE 3 (ENCFF712RIS)\ parent encTfChipPk off\ shortLabel H1-hESC MAFK\ subGroups cellType=H1-hESC factor=MAFK\ track encTfChipPkENCFF712RIS\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_tpm_fwd H9MelanocyticInduction_Day34Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_forward 1 259 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep3%20%28H9EB-3%20d34%29.CNhs12919.12835-137A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12835-137A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day34Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_ctss_fwd H9MelanocyticInduction_Day34Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_forward 0 259 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep3%20%28H9EB-3%20d34%29.CNhs12919.12835-137A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12835-137A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day34Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF392JJN H1-hESC MYC narrowPeak Transcription Factor ChIP-seq Peaks of MYC in H1-hESC from ENCODE 3 (ENCFF392JJN) 0 260 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MYC in H1-hESC from ENCODE 3 (ENCFF392JJN)\ parent encTfChipPk off\ shortLabel H1-hESC MYC\ subGroups cellType=H1-hESC factor=MYC\ track encTfChipPkENCFF392JJN\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_tpm_rev H9MelanocyticInduction_Day34Br3- bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_reverse 1 260 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep3%20%28H9EB-3%20d34%29.CNhs12919.12835-137A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12835-137A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day34Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_ctss_rev H9MelanocyticInduction_Day34Br3- bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_reverse 0 260 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep3%20%28H9EB-3%20d34%29.CNhs12919.12835-137A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12835-137A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day34Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHepg2Signal HepG2 Sg bigWig 0 4511.03 HepG2 hepatocellular carcinoma cell line DNaseI Signal from ENCODE 0 260 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel HepG2 hepatocellular carcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal on\ shortLabel HepG2 Sg\ subGroups view=c_Signal cellType=HepG2 treatment=n_a tissue=liver cancer=cancer\ track wgEncodeRegDnaseUwHepg2Signal\ type bigWig 0 4511.03\ wgEncodeRegDnaseUwCaco2Signal Caco-2 Sg bigWig 0 4903.16 Caco-2 colon adenocarcinoma cell line DNaseI Signal from ENCODE 0 261 85 193 255 170 224 255 0 0 0 regulation 1 color 85,193,255\ longLabel Caco-2 colon adenocarcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel Caco-2 Sg\ subGroups view=c_Signal cellType=Caco-2 treatment=n_a tissue=colon cancer=cancer\ track wgEncodeRegDnaseUwCaco2Signal\ type bigWig 0 4903.16\ encTfChipPkENCFF794GVQ H1-hESC NANOG narrowPeak Transcription Factor ChIP-seq Peaks of NANOG in H1-hESC from ENCODE 3 (ENCFF794GVQ) 0 261 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NANOG in H1-hESC from ENCODE 3 (ENCFF794GVQ)\ parent encTfChipPk off\ shortLabel H1-hESC NANOG\ subGroups cellType=H1-hESC factor=NANOG\ track encTfChipPkENCFF794GVQ\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_tpm_fwd H9MelanocyticInduction_Day41Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_forward 1 261 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep1%20%28H9EB-1%20d41%29.CNhs12905.12640-134G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12640-134G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day41Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_ctss_fwd H9MelanocyticInduction_Day41Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_forward 0 261 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep1%20%28H9EB-1%20d41%29.CNhs12905.12640-134G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12640-134G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day41Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF407IVS H1-hESC NRF1 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in H1-hESC from ENCODE 3 (ENCFF407IVS) 0 262 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NRF1 in H1-hESC from ENCODE 3 (ENCFF407IVS)\ parent encTfChipPk off\ shortLabel H1-hESC NRF1\ subGroups cellType=H1-hESC factor=NRF1\ track encTfChipPkENCFF407IVS\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_tpm_rev H9MelanocyticInduction_Day41Br1- bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_reverse 1 262 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep1%20%28H9EB-1%20d41%29.CNhs12905.12640-134G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12640-134G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day41Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_ctss_rev H9MelanocyticInduction_Day41Br1- bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_reverse 0 262 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep1%20%28H9EB-1%20d41%29.CNhs12905.12640-134G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12640-134G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day41Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwSknshraSignal SK-N-SH_RA Sg bigWig 0 4488.56 SK-N-SH_RA neuroblastoma cell line, RA treated DNaseI Signal from ENCODE 0 262 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel SK-N-SH_RA neuroblastoma cell line, RA treated DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel SK-N-SH_RA Sg\ subGroups view=c_Signal cellType=SK-N-SH_RA treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwSknshraSignal\ type bigWig 0 4488.56\ wgEncodeRegDnaseUwCd20ro01778Signal CD20+_RO01778 Sg bigWig 0 1572.73 CD20+_RO01778 B-lymphocyte, CD20+ DNaseI Signal from ENCODE 0 263 85 183 255 170 219 255 0 0 0 regulation 1 color 85,183,255\ longLabel CD20+_RO01778 B-lymphocyte, CD20+ DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel CD20+_RO01778 Sg\ subGroups view=c_Signal cellType=CD20_RO01778 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwCd20ro01778Signal\ type bigWig 0 1572.73\ encTfChipPkENCFF651QOL H1-hESC PHF8 narrowPeak Transcription Factor ChIP-seq Peaks of PHF8 in H1-hESC from ENCODE 3 (ENCFF651QOL) 0 263 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of PHF8 in H1-hESC from ENCODE 3 (ENCFF651QOL)\ parent encTfChipPk off\ shortLabel H1-hESC PHF8\ subGroups cellType=H1-hESC factor=PHF8\ track encTfChipPkENCFF651QOL\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_tpm_fwd H9MelanocyticInduction_Day41Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_forward 1 263 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep2%20%28H9EB-2%20d41%29.CNhs12907.12738-135I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12738-135I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day41Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_ctss_fwd H9MelanocyticInduction_Day41Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_forward 0 263 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep2%20%28H9EB-2%20d41%29.CNhs12907.12738-135I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12738-135I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day41Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF422HDN H1-hESC POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in H1-hESC from ENCODE 3 (ENCFF422HDN) 0 264 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in H1-hESC from ENCODE 3 (ENCFF422HDN)\ parent encTfChipPk off\ shortLabel H1-hESC POLR2A\ subGroups cellType=H1-hESC factor=POLR2A\ track encTfChipPkENCFF422HDN\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_tpm_rev H9MelanocyticInduction_Day41Br2- bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_reverse 1 264 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep2%20%28H9EB-2%20d41%29.CNhs12907.12738-135I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12738-135I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day41Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_ctss_rev H9MelanocyticInduction_Day41Br2- bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_reverse 0 264 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep2%20%28H9EB-2%20d41%29.CNhs12907.12738-135I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12738-135I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day41Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwTh1Signal Th1 Sg bigWig 0 2056.65 Th1 T-lymphocyte, helper type 1 DNaseI Signal from ENCODE 0 264 85 178 255 170 216 255 0 0 0 regulation 1 color 85,178,255\ longLabel Th1 T-lymphocyte, helper type 1 DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel Th1 Sg\ subGroups view=c_Signal cellType=Th1 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwTh1Signal\ type bigWig 0 2056.65\ encTfChipPkENCFF255FRL H1-hESC RAD21 1 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in H1-hESC from ENCODE 3 (ENCFF255FRL) 0 265 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD21 in H1-hESC from ENCODE 3 (ENCFF255FRL)\ parent encTfChipPk off\ shortLabel H1-hESC RAD21 1\ subGroups cellType=H1-hESC factor=RAD21\ track encTfChipPkENCFF255FRL\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_tpm_fwd H9MelanocyticInduction_Day41Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_forward 1 265 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep3%20%28H9EB-3%20d41%29.CNhs12950.12836-137B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12836-137B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day41Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_ctss_fwd H9MelanocyticInduction_Day41Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_forward 0 265 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep3%20%28H9EB-3%20d41%29.CNhs12950.12836-137B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12836-137B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day41Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwTh2Signal Th2 Sg bigWig 0 1526.14 Th2 T-lymphocyte, helper type 2 DNaseI Signal from ENCODE 0 265 85 176 255 170 215 255 0 0 0 regulation 1 color 85,176,255\ longLabel Th2 T-lymphocyte, helper type 2 DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel Th2 Sg\ subGroups view=c_Signal cellType=Th2 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwTh2Signal\ type bigWig 0 1526.14\ encTfChipPkENCFF060IVS H1-hESC RAD21 2 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in H1-hESC from ENCODE 3 (ENCFF060IVS) 0 266 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD21 in H1-hESC from ENCODE 3 (ENCFF060IVS)\ parent encTfChipPk off\ shortLabel H1-hESC RAD21 2\ subGroups cellType=H1-hESC factor=RAD21\ track encTfChipPkENCFF060IVS\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_tpm_rev H9MelanocyticInduction_Day41Br3- bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_reverse 1 266 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep3%20%28H9EB-3%20d41%29.CNhs12950.12836-137B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12836-137B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day41Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_ctss_rev H9MelanocyticInduction_Day41Br3- bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_reverse 0 266 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep3%20%28H9EB-3%20d41%29.CNhs12950.12836-137B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12836-137B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day41Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwTh1wb54553204Signal Th1_Wb54553204 Sg bigWig 0 593.107 Th1_Wb54553204 T-lymphocyte, helper type 1 DNaseI Signal from ENCODE 0 266 85 173 255 170 214 255 0 0 0 regulation 1 color 85,173,255\ longLabel Th1_Wb54553204 T-lymphocyte, helper type 1 DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel Th1_Wb54553204 Sg\ subGroups view=c_Signal cellType=Th1_Wb54553204 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwTh1wb54553204Signal\ type bigWig 0 593.107\ encTfChipPkENCFF607WCG H1-hESC RBBP5 narrowPeak Transcription Factor ChIP-seq Peaks of RBBP5 in H1-hESC from ENCODE 3 (ENCFF607WCG) 0 267 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RBBP5 in H1-hESC from ENCODE 3 (ENCFF607WCG)\ parent encTfChipPk off\ shortLabel H1-hESC RBBP5\ subGroups cellType=H1-hESC factor=RBBP5\ track encTfChipPkENCFF607WCG\ wgEncodeRegDnaseUwJurkatSignal Jurkat Sg bigWig 0 5823.31 Jurkat T-lymphocyte acute leukemia cell line DNaseI Signal from ENCODE 0 267 85 165 255 170 210 255 0 0 0 regulation 1 color 85,165,255\ longLabel Jurkat T-lymphocyte acute leukemia cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel Jurkat Sg\ subGroups view=c_Signal cellType=Jurkat treatment=n_a tissue=blood cancer=cancer\ track wgEncodeRegDnaseUwJurkatSignal\ type bigWig 0 5823.31\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_tpm_fwd Tc:ARPE-19Emt_00hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_forward 1 267 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep1.CNhs14463.13625-146H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13625-146H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_ctss_fwd Tc:ARPE-19Emt_00hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_forward 0 267 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep1.CNhs14463.13625-146H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13625-146H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwGm12878Signal GM12878 Sg bigWig 0 7218.11 GM12878 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE 0 268 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel GM12878 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal on\ shortLabel GM12878 Sg\ subGroups view=c_Signal cellType=GM12878 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwGm12878Signal\ type bigWig 0 7218.11\ encTfChipPkENCFF779CWH H1-hESC REST 1 narrowPeak Transcription Factor ChIP-seq Peaks of REST in H1-hESC from ENCODE 3 (ENCFF779CWH) 0 268 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of REST in H1-hESC from ENCODE 3 (ENCFF779CWH)\ parent encTfChipPk on\ shortLabel H1-hESC REST 1\ subGroups cellType=H1-hESC factor=REST\ track encTfChipPkENCFF779CWH\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_tpm_rev Tc:ARPE-19Emt_00hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_reverse 1 268 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep1.CNhs14463.13625-146H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13625-146H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_ctss_rev Tc:ARPE-19Emt_00hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_reverse 0 268 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep1.CNhs14463.13625-146H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13625-146H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwGm12865Signal GM12865 Sg bigWig 0 8525.5 GM12865 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE 0 269 85 147 255 170 201 255 0 0 0 regulation 1 color 85,147,255\ longLabel GM12865 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel GM12865 Sg\ subGroups view=c_Signal cellType=GM12865 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwGm12865Signal\ type bigWig 0 8525.5\ encTfChipPkENCFF403CAJ H1-hESC REST 2 narrowPeak Transcription Factor ChIP-seq Peaks of REST in H1-hESC from ENCODE 3 (ENCFF403CAJ) 0 269 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of REST in H1-hESC from ENCODE 3 (ENCFF403CAJ)\ parent encTfChipPk off\ shortLabel H1-hESC REST 2\ subGroups cellType=H1-hESC factor=REST\ track encTfChipPkENCFF403CAJ\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_tpm_fwd Tc:ARPE-19Emt_00hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_forward 1 269 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep2.CNhs14464.13626-146H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13626-146H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_ctss_fwd Tc:ARPE-19Emt_00hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_forward 0 269 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep2.CNhs14464.13626-146H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13626-146H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF062WBN H1-hESC RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in H1-hESC from ENCODE 3 (ENCFF062WBN) 0 270 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RFX5 in H1-hESC from ENCODE 3 (ENCFF062WBN)\ parent encTfChipPk off\ shortLabel H1-hESC RFX5\ subGroups cellType=H1-hESC factor=RFX5\ track encTfChipPkENCFF062WBN\ wgEncodeRegDnaseUwMonocytescd14ro01746Signal Monocyte-CD14+ Sg bigWig 0 853.111 Monocytes-CD14+_RO01746 monocyte, CD14+ DNaseI Signal from ENCODE 0 270 85 135 255 170 195 255 0 0 0 regulation 1 color 85,135,255\ longLabel Monocytes-CD14+_RO01746 monocyte, CD14+ DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel Monocyte-CD14+ Sg\ subGroups view=c_Signal cellType=Monocytes_CD14_RO01746 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwMonocytescd14ro01746Signal\ type bigWig 0 853.111\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_tpm_rev Tc:ARPE-19Emt_00hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_reverse 1 270 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep2.CNhs14464.13626-146H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13626-146H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_ctss_rev Tc:ARPE-19Emt_00hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_reverse 0 270 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep2.CNhs14464.13626-146H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13626-146H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF283MNG H1-hESC RNF2 narrowPeak Transcription Factor ChIP-seq Peaks of RNF2 in H1-hESC from ENCODE 3 (ENCFF283MNG) 0 271 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RNF2 in H1-hESC from ENCODE 3 (ENCFF283MNG)\ parent encTfChipPk off\ shortLabel H1-hESC RNF2\ subGroups cellType=H1-hESC factor=RNF2\ track encTfChipPkENCFF283MNG\ wgEncodeRegDnaseUwHl60Signal HL-60 Sg bigWig 0 5012.92 HL-60 acute promyelocytic leukemia (APL) cell line DNaseI Signal from ENCODE 0 271 85 124 255 170 189 255 0 0 0 regulation 1 color 85,124,255\ longLabel HL-60 acute promyelocytic leukemia (APL) cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HL-60 Sg\ subGroups view=c_Signal cellType=HL-60 treatment=n_a tissue=blood cancer=cancer\ track wgEncodeRegDnaseUwHl60Signal\ type bigWig 0 5012.92\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_tpm_fwd Tc:ARPE-19Emt_00hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_forward 1 271 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep3.CNhs14465.13627-146H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13627-146H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_ctss_fwd Tc:ARPE-19Emt_00hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_forward 0 271 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep3.CNhs14465.13627-146H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13627-146H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF430SIE H1-hESC RXRA narrowPeak Transcription Factor ChIP-seq Peaks of RXRA in H1-hESC from ENCODE 3 (ENCFF430SIE) 0 272 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RXRA in H1-hESC from ENCODE 3 (ENCFF430SIE)\ parent encTfChipPk off\ shortLabel H1-hESC RXRA\ subGroups cellType=H1-hESC factor=RXRA\ track encTfChipPkENCFF430SIE\ wgEncodeRegDnaseUwNb4Signal NB4 Sg bigWig 0 7662.2 NB4 acute promyelocytic leukemia (APL) cell line DNaseI Signal from ENCODE 0 272 85 112 255 170 183 255 0 0 0 regulation 1 color 85,112,255\ longLabel NB4 acute promyelocytic leukemia (APL) cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel NB4 Sg\ subGroups view=c_Signal cellType=NB4 treatment=n_a tissue=bone_marrow cancer=cancer\ track wgEncodeRegDnaseUwNb4Signal\ type bigWig 0 7662.2\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_tpm_rev Tc:ARPE-19Emt_00hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_reverse 1 272 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep3.CNhs14465.13627-146H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13627-146H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_ctss_rev Tc:ARPE-19Emt_00hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_reverse 0 272 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep3.CNhs14465.13627-146H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13627-146H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF193TFR H1-hESC SAP30 narrowPeak Transcription Factor ChIP-seq Peaks of SAP30 in H1-hESC from ENCODE 3 (ENCFF193TFR) 0 273 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SAP30 in H1-hESC from ENCODE 3 (ENCFF193TFR)\ parent encTfChipPk off\ shortLabel H1-hESC SAP30\ subGroups cellType=H1-hESC factor=SAP30\ track encTfChipPkENCFF193TFR\ wgEncodeRegDnaseUwH7hescSignal H7-ES Sg bigWig 0 13035.4 H7-hESC embryonic stem cell DNaseI Signal from ENCODE 0 273 85 93 255 170 174 255 0 0 0 regulation 1 color 85,93,255\ longLabel H7-hESC embryonic stem cell DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal on\ shortLabel H7-ES Sg\ subGroups view=c_Signal cellType=H7-hESC treatment=n_a tissue=embryo cancer=unknown\ track wgEncodeRegDnaseUwH7hescSignal\ type bigWig 0 13035.4\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_tpm_fwd Tc:ARPE-19Emt_00hr15minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_forward 1 273 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep1.CNhs14466.13628-146I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13628-146I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_ctss_fwd Tc:ARPE-19Emt_00hr15minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_forward 0 273 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep1.CNhs14466.13628-146I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13628-146I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF905VZD H1-hESC SIN3A 1 narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in H1-hESC from ENCODE 3 (ENCFF905VZD) 0 274 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SIN3A in H1-hESC from ENCODE 3 (ENCFF905VZD)\ parent encTfChipPk off\ shortLabel H1-hESC SIN3A 1\ subGroups cellType=H1-hESC factor=SIN3A\ track encTfChipPkENCFF905VZD\ wgEncodeRegDnaseUwH7hescDiffprota5dSignal H7-ES diff 5d Sg bigWig 0 5836.88 H7-hESC embryonic stem cell (diff 5d) DNaseI Signal from ENCODE 0 274 85 88 255 170 171 255 0 0 0 regulation 1 color 85,88,255\ longLabel H7-hESC embryonic stem cell (diff 5d) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel H7-ES diff 5d Sg\ subGroups view=c_Signal cellType=H7-hESC treatment=diffProtA_5d tissue=embryo cancer=unknown\ track wgEncodeRegDnaseUwH7hescDiffprota5dSignal\ type bigWig 0 5836.88\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_tpm_rev Tc:ARPE-19Emt_00hr15minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_reverse 1 274 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep1.CNhs14466.13628-146I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13628-146I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_ctss_rev Tc:ARPE-19Emt_00hr15minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_reverse 0 274 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep1.CNhs14466.13628-146I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13628-146I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF514BGQ H1-hESC SIN3A 2 narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in H1-hESC from ENCODE 3 (ENCFF514BGQ) 0 275 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SIN3A in H1-hESC from ENCODE 3 (ENCFF514BGQ)\ parent encTfChipPk off\ shortLabel H1-hESC SIN3A 2\ subGroups cellType=H1-hESC factor=SIN3A\ track encTfChipPkENCFF514BGQ\ wgEncodeRegDnaseUwH7hescDiffprota14dSignal H7-ES diff 14d Sg bigWig 0 21393.7 H7-hESC embryonic stem cell (diff 14d) DNaseI Signal from ENCODE 0 275 89 85 255 172 170 255 0 0 0 regulation 1 color 89,85,255\ longLabel H7-hESC embryonic stem cell (diff 14d) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel H7-ES diff 14d Sg\ subGroups view=c_Signal cellType=H7-hESC treatment=diffProtA_14d tissue=embryo cancer=unknown\ track wgEncodeRegDnaseUwH7hescDiffprota14dSignal\ type bigWig 0 21393.7\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_tpm_fwd Tc:ARPE-19Emt_00hr15minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_forward 1 275 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep2.CNhs14467.13629-146I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13629-146I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_ctss_fwd Tc:ARPE-19Emt_00hr15minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_forward 0 275 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep2.CNhs14467.13629-146I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13629-146I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF539KSF H1-hESC SIRT6 narrowPeak Transcription Factor ChIP-seq Peaks of SIRT6 in H1-hESC from ENCODE 3 (ENCFF539KSF) 0 276 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SIRT6 in H1-hESC from ENCODE 3 (ENCFF539KSF)\ parent encTfChipPk off\ shortLabel H1-hESC SIRT6\ subGroups cellType=H1-hESC factor=SIRT6\ track encTfChipPkENCFF539KSF\ wgEncodeRegDnaseUwRptecSignal RPTEC Sg bigWig 0 22767.8 RPTEC renal proximal tubule epithelium DNaseI Signal from ENCODE 0 276 100 85 255 177 170 255 0 0 0 regulation 1 color 100,85,255\ longLabel RPTEC renal proximal tubule epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel RPTEC Sg\ subGroups view=c_Signal cellType=RPTEC treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwRptecSignal\ type bigWig 0 22767.8\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_tpm_rev Tc:ARPE-19Emt_00hr15minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_reverse 1 276 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep2.CNhs14467.13629-146I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13629-146I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_ctss_rev Tc:ARPE-19Emt_00hr15minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_reverse 0 276 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep2.CNhs14467.13629-146I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13629-146I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF644BNN H1-hESC SIX5 narrowPeak Transcription Factor ChIP-seq Peaks of SIX5 in H1-hESC from ENCODE 3 (ENCFF644BNN) 0 277 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SIX5 in H1-hESC from ENCODE 3 (ENCFF644BNN)\ parent encTfChipPk off\ shortLabel H1-hESC SIX5\ subGroups cellType=H1-hESC factor=SIX5\ track encTfChipPkENCFF644BNN\ wgEncodeRegDnaseUwHrpepicSignal HRPEpiC Sg bigWig 0 32404.6 HRPEpiC retinal pigment epithelium DNaseI Signal from ENCODE 0 277 124 85 255 189 170 255 0 0 0 regulation 1 color 124,85,255\ longLabel HRPEpiC retinal pigment epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HRPEpiC Sg\ subGroups view=c_Signal cellType=HRPEpiC treatment=n_a tissue=eye cancer=normal\ track wgEncodeRegDnaseUwHrpepicSignal\ type bigWig 0 32404.6\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_tpm_fwd Tc:ARPE-19Emt_00hr15minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_forward 1 277 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep3.CNhs14468.13630-146I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13630-146I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_ctss_fwd Tc:ARPE-19Emt_00hr15minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_forward 0 277 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep3.CNhs14468.13630-146I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13630-146I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF500JFI H1-hESC SP1 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in H1-hESC from ENCODE 3 (ENCFF500JFI) 0 278 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SP1 in H1-hESC from ENCODE 3 (ENCFF500JFI)\ parent encTfChipPk off\ shortLabel H1-hESC SP1\ subGroups cellType=H1-hESC factor=SP1\ track encTfChipPkENCFF500JFI\ wgEncodeRegDnaseUwHmvecdlyadSignal HMVEC-dLy-Ad Sg bigWig 0 39771.9 HMVEC-dLy-Ad dermal MV endothelial cell, lymph DNaseI Signal from ENCODE 0 278 133 85 255 194 170 255 0 0 0 regulation 1 color 133,85,255\ longLabel HMVEC-dLy-Ad dermal MV endothelial cell, lymph DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HMVEC-dLy-Ad Sg\ subGroups view=c_Signal cellType=HMVEC-dLy-Ad treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdlyadSignal\ type bigWig 0 39771.9\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_tpm_rev Tc:ARPE-19Emt_00hr15minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_reverse 1 278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep3.CNhs14468.13630-146I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13630-146I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_ctss_rev Tc:ARPE-19Emt_00hr15minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_reverse 0 278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep3.CNhs14468.13630-146I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13630-146I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF345IDL H1-hESC SRF narrowPeak Transcription Factor ChIP-seq Peaks of SRF in H1-hESC from ENCODE 3 (ENCFF345IDL) 0 279 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SRF in H1-hESC from ENCODE 3 (ENCFF345IDL)\ parent encTfChipPk off\ shortLabel H1-hESC SRF\ subGroups cellType=H1-hESC factor=SRF\ track encTfChipPkENCFF345IDL\ wgEncodeRegDnaseUwHelas3Signal HeLa-S3 Sg bigWig 0 26492 HeLa-S3 cervical epithelial adenocarcinoma cell line DNaseI Signal from ENCODE 0 279 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel HeLa-S3 cervical epithelial adenocarcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal on\ shortLabel HeLa-S3 Sg\ subGroups view=c_Signal cellType=HeLa-S3 treatment=n_a tissue=cervix cancer=cancer\ track wgEncodeRegDnaseUwHelas3Signal\ type bigWig 0 26492\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_tpm_fwd Tc:ARPE-19Emt_00hr30minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_forward 1 279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep1.CNhs14469.13631-146I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13631-146I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_ctss_fwd Tc:ARPE-19Emt_00hr30minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_forward 0 279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep1.CNhs14469.13631-146I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13631-146I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF671SZQ H1-hESC SUZ12 narrowPeak Transcription Factor ChIP-seq Peaks of SUZ12 in H1-hESC from ENCODE 3 (ENCFF671SZQ) 0 280 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SUZ12 in H1-hESC from ENCODE 3 (ENCFF671SZQ)\ parent encTfChipPk off\ shortLabel H1-hESC SUZ12\ subGroups cellType=H1-hESC factor=SUZ12\ track encTfChipPkENCFF671SZQ\ wgEncodeRegDnaseUwSknmcSignal SK-N-MC Sg bigWig 0 5864.79 SK-N-MC neuroepithelioma cell line DNaseI Signal from ENCODE 0 280 176 85 255 215 170 255 0 0 0 regulation 1 color 176,85,255\ longLabel SK-N-MC neuroepithelioma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel SK-N-MC Sg\ subGroups view=c_Signal cellType=SK-N-MC treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwSknmcSignal\ type bigWig 0 5864.79\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_tpm_rev Tc:ARPE-19Emt_00hr30minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_reverse 1 280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep1.CNhs14469.13631-146I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13631-146I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_ctss_rev Tc:ARPE-19Emt_00hr30minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_reverse 0 280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep1.CNhs14469.13631-146I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13631-146I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF870SFJ H1-hESC TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in H1-hESC from ENCODE 3 (ENCFF870SFJ) 0 281 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TAF1 in H1-hESC from ENCODE 3 (ENCFF870SFJ)\ parent encTfChipPk off\ shortLabel H1-hESC TAF1\ subGroups cellType=H1-hESC factor=TAF1\ track encTfChipPkENCFF870SFJ\ wgEncodeRegDnaseUwMcf7Signal MCF-7 Sg bigWig 0 15780.8 MCF-7 mammary adenocarcinoma cell line DNaseI Signal from ENCODE 0 281 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel MCF-7 Sg\ subGroups view=c_Signal cellType=MCF-7 treatment=n_a tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwMcf7Signal\ type bigWig 0 15780.8\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_tpm_fwd Tc:ARPE-19Emt_00hr30minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_forward 1 281 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep2.CNhs14470.13632-146I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13632-146I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_ctss_fwd Tc:ARPE-19Emt_00hr30minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_forward 0 281 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep2.CNhs14470.13632-146I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13632-146I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF243PSJ H1-hESC TAF7 narrowPeak Transcription Factor ChIP-seq Peaks of TAF7 in H1-hESC from ENCODE 3 (ENCFF243PSJ) 0 282 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TAF7 in H1-hESC from ENCODE 3 (ENCFF243PSJ)\ parent encTfChipPk off\ shortLabel H1-hESC TAF7\ subGroups cellType=H1-hESC factor=TAF7\ track encTfChipPkENCFF243PSJ\ wgEncodeRegDnaseUwMcf7Estradiolctrl0hrSignal MCF-7 estr 0h Sg bigWig 0 23308.2 MCF-7 mammary adenocarcinoma cell line (estradi 0h) DNaseI Signal from ENCODE 0 282 192 85 255 223 170 255 0 0 0 regulation 1 color 192,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line (estradi 0h) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel MCF-7 estr 0h Sg\ subGroups view=c_Signal cellType=MCF-7 treatment=Estradiol_ctrl_0hr tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwMcf7Estradiolctrl0hrSignal\ type bigWig 0 23308.2\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_tpm_rev Tc:ARPE-19Emt_00hr30minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_reverse 1 282 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep2.CNhs14470.13632-146I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13632-146I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_ctss_rev Tc:ARPE-19Emt_00hr30minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_reverse 0 282 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep2.CNhs14470.13632-146I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13632-146I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF748YXF H1-hESC TBP narrowPeak Transcription Factor ChIP-seq Peaks of TBP in H1-hESC from ENCODE 3 (ENCFF748YXF) 0 283 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TBP in H1-hESC from ENCODE 3 (ENCFF748YXF)\ parent encTfChipPk off\ shortLabel H1-hESC TBP\ subGroups cellType=H1-hESC factor=TBP\ track encTfChipPkENCFF748YXF\ wgEncodeRegDnaseUwMcf7Estradiol100nm1hrSignal MCF-7 estr 1h Sg bigWig 0 24234.6 MCF-7 mammary adenocarcinoma cell line (estradi 1h) DNaseI Signal from ENCODE 0 283 192 85 255 223 170 255 0 0 0 regulation 1 color 192,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line (estradi 1h) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel MCF-7 estr 1h Sg\ subGroups view=c_Signal cellType=MCF-7 treatment=Estradiol_100nM_1hr tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwMcf7Estradiol100nm1hrSignal\ type bigWig 0 24234.6\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_tpm_fwd Tc:ARPE-19Emt_00hr30minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_forward 1 283 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep3.CNhs14471.13633-146I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13633-146I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_ctss_fwd Tc:ARPE-19Emt_00hr30minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_forward 0 283 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep3.CNhs14471.13633-146I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13633-146I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF740HPV H1-hESC TCF12 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in H1-hESC from ENCODE 3 (ENCFF740HPV) 0 284 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TCF12 in H1-hESC from ENCODE 3 (ENCFF740HPV)\ parent encTfChipPk off\ shortLabel H1-hESC TCF12\ subGroups cellType=H1-hESC factor=TCF12\ track encTfChipPkENCFF740HPV\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_tpm_rev Tc:ARPE-19Emt_00hr30minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_reverse 1 284 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep3.CNhs14471.13633-146I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13633-146I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_ctss_rev Tc:ARPE-19Emt_00hr30minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_reverse 0 284 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep3.CNhs14471.13633-146I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13633-146I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwWerirb1Signal WERI-Rb-1 Sg bigWig 0 8726.43 WERI-Rb-1 retinoblastoma cell line DNaseI Signal from ENCODE 0 284 211 85 255 233 170 255 0 0 0 regulation 1 color 211,85,255\ longLabel WERI-Rb-1 retinoblastoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel WERI-Rb-1 Sg\ subGroups view=c_Signal cellType=WERI-Rb-1 treatment=n_a tissue=eye cancer=cancer\ track wgEncodeRegDnaseUwWerirb1Signal\ type bigWig 0 8726.43\ wgEncodeRegDnaseUwBe2cSignal BE2_C Sg bigWig 0 72865.5 BE2_C neuroblastoma cell line DNaseI Signal from ENCODE 0 285 237 85 255 246 170 255 0 0 0 regulation 1 color 237,85,255\ longLabel BE2_C neuroblastoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel BE2_C Sg\ subGroups view=c_Signal cellType=BE2_C treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwBe2cSignal\ type bigWig 0 72865.5\ encTfChipPkENCFF699HXL H1-hESC USF1 narrowPeak Transcription Factor ChIP-seq Peaks of USF1 in H1-hESC from ENCODE 3 (ENCFF699HXL) 0 285 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of USF1 in H1-hESC from ENCODE 3 (ENCFF699HXL)\ parent encTfChipPk off\ shortLabel H1-hESC USF1\ subGroups cellType=H1-hESC factor=USF1\ track encTfChipPkENCFF699HXL\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_tpm_fwd Tc:ARPE-19Emt_00hr45minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_forward 1 285 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep1.CNhs14472.13634-146I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13634-146I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_ctss_fwd Tc:ARPE-19Emt_00hr45minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_forward 0 285 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep1.CNhs14472.13634-146I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13634-146I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF710JBU H1-hESC USF2 narrowPeak Transcription Factor ChIP-seq Peaks of USF2 in H1-hESC from ENCODE 3 (ENCFF710JBU) 0 286 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of USF2 in H1-hESC from ENCODE 3 (ENCFF710JBU)\ parent encTfChipPk off\ shortLabel H1-hESC USF2\ subGroups cellType=H1-hESC factor=USF2\ track encTfChipPkENCFF710JBU\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_tpm_rev Tc:ARPE-19Emt_00hr45minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_reverse 1 286 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep1.CNhs14472.13634-146I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13634-146I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_ctss_rev Tc:ARPE-19Emt_00hr45minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_reverse 0 286 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep1.CNhs14472.13634-146I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13634-146I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF509GYP H1-hESC YY1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in H1-hESC from ENCODE 3 (ENCFF509GYP) 0 287 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of YY1 in H1-hESC from ENCODE 3 (ENCFF509GYP)\ parent encTfChipPk off\ shortLabel H1-hESC YY1\ subGroups cellType=H1-hESC factor=YY1\ track encTfChipPkENCFF509GYP\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_tpm_fwd Tc:ARPE-19Emt_00hr45minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_forward 1 287 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep2.CNhs14473.13635-146I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13635-146I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_ctss_fwd Tc:ARPE-19Emt_00hr45minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_forward 0 287 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep2.CNhs14473.13635-146I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13635-146I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF933WSP H1-hESC ZNF143 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF143 in H1-hESC from ENCODE 3 (ENCFF933WSP) 0 288 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF143 in H1-hESC from ENCODE 3 (ENCFF933WSP)\ parent encTfChipPk off\ shortLabel H1-hESC ZNF143\ subGroups cellType=H1-hESC factor=ZNF143\ track encTfChipPkENCFF933WSP\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_tpm_rev Tc:ARPE-19Emt_00hr45minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_reverse 1 288 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep2.CNhs14473.13635-146I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13635-146I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_ctss_rev Tc:ARPE-19Emt_00hr45minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_reverse 0 288 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep2.CNhs14473.13635-146I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13635-146I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF723LVE H54 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in H54 from ENCODE 3 (ENCFF723LVE) 0 289 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in H54 from ENCODE 3 (ENCFF723LVE)\ parent encTfChipPk off\ shortLabel H54 CTCF\ subGroups cellType=H54 factor=CTCF\ track encTfChipPkENCFF723LVE\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_tpm_fwd Tc:ARPE-19Emt_00hr45minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_forward 1 289 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep3.CNhs14474.13636-146I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13636-146I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_ctss_fwd Tc:ARPE-19Emt_00hr45minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_forward 0 289 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep3.CNhs14474.13636-146I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13636-146I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF549PGC HCT116 CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in HCT116 from ENCODE 3 (ENCFF549PGC) 0 290 255 150 85 255 202 170 0 0 0 regulation 1 color 255,150,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in HCT116 from ENCODE 3 (ENCFF549PGC)\ parent encTfChipPk off\ shortLabel HCT116 CTCF 1\ subGroups cellType=HCT116 factor=CTCF\ track encTfChipPkENCFF549PGC\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_tpm_rev Tc:ARPE-19Emt_00hr45minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_reverse 1 290 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep3.CNhs14474.13636-146I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13636-146I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_ctss_rev Tc:ARPE-19Emt_00hr45minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_reverse 0 290 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep3.CNhs14474.13636-146I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13636-146I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF518MQA HCT116 CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in HCT116 from ENCODE 3 (ENCFF518MQA) 0 291 255 150 85 255 202 170 0 0 0 regulation 1 color 255,150,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in HCT116 from ENCODE 3 (ENCFF518MQA)\ parent encTfChipPk off\ shortLabel HCT116 CTCF 2\ subGroups cellType=HCT116 factor=CTCF\ track encTfChipPkENCFF518MQA\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_tpm_fwd Tc:ARPE-19Emt_01hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_forward 1 291 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep1.CNhs14475.13637-147A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13637-147A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_ctss_fwd Tc:ARPE-19Emt_01hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_forward 0 291 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep1.CNhs14475.13637-147A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13637-147A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF171SNH HCT116 CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in HCT116 from ENCODE 3 (ENCFF171SNH) 0 292 255 150 85 255 202 170 0 0 0 regulation 1 color 255,150,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in HCT116 from ENCODE 3 (ENCFF171SNH)\ parent encTfChipPk off\ shortLabel HCT116 CTCF 3\ subGroups cellType=HCT116 factor=CTCF\ track encTfChipPkENCFF171SNH\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_tpm_rev Tc:ARPE-19Emt_01hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_reverse 1 292 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep1.CNhs14475.13637-147A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13637-147A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_ctss_rev Tc:ARPE-19Emt_01hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_reverse 0 292 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep1.CNhs14475.13637-147A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13637-147A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF926EZW HCT116 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in HCT116 from ENCODE 3 (ENCFF926EZW) 0 293 255 150 85 255 202 170 0 0 0 regulation 1 color 255,150,85\ longLabel Transcription Factor ChIP-seq Peaks of EZH2 in HCT116 from ENCODE 3 (ENCFF926EZW)\ parent encTfChipPk off\ shortLabel HCT116 EZH2\ subGroups cellType=HCT116 factor=EZH2\ track encTfChipPkENCFF926EZW\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_tpm_fwd Tc:ARPE-19Emt_01hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_forward 1 293 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep2.CNhs14476.13638-147A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13638-147A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_ctss_fwd Tc:ARPE-19Emt_01hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_forward 0 293 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep2.CNhs14476.13638-147A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13638-147A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF998KDQ HCT116 JUND narrowPeak Transcription Factor ChIP-seq Peaks of JUND in HCT116 from ENCODE 3 (ENCFF998KDQ) 0 294 255 150 85 255 202 170 0 0 0 regulation 1 color 255,150,85\ longLabel Transcription Factor ChIP-seq Peaks of JUND in HCT116 from ENCODE 3 (ENCFF998KDQ)\ parent encTfChipPk off\ shortLabel HCT116 JUND\ subGroups cellType=HCT116 factor=JUND\ track encTfChipPkENCFF998KDQ\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_tpm_rev Tc:ARPE-19Emt_01hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_reverse 1 294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep2.CNhs14476.13638-147A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13638-147A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_ctss_rev Tc:ARPE-19Emt_01hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_reverse 0 294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep2.CNhs14476.13638-147A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13638-147A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF215SIC HCT116 ZFX narrowPeak Transcription Factor ChIP-seq Peaks of ZFX in HCT116 from ENCODE 3 (ENCFF215SIC) 0 295 255 150 85 255 202 170 0 0 0 regulation 1 color 255,150,85\ longLabel Transcription Factor ChIP-seq Peaks of ZFX in HCT116 from ENCODE 3 (ENCFF215SIC)\ parent encTfChipPk off\ shortLabel HCT116 ZFX\ subGroups cellType=HCT116 factor=ZFX\ track encTfChipPkENCFF215SIC\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_tpm_fwd Tc:ARPE-19Emt_01hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_forward 1 295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep3.CNhs14477.13639-147A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13639-147A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_ctss_fwd Tc:ARPE-19Emt_01hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_forward 0 295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep3.CNhs14477.13639-147A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13639-147A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF860DHS HEK293 TRIM28 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM28 in HEK293 from ENCODE 3 (ENCFF860DHS) 0 296 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TRIM28 in HEK293 from ENCODE 3 (ENCFF860DHS)\ parent encTfChipPk off\ shortLabel HEK293 TRIM28\ subGroups cellType=HEK293 factor=TRIM28\ track encTfChipPkENCFF860DHS\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_tpm_rev Tc:ARPE-19Emt_01hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_reverse 1 296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep3.CNhs14477.13639-147A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13639-147A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_ctss_rev Tc:ARPE-19Emt_01hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_reverse 0 296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep3.CNhs14477.13639-147A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13639-147A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_ctss_rev\ type bigWig\ 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shortLabel Tc:ARPE-19Emt_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF867WWZ HEK293T CTBP1 narrowPeak Transcription Factor ChIP-seq Peaks of CTBP1 in HEK293T from ENCODE 3 (ENCFF867WWZ) 0 300 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTBP1 in HEK293T from ENCODE 3 (ENCFF867WWZ)\ parent encTfChipPk off\ shortLabel HEK293T CTBP1\ subGroups cellType=HEK293T factor=CTBP1\ track encTfChipPkENCFF867WWZ\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_tpm_rev Tc:ARPE-19Emt_01hr20minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep2_CNhs14479_13641-147A5_reverse 1 300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep2.CNhs14479.13641-147A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep2_CNhs14479_13641-147A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13641-147A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_ctss_rev Tc:ARPE-19Emt_01hr20minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep2_CNhs14479_13641-147A5_reverse 0 300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep2.CNhs14479.13641-147A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep2_CNhs14479_13641-147A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13641-147A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF919JTO HEK293T ELF4 narrowPeak Transcription Factor ChIP-seq Peaks of ELF4 in HEK293T from ENCODE 3 (ENCFF919JTO) 0 301 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ELF4 in HEK293T from ENCODE 3 (ENCFF919JTO)\ parent encTfChipPk off\ shortLabel HEK293T ELF4\ subGroups cellType=HEK293T factor=ELF4\ track encTfChipPkENCFF919JTO\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_tpm_fwd Tc:ARPE-19Emt_01hr20minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_forward 1 301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep3.CNhs14480.13642-147A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13642-147A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_tpm_fwd\ type bigWig\ url 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url http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF514ZNN HEK293T FOXA1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in HEK293T from ENCODE 3 (ENCFF514ZNN) 0 302 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in HEK293T from ENCODE 3 (ENCFF514ZNN)\ parent encTfChipPk off\ shortLabel HEK293T FOXA1\ subGroups cellType=HEK293T factor=FOXA1\ track encTfChipPkENCFF514ZNN\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_tpm_rev Tc:ARPE-19Emt_01hr20minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_reverse 1 302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep3.CNhs14480.13642-147A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13642-147A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_ctss_rev Tc:ARPE-19Emt_01hr20minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_reverse 0 302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep3.CNhs14480.13642-147A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13642-147A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF959TZW HEK293T FOXK2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXK2 in HEK293T from ENCODE 3 (ENCFF959TZW) 0 303 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXK2 in HEK293T from ENCODE 3 (ENCFF959TZW)\ parent encTfChipPk off\ shortLabel HEK293T FOXK2\ subGroups cellType=HEK293T factor=FOXK2\ track encTfChipPkENCFF959TZW\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_tpm_fwd Tc:ARPE-19Emt_01hr40minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_forward 1 303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep1.CNhs14482.13643-147A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13643-147A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_ctss_fwd Tc:ARPE-19Emt_01hr40minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_forward 0 303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep1.CNhs14482.13643-147A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13643-147A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF685TME HEK293T FOXM1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXM1 in HEK293T from ENCODE 3 (ENCFF685TME) 0 304 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXM1 in HEK293T from ENCODE 3 (ENCFF685TME)\ parent encTfChipPk off\ shortLabel HEK293T FOXM1\ subGroups cellType=HEK293T factor=FOXM1\ track encTfChipPkENCFF685TME\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_tpm_rev Tc:ARPE-19Emt_01hr40minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_reverse 1 304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep1.CNhs14482.13643-147A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13643-147A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_ctss_rev Tc:ARPE-19Emt_01hr40minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_reverse 0 304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep1.CNhs14482.13643-147A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13643-147A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF156RLT HEK293T L3MBTL2 narrowPeak Transcription Factor ChIP-seq Peaks of L3MBTL2 in HEK293T from ENCODE 3 (ENCFF156RLT) 0 305 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of L3MBTL2 in HEK293T from ENCODE 3 (ENCFF156RLT)\ parent encTfChipPk off\ shortLabel HEK293T L3MBTL2\ subGroups cellType=HEK293T factor=L3MBTL2\ track encTfChipPkENCFF156RLT\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_tpm_fwd Tc:ARPE-19Emt_01hr40minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_forward 1 305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep2.CNhs14483.13644-147A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13644-147A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_ctss_fwd Tc:ARPE-19Emt_01hr40minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_forward 0 305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep2.CNhs14483.13644-147A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13644-147A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF939UTN HEK293T LEF1 narrowPeak Transcription Factor ChIP-seq Peaks of LEF1 in HEK293T from ENCODE 3 (ENCFF939UTN) 0 306 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of LEF1 in HEK293T from ENCODE 3 (ENCFF939UTN)\ parent encTfChipPk off\ shortLabel HEK293T LEF1\ subGroups cellType=HEK293T factor=LEF1\ track encTfChipPkENCFF939UTN\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_tpm_rev Tc:ARPE-19Emt_01hr40minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_reverse 1 306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep2.CNhs14483.13644-147A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13644-147A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_ctss_rev Tc:ARPE-19Emt_01hr40minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_reverse 0 306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep2.CNhs14483.13644-147A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13644-147A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF421INQ HEK293T NFRKB narrowPeak Transcription Factor ChIP-seq Peaks of NFRKB in HEK293T from ENCODE 3 (ENCFF421INQ) 0 307 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NFRKB in HEK293T from ENCODE 3 (ENCFF421INQ)\ parent encTfChipPk off\ shortLabel HEK293T NFRKB\ subGroups cellType=HEK293T factor=NFRKB\ track encTfChipPkENCFF421INQ\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_tpm_fwd Tc:ARPE-19Emt_01hr40minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_forward 1 307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep3.CNhs14484.13645-147A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13645-147A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_ctss_fwd Tc:ARPE-19Emt_01hr40minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_forward 0 307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep3.CNhs14484.13645-147A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13645-147A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF234WZT HEK293T PKNOX1 narrowPeak Transcription Factor ChIP-seq Peaks of PKNOX1 in HEK293T from ENCODE 3 (ENCFF234WZT) 0 308 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of PKNOX1 in HEK293T from ENCODE 3 (ENCFF234WZT)\ parent encTfChipPk off\ shortLabel HEK293T PKNOX1\ subGroups cellType=HEK293T factor=PKNOX1\ track encTfChipPkENCFF234WZT\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_tpm_rev Tc:ARPE-19Emt_01hr40minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_reverse 1 308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep3.CNhs14484.13645-147A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13645-147A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_ctss_rev Tc:ARPE-19Emt_01hr40minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_reverse 0 308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep3.CNhs14484.13645-147A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13645-147A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF532KPP HEK293T SP1 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in HEK293T from ENCODE 3 (ENCFF532KPP) 0 309 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SP1 in HEK293T from ENCODE 3 (ENCFF532KPP)\ parent encTfChipPk off\ shortLabel HEK293T SP1\ subGroups cellType=HEK293T factor=SP1\ track encTfChipPkENCFF532KPP\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_tpm_fwd Tc:ARPE-19Emt_02hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_forward 1 309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep1.CNhs14485.13646-147B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13646-147B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_ctss_fwd Tc:ARPE-19Emt_02hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_forward 0 309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep1.CNhs14485.13646-147B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13646-147B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF708RSP HEK293T SUZ12 narrowPeak Transcription Factor ChIP-seq Peaks of SUZ12 in HEK293T from ENCODE 3 (ENCFF708RSP) 0 310 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SUZ12 in HEK293T from ENCODE 3 (ENCFF708RSP)\ parent encTfChipPk off\ shortLabel HEK293T SUZ12\ subGroups cellType=HEK293T factor=SUZ12\ track encTfChipPkENCFF708RSP\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_tpm_rev Tc:ARPE-19Emt_02hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_reverse 1 310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep1.CNhs14485.13646-147B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13646-147B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_ctss_rev Tc:ARPE-19Emt_02hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_reverse 0 310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep1.CNhs14485.13646-147B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13646-147B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF829NNC HEK293T ZFX narrowPeak Transcription Factor ChIP-seq Peaks of ZFX in HEK293T from ENCODE 3 (ENCFF829NNC) 0 311 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZFX in HEK293T from ENCODE 3 (ENCFF829NNC)\ parent encTfChipPk off\ shortLabel HEK293T ZFX\ subGroups cellType=HEK293T factor=ZFX\ track encTfChipPkENCFF829NNC\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_tpm_fwd Tc:ARPE-19Emt_02hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_forward 1 311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep2.CNhs14486.13647-147B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13647-147B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_ctss_fwd Tc:ARPE-19Emt_02hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_forward 0 311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep2.CNhs14486.13647-147B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13647-147B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF817UEX HEK293T ZNF384 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF384 in HEK293T from ENCODE 3 (ENCFF817UEX) 0 312 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF384 in HEK293T from ENCODE 3 (ENCFF817UEX)\ parent encTfChipPk off\ shortLabel HEK293T ZNF384\ subGroups cellType=HEK293T factor=ZNF384\ track encTfChipPkENCFF817UEX\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_tpm_rev Tc:ARPE-19Emt_02hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_reverse 1 312 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep2.CNhs14486.13647-147B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13647-147B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_ctss_rev Tc:ARPE-19Emt_02hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_reverse 0 312 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep2.CNhs14486.13647-147B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13647-147B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF750KVF HFF-Myc CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in HFF-Myc from ENCODE 3 (ENCFF750KVF) 0 313 255 165 85 255 210 170 0 0 0 regulation 1 color 255,165,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in HFF-Myc from ENCODE 3 (ENCFF750KVF)\ parent encTfChipPk off\ shortLabel HFF-Myc CTCF\ subGroups cellType=HFF-Myc factor=CTCF\ track encTfChipPkENCFF750KVF\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_tpm_fwd Tc:ARPE-19Emt_02hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_forward 1 313 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep3.CNhs14487.13648-147B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13648-147B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_ctss_fwd Tc:ARPE-19Emt_02hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_forward 0 313 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep3.CNhs14487.13648-147B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13648-147B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF152JZK HL-60 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in HL-60 from ENCODE 3 (ENCFF152JZK) 0 314 85 124 255 170 189 255 0 0 0 regulation 1 color 85,124,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in HL-60 from ENCODE 3 (ENCFF152JZK)\ parent encTfChipPk off\ shortLabel HL-60 CTCF\ subGroups cellType=HL-60 factor=CTCF\ track encTfChipPkENCFF152JZK\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_tpm_rev Tc:ARPE-19Emt_02hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_reverse 1 314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep3.CNhs14487.13648-147B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13648-147B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_ctss_rev Tc:ARPE-19Emt_02hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_reverse 0 314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep3.CNhs14487.13648-147B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13648-147B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF564YAP HL-60 GABPA narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in HL-60 from ENCODE 3 (ENCFF564YAP) 0 315 85 124 255 170 189 255 0 0 0 regulation 1 color 85,124,255\ longLabel Transcription Factor ChIP-seq Peaks of GABPA in HL-60 from ENCODE 3 (ENCFF564YAP)\ parent encTfChipPk off\ shortLabel HL-60 GABPA\ subGroups cellType=HL-60 factor=GABPA\ track encTfChipPkENCFF564YAP\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_tpm_fwd Tc:ARPE-19Emt_02hr30minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_forward 1 315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep1.CNhs14488.13649-147B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13649-147B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_ctss_fwd Tc:ARPE-19Emt_02hr30minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_forward 0 315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep1.CNhs14488.13649-147B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13649-147B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF839LPE HL-60 REST narrowPeak Transcription Factor ChIP-seq Peaks of REST in HL-60 from ENCODE 3 (ENCFF839LPE) 0 316 85 124 255 170 189 255 0 0 0 regulation 1 color 85,124,255\ longLabel Transcription Factor ChIP-seq Peaks of REST in HL-60 from ENCODE 3 (ENCFF839LPE)\ parent encTfChipPk off\ shortLabel HL-60 REST\ subGroups cellType=HL-60 factor=REST\ track encTfChipPkENCFF839LPE\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_tpm_rev Tc:ARPE-19Emt_02hr30minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_reverse 1 316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep1.CNhs14488.13649-147B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13649-147B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_ctss_rev Tc:ARPE-19Emt_02hr30minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_reverse 0 316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep1.CNhs14488.13649-147B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13649-147B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF797QGP HL-60 SPI1 narrowPeak Transcription Factor ChIP-seq Peaks of SPI1 in HL-60 from ENCODE 3 (ENCFF797QGP) 0 317 85 124 255 170 189 255 0 0 0 regulation 1 color 85,124,255\ longLabel Transcription Factor ChIP-seq Peaks of SPI1 in HL-60 from ENCODE 3 (ENCFF797QGP)\ parent encTfChipPk off\ shortLabel HL-60 SPI1\ subGroups cellType=HL-60 factor=SPI1\ track encTfChipPkENCFF797QGP\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_tpm_fwd Tc:ARPE-19Emt_02hr30minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_forward 1 317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep2.CNhs14489.13650-147B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13650-147B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_ctss_fwd Tc:ARPE-19Emt_02hr30minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_forward 0 317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep2.CNhs14489.13650-147B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13650-147B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF260KLJ HeLa-S3 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in HeLa-S3 from ENCODE 3 (ENCFF260KLJ) 0 318 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of EZH2 in HeLa-S3 from ENCODE 3 (ENCFF260KLJ)\ parent encTfChipPk off\ shortLabel HeLa-S3 EZH2\ subGroups cellType=HeLa-S3 factor=EZH2\ track encTfChipPkENCFF260KLJ\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_tpm_rev Tc:ARPE-19Emt_02hr30minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_reverse 1 318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep2.CNhs14489.13650-147B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13650-147B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_ctss_rev Tc:ARPE-19Emt_02hr30minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_reverse 0 318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep2.CNhs14489.13650-147B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13650-147B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF091UDB HeLa-S3 GABPA narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in HeLa-S3 from ENCODE 3 (ENCFF091UDB) 0 319 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of GABPA in HeLa-S3 from ENCODE 3 (ENCFF091UDB)\ parent encTfChipPk on\ shortLabel HeLa-S3 GABPA\ subGroups cellType=HeLa-S3 factor=GABPA\ track encTfChipPkENCFF091UDB\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_tpm_fwd Tc:ARPE-19Emt_02hr30minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_forward 1 319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep3.CNhs14490.13651-147B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13651-147B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_ctss_fwd Tc:ARPE-19Emt_02hr30minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_forward 0 319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep3.CNhs14490.13651-147B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13651-147B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF672LKL HeLa-S3 MAFF narrowPeak Transcription Factor ChIP-seq Peaks of MAFF in HeLa-S3 from ENCODE 3 (ENCFF672LKL) 0 320 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MAFF in HeLa-S3 from ENCODE 3 (ENCFF672LKL)\ parent encTfChipPk off\ shortLabel HeLa-S3 MAFF\ subGroups cellType=HeLa-S3 factor=MAFF\ track encTfChipPkENCFF672LKL\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_tpm_rev Tc:ARPE-19Emt_02hr30minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_reverse 1 320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep3.CNhs14490.13651-147B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13651-147B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_ctss_rev Tc:ARPE-19Emt_02hr30minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_reverse 0 320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep3.CNhs14490.13651-147B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13651-147B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF328IZQ HeLa-S3 MAFK narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in HeLa-S3 from ENCODE 3 (ENCFF328IZQ) 0 321 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MAFK in HeLa-S3 from ENCODE 3 (ENCFF328IZQ)\ parent encTfChipPk on\ shortLabel HeLa-S3 MAFK\ subGroups cellType=HeLa-S3 factor=MAFK\ track encTfChipPkENCFF328IZQ\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_tpm_fwd Tc:ARPE-19Emt_03hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_forward 1 321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep1.CNhs14491.13652-147B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13652-147B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_ctss_fwd Tc:ARPE-19Emt_03hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_forward 0 321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep1.CNhs14491.13652-147B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13652-147B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF305KIK HeLa-S3 NFE2L2 narrowPeak Transcription Factor ChIP-seq Peaks of NFE2L2 in HeLa-S3 from ENCODE 3 (ENCFF305KIK) 0 322 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of NFE2L2 in HeLa-S3 from ENCODE 3 (ENCFF305KIK)\ parent encTfChipPk off\ shortLabel HeLa-S3 NFE2L2\ subGroups cellType=HeLa-S3 factor=NFE2L2\ track encTfChipPkENCFF305KIK\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_tpm_rev Tc:ARPE-19Emt_03hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_reverse 1 322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep1.CNhs14491.13652-147B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13652-147B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_ctss_rev Tc:ARPE-19Emt_03hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_reverse 0 322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep1.CNhs14491.13652-147B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13652-147B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF246QVY HeLa-S3 POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in HeLa-S3 from ENCODE 3 (ENCFF246QVY) 0 323 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in HeLa-S3 from ENCODE 3 (ENCFF246QVY)\ parent encTfChipPk off\ shortLabel HeLa-S3 POLR2A\ subGroups cellType=HeLa-S3 factor=POLR2A\ track encTfChipPkENCFF246QVY\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_tpm_fwd Tc:ARPE-19Emt_03hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_forward 1 323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep2.CNhs14492.13653-147B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13653-147B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_ctss_fwd Tc:ARPE-19Emt_03hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_forward 0 323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep2.CNhs14492.13653-147B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13653-147B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF208NUB HeLa-S3 REST narrowPeak Transcription Factor ChIP-seq Peaks of REST in HeLa-S3 from ENCODE 3 (ENCFF208NUB) 0 324 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of REST in HeLa-S3 from ENCODE 3 (ENCFF208NUB)\ parent encTfChipPk off\ shortLabel HeLa-S3 REST\ subGroups cellType=HeLa-S3 factor=REST\ track encTfChipPkENCFF208NUB\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_tpm_rev Tc:ARPE-19Emt_03hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_reverse 1 324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep2.CNhs14492.13653-147B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13653-147B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_ctss_rev Tc:ARPE-19Emt_03hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_reverse 0 324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep2.CNhs14492.13653-147B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13653-147B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF785YII HeLa-S3 SREBF2 narrowPeak Transcription Factor ChIP-seq Peaks of SREBF2 in HeLa-S3 from ENCODE 3 (ENCFF785YII) 0 325 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of SREBF2 in HeLa-S3 from ENCODE 3 (ENCFF785YII)\ parent encTfChipPk off\ shortLabel HeLa-S3 SREBF2\ subGroups cellType=HeLa-S3 factor=SREBF2\ track encTfChipPkENCFF785YII\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_tpm_fwd Tc:ARPE-19Emt_03hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_forward 1 325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep3.CNhs14493.13654-147B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13654-147B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_ctss_fwd Tc:ARPE-19Emt_03hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_forward 0 325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep3.CNhs14493.13654-147B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13654-147B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF044DFE HeLa-S3 SUPT20H narrowPeak Transcription Factor ChIP-seq Peaks of SUPT20H in HeLa-S3 from ENCODE 3 (ENCFF044DFE) 0 326 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of SUPT20H in HeLa-S3 from ENCODE 3 (ENCFF044DFE)\ parent encTfChipPk off\ shortLabel HeLa-S3 SUPT20H\ subGroups cellType=HeLa-S3 factor=SUPT20H\ track encTfChipPkENCFF044DFE\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_tpm_rev Tc:ARPE-19Emt_03hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_reverse 1 326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep3.CNhs14493.13654-147B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13654-147B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_ctss_rev Tc:ARPE-19Emt_03hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_reverse 0 326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep3.CNhs14493.13654-147B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13654-147B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF302RQH HeLa-S3 TBP narrowPeak Transcription Factor ChIP-seq Peaks of TBP in HeLa-S3 from ENCODE 3 (ENCFF302RQH) 0 327 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of TBP in HeLa-S3 from ENCODE 3 (ENCFF302RQH)\ parent encTfChipPk on\ shortLabel HeLa-S3 TBP\ subGroups cellType=HeLa-S3 factor=TBP\ track encTfChipPkENCFF302RQH\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_tpm_fwd Tc:ARPE-19Emt_03hr30minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_forward 1 327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep1.CNhs14494.13655-147C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13655-147C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_ctss_fwd Tc:ARPE-19Emt_03hr30minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_forward 0 327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep1.CNhs14494.13655-147C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13655-147C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF834LQR HeLa-S3 UBTF narrowPeak Transcription Factor ChIP-seq Peaks of UBTF in HeLa-S3 from ENCODE 3 (ENCFF834LQR) 0 328 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of UBTF in HeLa-S3 from ENCODE 3 (ENCFF834LQR)\ parent encTfChipPk off\ shortLabel HeLa-S3 UBTF\ subGroups cellType=HeLa-S3 factor=UBTF\ track encTfChipPkENCFF834LQR\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_tpm_rev Tc:ARPE-19Emt_03hr30minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_reverse 1 328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep1.CNhs14494.13655-147C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13655-147C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_ctss_rev Tc:ARPE-19Emt_03hr30minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_reverse 0 328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep1.CNhs14494.13655-147C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13655-147C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF267DZF HeLa-S3 ZHX1 narrowPeak Transcription Factor ChIP-seq Peaks of ZHX1 in HeLa-S3 from ENCODE 3 (ENCFF267DZF) 0 329 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZHX1 in HeLa-S3 from ENCODE 3 (ENCFF267DZF)\ parent encTfChipPk off\ shortLabel HeLa-S3 ZHX1\ subGroups cellType=HeLa-S3 factor=ZHX1\ track encTfChipPkENCFF267DZF\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_tpm_fwd Tc:ARPE-19Emt_03hr30minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_forward 1 329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep2.CNhs14495.13656-147C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13656-147C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_ctss_fwd Tc:ARPE-19Emt_03hr30minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_forward 0 329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep2.CNhs14495.13656-147C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13656-147C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF627BHP HepG2 AGO1 narrowPeak Transcription Factor ChIP-seq Peaks of AGO1 in HepG2 from ENCODE 3 (ENCFF627BHP) 0 330 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of AGO1 in HepG2 from ENCODE 3 (ENCFF627BHP)\ parent encTfChipPk off\ shortLabel HepG2 AGO1\ subGroups cellType=HepG2 factor=AGO1\ track encTfChipPkENCFF627BHP\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_tpm_rev Tc:ARPE-19Emt_03hr30minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_reverse 1 330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep2.CNhs14495.13656-147C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13656-147C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_ctss_rev Tc:ARPE-19Emt_03hr30minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_reverse 0 330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep2.CNhs14495.13656-147C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13656-147C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF465FII HepG2 AGO2 narrowPeak Transcription Factor ChIP-seq Peaks of AGO2 in HepG2 from ENCODE 3 (ENCFF465FII) 0 331 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of AGO2 in HepG2 from ENCODE 3 (ENCFF465FII)\ parent encTfChipPk off\ shortLabel HepG2 AGO2\ subGroups cellType=HepG2 factor=AGO2\ track encTfChipPkENCFF465FII\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_tpm_fwd Tc:ARPE-19Emt_03hr30minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_forward 1 331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep3.CNhs14496.13657-147C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13657-147C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_ctss_fwd Tc:ARPE-19Emt_03hr30minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_forward 0 331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep3.CNhs14496.13657-147C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13657-147C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF247GXE HepG2 ARID3A narrowPeak Transcription Factor ChIP-seq Peaks of ARID3A in HepG2 from ENCODE 3 (ENCFF247GXE) 0 332 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ARID3A in HepG2 from ENCODE 3 (ENCFF247GXE)\ parent encTfChipPk off\ shortLabel HepG2 ARID3A\ subGroups cellType=HepG2 factor=ARID3A\ track encTfChipPkENCFF247GXE\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_tpm_rev Tc:ARPE-19Emt_03hr30minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_reverse 1 332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep3.CNhs14496.13657-147C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13657-147C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_ctss_rev Tc:ARPE-19Emt_03hr30minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_reverse 0 332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep3.CNhs14496.13657-147C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13657-147C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF616WXJ HepG2 ARNT narrowPeak Transcription Factor ChIP-seq Peaks of ARNT in HepG2 from ENCODE 3 (ENCFF616WXJ) 0 333 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ARNT in HepG2 from ENCODE 3 (ENCFF616WXJ)\ parent encTfChipPk off\ shortLabel HepG2 ARNT\ subGroups cellType=HepG2 factor=ARNT\ track encTfChipPkENCFF616WXJ\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_tpm_fwd Tc:ARPE-19Emt_04hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_forward 1 333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep1.CNhs14497.13658-147C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13658-147C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_04hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_ctss_fwd Tc:ARPE-19Emt_04hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_forward 0 333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep1.CNhs14497.13658-147C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13658-147C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_04hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF638IUM HepG2 ASH2L narrowPeak Transcription Factor ChIP-seq Peaks of ASH2L in HepG2 from ENCODE 3 (ENCFF638IUM) 0 334 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ASH2L in HepG2 from ENCODE 3 (ENCFF638IUM)\ parent encTfChipPk off\ shortLabel HepG2 ASH2L\ subGroups cellType=HepG2 factor=ASH2L\ track encTfChipPkENCFF638IUM\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_tpm_rev Tc:ARPE-19Emt_04hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_reverse 1 334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep1.CNhs14497.13658-147C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13658-147C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_04hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_ctss_rev Tc:ARPE-19Emt_04hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_reverse 0 334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep1.CNhs14497.13658-147C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13658-147C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_04hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF089BQU HepG2 ATF2 narrowPeak Transcription Factor ChIP-seq Peaks of ATF2 in HepG2 from ENCODE 3 (ENCFF089BQU) 0 335 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ATF2 in HepG2 from ENCODE 3 (ENCFF089BQU)\ parent encTfChipPk off\ shortLabel HepG2 ATF2\ subGroups cellType=HepG2 factor=ATF2\ track encTfChipPkENCFF089BQU\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_tpm_fwd Tc:ARPE-19Emt_04hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_forward 1 335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep2.CNhs14498.13659-147C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13659-147C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_04hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_ctss_fwd Tc:ARPE-19Emt_04hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_forward 0 335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep2.CNhs14498.13659-147C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13659-147C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_04hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF137OEY HepG2 ATF3 narrowPeak Transcription Factor ChIP-seq Peaks of ATF3 in HepG2 from ENCODE 3 (ENCFF137OEY) 0 336 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ATF3 in HepG2 from ENCODE 3 (ENCFF137OEY)\ parent encTfChipPk off\ shortLabel HepG2 ATF3\ subGroups cellType=HepG2 factor=ATF3\ track encTfChipPkENCFF137OEY\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_tpm_rev Tc:ARPE-19Emt_04hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_reverse 1 336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep2.CNhs14498.13659-147C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13659-147C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_04hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_ctss_rev Tc:ARPE-19Emt_04hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_reverse 0 336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep2.CNhs14498.13659-147C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13659-147C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_04hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF498YGH HepG2 ATF7 narrowPeak Transcription Factor ChIP-seq Peaks of ATF7 in HepG2 from ENCODE 3 (ENCFF498YGH) 0 337 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ATF7 in HepG2 from ENCODE 3 (ENCFF498YGH)\ parent encTfChipPk off\ shortLabel HepG2 ATF7\ subGroups cellType=HepG2 factor=ATF7\ track encTfChipPkENCFF498YGH\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_tpm_fwd Tc:ARPE-19Emt_04hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_forward 1 337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep3.CNhs14499.13660-147C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13660-147C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_04hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_ctss_fwd Tc:ARPE-19Emt_04hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_forward 0 337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep3.CNhs14499.13660-147C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13660-147C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_04hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF906FVB HepG2 ATM narrowPeak Transcription Factor ChIP-seq Peaks of ATM in HepG2 from ENCODE 3 (ENCFF906FVB) 0 338 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ATM in HepG2 from ENCODE 3 (ENCFF906FVB)\ parent encTfChipPk off\ shortLabel HepG2 ATM\ subGroups cellType=HepG2 factor=ATM\ track encTfChipPkENCFF906FVB\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_tpm_rev Tc:ARPE-19Emt_04hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_reverse 1 338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep3.CNhs14499.13660-147C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13660-147C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_04hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_ctss_rev Tc:ARPE-19Emt_04hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_reverse 0 338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep3.CNhs14499.13660-147C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13660-147C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_04hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF863ATX HepG2 BHLHE40 1 narrowPeak Transcription Factor ChIP-seq Peaks of BHLHE40 in HepG2 from ENCODE 3 (ENCFF863ATX) 0 339 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of BHLHE40 in HepG2 from ENCODE 3 (ENCFF863ATX)\ parent encTfChipPk off\ shortLabel HepG2 BHLHE40 1\ subGroups cellType=HepG2 factor=BHLHE40\ track encTfChipPkENCFF863ATX\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_tpm_fwd Tc:ARPE-19Emt_05hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_forward 1 339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep1.CNhs14500.13661-147C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13661-147C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_05hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_ctss_fwd Tc:ARPE-19Emt_05hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_forward 0 339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep1.CNhs14500.13661-147C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13661-147C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_05hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF361YXC HepG2 BHLHE40 2 narrowPeak Transcription Factor ChIP-seq Peaks of BHLHE40 in HepG2 from ENCODE 3 (ENCFF361YXC) 0 340 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of BHLHE40 in HepG2 from ENCODE 3 (ENCFF361YXC)\ parent encTfChipPk off\ shortLabel HepG2 BHLHE40 2\ subGroups cellType=HepG2 factor=BHLHE40\ track encTfChipPkENCFF361YXC\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_tpm_rev Tc:ARPE-19Emt_05hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_reverse 1 340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep1.CNhs14500.13661-147C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13661-147C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_05hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_ctss_rev Tc:ARPE-19Emt_05hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_reverse 0 340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep1.CNhs14500.13661-147C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13661-147C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_05hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF897ETK HepG2 BRCA1 narrowPeak Transcription Factor ChIP-seq Peaks of BRCA1 in HepG2 from ENCODE 3 (ENCFF897ETK) 0 341 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of BRCA1 in HepG2 from ENCODE 3 (ENCFF897ETK)\ parent encTfChipPk off\ shortLabel HepG2 BRCA1\ subGroups cellType=HepG2 factor=BRCA1\ track encTfChipPkENCFF897ETK\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_tpm_fwd Tc:ARPE-19Emt_05hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_forward 1 341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep2.CNhs14501.13662-147C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13662-147C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_05hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_ctss_fwd Tc:ARPE-19Emt_05hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_forward 0 341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep2.CNhs14501.13662-147C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13662-147C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_05hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF736GHL HepG2 BRD4 narrowPeak Transcription Factor ChIP-seq Peaks of BRD4 in HepG2 from ENCODE 3 (ENCFF736GHL) 0 342 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of BRD4 in HepG2 from ENCODE 3 (ENCFF736GHL)\ parent encTfChipPk off\ shortLabel HepG2 BRD4\ subGroups cellType=HepG2 factor=BRD4\ track encTfChipPkENCFF736GHL\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_tpm_rev Tc:ARPE-19Emt_05hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_reverse 1 342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep2.CNhs14501.13662-147C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13662-147C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_05hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_ctss_rev Tc:ARPE-19Emt_05hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_reverse 0 342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep2.CNhs14501.13662-147C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13662-147C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_05hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF501QII HepG2 CBX2 narrowPeak Transcription Factor ChIP-seq Peaks of CBX2 in HepG2 from ENCODE 3 (ENCFF501QII) 0 343 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of CBX2 in HepG2 from ENCODE 3 (ENCFF501QII)\ parent encTfChipPk off\ shortLabel HepG2 CBX2\ subGroups cellType=HepG2 factor=CBX2\ track encTfChipPkENCFF501QII\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_tpm_fwd Tc:ARPE-19Emt_05hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_forward 1 343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep3.CNhs14518.13663-147C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13663-147C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_05hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_ctss_fwd Tc:ARPE-19Emt_05hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_forward 0 343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep3.CNhs14518.13663-147C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13663-147C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_05hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF039LHY HepG2 CCAR2 narrowPeak Transcription Factor ChIP-seq Peaks of CCAR2 in HepG2 from ENCODE 3 (ENCFF039LHY) 0 344 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of CCAR2 in HepG2 from ENCODE 3 (ENCFF039LHY)\ parent encTfChipPk off\ shortLabel HepG2 CCAR2\ subGroups cellType=HepG2 factor=CCAR2\ track encTfChipPkENCFF039LHY\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_tpm_rev Tc:ARPE-19Emt_05hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_reverse 1 344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep3.CNhs14518.13663-147C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13663-147C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_05hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_ctss_rev Tc:ARPE-19Emt_05hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_reverse 0 344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep3.CNhs14518.13663-147C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13663-147C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_05hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF862DXR HepG2 CEBPB 1 narrowPeak Transcription Factor ChIP-seq Peaks of CEBPB in HepG2 from ENCODE 3 (ENCFF862DXR) 0 345 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of CEBPB in HepG2 from ENCODE 3 (ENCFF862DXR)\ parent encTfChipPk off\ shortLabel HepG2 CEBPB 1\ subGroups cellType=HepG2 factor=CEBPB\ track encTfChipPkENCFF862DXR\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_tpm_fwd Tc:ARPE-19Emt_06hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_forward 1 345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep1.CNhs14519.13664-147D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13664-147D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_06hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_ctss_fwd Tc:ARPE-19Emt_06hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_forward 0 345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep1.CNhs14519.13664-147D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13664-147D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_06hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF915ZYE HepG2 CEBPB 2 narrowPeak Transcription Factor ChIP-seq Peaks of CEBPB in HepG2 from ENCODE 3 (ENCFF915ZYE) 0 346 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of CEBPB in HepG2 from ENCODE 3 (ENCFF915ZYE)\ parent encTfChipPk off\ shortLabel HepG2 CEBPB 2\ subGroups cellType=HepG2 factor=CEBPB\ track encTfChipPkENCFF915ZYE\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_tpm_rev Tc:ARPE-19Emt_06hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_reverse 1 346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep1.CNhs14519.13664-147D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13664-147D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_06hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_ctss_rev Tc:ARPE-19Emt_06hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_reverse 0 346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep1.CNhs14519.13664-147D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13664-147D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_06hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF148ABR HepG2 CHD4 narrowPeak Transcription Factor ChIP-seq Peaks of CHD4 in HepG2 from ENCODE 3 (ENCFF148ABR) 0 347 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of CHD4 in HepG2 from ENCODE 3 (ENCFF148ABR)\ parent encTfChipPk off\ shortLabel HepG2 CHD4\ subGroups cellType=HepG2 factor=CHD4\ track encTfChipPkENCFF148ABR\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_tpm_fwd Tc:ARPE-19Emt_06hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_forward 1 347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13666-147D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep3.CNhs14522.13666-147D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13666-147D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_06hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13666-147D3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_ctss_fwd Tc:ARPE-19Emt_06hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_forward 0 347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13666-147D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep3.CNhs14522.13666-147D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13666-147D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_06hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13666-147D3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF550TXR HepG2 CREB1 narrowPeak Transcription Factor ChIP-seq Peaks of CREB1 in HepG2 from ENCODE 3 (ENCFF550TXR) 0 348 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of CREB1 in HepG2 from ENCODE 3 (ENCFF550TXR)\ parent encTfChipPk off\ shortLabel HepG2 CREB1\ subGroups cellType=HepG2 factor=CREB1\ track encTfChipPkENCFF550TXR\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_tpm_rev Tc:ARPE-19Emt_06hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_reverse 1 348 0 0 255 127 127 255 0 0 0 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of CREM in HepG2 from ENCODE 3 (ENCFF290UGF)\ parent encTfChipPk off\ shortLabel HepG2 CREM\ subGroups cellType=HepG2 factor=CREM\ track encTfChipPkENCFF290UGF\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_tpm_fwd Tc:ARPE-19Emt_07hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_forward 1 349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep1.CNhs14523.13667-147D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13667-147D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_07hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_ctss_fwd Tc:ARPE-19Emt_07hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_forward 0 349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep1.CNhs14523.13667-147D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13667-147D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_07hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF543WTP HepG2 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in HepG2 from ENCODE 3 (ENCFF543WTP) 0 350 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in HepG2 from ENCODE 3 (ENCFF543WTP)\ parent encTfChipPk off\ shortLabel HepG2 CTCF\ subGroups cellType=HepG2 factor=CTCF\ track encTfChipPkENCFF543WTP\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_tpm_rev Tc:ARPE-19Emt_07hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_reverse 1 350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep1.CNhs14523.13667-147D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13667-147D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_07hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_ctss_rev Tc:ARPE-19Emt_07hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_reverse 0 350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep1.CNhs14523.13667-147D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13667-147D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_07hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF413RQL HepG2 EHMT2 narrowPeak Transcription Factor ChIP-seq Peaks of EHMT2 in HepG2 from ENCODE 3 (ENCFF413RQL) 0 351 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of EHMT2 in HepG2 from ENCODE 3 (ENCFF413RQL)\ parent encTfChipPk off\ shortLabel HepG2 EHMT2\ subGroups cellType=HepG2 factor=EHMT2\ track encTfChipPkENCFF413RQL\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_tpm_fwd Tc:ARPE-19Emt_07hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_forward 1 351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep2.CNhs14524.13668-147D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13668-147D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_07hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_ctss_fwd Tc:ARPE-19Emt_07hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_forward 0 351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep2.CNhs14524.13668-147D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13668-147D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_07hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF840RWO HepG2 ELF1 narrowPeak Transcription Factor ChIP-seq Peaks of ELF1 in HepG2 from ENCODE 3 (ENCFF840RWO) 0 352 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ELF1 in HepG2 from ENCODE 3 (ENCFF840RWO)\ parent encTfChipPk off\ shortLabel HepG2 ELF1\ subGroups cellType=HepG2 factor=ELF1\ track encTfChipPkENCFF840RWO\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_tpm_rev Tc:ARPE-19Emt_07hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_reverse 1 352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep2.CNhs14524.13668-147D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13668-147D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_07hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_ctss_rev Tc:ARPE-19Emt_07hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_reverse 0 352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep2.CNhs14524.13668-147D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13668-147D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_07hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF806JJS HepG2 EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in HepG2 from ENCODE 3 (ENCFF806JJS) 0 353 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of EP300 in HepG2 from ENCODE 3 (ENCFF806JJS)\ parent encTfChipPk off\ shortLabel HepG2 EP300 1\ subGroups cellType=HepG2 factor=EP300\ track encTfChipPkENCFF806JJS\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_tpm_fwd Tc:ARPE-19Emt_07hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_forward 1 353 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep3.CNhs14525.13669-147D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13669-147D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_07hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_ctss_fwd Tc:ARPE-19Emt_07hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_forward 0 353 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep3.CNhs14525.13669-147D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13669-147D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_07hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF674QCU HepG2 EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in HepG2 from ENCODE 3 (ENCFF674QCU) 0 354 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of EP300 in HepG2 from ENCODE 3 (ENCFF674QCU)\ parent encTfChipPk off\ shortLabel HepG2 EP300 2\ subGroups cellType=HepG2 factor=EP300\ track encTfChipPkENCFF674QCU\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_tpm_rev Tc:ARPE-19Emt_07hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_reverse 1 354 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep3.CNhs14525.13669-147D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13669-147D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_07hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_ctss_rev Tc:ARPE-19Emt_07hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_reverse 0 354 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep3.CNhs14525.13669-147D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13669-147D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_07hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF128TUP HepG2 ETS1 narrowPeak Transcription Factor ChIP-seq Peaks of ETS1 in HepG2 from ENCODE 3 (ENCFF128TUP) 0 355 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ETS1 in HepG2 from ENCODE 3 (ENCFF128TUP)\ parent encTfChipPk off\ shortLabel HepG2 ETS1\ subGroups cellType=HepG2 factor=ETS1\ track encTfChipPkENCFF128TUP\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_tpm_fwd Tc:ARPE-19Emt_08hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_forward 1 355 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep1.CNhs14526.13670-147D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13670-147D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_08hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_ctss_fwd Tc:ARPE-19Emt_08hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_forward 0 355 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep1.CNhs14526.13670-147D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13670-147D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_08hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF710CRT HepG2 ETV4 narrowPeak Transcription Factor ChIP-seq Peaks of ETV4 in HepG2 from ENCODE 3 (ENCFF710CRT) 0 356 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ETV4 in HepG2 from ENCODE 3 (ENCFF710CRT)\ parent encTfChipPk off\ shortLabel HepG2 ETV4\ subGroups cellType=HepG2 factor=ETV4\ track encTfChipPkENCFF710CRT\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_tpm_rev Tc:ARPE-19Emt_08hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_reverse 1 356 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep1.CNhs14526.13670-147D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13670-147D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_08hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track 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track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF504QZJ HepG2 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in HepG2 from ENCODE 3 (ENCFF504QZJ) 0 357 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of EZH2 in HepG2 from ENCODE 3 (ENCFF504QZJ)\ parent encTfChipPk off\ shortLabel HepG2 EZH2\ subGroups cellType=HepG2 factor=EZH2\ track encTfChipPkENCFF504QZJ\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_tpm_fwd Tc:ARPE-19Emt_08hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_forward 1 357 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep2.CNhs14527.13671-147D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13671-147D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_08hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_ctss_fwd Tc:ARPE-19Emt_08hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_forward 0 357 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep2.CNhs14527.13671-147D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13671-147D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_08hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF031LBW HepG2 FIP1L1 narrowPeak Transcription Factor ChIP-seq Peaks of FIP1L1 in HepG2 from ENCODE 3 (ENCFF031LBW) 0 358 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of FIP1L1 in HepG2 from ENCODE 3 (ENCFF031LBW)\ parent encTfChipPk off\ shortLabel HepG2 FIP1L1\ subGroups cellType=HepG2 factor=FIP1L1\ track encTfChipPkENCFF031LBW\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_tpm_rev Tc:ARPE-19Emt_08hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_reverse 1 358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep2.CNhs14527.13671-147D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13671-147D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_08hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_ctss_rev Tc:ARPE-19Emt_08hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_reverse 0 358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep2.CNhs14527.13671-147D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13671-147D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_08hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF054ESU HepG2 FOSL2 narrowPeak Transcription Factor ChIP-seq Peaks of FOSL2 in HepG2 from ENCODE 3 (ENCFF054ESU) 0 359 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of FOSL2 in HepG2 from ENCODE 3 (ENCFF054ESU)\ parent encTfChipPk off\ shortLabel HepG2 FOSL2\ subGroups cellType=HepG2 factor=FOSL2\ track encTfChipPkENCFF054ESU\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_tpm_fwd Tc:ARPE-19Emt_08hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_forward 1 359 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep3.CNhs14528.13672-147D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13672-147D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_08hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_ctss_fwd Tc:ARPE-19Emt_08hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_forward 0 359 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep3.CNhs14528.13672-147D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13672-147D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_08hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF152BOT HepG2 FOXA1 1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in HepG2 from ENCODE 3 (ENCFF152BOT) 0 360 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in HepG2 from ENCODE 3 (ENCFF152BOT)\ parent encTfChipPk on\ shortLabel HepG2 FOXA1 1\ subGroups cellType=HepG2 factor=FOXA1\ track encTfChipPkENCFF152BOT\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_tpm_rev Tc:ARPE-19Emt_08hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_reverse 1 360 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep3.CNhs14528.13672-147D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13672-147D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_08hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_ctss_rev Tc:ARPE-19Emt_08hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_reverse 0 360 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep3.CNhs14528.13672-147D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13672-147D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_08hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF872MGU HepG2 FOXA1 2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in HepG2 from ENCODE 3 (ENCFF872MGU) 0 361 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in HepG2 from ENCODE 3 (ENCFF872MGU)\ parent encTfChipPk off\ shortLabel HepG2 FOXA1 2\ subGroups cellType=HepG2 factor=FOXA1\ track encTfChipPkENCFF872MGU\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_tpm_fwd Tc:ARPE-19Emt_12hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_forward 1 361 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep2.CNhs14530.13674-147E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13674-147E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_12hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_ctss_fwd Tc:ARPE-19Emt_12hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_forward 0 361 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep2.CNhs14530.13674-147E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13674-147E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_12hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF367TQC HepG2 FOXA1 3 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in HepG2 from ENCODE 3 (ENCFF367TQC) 0 362 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in HepG2 from ENCODE 3 (ENCFF367TQC)\ parent encTfChipPk off\ shortLabel HepG2 FOXA1 3\ subGroups cellType=HepG2 factor=FOXA1\ track encTfChipPkENCFF367TQC\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_tpm_rev Tc:ARPE-19Emt_12hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_reverse 1 362 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep2.CNhs14530.13674-147E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13674-147E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_12hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_ctss_rev Tc:ARPE-19Emt_12hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_reverse 0 362 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep2.CNhs14530.13674-147E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13674-147E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_12hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF184NAC HepG2 FOXA2 1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA2 in HepG2 from ENCODE 3 (ENCFF184NAC) 0 363 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of FOXA2 in HepG2 from ENCODE 3 (ENCFF184NAC)\ parent encTfChipPk off\ shortLabel HepG2 FOXA2 1\ subGroups cellType=HepG2 factor=FOXA2\ track encTfChipPkENCFF184NAC\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_tpm_fwd Tc:ARPE-19Emt_12hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_forward 1 363 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep3.CNhs14531.13675-147E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13675-147E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_12hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_ctss_fwd Tc:ARPE-19Emt_12hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_forward 0 363 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep3.CNhs14531.13675-147E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13675-147E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_12hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF259BJR HepG2 FOXA2 2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA2 in HepG2 from ENCODE 3 (ENCFF259BJR) 0 364 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of FOXA2 in HepG2 from ENCODE 3 (ENCFF259BJR)\ parent encTfChipPk off\ shortLabel HepG2 FOXA2 2\ subGroups cellType=HepG2 factor=FOXA2\ track encTfChipPkENCFF259BJR\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_tpm_rev Tc:ARPE-19Emt_12hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_reverse 1 364 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep3.CNhs14531.13675-147E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13675-147E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_12hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_ctss_rev Tc:ARPE-19Emt_12hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_reverse 0 364 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep3.CNhs14531.13675-147E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13675-147E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_12hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF315CHX HepG2 FOXK2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXK2 in HepG2 from ENCODE 3 (ENCFF315CHX) 0 365 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of FOXK2 in HepG2 from ENCODE 3 (ENCFF315CHX)\ parent encTfChipPk off\ shortLabel HepG2 FOXK2\ subGroups cellType=HepG2 factor=FOXK2\ track encTfChipPkENCFF315CHX\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_tpm_fwd Tc:ARPE-19Emt_16hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_forward 1 365 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep1.CNhs14532.13676-147E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13676-147E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_16hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_ctss_fwd Tc:ARPE-19Emt_16hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_forward 0 365 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep1.CNhs14532.13676-147E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13676-147E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_16hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF029UJC HepG2 FOXP1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXP1 in HepG2 from ENCODE 3 (ENCFF029UJC) 0 366 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of FOXP1 in HepG2 from ENCODE 3 (ENCFF029UJC)\ parent encTfChipPk off\ shortLabel HepG2 FOXP1\ subGroups cellType=HepG2 factor=FOXP1\ track encTfChipPkENCFF029UJC\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_tpm_rev Tc:ARPE-19Emt_16hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_reverse 1 366 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep1.CNhs14532.13676-147E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13676-147E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_16hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_ctss_rev Tc:ARPE-19Emt_16hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_reverse 0 366 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep1.CNhs14532.13676-147E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13676-147E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_16hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF216YZI HepG2 FUS narrowPeak Transcription Factor ChIP-seq Peaks of FUS in HepG2 from ENCODE 3 (ENCFF216YZI) 0 367 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of FUS in HepG2 from ENCODE 3 (ENCFF216YZI)\ parent encTfChipPk off\ shortLabel HepG2 FUS\ subGroups cellType=HepG2 factor=FUS\ track encTfChipPkENCFF216YZI\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_tpm_fwd Tc:ARPE-19Emt_16hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_forward 1 367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep2.CNhs14533.13677-147E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13677-147E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_16hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_ctss_fwd Tc:ARPE-19Emt_16hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_forward 0 367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep2.CNhs14533.13677-147E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13677-147E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_16hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF054HJA HepG2 GABPA narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in HepG2 from ENCODE 3 (ENCFF054HJA) 0 368 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of GABPA in HepG2 from ENCODE 3 (ENCFF054HJA)\ parent encTfChipPk off\ shortLabel HepG2 GABPA\ subGroups cellType=HepG2 factor=GABPA\ track encTfChipPkENCFF054HJA\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_tpm_rev Tc:ARPE-19Emt_16hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_reverse 1 368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep2.CNhs14533.13677-147E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13677-147E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_16hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_ctss_rev Tc:ARPE-19Emt_16hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_reverse 0 368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep2.CNhs14533.13677-147E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13677-147E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_16hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF097OXR HepG2 GATA4 narrowPeak Transcription Factor ChIP-seq Peaks of GATA4 in HepG2 from ENCODE 3 (ENCFF097OXR) 0 369 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of GATA4 in HepG2 from ENCODE 3 (ENCFF097OXR)\ parent encTfChipPk off\ shortLabel HepG2 GATA4\ subGroups cellType=HepG2 factor=GATA4\ track encTfChipPkENCFF097OXR\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_tpm_fwd Tc:ARPE-19Emt_16hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_forward 1 369 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep3.CNhs14534.13678-147E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13678-147E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_16hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_ctss_fwd Tc:ARPE-19Emt_16hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_forward 0 369 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep3.CNhs14534.13678-147E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13678-147E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_16hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF485SRU HepG2 HCFC1 narrowPeak Transcription Factor ChIP-seq Peaks of HCFC1 in HepG2 from ENCODE 3 (ENCFF485SRU) 0 370 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HCFC1 in HepG2 from ENCODE 3 (ENCFF485SRU)\ parent encTfChipPk off\ shortLabel HepG2 HCFC1\ subGroups cellType=HepG2 factor=HCFC1\ track encTfChipPkENCFF485SRU\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_tpm_rev Tc:ARPE-19Emt_16hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_reverse 1 370 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep3.CNhs14534.13678-147E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13678-147E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_16hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_ctss_rev Tc:ARPE-19Emt_16hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_reverse 0 370 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep3.CNhs14534.13678-147E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13678-147E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_16hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF069KPS HepG2 HDAC1 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC1 in HepG2 from ENCODE 3 (ENCFF069KPS) 0 371 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HDAC1 in HepG2 from ENCODE 3 (ENCFF069KPS)\ parent encTfChipPk off\ shortLabel HepG2 HDAC1\ subGroups cellType=HepG2 factor=HDAC1\ track encTfChipPkENCFF069KPS\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_tpm_fwd Tc:ARPE-19Emt_24hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_forward 1 371 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep1.CNhs14535.13679-147E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13679-147E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_24hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_ctss_fwd Tc:ARPE-19Emt_24hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_forward 0 371 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep1.CNhs14535.13679-147E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13679-147E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_24hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF589GSN HepG2 HDAC2 1 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in HepG2 from ENCODE 3 (ENCFF589GSN) 0 372 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in HepG2 from ENCODE 3 (ENCFF589GSN)\ parent encTfChipPk off\ shortLabel HepG2 HDAC2 1\ subGroups cellType=HepG2 factor=HDAC2\ track encTfChipPkENCFF589GSN\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_tpm_rev Tc:ARPE-19Emt_24hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_reverse 1 372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep1.CNhs14535.13679-147E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13679-147E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_24hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_ctss_rev Tc:ARPE-19Emt_24hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_reverse 0 372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep1.CNhs14535.13679-147E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13679-147E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_24hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF182XZZ HepG2 HDAC2 2 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in HepG2 from ENCODE 3 (ENCFF182XZZ) 0 373 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in HepG2 from ENCODE 3 (ENCFF182XZZ)\ parent encTfChipPk off\ shortLabel HepG2 HDAC2 2\ subGroups cellType=HepG2 factor=HDAC2\ track encTfChipPkENCFF182XZZ\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_tpm_fwd Tc:ARPE-19Emt_24hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_forward 1 373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep3.CNhs14537.13681-147E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13681-147E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_24hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_ctss_fwd Tc:ARPE-19Emt_24hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_forward 0 373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep3.CNhs14537.13681-147E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13681-147E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_24hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF109EXK HepG2 HDAC6 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC6 in HepG2 from ENCODE 3 (ENCFF109EXK) 0 374 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HDAC6 in HepG2 from ENCODE 3 (ENCFF109EXK)\ parent encTfChipPk off\ shortLabel HepG2 HDAC6\ subGroups cellType=HepG2 factor=HDAC6\ track encTfChipPkENCFF109EXK\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_tpm_rev Tc:ARPE-19Emt_24hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_reverse 1 374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep3.CNhs14537.13681-147E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13681-147E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_24hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_ctss_rev Tc:ARPE-19Emt_24hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_reverse 0 374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep3.CNhs14537.13681-147E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13681-147E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_24hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF800QTO HepG2 HNF1A narrowPeak Transcription Factor ChIP-seq Peaks of HNF1A in HepG2 from ENCODE 3 (ENCFF800QTO) 0 375 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HNF1A in HepG2 from ENCODE 3 (ENCFF800QTO)\ parent encTfChipPk off\ shortLabel HepG2 HNF1A\ subGroups cellType=HepG2 factor=HNF1A\ track encTfChipPkENCFF800QTO\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_tpm_fwd Tc:ARPE-19Emt_42hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_forward 1 375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep1.CNhs14538.13682-147F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13682-147F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_42hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_ctss_fwd Tc:ARPE-19Emt_42hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_forward 0 375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep1.CNhs14538.13682-147F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13682-147F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_42hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF072CXB HepG2 HNF4A narrowPeak Transcription Factor ChIP-seq Peaks of HNF4A in HepG2 from ENCODE 3 (ENCFF072CXB) 0 376 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HNF4A in HepG2 from ENCODE 3 (ENCFF072CXB)\ parent encTfChipPk off\ shortLabel HepG2 HNF4A\ subGroups cellType=HepG2 factor=HNF4A\ track encTfChipPkENCFF072CXB\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_tpm_rev Tc:ARPE-19Emt_42hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_reverse 1 376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep1.CNhs14538.13682-147F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13682-147F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_42hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_ctss_rev Tc:ARPE-19Emt_42hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_reverse 0 376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep1.CNhs14538.13682-147F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13682-147F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_42hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF086CTA HepG2 HNF4G narrowPeak Transcription Factor ChIP-seq Peaks of HNF4G in HepG2 from ENCODE 3 (ENCFF086CTA) 0 377 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HNF4G in HepG2 from ENCODE 3 (ENCFF086CTA)\ parent encTfChipPk off\ shortLabel HepG2 HNF4G\ subGroups cellType=HepG2 factor=HNF4G\ track encTfChipPkENCFF086CTA\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_tpm_fwd Tc:ARPE-19Emt_42hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_forward 1 377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep2.CNhs14539.13683-147F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13683-147F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_42hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_ctss_fwd Tc:ARPE-19Emt_42hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_forward 0 377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep2.CNhs14539.13683-147F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13683-147F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_42hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF046NUR HepG2 HNRNPH1 narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPH1 in HepG2 from ENCODE 3 (ENCFF046NUR) 0 378 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPH1 in HepG2 from ENCODE 3 (ENCFF046NUR)\ parent encTfChipPk off\ shortLabel HepG2 HNRNPH1\ subGroups cellType=HepG2 factor=HNRNPH1\ track encTfChipPkENCFF046NUR\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_tpm_rev Tc:ARPE-19Emt_42hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_reverse 1 378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep2.CNhs14539.13683-147F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13683-147F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_42hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_ctss_rev Tc:ARPE-19Emt_42hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_reverse 0 378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep2.CNhs14539.13683-147F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13683-147F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_42hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF828KXG HepG2 HNRNPK narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPK in HepG2 from ENCODE 3 (ENCFF828KXG) 0 379 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPK in HepG2 from ENCODE 3 (ENCFF828KXG)\ parent encTfChipPk off\ shortLabel HepG2 HNRNPK\ subGroups cellType=HepG2 factor=HNRNPK\ track encTfChipPkENCFF828KXG\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_tpm_fwd Tc:ARPE-19Emt_42hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_forward 1 379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep3.CNhs14540.13684-147F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13684-147F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_42hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_ctss_fwd Tc:ARPE-19Emt_42hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_forward 0 379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep3.CNhs14540.13684-147F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13684-147F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_42hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF039CUI HepG2 HNRNPL narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPL in HepG2 from ENCODE 3 (ENCFF039CUI) 0 380 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPL in HepG2 from ENCODE 3 (ENCFF039CUI)\ parent encTfChipPk off\ shortLabel HepG2 HNRNPL\ subGroups cellType=HepG2 factor=HNRNPL\ track encTfChipPkENCFF039CUI\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_tpm_rev Tc:ARPE-19Emt_42hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_reverse 1 380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep3.CNhs14540.13684-147F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13684-147F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_42hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_ctss_rev Tc:ARPE-19Emt_42hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_reverse 0 380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep3.CNhs14540.13684-147F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13684-147F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_42hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF890KTX HepG2 HNRNPLL narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPLL in HepG2 from ENCODE 3 (ENCFF890KTX) 0 381 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPLL in HepG2 from ENCODE 3 (ENCFF890KTX)\ parent encTfChipPk off\ shortLabel HepG2 HNRNPLL\ subGroups cellType=HepG2 factor=HNRNPLL\ track encTfChipPkENCFF890KTX\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_tpm_fwd Tc:ARPE-19Emt_60hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_forward 1 381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep1.CNhs14541.13685-147F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13685-147F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_60hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_ctss_fwd Tc:ARPE-19Emt_60hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_forward 0 381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep1.CNhs14541.13685-147F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13685-147F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_60hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF509YFF HepG2 HNRNPUL1 narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPUL1 in HepG2 from ENCODE 3 (ENCFF509YFF) 0 382 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPUL1 in HepG2 from ENCODE 3 (ENCFF509YFF)\ parent encTfChipPk off\ shortLabel HepG2 HNRNPUL1\ subGroups cellType=HepG2 factor=HNRNPUL1\ track encTfChipPkENCFF509YFF\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_tpm_rev Tc:ARPE-19Emt_60hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_reverse 1 382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep1.CNhs14541.13685-147F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13685-147F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_60hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_ctss_rev Tc:ARPE-19Emt_60hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_reverse 0 382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep1.CNhs14541.13685-147F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13685-147F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_60hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF969BZA HepG2 IKZF1 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF1 in HepG2 from ENCODE 3 (ENCFF969BZA) 0 383 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of IKZF1 in HepG2 from ENCODE 3 (ENCFF969BZA)\ parent encTfChipPk off\ shortLabel HepG2 IKZF1\ subGroups cellType=HepG2 factor=IKZF1\ track encTfChipPkENCFF969BZA\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_tpm_fwd Tc:ARPE-19Emt_60hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_forward 1 383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep2.CNhs14542.13686-147F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13686-147F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_60hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_ctss_fwd Tc:ARPE-19Emt_60hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_forward 0 383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep2.CNhs14542.13686-147F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13686-147F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_60hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF430PEI HepG2 JUND 1 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in HepG2 from ENCODE 3 (ENCFF430PEI) 0 384 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of JUND in HepG2 from ENCODE 3 (ENCFF430PEI)\ parent encTfChipPk off\ shortLabel HepG2 JUND 1\ subGroups cellType=HepG2 factor=JUND\ track encTfChipPkENCFF430PEI\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_tpm_rev Tc:ARPE-19Emt_60hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_reverse 1 384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep2.CNhs14542.13686-147F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13686-147F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_60hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_ctss_rev Tc:ARPE-19Emt_60hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_reverse 0 384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep2.CNhs14542.13686-147F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13686-147F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_60hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF539GRW HepG2 JUND 2 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in HepG2 from ENCODE 3 (ENCFF539GRW) 0 385 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of JUND in HepG2 from ENCODE 3 (ENCFF539GRW)\ parent encTfChipPk off\ shortLabel HepG2 JUND 2\ subGroups cellType=HepG2 factor=JUND\ track encTfChipPkENCFF539GRW\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_tpm_fwd Tc:ARPE-19Emt_60hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_forward 1 385 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep3.CNhs14543.13687-147F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13687-147F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_60hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_ctss_fwd Tc:ARPE-19Emt_60hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_forward 0 385 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep3.CNhs14543.13687-147F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13687-147F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_60hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF091BEK HepG2 KAT2B narrowPeak Transcription Factor ChIP-seq Peaks of KAT2B in HepG2 from ENCODE 3 (ENCFF091BEK) 0 386 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of KAT2B in HepG2 from ENCODE 3 (ENCFF091BEK)\ parent encTfChipPk off\ shortLabel HepG2 KAT2B\ subGroups cellType=HepG2 factor=KAT2B\ track encTfChipPkENCFF091BEK\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_tpm_rev Tc:ARPE-19Emt_60hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_reverse 1 386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep3.CNhs14543.13687-147F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13687-147F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_60hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_ctss_rev Tc:ARPE-19Emt_60hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_reverse 0 386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep3.CNhs14543.13687-147F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13687-147F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_60hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF768FGG HepG2 KDM1A narrowPeak Transcription Factor ChIP-seq Peaks of KDM1A in HepG2 from ENCODE 3 (ENCFF768FGG) 0 387 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of KDM1A in HepG2 from ENCODE 3 (ENCFF768FGG)\ parent encTfChipPk off\ shortLabel HepG2 KDM1A\ subGroups cellType=HepG2 factor=KDM1A\ track encTfChipPkENCFF768FGG\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_tpm_fwd Tc:iPStoNeuronDs_Day00R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_forward 1 387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep1.CNhs13830.13445-144F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13445-144F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_ctss_fwd Tc:iPStoNeuronDs_Day00R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_forward 0 387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep1.CNhs13830.13445-144F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13445-144F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF334HKG HepG2 KDM5A narrowPeak Transcription Factor ChIP-seq Peaks of KDM5A in HepG2 from ENCODE 3 (ENCFF334HKG) 0 388 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of KDM5A in HepG2 from ENCODE 3 (ENCFF334HKG)\ parent encTfChipPk off\ shortLabel HepG2 KDM5A\ subGroups cellType=HepG2 factor=KDM5A\ track encTfChipPkENCFF334HKG\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_tpm_rev Tc:iPStoNeuronDs_Day00R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_reverse 1 388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep1.CNhs13830.13445-144F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13445-144F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_ctss_rev Tc:iPStoNeuronDs_Day00R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_reverse 0 388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep1.CNhs13830.13445-144F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13445-144F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF611PIO HepG2 LCORL narrowPeak Transcription Factor ChIP-seq Peaks of LCORL in HepG2 from ENCODE 3 (ENCFF611PIO) 0 389 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of LCORL in HepG2 from ENCODE 3 (ENCFF611PIO)\ parent encTfChipPk off\ shortLabel HepG2 LCORL\ subGroups cellType=HepG2 factor=LCORL\ track encTfChipPkENCFF611PIO\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_tpm_fwd Tc:iPStoNeuronDs_Day00R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_forward 1 389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep2.CNhs13843.13449-144G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13449-144G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_ctss_fwd Tc:iPStoNeuronDs_Day00R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_forward 0 389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep2.CNhs13843.13449-144G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13449-144G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF493TIR HepG2 MAFF narrowPeak Transcription Factor ChIP-seq Peaks of MAFF in HepG2 from ENCODE 3 (ENCFF493TIR) 0 390 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of MAFF in HepG2 from ENCODE 3 (ENCFF493TIR)\ parent encTfChipPk off\ shortLabel HepG2 MAFF\ subGroups cellType=HepG2 factor=MAFF\ track encTfChipPkENCFF493TIR\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_tpm_rev Tc:iPStoNeuronDs_Day00R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_reverse 1 390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep2.CNhs13843.13449-144G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13449-144G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_ctss_rev Tc:iPStoNeuronDs_Day00R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_reverse 0 390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep2.CNhs13843.13449-144G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13449-144G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF770TZL HepG2 MAFK 1 narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in HepG2 from ENCODE 3 (ENCFF770TZL) 0 391 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of MAFK in HepG2 from ENCODE 3 (ENCFF770TZL)\ parent encTfChipPk off\ shortLabel HepG2 MAFK 1\ subGroups cellType=HepG2 factor=MAFK\ track encTfChipPkENCFF770TZL\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_tpm_fwd Tc:iPStoNeuronDs_Day00R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_forward 1 391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep3.CNhs14056.13453-144G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13453-144G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_ctss_fwd Tc:iPStoNeuronDs_Day00R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_forward 0 391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep3.CNhs14056.13453-144G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13453-144G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF171OJF HepG2 MAFK 2 narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in HepG2 from ENCODE 3 (ENCFF171OJF) 0 392 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of MAFK in HepG2 from ENCODE 3 (ENCFF171OJF)\ parent encTfChipPk off\ shortLabel HepG2 MAFK 2\ subGroups cellType=HepG2 factor=MAFK\ track encTfChipPkENCFF171OJF\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_tpm_rev Tc:iPStoNeuronDs_Day00R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_reverse 1 392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep3.CNhs14056.13453-144G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13453-144G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_ctss_rev Tc:iPStoNeuronDs_Day00R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_reverse 0 392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep3.CNhs14056.13453-144G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13453-144G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF140PUO HepG2 MAX narrowPeak Transcription Factor ChIP-seq Peaks of MAX in HepG2 from ENCODE 3 (ENCFF140PUO) 0 393 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of MAX in HepG2 from ENCODE 3 (ENCFF140PUO)\ parent encTfChipPk off\ shortLabel HepG2 MAX\ subGroups cellType=HepG2 factor=MAX\ track encTfChipPkENCFF140PUO\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_tpm_fwd Tc:iPStoNeuronDs_Day06R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_forward 1 393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep1.CNhs13831.13446-144F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13446-144F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_ctss_fwd Tc:iPStoNeuronDs_Day06R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_forward 0 393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep1.CNhs13831.13446-144F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13446-144F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF562FMQ HepG2 MNT 1 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in HepG2 from ENCODE 3 (ENCFF562FMQ) 0 394 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of MNT in HepG2 from ENCODE 3 (ENCFF562FMQ)\ parent encTfChipPk off\ shortLabel HepG2 MNT 1\ subGroups cellType=HepG2 factor=MNT\ track encTfChipPkENCFF562FMQ\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_tpm_rev Tc:iPStoNeuronDs_Day06R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_reverse 1 394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep1.CNhs13831.13446-144F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13446-144F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_ctss_rev Tc:iPStoNeuronDs_Day06R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_reverse 0 394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep1.CNhs13831.13446-144F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13446-144F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF482JSR HepG2 MNT 2 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in HepG2 from ENCODE 3 (ENCFF482JSR) 0 395 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of MNT in HepG2 from ENCODE 3 (ENCFF482JSR)\ parent encTfChipPk off\ shortLabel HepG2 MNT 2\ subGroups cellType=HepG2 factor=MNT\ track encTfChipPkENCFF482JSR\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_tpm_fwd Tc:iPStoNeuronDs_Day06R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_forward 1 395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep2.CNhs13844.13450-144G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13450-144G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_ctss_fwd Tc:iPStoNeuronDs_Day06R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_forward 0 395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep2.CNhs13844.13450-144G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13450-144G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF516UWH HepG2 NBN narrowPeak Transcription Factor ChIP-seq Peaks of NBN in HepG2 from ENCODE 3 (ENCFF516UWH) 0 396 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of NBN in HepG2 from ENCODE 3 (ENCFF516UWH)\ parent encTfChipPk off\ shortLabel HepG2 NBN\ subGroups cellType=HepG2 factor=NBN\ track encTfChipPkENCFF516UWH\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_tpm_rev Tc:iPStoNeuronDs_Day06R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_reverse 1 396 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep2.CNhs13844.13450-144G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13450-144G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_ctss_rev Tc:iPStoNeuronDs_Day06R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_reverse 0 396 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep2.CNhs13844.13450-144G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13450-144G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF616RSZ HepG2 NCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of NCOR1 in HepG2 from ENCODE 3 (ENCFF616RSZ) 0 397 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of NCOR1 in HepG2 from ENCODE 3 (ENCFF616RSZ)\ parent encTfChipPk off\ shortLabel HepG2 NCOR1\ subGroups cellType=HepG2 factor=NCOR1\ track encTfChipPkENCFF616RSZ\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_tpm_fwd Tc:iPStoNeuronDs_Day06R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_forward 1 397 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep3.CNhs14057.13454-144G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13454-144G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_ctss_fwd Tc:iPStoNeuronDs_Day06R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_forward 0 397 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep3.CNhs14057.13454-144G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13454-144G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF882YLO HepG2 NFE2L2 narrowPeak Transcription Factor ChIP-seq Peaks of NFE2L2 in HepG2 from ENCODE 3 (ENCFF882YLO) 0 398 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of NFE2L2 in HepG2 from ENCODE 3 (ENCFF882YLO)\ parent encTfChipPk off\ shortLabel HepG2 NFE2L2\ subGroups cellType=HepG2 factor=NFE2L2\ track encTfChipPkENCFF882YLO\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_tpm_rev Tc:iPStoNeuronDs_Day06R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_reverse 1 398 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep3.CNhs14057.13454-144G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13454-144G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_ctss_rev Tc:iPStoNeuronDs_Day06R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_reverse 0 398 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep3.CNhs14057.13454-144G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13454-144G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF162TPR HepG2 NFRKB narrowPeak Transcription Factor ChIP-seq Peaks of NFRKB in HepG2 from ENCODE 3 (ENCFF162TPR) 0 399 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of NFRKB in HepG2 from ENCODE 3 (ENCFF162TPR)\ parent encTfChipPk off\ shortLabel HepG2 NFRKB\ subGroups cellType=HepG2 factor=NFRKB\ track encTfChipPkENCFF162TPR\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_tpm_fwd Tc:iPStoNeuronDs_Day12R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_forward 1 399 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep1.CNhs13832.13447-144F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13447-144F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_ctss_fwd Tc:iPStoNeuronDs_Day12R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_forward 0 399 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep1.CNhs13832.13447-144F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13447-144F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF350CKI HepG2 NR2F6 narrowPeak Transcription Factor ChIP-seq Peaks of NR2F6 in HepG2 from ENCODE 3 (ENCFF350CKI) 0 400 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of NR2F6 in HepG2 from ENCODE 3 (ENCFF350CKI)\ parent encTfChipPk off\ shortLabel HepG2 NR2F6\ subGroups cellType=HepG2 factor=NR2F6\ track encTfChipPkENCFF350CKI\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_tpm_rev Tc:iPStoNeuronDs_Day12R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_reverse 1 400 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep1.CNhs13832.13447-144F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13447-144F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_ctss_rev Tc:iPStoNeuronDs_Day12R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_reverse 0 400 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep1.CNhs13832.13447-144F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13447-144F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF418DKQ HepG2 NRF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in HepG2 from ENCODE 3 (ENCFF418DKQ) 0 401 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in HepG2 from ENCODE 3 (ENCFF418DKQ)\ parent encTfChipPk off\ shortLabel HepG2 NRF1 1\ subGroups cellType=HepG2 factor=NRF1\ track encTfChipPkENCFF418DKQ\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_tpm_fwd Tc:iPStoNeuronDs_Day12R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_forward 1 401 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep2.CNhs13845.13451-144G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13451-144G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_ctss_fwd Tc:iPStoNeuronDs_Day12R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_forward 0 401 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep2.CNhs13845.13451-144G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13451-144G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF313RFR HepG2 NRF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in HepG2 from ENCODE 3 (ENCFF313RFR) 0 402 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in HepG2 from ENCODE 3 (ENCFF313RFR)\ parent encTfChipPk off\ shortLabel HepG2 NRF1 2\ subGroups cellType=HepG2 factor=NRF1\ track encTfChipPkENCFF313RFR\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_tpm_rev Tc:iPStoNeuronDs_Day12R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_reverse 1 402 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep2.CNhs13845.13451-144G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13451-144G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_ctss_rev Tc:iPStoNeuronDs_Day12R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_reverse 0 402 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep2.CNhs13845.13451-144G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13451-144G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF487WAN HepG2 PCBP1 narrowPeak Transcription Factor ChIP-seq Peaks of PCBP1 in HepG2 from ENCODE 3 (ENCFF487WAN) 0 403 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of PCBP1 in HepG2 from ENCODE 3 (ENCFF487WAN)\ parent encTfChipPk off\ shortLabel HepG2 PCBP1\ subGroups cellType=HepG2 factor=PCBP1\ track encTfChipPkENCFF487WAN\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_tpm_fwd Tc:iPStoNeuronDs_Day12R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_forward 1 403 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep3.CNhs14058.13455-144G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13455-144G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_ctss_fwd Tc:iPStoNeuronDs_Day12R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_forward 0 403 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep3.CNhs14058.13455-144G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13455-144G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF642XRH HepG2 PCBP2 narrowPeak Transcription Factor ChIP-seq Peaks of PCBP2 in HepG2 from ENCODE 3 (ENCFF642XRH) 0 404 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of PCBP2 in HepG2 from ENCODE 3 (ENCFF642XRH)\ parent encTfChipPk off\ shortLabel HepG2 PCBP2\ subGroups cellType=HepG2 factor=PCBP2\ track encTfChipPkENCFF642XRH\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_tpm_rev Tc:iPStoNeuronDs_Day12R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_reverse 1 404 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep3.CNhs14058.13455-144G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13455-144G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_ctss_rev Tc:iPStoNeuronDs_Day12R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_reverse 0 404 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep3.CNhs14058.13455-144G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13455-144G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF882RPA HepG2 PHB2 narrowPeak Transcription Factor ChIP-seq Peaks of PHB2 in HepG2 from ENCODE 3 (ENCFF882RPA) 0 405 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of PHB2 in HepG2 from ENCODE 3 (ENCFF882RPA)\ parent encTfChipPk off\ shortLabel HepG2 PHB2\ subGroups cellType=HepG2 factor=PHB2\ track encTfChipPkENCFF882RPA\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_tpm_fwd Tc:iPStoNeuronDs_Day18R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_forward 1 405 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep1.CNhs13833.13448-144G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13448-144G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_ctss_fwd Tc:iPStoNeuronDs_Day18R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_forward 0 405 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep1.CNhs13833.13448-144G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13448-144G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF202WIO HepG2 PHF8 narrowPeak Transcription Factor ChIP-seq Peaks of PHF8 in HepG2 from ENCODE 3 (ENCFF202WIO) 0 406 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of PHF8 in HepG2 from ENCODE 3 (ENCFF202WIO)\ parent encTfChipPk off\ shortLabel HepG2 PHF8\ subGroups cellType=HepG2 factor=PHF8\ track encTfChipPkENCFF202WIO\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_tpm_rev Tc:iPStoNeuronDs_Day18R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_reverse 1 406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep1.CNhs13833.13448-144G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13448-144G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_ctss_rev Tc:iPStoNeuronDs_Day18R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_reverse 0 406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep1.CNhs13833.13448-144G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13448-144G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF873OHG HepG2 PLRG1 narrowPeak Transcription Factor ChIP-seq Peaks of PLRG1 in HepG2 from ENCODE 3 (ENCFF873OHG) 0 407 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of PLRG1 in HepG2 from ENCODE 3 (ENCFF873OHG)\ parent encTfChipPk off\ shortLabel HepG2 PLRG1\ subGroups cellType=HepG2 factor=PLRG1\ track encTfChipPkENCFF873OHG\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_tpm_fwd Tc:iPStoNeuronDs_Day18R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_forward 1 407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep2.CNhs13846.13452-144G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13452-144G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_ctss_fwd Tc:iPStoNeuronDs_Day18R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_forward 0 407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep2.CNhs13846.13452-144G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13452-144G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF565SUC HepG2 POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in HepG2 from ENCODE 3 (ENCFF565SUC) 0 408 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in HepG2 from ENCODE 3 (ENCFF565SUC)\ parent encTfChipPk off\ shortLabel HepG2 POLR2A\ subGroups cellType=HepG2 factor=POLR2A\ track encTfChipPkENCFF565SUC\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_tpm_rev Tc:iPStoNeuronDs_Day18R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_reverse 1 408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep2.CNhs13846.13452-144G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13452-144G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_ctss_rev Tc:iPStoNeuronDs_Day18R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_reverse 0 408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep2.CNhs13846.13452-144G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13452-144G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF551IJP HepG2 POLR2G narrowPeak Transcription Factor ChIP-seq Peaks of POLR2G in HepG2 from ENCODE 3 (ENCFF551IJP) 0 409 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of POLR2G in HepG2 from ENCODE 3 (ENCFF551IJP)\ parent encTfChipPk off\ shortLabel HepG2 POLR2G\ subGroups cellType=HepG2 factor=POLR2G\ track encTfChipPkENCFF551IJP\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_tpm_fwd Tc:iPStoNeuronDs_Day18R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_forward 1 409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep3.CNhs14059.13456-144G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13456-144G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_ctss_fwd Tc:iPStoNeuronDs_Day18R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_forward 0 409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep3.CNhs14059.13456-144G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13456-144G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF908QCS HepG2 PRPF4 narrowPeak Transcription Factor ChIP-seq Peaks of PRPF4 in HepG2 from ENCODE 3 (ENCFF908QCS) 0 410 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of PRPF4 in HepG2 from ENCODE 3 (ENCFF908QCS)\ parent encTfChipPk off\ shortLabel HepG2 PRPF4\ subGroups cellType=HepG2 factor=PRPF4\ track encTfChipPkENCFF908QCS\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_tpm_rev Tc:iPStoNeuronDs_Day18R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_reverse 1 410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep3.CNhs14059.13456-144G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13456-144G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_ctss_rev Tc:iPStoNeuronDs_Day18R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_reverse 0 410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep3.CNhs14059.13456-144G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13456-144G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF875ZPV HepG2 PTBP1 narrowPeak Transcription Factor ChIP-seq Peaks of PTBP1 in HepG2 from ENCODE 3 (ENCFF875ZPV) 0 411 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of PTBP1 in HepG2 from ENCODE 3 (ENCFF875ZPV)\ parent encTfChipPk off\ shortLabel HepG2 PTBP1\ subGroups cellType=HepG2 factor=PTBP1\ track encTfChipPkENCFF875ZPV\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_tpm_fwd Tc:iPStoNeuronDs_Day00R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_forward 1 411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep1.CNhs13835.13457-144H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13457-144H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_ctss_fwd Tc:iPStoNeuronDs_Day00R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_forward 0 411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep1.CNhs13835.13457-144H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13457-144H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF093XOJ HepG2 RAD21 1 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in HepG2 from ENCODE 3 (ENCFF093XOJ) 0 412 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RAD21 in HepG2 from ENCODE 3 (ENCFF093XOJ)\ parent encTfChipPk off\ shortLabel HepG2 RAD21 1\ subGroups cellType=HepG2 factor=RAD21\ track encTfChipPkENCFF093XOJ\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_tpm_rev Tc:iPStoNeuronDs_Day00R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_reverse 1 412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep1.CNhs13835.13457-144H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13457-144H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_ctss_rev Tc:iPStoNeuronDs_Day00R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_reverse 0 412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep1.CNhs13835.13457-144H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13457-144H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF874VFZ HepG2 RAD21 2 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in HepG2 from ENCODE 3 (ENCFF874VFZ) 0 413 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RAD21 in HepG2 from ENCODE 3 (ENCFF874VFZ)\ parent encTfChipPk off\ shortLabel HepG2 RAD21 2\ subGroups cellType=HepG2 factor=RAD21\ track encTfChipPkENCFF874VFZ\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_tpm_fwd Tc:iPStoNeuronDs_Day00R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_forward 1 413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep2.CNhs14060.13461-144H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13461-144H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_ctss_fwd Tc:iPStoNeuronDs_Day00R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_forward 0 413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep2.CNhs14060.13461-144H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13461-144H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF859MBC HepG2 RAD51 narrowPeak Transcription Factor ChIP-seq Peaks of RAD51 in HepG2 from ENCODE 3 (ENCFF859MBC) 0 414 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RAD51 in HepG2 from ENCODE 3 (ENCFF859MBC)\ parent encTfChipPk off\ shortLabel HepG2 RAD51\ subGroups cellType=HepG2 factor=RAD51\ track encTfChipPkENCFF859MBC\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_tpm_rev Tc:iPStoNeuronDs_Day00R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_reverse 1 414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep2.CNhs14060.13461-144H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13461-144H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_ctss_rev Tc:iPStoNeuronDs_Day00R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_reverse 0 414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep2.CNhs14060.13461-144H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13461-144H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF871YRG HepG2 RBFOX2 narrowPeak Transcription Factor ChIP-seq Peaks of RBFOX2 in HepG2 from ENCODE 3 (ENCFF871YRG) 0 415 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RBFOX2 in HepG2 from ENCODE 3 (ENCFF871YRG)\ parent encTfChipPk off\ shortLabel HepG2 RBFOX2\ subGroups cellType=HepG2 factor=RBFOX2\ track encTfChipPkENCFF871YRG\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_tpm_fwd Tc:iPStoNeuronDs_Day00R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_forward 1 415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep3.CNhs14063.13465-144H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13465-144H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_ctss_fwd Tc:iPStoNeuronDs_Day00R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_forward 0 415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep3.CNhs14063.13465-144H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13465-144H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF305WYD HepG2 RBM22 narrowPeak Transcription Factor ChIP-seq Peaks of RBM22 in HepG2 from ENCODE 3 (ENCFF305WYD) 0 416 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RBM22 in HepG2 from ENCODE 3 (ENCFF305WYD)\ parent encTfChipPk off\ shortLabel HepG2 RBM22\ subGroups cellType=HepG2 factor=RBM22\ track encTfChipPkENCFF305WYD\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_tpm_rev Tc:iPStoNeuronDs_Day00R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_reverse 1 416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep3.CNhs14063.13465-144H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13465-144H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_ctss_rev Tc:iPStoNeuronDs_Day00R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_reverse 0 416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep3.CNhs14063.13465-144H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13465-144H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF420ALF HepG2 RBM39 narrowPeak Transcription Factor ChIP-seq Peaks of RBM39 in HepG2 from ENCODE 3 (ENCFF420ALF) 0 417 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RBM39 in HepG2 from ENCODE 3 (ENCFF420ALF)\ parent encTfChipPk off\ shortLabel HepG2 RBM39\ subGroups cellType=HepG2 factor=RBM39\ track encTfChipPkENCFF420ALF\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_tpm_fwd Tc:iPStoNeuronDs_Day06R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_forward 1 417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep1.CNhs13836.13458-144H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13458-144H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_ctss_fwd Tc:iPStoNeuronDs_Day06R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_forward 0 417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep1.CNhs13836.13458-144H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13458-144H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF987VKU HepG2 RCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of RCOR1 in HepG2 from ENCODE 3 (ENCFF987VKU) 0 418 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RCOR1 in HepG2 from ENCODE 3 (ENCFF987VKU)\ parent encTfChipPk off\ shortLabel HepG2 RCOR1\ subGroups cellType=HepG2 factor=RCOR1\ track encTfChipPkENCFF987VKU\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_tpm_rev Tc:iPStoNeuronDs_Day06R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_reverse 1 418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep1.CNhs13836.13458-144H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13458-144H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_ctss_rev Tc:iPStoNeuronDs_Day06R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_reverse 0 418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep1.CNhs13836.13458-144H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13458-144H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF669XCW HepG2 REST 1 narrowPeak Transcription Factor ChIP-seq Peaks of REST in HepG2 from ENCODE 3 (ENCFF669XCW) 0 419 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of REST in HepG2 from ENCODE 3 (ENCFF669XCW)\ parent encTfChipPk off\ shortLabel HepG2 REST 1\ subGroups cellType=HepG2 factor=REST\ track encTfChipPkENCFF669XCW\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_tpm_fwd Tc:iPStoNeuronDs_Day06R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_forward 1 419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep2.CNhs14061.13462-144H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13462-144H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_ctss_fwd Tc:iPStoNeuronDs_Day06R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_forward 0 419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep2.CNhs14061.13462-144H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13462-144H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF986RRJ HepG2 REST 2 narrowPeak Transcription Factor ChIP-seq Peaks of REST in HepG2 from ENCODE 3 (ENCFF986RRJ) 0 420 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of REST in HepG2 from ENCODE 3 (ENCFF986RRJ)\ parent encTfChipPk off\ shortLabel HepG2 REST 2\ subGroups cellType=HepG2 factor=REST\ track encTfChipPkENCFF986RRJ\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_tpm_rev Tc:iPStoNeuronDs_Day06R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_reverse 1 420 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep2.CNhs14061.13462-144H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13462-144H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_ctss_rev Tc:iPStoNeuronDs_Day06R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_reverse 0 420 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep2.CNhs14061.13462-144H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13462-144H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF788CJF HepG2 RFX1 narrowPeak Transcription Factor ChIP-seq Peaks of RFX1 in HepG2 from ENCODE 3 (ENCFF788CJF) 0 421 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RFX1 in HepG2 from ENCODE 3 (ENCFF788CJF)\ parent encTfChipPk off\ shortLabel HepG2 RFX1\ subGroups cellType=HepG2 factor=RFX1\ track encTfChipPkENCFF788CJF\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_tpm_fwd Tc:iPStoNeuronDs_Day06R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_forward 1 421 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep3.CNhs14064.13466-144I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13466-144I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_ctss_fwd Tc:iPStoNeuronDs_Day06R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_forward 0 421 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep3.CNhs14064.13466-144I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13466-144I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF059GWW HepG2 RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in HepG2 from ENCODE 3 (ENCFF059GWW) 0 422 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RFX5 in HepG2 from ENCODE 3 (ENCFF059GWW)\ parent encTfChipPk off\ shortLabel HepG2 RFX5\ subGroups cellType=HepG2 factor=RFX5\ track encTfChipPkENCFF059GWW\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_tpm_rev Tc:iPStoNeuronDs_Day06R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_reverse 1 422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep3.CNhs14064.13466-144I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13466-144I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_ctss_rev Tc:iPStoNeuronDs_Day06R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_reverse 0 422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep3.CNhs14064.13466-144I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13466-144I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF380SYL HepG2 RNF2 narrowPeak Transcription Factor ChIP-seq Peaks of RNF2 in HepG2 from ENCODE 3 (ENCFF380SYL) 0 423 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RNF2 in HepG2 from ENCODE 3 (ENCFF380SYL)\ parent encTfChipPk off\ shortLabel HepG2 RNF2\ subGroups cellType=HepG2 factor=RNF2\ track encTfChipPkENCFF380SYL\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_tpm_fwd Tc:iPStoNeuronDs_Day12R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_forward 1 423 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep1.CNhs13837.13459-144H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13459-144H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_ctss_fwd Tc:iPStoNeuronDs_Day12R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_forward 0 423 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep1.CNhs13837.13459-144H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13459-144H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF105TFM HepG2 RXRA narrowPeak Transcription Factor ChIP-seq Peaks of RXRA in HepG2 from ENCODE 3 (ENCFF105TFM) 0 424 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RXRA in HepG2 from ENCODE 3 (ENCFF105TFM)\ parent encTfChipPk off\ shortLabel HepG2 RXRA\ subGroups cellType=HepG2 factor=RXRA\ track encTfChipPkENCFF105TFM\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_tpm_rev Tc:iPStoNeuronDs_Day12R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_reverse 1 424 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep1.CNhs13837.13459-144H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13459-144H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_ctss_rev Tc:iPStoNeuronDs_Day12R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_reverse 0 424 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep1.CNhs13837.13459-144H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13459-144H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF635YMI HepG2 SIN3A narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in HepG2 from ENCODE 3 (ENCFF635YMI) 0 425 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SIN3A in HepG2 from ENCODE 3 (ENCFF635YMI)\ parent encTfChipPk on\ shortLabel HepG2 SIN3A\ subGroups cellType=HepG2 factor=SIN3A\ track encTfChipPkENCFF635YMI\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_tpm_fwd Tc:iPStoNeuronDs_Day12R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_forward 1 425 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep2.CNhs14062.13463-144H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13463-144H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_ctss_fwd Tc:iPStoNeuronDs_Day12R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_forward 0 425 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep2.CNhs14062.13463-144H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13463-144H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF193DQZ HepG2 SIN3B narrowPeak Transcription Factor ChIP-seq Peaks of SIN3B in HepG2 from ENCODE 3 (ENCFF193DQZ) 0 426 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SIN3B in HepG2 from ENCODE 3 (ENCFF193DQZ)\ parent encTfChipPk off\ shortLabel HepG2 SIN3B\ subGroups cellType=HepG2 factor=SIN3B\ track encTfChipPkENCFF193DQZ\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_tpm_rev Tc:iPStoNeuronDs_Day12R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_reverse 1 426 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep2.CNhs14062.13463-144H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13463-144H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_ctss_rev Tc:iPStoNeuronDs_Day12R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_reverse 0 426 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep2.CNhs14062.13463-144H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13463-144H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF035ZFO HepG2 SKI narrowPeak Transcription Factor ChIP-seq Peaks of SKI in HepG2 from ENCODE 3 (ENCFF035ZFO) 0 427 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SKI in HepG2 from ENCODE 3 (ENCFF035ZFO)\ parent encTfChipPk off\ shortLabel HepG2 SKI\ subGroups cellType=HepG2 factor=SKI\ track encTfChipPkENCFF035ZFO\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_tpm_fwd Tc:iPStoNeuronDs_Day12R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_forward 1 427 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep3.CNhs14065.13467-144I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13467-144I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_ctss_fwd Tc:iPStoNeuronDs_Day12R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_forward 0 427 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep3.CNhs14065.13467-144I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13467-144I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF150NHK HepG2 SMARCC2 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCC2 in HepG2 from ENCODE 3 (ENCFF150NHK) 0 428 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SMARCC2 in HepG2 from ENCODE 3 (ENCFF150NHK)\ parent encTfChipPk off\ shortLabel HepG2 SMARCC2\ subGroups cellType=HepG2 factor=SMARCC2\ track encTfChipPkENCFF150NHK\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_tpm_rev Tc:iPStoNeuronDs_Day12R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_reverse 1 428 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep3.CNhs14065.13467-144I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13467-144I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_ctss_rev Tc:iPStoNeuronDs_Day12R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_reverse 0 428 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep3.CNhs14065.13467-144I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13467-144I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF210HAA HepG2 SMARCE1 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCE1 in HepG2 from ENCODE 3 (ENCFF210HAA) 0 429 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SMARCE1 in HepG2 from ENCODE 3 (ENCFF210HAA)\ parent encTfChipPk off\ shortLabel HepG2 SMARCE1\ subGroups cellType=HepG2 factor=SMARCE1\ track encTfChipPkENCFF210HAA\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_tpm_fwd Tc:iPStoNeuronDs_Day18R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_forward 1 429 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep1.CNhs13838.13460-144H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13460-144H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_ctss_fwd Tc:iPStoNeuronDs_Day18R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_forward 0 429 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep1.CNhs13838.13460-144H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13460-144H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF035YWE HepG2 SMC3 narrowPeak Transcription Factor ChIP-seq Peaks of SMC3 in HepG2 from ENCODE 3 (ENCFF035YWE) 0 430 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SMC3 in HepG2 from ENCODE 3 (ENCFF035YWE)\ parent encTfChipPk off\ shortLabel HepG2 SMC3\ subGroups cellType=HepG2 factor=SMC3\ track encTfChipPkENCFF035YWE\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_tpm_rev Tc:iPStoNeuronDs_Day18R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_reverse 1 430 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep1.CNhs13838.13460-144H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13460-144H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_ctss_rev Tc:iPStoNeuronDs_Day18R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_reverse 0 430 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep1.CNhs13838.13460-144H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13460-144H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF858FBZ HepG2 SNRNP70 narrowPeak Transcription Factor ChIP-seq Peaks of SNRNP70 in HepG2 from ENCODE 3 (ENCFF858FBZ) 0 431 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SNRNP70 in HepG2 from ENCODE 3 (ENCFF858FBZ)\ parent encTfChipPk off\ shortLabel HepG2 SNRNP70\ subGroups cellType=HepG2 factor=SNRNP70\ track encTfChipPkENCFF858FBZ\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_tpm_fwd Tc:iPStoNeuronDs_Day18R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_forward 1 431 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep2.CNhs13922.13464-144H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13464-144H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_ctss_fwd Tc:iPStoNeuronDs_Day18R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_forward 0 431 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep2.CNhs13922.13464-144H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13464-144H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF257QND HepG2 SOX13 narrowPeak Transcription Factor ChIP-seq Peaks of SOX13 in HepG2 from ENCODE 3 (ENCFF257QND) 0 432 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SOX13 in HepG2 from ENCODE 3 (ENCFF257QND)\ parent encTfChipPk off\ shortLabel HepG2 SOX13\ subGroups cellType=HepG2 factor=SOX13\ track encTfChipPkENCFF257QND\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_tpm_rev Tc:iPStoNeuronDs_Day18R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_reverse 1 432 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep2.CNhs13922.13464-144H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13464-144H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_ctss_rev Tc:iPStoNeuronDs_Day18R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_reverse 0 432 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep2.CNhs13922.13464-144H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13464-144H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF944LNI HepG2 SOX6 narrowPeak Transcription Factor ChIP-seq Peaks of SOX6 in HepG2 from ENCODE 3 (ENCFF944LNI) 0 433 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SOX6 in HepG2 from ENCODE 3 (ENCFF944LNI)\ parent encTfChipPk off\ shortLabel HepG2 SOX6\ subGroups cellType=HepG2 factor=SOX6\ track encTfChipPkENCFF944LNI\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_tpm_fwd Tc:iPStoNeuronDs_Day18R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_forward 1 433 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep3.CNhs14066.13468-144I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13468-144I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_ctss_fwd Tc:iPStoNeuronDs_Day18R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_forward 0 433 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep3.CNhs14066.13468-144I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13468-144I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF175VXL HepG2 SP1 1 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in HepG2 from ENCODE 3 (ENCFF175VXL) 0 434 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SP1 in HepG2 from ENCODE 3 (ENCFF175VXL)\ parent encTfChipPk on\ shortLabel HepG2 SP1 1\ subGroups cellType=HepG2 factor=SP1\ track encTfChipPkENCFF175VXL\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_tpm_rev Tc:iPStoNeuronDs_Day18R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_reverse 1 434 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep3.CNhs14066.13468-144I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13468-144I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_ctss_rev Tc:iPStoNeuronDs_Day18R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_reverse 0 434 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep3.CNhs14066.13468-144I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13468-144I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF735WMX HepG2 SP1 2 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in HepG2 from ENCODE 3 (ENCFF735WMX) 0 435 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SP1 in HepG2 from ENCODE 3 (ENCFF735WMX)\ parent encTfChipPk off\ shortLabel HepG2 SP1 2\ subGroups cellType=HepG2 factor=SP1\ track encTfChipPkENCFF735WMX\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day00R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_forward 1 435 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep1.CNhs14045.13421-144D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13421-144D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day00R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_forward 0 435 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep1.CNhs14045.13421-144D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13421-144D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF122FVR HepG2 SRSF4 narrowPeak Transcription Factor ChIP-seq Peaks of SRSF4 in HepG2 from ENCODE 3 (ENCFF122FVR) 0 436 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SRSF4 in HepG2 from ENCODE 3 (ENCFF122FVR)\ parent encTfChipPk off\ shortLabel HepG2 SRSF4\ subGroups cellType=HepG2 factor=SRSF4\ track encTfChipPkENCFF122FVR\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_tpm_rev IpsToNeuronControlDnC11-CRL2429Day00R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_reverse 1 436 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep1.CNhs14045.13421-144D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13421-144D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_ctss_rev IpsToNeuronControlDnC11-CRL2429Day00R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_reverse 0 436 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep1.CNhs14045.13421-144D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13421-144D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF105XWO HepG2 SRSF9 narrowPeak Transcription Factor ChIP-seq Peaks of SRSF9 in HepG2 from ENCODE 3 (ENCFF105XWO) 0 437 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SRSF9 in HepG2 from ENCODE 3 (ENCFF105XWO)\ parent encTfChipPk off\ shortLabel HepG2 SRSF9\ subGroups cellType=HepG2 factor=SRSF9\ track encTfChipPkENCFF105XWO\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day00R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_forward 1 437 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep2.CNhs13822.13425-144D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13425-144D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day00R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_forward 0 437 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep2.CNhs13822.13425-144D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13425-144D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF239LRW HepG2 SUZ12 narrowPeak Transcription Factor ChIP-seq Peaks of SUZ12 in HepG2 from ENCODE 3 (ENCFF239LRW) 0 438 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SUZ12 in HepG2 from ENCODE 3 (ENCFF239LRW)\ parent encTfChipPk off\ shortLabel HepG2 SUZ12\ subGroups cellType=HepG2 factor=SUZ12\ track encTfChipPkENCFF239LRW\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_tpm_rev IpsToNeuronControlDnC11-CRL2429Day00R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_reverse 1 438 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep2.CNhs13822.13425-144D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13425-144D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_ctss_rev IpsToNeuronControlDnC11-CRL2429Day00R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_reverse 0 438 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep2.CNhs13822.13425-144D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13425-144D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF234TBW HepG2 TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in HepG2 from ENCODE 3 (ENCFF234TBW) 0 439 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TAF1 in HepG2 from ENCODE 3 (ENCFF234TBW)\ parent encTfChipPk off\ shortLabel HepG2 TAF1\ subGroups cellType=HepG2 factor=TAF1\ track encTfChipPkENCFF234TBW\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day00R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_forward 1 439 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep3.CNhs14049.13429-144D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13429-144D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day00R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_forward 0 439 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep3.CNhs14049.13429-144D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13429-144D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF718RXL HepG2 TAF15 narrowPeak Transcription Factor ChIP-seq Peaks of TAF15 in HepG2 from ENCODE 3 (ENCFF718RXL) 0 440 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TAF15 in HepG2 from ENCODE 3 (ENCFF718RXL)\ parent encTfChipPk off\ shortLabel HepG2 TAF15\ subGroups cellType=HepG2 factor=TAF15\ track encTfChipPkENCFF718RXL\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_tpm_rev IpsToNeuronControlDnC11-CRL2429Day00R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_reverse 1 440 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep3.CNhs14049.13429-144D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13429-144D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_ctss_rev IpsToNeuronControlDnC11-CRL2429Day00R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_reverse 0 440 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep3.CNhs14049.13429-144D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13429-144D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF126KGW HepG2 TBL1XR1 narrowPeak Transcription Factor ChIP-seq Peaks of TBL1XR1 in HepG2 from ENCODE 3 (ENCFF126KGW) 0 441 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TBL1XR1 in HepG2 from ENCODE 3 (ENCFF126KGW)\ parent encTfChipPk off\ shortLabel HepG2 TBL1XR1\ subGroups cellType=HepG2 factor=TBL1XR1\ track encTfChipPkENCFF126KGW\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day06R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_forward 1 441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep1.CNhs14046.13422-144D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13422-144D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day06R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_forward 0 441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep1.CNhs14046.13422-144D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13422-144D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF534GKQ HepG2 TBP narrowPeak Transcription Factor ChIP-seq Peaks of TBP in HepG2 from ENCODE 3 (ENCFF534GKQ) 0 442 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TBP in HepG2 from ENCODE 3 (ENCFF534GKQ)\ parent encTfChipPk off\ shortLabel HepG2 TBP\ subGroups cellType=HepG2 factor=TBP\ track encTfChipPkENCFF534GKQ\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_tpm_rev IpsToNeuronControlDnC11-CRL2429Day06R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_reverse 1 442 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep1.CNhs14046.13422-144D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13422-144D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_ctss_rev IpsToNeuronControlDnC11-CRL2429Day06R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_reverse 0 442 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep1.CNhs14046.13422-144D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13422-144D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF654KVO HepG2 TBX3 1 narrowPeak Transcription Factor ChIP-seq Peaks of TBX3 in HepG2 from ENCODE 3 (ENCFF654KVO) 0 443 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TBX3 in HepG2 from ENCODE 3 (ENCFF654KVO)\ parent encTfChipPk off\ shortLabel HepG2 TBX3 1\ subGroups cellType=HepG2 factor=TBX3\ track encTfChipPkENCFF654KVO\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day06R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_forward 1 443 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep2.CNhs13823.13426-144D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13426-144D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day06R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_forward 0 443 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep2.CNhs13823.13426-144D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13426-144D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF887DUY HepG2 TBX3 2 narrowPeak Transcription Factor ChIP-seq Peaks of TBX3 in HepG2 from ENCODE 3 (ENCFF887DUY) 0 444 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TBX3 in HepG2 from ENCODE 3 (ENCFF887DUY)\ parent encTfChipPk off\ shortLabel HepG2 TBX3 2\ subGroups cellType=HepG2 factor=TBX3\ track encTfChipPkENCFF887DUY\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_tpm_rev IpsToNeuronControlDnC11-CRL2429Day06R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_reverse 1 444 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep2.CNhs13823.13426-144D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13426-144D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_ctss_rev IpsToNeuronControlDnC11-CRL2429Day06R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_reverse 0 444 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep2.CNhs13823.13426-144D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13426-144D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF820PHL HepG2 TCF12 1 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in HepG2 from ENCODE 3 (ENCFF820PHL) 0 445 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in HepG2 from ENCODE 3 (ENCFF820PHL)\ parent encTfChipPk off\ shortLabel HepG2 TCF12 1\ subGroups cellType=HepG2 factor=TCF12\ track encTfChipPkENCFF820PHL\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day06R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_forward 1 445 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep3.CNhs14050.13430-144E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13430-144E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day06R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_forward 0 445 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep3.CNhs14050.13430-144E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13430-144E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF299JYV HepG2 TCF12 2 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in HepG2 from ENCODE 3 (ENCFF299JYV) 0 446 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in HepG2 from ENCODE 3 (ENCFF299JYV)\ parent encTfChipPk off\ shortLabel HepG2 TCF12 2\ subGroups cellType=HepG2 factor=TCF12\ track encTfChipPkENCFF299JYV\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_tpm_rev IpsToNeuronControlDnC11-CRL2429Day06R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_reverse 1 446 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep3.CNhs14050.13430-144E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13430-144E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_ctss_rev IpsToNeuronControlDnC11-CRL2429Day06R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_reverse 0 446 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep3.CNhs14050.13430-144E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13430-144E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF928MIN HepG2 TCF7 narrowPeak Transcription Factor ChIP-seq Peaks of TCF7 in HepG2 from ENCODE 3 (ENCFF928MIN) 0 447 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TCF7 in HepG2 from ENCODE 3 (ENCFF928MIN)\ parent encTfChipPk off\ shortLabel HepG2 TCF7\ subGroups cellType=HepG2 factor=TCF7\ track encTfChipPkENCFF928MIN\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day12R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_forward 1 447 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep1.CNhs14047.13423-144D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13423-144D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day12R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_forward 0 447 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep1.CNhs14047.13423-144D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13423-144D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF912SQI HepG2 TFAP4 narrowPeak Transcription Factor ChIP-seq Peaks of TFAP4 in HepG2 from ENCODE 3 (ENCFF912SQI) 0 448 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TFAP4 in HepG2 from ENCODE 3 (ENCFF912SQI)\ parent encTfChipPk off\ shortLabel HepG2 TFAP4\ subGroups cellType=HepG2 factor=TFAP4\ track encTfChipPkENCFF912SQI\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_tpm_rev IpsToNeuronControlDnC11-CRL2429Day12R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_reverse 1 448 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep1.CNhs14047.13423-144D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13423-144D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_ctss_rev IpsToNeuronControlDnC11-CRL2429Day12R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_reverse 0 448 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep1.CNhs14047.13423-144D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13423-144D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF063GDN HepG2 TRIM22 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM22 in HepG2 from ENCODE 3 (ENCFF063GDN) 0 449 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TRIM22 in HepG2 from ENCODE 3 (ENCFF063GDN)\ parent encTfChipPk off\ shortLabel HepG2 TRIM22\ subGroups cellType=HepG2 factor=TRIM22\ track encTfChipPkENCFF063GDN\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day12R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_forward 1 449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep2.CNhs13824.13427-144D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13427-144D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day12R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_forward 0 449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep2.CNhs13824.13427-144D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13427-144D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF034KUO HepG2 U2AF1 narrowPeak Transcription Factor ChIP-seq Peaks of U2AF1 in HepG2 from ENCODE 3 (ENCFF034KUO) 0 450 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of U2AF1 in HepG2 from ENCODE 3 (ENCFF034KUO)\ parent encTfChipPk off\ shortLabel HepG2 U2AF1\ subGroups cellType=HepG2 factor=U2AF1\ track encTfChipPkENCFF034KUO\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_tpm_rev IpsToNeuronControlDnC11-CRL2429Day12R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_reverse 1 450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep2.CNhs13824.13427-144D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13427-144D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_ctss_rev IpsToNeuronControlDnC11-CRL2429Day12R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_reverse 0 450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep2.CNhs13824.13427-144D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13427-144D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF562ADR HepG2 U2AF2 narrowPeak Transcription Factor ChIP-seq Peaks of U2AF2 in HepG2 from ENCODE 3 (ENCFF562ADR) 0 451 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of U2AF2 in HepG2 from ENCODE 3 (ENCFF562ADR)\ parent encTfChipPk off\ shortLabel HepG2 U2AF2\ subGroups cellType=HepG2 factor=U2AF2\ track encTfChipPkENCFF562ADR\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day12R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_forward 1 451 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep3.CNhs14051.13431-144E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13431-144E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day12R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_forward 0 451 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep3.CNhs14051.13431-144E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13431-144E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF914IFQ HepG2 USF1 narrowPeak Transcription Factor ChIP-seq Peaks of USF1 in HepG2 from ENCODE 3 (ENCFF914IFQ) 0 452 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of USF1 in HepG2 from ENCODE 3 (ENCFF914IFQ)\ parent encTfChipPk off\ shortLabel HepG2 USF1\ subGroups cellType=HepG2 factor=USF1\ track encTfChipPkENCFF914IFQ\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_tpm_rev IpsToNeuronControlDnC11-CRL2429Day12R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_reverse 1 452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep3.CNhs14051.13431-144E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13431-144E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_ctss_rev IpsToNeuronControlDnC11-CRL2429Day12R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_reverse 0 452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep3.CNhs14051.13431-144E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13431-144E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF790ZAQ HepG2 XRCC5 narrowPeak Transcription Factor ChIP-seq Peaks of XRCC5 in HepG2 from ENCODE 3 (ENCFF790ZAQ) 0 453 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of XRCC5 in HepG2 from ENCODE 3 (ENCFF790ZAQ)\ parent encTfChipPk off\ shortLabel HepG2 XRCC5\ subGroups cellType=HepG2 factor=XRCC5\ track encTfChipPkENCFF790ZAQ\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day18R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_forward 1 453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep1.CNhs13916.13424-144D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13424-144D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day18R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_forward 0 453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep1.CNhs13916.13424-144D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13424-144D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF177YDT HepG2 YY1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in HepG2 from ENCODE 3 (ENCFF177YDT) 0 454 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in HepG2 from ENCODE 3 (ENCFF177YDT)\ parent encTfChipPk off\ shortLabel HepG2 YY1\ subGroups cellType=HepG2 factor=YY1\ track encTfChipPkENCFF177YDT\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_tpm_rev IpsToNeuronControlDnC11-CRL2429Day18R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_reverse 1 454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep1.CNhs13916.13424-144D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13424-144D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_ctss_rev IpsToNeuronControlDnC11-CRL2429Day18R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_reverse 0 454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep1.CNhs13916.13424-144D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13424-144D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF943WRA HepG2 ZBTB33 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in HepG2 from ENCODE 3 (ENCFF943WRA) 0 455 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in HepG2 from ENCODE 3 (ENCFF943WRA)\ parent encTfChipPk off\ shortLabel HepG2 ZBTB33\ subGroups cellType=HepG2 factor=ZBTB33\ track encTfChipPkENCFF943WRA\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day18R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_forward 1 455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep2.CNhs13825.13428-144D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13428-144D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day18R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_forward 0 455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep2.CNhs13825.13428-144D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13428-144D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF624WDI HepG2 ZBTB40 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB40 in HepG2 from ENCODE 3 (ENCFF624WDI) 0 456 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB40 in HepG2 from ENCODE 3 (ENCFF624WDI)\ parent encTfChipPk off\ shortLabel HepG2 ZBTB40\ subGroups cellType=HepG2 factor=ZBTB40\ track encTfChipPkENCFF624WDI\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_tpm_rev IpsToNeuronControlDnC11-CRL2429Day18R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_reverse 1 456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep2.CNhs13825.13428-144D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13428-144D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_ctss_rev IpsToNeuronControlDnC11-CRL2429Day18R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_reverse 0 456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep2.CNhs13825.13428-144D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13428-144D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF953JQD HepG2 ZBTB7A narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB7A in HepG2 from ENCODE 3 (ENCFF953JQD) 0 457 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB7A in HepG2 from ENCODE 3 (ENCFF953JQD)\ parent encTfChipPk off\ shortLabel HepG2 ZBTB7A\ subGroups cellType=HepG2 factor=ZBTB7A\ track encTfChipPkENCFF953JQD\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day18R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_forward 1 457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep3.CNhs13917.13432-144E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13432-144E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day18R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_forward 0 457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep3.CNhs13917.13432-144E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13432-144E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF964KDQ HepG2 ZHX2 narrowPeak Transcription Factor ChIP-seq Peaks of ZHX2 in HepG2 from ENCODE 3 (ENCFF964KDQ) 0 458 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZHX2 in HepG2 from ENCODE 3 (ENCFF964KDQ)\ parent encTfChipPk off\ shortLabel HepG2 ZHX2\ subGroups cellType=HepG2 factor=ZHX2\ track encTfChipPkENCFF964KDQ\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_tpm_rev IpsToNeuronControlDnC11-CRL2429Day18R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_reverse 1 458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep3.CNhs13917.13432-144E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13432-144E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_ctss_rev IpsToNeuronControlDnC11-CRL2429Day18R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_reverse 0 458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep3.CNhs13917.13432-144E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13432-144E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF721NEC HepG2 ZKSCAN1 narrowPeak Transcription Factor ChIP-seq Peaks of ZKSCAN1 in HepG2 from ENCODE 3 (ENCFF721NEC) 0 459 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZKSCAN1 in HepG2 from ENCODE 3 (ENCFF721NEC)\ parent encTfChipPk off\ shortLabel HepG2 ZKSCAN1\ subGroups cellType=HepG2 factor=ZKSCAN1\ track encTfChipPkENCFF721NEC\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day00R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_forward 1 459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep1.CNhs13826.13433-144E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13433-144E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day00R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_forward 0 459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep1.CNhs13826.13433-144E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13433-144E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF769SEZ HepG2 ZMYM3 narrowPeak Transcription Factor ChIP-seq Peaks of ZMYM3 in HepG2 from ENCODE 3 (ENCFF769SEZ) 0 460 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZMYM3 in HepG2 from ENCODE 3 (ENCFF769SEZ)\ parent encTfChipPk off\ shortLabel HepG2 ZMYM3\ subGroups cellType=HepG2 factor=ZMYM3\ track encTfChipPkENCFF769SEZ\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_tpm_rev IpsToNeuronControlDnC11-CRL2429Day00R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_reverse 1 460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep1.CNhs13826.13433-144E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13433-144E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_ctss_rev IpsToNeuronControlDnC11-CRL2429Day00R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_reverse 0 460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep1.CNhs13826.13433-144E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13433-144E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF657ZXY HepG2 ZNF207 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF207 in HepG2 from ENCODE 3 (ENCFF657ZXY) 0 461 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF207 in HepG2 from ENCODE 3 (ENCFF657ZXY)\ parent encTfChipPk off\ shortLabel HepG2 ZNF207\ subGroups cellType=HepG2 factor=ZNF207\ track encTfChipPkENCFF657ZXY\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day00R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_forward 1 461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep2.CNhs13839.13437-144E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13437-144E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day00R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_forward 0 461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep2.CNhs13839.13437-144E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13437-144E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF904QAD HepG2 ZNF24 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF24 in HepG2 from ENCODE 3 (ENCFF904QAD) 0 462 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF24 in HepG2 from ENCODE 3 (ENCFF904QAD)\ parent encTfChipPk off\ shortLabel HepG2 ZNF24 1\ subGroups cellType=HepG2 factor=ZNF24\ track encTfChipPkENCFF904QAD\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_tpm_rev IpsToNeuronControlDnC11-CRL2429Day00R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_reverse 1 462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep2.CNhs13839.13437-144E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13437-144E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_ctss_rev IpsToNeuronControlDnC11-CRL2429Day00R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_reverse 0 462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep2.CNhs13839.13437-144E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13437-144E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF858WPR HepG2 ZNF24 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF24 in HepG2 from ENCODE 3 (ENCFF858WPR) 0 463 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF24 in HepG2 from ENCODE 3 (ENCFF858WPR)\ parent encTfChipPk off\ shortLabel HepG2 ZNF24 2\ subGroups cellType=HepG2 factor=ZNF24\ track encTfChipPkENCFF858WPR\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day00R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_forward 1 463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep3.CNhs14052.13441-144F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13441-144F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day00R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_forward 0 463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep3.CNhs14052.13441-144F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13441-144F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF482XNG HepG2 ZNF282 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF282 in HepG2 from ENCODE 3 (ENCFF482XNG) 0 464 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF282 in HepG2 from ENCODE 3 (ENCFF482XNG)\ parent encTfChipPk off\ shortLabel HepG2 ZNF282\ subGroups cellType=HepG2 factor=ZNF282\ track encTfChipPkENCFF482XNG\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_tpm_rev IpsToNeuronControlDnC11-CRL2429Day00R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_reverse 1 464 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep3.CNhs14052.13441-144F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13441-144F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_ctss_rev IpsToNeuronControlDnC11-CRL2429Day00R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_reverse 0 464 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep3.CNhs14052.13441-144F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13441-144F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF950VAR HepG2 ZNF384 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF384 in HepG2 from ENCODE 3 (ENCFF950VAR) 0 465 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF384 in HepG2 from ENCODE 3 (ENCFF950VAR)\ parent encTfChipPk off\ shortLabel HepG2 ZNF384\ subGroups cellType=HepG2 factor=ZNF384\ track encTfChipPkENCFF950VAR\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day06R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_forward 1 465 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep1.CNhs13827.13434-144E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13434-144E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day06R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_forward 0 465 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep1.CNhs13827.13434-144E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13434-144E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF567GON IMR-90 BHLHE40 narrowPeak Transcription Factor ChIP-seq Peaks of BHLHE40 in IMR-90 from ENCODE 3 (ENCFF567GON) 0 466 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of BHLHE40 in IMR-90 from ENCODE 3 (ENCFF567GON)\ parent encTfChipPk off\ shortLabel IMR-90 BHLHE40\ subGroups cellType=IMR-90 factor=BHLHE40\ track encTfChipPkENCFF567GON\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_tpm_rev IpsToNeuronControlDnC11-CRL2429Day06R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_reverse 1 466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep1.CNhs13827.13434-144E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13434-144E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_ctss_rev IpsToNeuronControlDnC11-CRL2429Day06R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_reverse 0 466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep1.CNhs13827.13434-144E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13434-144E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF757KYL IMR-90 CEBPB narrowPeak Transcription Factor ChIP-seq Peaks of CEBPB in IMR-90 from ENCODE 3 (ENCFF757KYL) 0 467 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CEBPB in IMR-90 from ENCODE 3 (ENCFF757KYL)\ parent encTfChipPk off\ shortLabel IMR-90 CEBPB\ subGroups cellType=IMR-90 factor=CEBPB\ track encTfChipPkENCFF757KYL\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day06R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_forward 1 467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep2.CNhs13840.13438-144E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13438-144E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day06R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_forward 0 467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep2.CNhs13840.13438-144E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13438-144E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF510QXG IMR-90 CHD1 narrowPeak Transcription Factor ChIP-seq Peaks of CHD1 in IMR-90 from ENCODE 3 (ENCFF510QXG) 0 468 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CHD1 in IMR-90 from ENCODE 3 (ENCFF510QXG)\ parent encTfChipPk off\ shortLabel IMR-90 CHD1\ subGroups cellType=IMR-90 factor=CHD1\ track encTfChipPkENCFF510QXG\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_tpm_rev IpsToNeuronControlDnC11-CRL2429Day06R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_reverse 1 468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep2.CNhs13840.13438-144E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13438-144E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_ctss_rev IpsToNeuronControlDnC11-CRL2429Day06R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_reverse 0 468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep2.CNhs13840.13438-144E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13438-144E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF307XFM IMR-90 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in IMR-90 from ENCODE 3 (ENCFF307XFM) 0 469 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in IMR-90 from ENCODE 3 (ENCFF307XFM)\ parent encTfChipPk off\ shortLabel IMR-90 CTCF\ subGroups cellType=IMR-90 factor=CTCF\ track encTfChipPkENCFF307XFM\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day06R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_forward 1 469 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep3.CNhs14053.13442-144F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13442-144F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day06R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_forward 0 469 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep3.CNhs14053.13442-144F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13442-144F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF687IUD IMR-90 ELK1 narrowPeak Transcription Factor ChIP-seq Peaks of ELK1 in IMR-90 from ENCODE 3 (ENCFF687IUD) 0 470 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ELK1 in IMR-90 from ENCODE 3 (ENCFF687IUD)\ parent encTfChipPk off\ shortLabel IMR-90 ELK1\ subGroups cellType=IMR-90 factor=ELK1\ track encTfChipPkENCFF687IUD\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_tpm_rev IpsToNeuronControlDnC11-CRL2429Day06R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_reverse 1 470 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep3.CNhs14053.13442-144F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13442-144F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_ctss_rev IpsToNeuronControlDnC11-CRL2429Day06R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_reverse 0 470 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep3.CNhs14053.13442-144F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13442-144F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF217ZMF IMR-90 FOS narrowPeak Transcription Factor ChIP-seq Peaks of FOS in IMR-90 from ENCODE 3 (ENCFF217ZMF) 0 471 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOS in IMR-90 from ENCODE 3 (ENCFF217ZMF)\ parent encTfChipPk off\ shortLabel IMR-90 FOS\ subGroups cellType=IMR-90 factor=FOS\ track encTfChipPkENCFF217ZMF\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day12R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_forward 1 471 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep1.CNhs13828.13435-144E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13435-144E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day12R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_forward 0 471 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep1.CNhs13828.13435-144E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13435-144E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF351VGZ IMR-90 MAFK narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in IMR-90 from ENCODE 3 (ENCFF351VGZ) 0 472 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MAFK in IMR-90 from ENCODE 3 (ENCFF351VGZ)\ parent encTfChipPk off\ shortLabel IMR-90 MAFK\ subGroups cellType=IMR-90 factor=MAFK\ track encTfChipPkENCFF351VGZ\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_tpm_rev IpsToNeuronControlDnC11-CRL2429Day12R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_reverse 1 472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep1.CNhs13828.13435-144E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13435-144E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_ctss_rev IpsToNeuronControlDnC11-CRL2429Day12R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_reverse 0 472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep1.CNhs13828.13435-144E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13435-144E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF474PPT IMR-90 NFE2L2 narrowPeak Transcription Factor ChIP-seq Peaks of NFE2L2 in IMR-90 from ENCODE 3 (ENCFF474PPT) 0 473 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NFE2L2 in IMR-90 from ENCODE 3 (ENCFF474PPT)\ parent encTfChipPk off\ shortLabel IMR-90 NFE2L2\ subGroups cellType=IMR-90 factor=NFE2L2\ track encTfChipPkENCFF474PPT\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day12R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_forward 1 473 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep2.CNhs13841.13439-144F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13439-144F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day12R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_forward 0 473 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep2.CNhs13841.13439-144F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13439-144F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF895JAW IMR-90 RAD21 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in IMR-90 from ENCODE 3 (ENCFF895JAW) 0 474 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD21 in IMR-90 from ENCODE 3 (ENCFF895JAW)\ parent encTfChipPk off\ shortLabel IMR-90 RAD21\ subGroups cellType=IMR-90 factor=RAD21\ track encTfChipPkENCFF895JAW\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_tpm_rev IpsToNeuronControlDnC11-CRL2429Day12R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_reverse 1 474 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep2.CNhs13841.13439-144F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13439-144F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_ctss_rev IpsToNeuronControlDnC11-CRL2429Day12R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_reverse 0 474 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep2.CNhs13841.13439-144F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13439-144F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF139EBY IMR-90 RCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of RCOR1 in IMR-90 from ENCODE 3 (ENCFF139EBY) 0 475 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RCOR1 in IMR-90 from ENCODE 3 (ENCFF139EBY)\ parent encTfChipPk off\ shortLabel IMR-90 RCOR1\ subGroups cellType=IMR-90 factor=RCOR1\ track encTfChipPkENCFF139EBY\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day12R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_forward 1 475 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep3.CNhs14054.13443-144F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13443-144F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day12R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_forward 0 475 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep3.CNhs14054.13443-144F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13443-144F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF380ZXB IMR-90 SMC3 narrowPeak Transcription Factor ChIP-seq Peaks of SMC3 in IMR-90 from ENCODE 3 (ENCFF380ZXB) 0 476 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SMC3 in IMR-90 from ENCODE 3 (ENCFF380ZXB)\ parent encTfChipPk off\ shortLabel IMR-90 SMC3\ subGroups cellType=IMR-90 factor=SMC3\ track encTfChipPkENCFF380ZXB\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_tpm_rev IpsToNeuronControlDnC11-CRL2429Day12R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_reverse 1 476 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep3.CNhs14054.13443-144F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13443-144F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_ctss_rev IpsToNeuronControlDnC11-CRL2429Day12R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_reverse 0 476 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep3.CNhs14054.13443-144F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13443-144F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF938BOJ IMR-90 USF2 narrowPeak Transcription Factor ChIP-seq Peaks of USF2 in IMR-90 from ENCODE 3 (ENCFF938BOJ) 0 477 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of USF2 in IMR-90 from ENCODE 3 (ENCFF938BOJ)\ parent encTfChipPk off\ shortLabel IMR-90 USF2\ subGroups cellType=IMR-90 factor=USF2\ track encTfChipPkENCFF938BOJ\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day18R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_forward 1 477 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep1.CNhs13829.13436-144E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13436-144E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day18R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_forward 0 477 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep1.CNhs13829.13436-144E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13436-144E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_tpm_rev IpsToNeuronControlDnC11-CRL2429Day18R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_reverse 1 478 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep1.CNhs13829.13436-144E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13436-144E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_ctss_rev IpsToNeuronControlDnC11-CRL2429Day18R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_reverse 0 478 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep1.CNhs13829.13436-144E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13436-144E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF675JJV Ishikawa CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Ishikawa from ENCODE 3 (ENCFF675JJV) 0 478 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in Ishikawa from ENCODE 3 (ENCFF675JJV)\ parent encTfChipPk off\ shortLabel Ishikawa CTCF\ subGroups cellType=Ishikawa factor=CTCF\ track encTfChipPkENCFF675JJV\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day18R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_forward 1 479 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13440-144F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep2.CNhs13842.13440-144F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13440-144F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13440-144F2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day18R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_forward 0 479 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13440-144F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep2.CNhs13842.13440-144F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13440-144F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel 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regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep2.CNhs13842.13440-144F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13440-144F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13440-144F2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_ctss_rev IpsToNeuronControlDnC11-CRL2429Day18R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_reverse 0 480 0 0 255 127 127 255 0 0 0 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of ESR1 in Ishikawa from ENCODE 3 (ENCFF279JGE)\ parent encTfChipPk off\ shortLabel Ishikawa ESR1 2\ subGroups cellType=Ishikawa factor=ESR1\ track encTfChipPkENCFF279JGE\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day18R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_forward 1 481 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep3.CNhs14055.13444-144F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13444-144F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day18R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_forward 0 481 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep3.CNhs14055.13444-144F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13444-144F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF778BLL Ishikawa ESR1 3 narrowPeak Transcription Factor ChIP-seq Peaks of ESR1 in Ishikawa from ENCODE 3 (ENCFF778BLL) 0 481 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ESR1 in Ishikawa from ENCODE 3 (ENCFF778BLL)\ parent encTfChipPk off\ shortLabel Ishikawa ESR1 3\ subGroups cellType=Ishikawa factor=ESR1\ track encTfChipPkENCFF778BLL\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_tpm_rev IpsToNeuronControlDnC11-CRL2429Day18R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_reverse 1 482 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep3.CNhs14055.13444-144F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13444-144F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_ctss_rev IpsToNeuronControlDnC11-CRL2429Day18R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_reverse 0 482 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep3.CNhs14055.13444-144F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13444-144F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF519BOO Ishikawa NR3C1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in Ishikawa from ENCODE 3 (ENCFF519BOO) 0 482 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in Ishikawa from ENCODE 3 (ENCFF519BOO)\ parent encTfChipPk off\ shortLabel Ishikawa NR3C1 1\ subGroups cellType=Ishikawa factor=NR3C1\ track encTfChipPkENCFF519BOO\ encTfChipPkENCFF293OHT Ishikawa NR3C1 2 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in Ishikawa from ENCODE 3 (ENCFF293OHT) 0 483 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in Ishikawa from ENCODE 3 (ENCFF293OHT)\ parent encTfChipPk off\ shortLabel Ishikawa NR3C1 2\ subGroups cellType=Ishikawa factor=NR3C1\ track encTfChipPkENCFF293OHT\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_forward 1 483 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%201%29.CNhs11936.12260-130A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12260-130A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_forward 0 483 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%201%29.CNhs11936.12260-130A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12260-130A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF085HJD Ishikawa POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in Ishikawa from ENCODE 3 (ENCFF085HJD) 0 484 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in Ishikawa from ENCODE 3 (ENCFF085HJD)\ parent encTfChipPk off\ shortLabel Ishikawa POLR2A\ subGroups cellType=Ishikawa factor=POLR2A\ track encTfChipPkENCFF085HJD\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_tpm_rev LymphaticEndothelialCellsToVegfc_00hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_reverse 1 484 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%201%29.CNhs11936.12260-130A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12260-130A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_ctss_rev LymphaticEndothelialCellsToVegfc_00hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_reverse 0 484 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%201%29.CNhs11936.12260-130A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12260-130A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF869BYK K562 AFF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of AFF1 in K562 from ENCODE 3 (ENCFF869BYK) 0 485 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of AFF1 in K562 from ENCODE 3 (ENCFF869BYK)\ parent encTfChipPk off\ shortLabel K562 AFF1 1\ subGroups cellType=K562 factor=AFF1\ track encTfChipPkENCFF869BYK\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_forward 1 485 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%201%29.CNhs13157.12382-131E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12382-131E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_forward 0 485 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%201%29.CNhs13157.12382-131E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12382-131E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF489SKQ K562 AFF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of AFF1 in K562 from ENCODE 3 (ENCFF489SKQ) 0 486 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of AFF1 in K562 from ENCODE 3 (ENCFF489SKQ)\ parent encTfChipPk off\ shortLabel K562 AFF1 2\ subGroups cellType=K562 factor=AFF1\ track encTfChipPkENCFF489SKQ\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_tpm_rev LymphaticEndothelialCellsToVegfc_00hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_reverse 1 486 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%201%29.CNhs13157.12382-131E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12382-131E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_ctss_rev LymphaticEndothelialCellsToVegfc_00hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_reverse 0 486 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%201%29.CNhs13157.12382-131E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12382-131E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF100VYA K562 AGO1 narrowPeak Transcription Factor ChIP-seq Peaks of AGO1 in K562 from ENCODE 3 (ENCFF100VYA) 0 487 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of AGO1 in K562 from ENCODE 3 (ENCFF100VYA)\ parent encTfChipPk off\ shortLabel K562 AGO1\ subGroups cellType=K562 factor=AGO1\ track encTfChipPkENCFF100VYA\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_forward 1 487 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%201%20%29.CNhs13276.12504-133A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12504-133A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_forward 0 487 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%201%20%29.CNhs13276.12504-133A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12504-133A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF089PKE K562 ARHGAP35 narrowPeak Transcription Factor ChIP-seq Peaks of ARHGAP35 in K562 from ENCODE 3 (ENCFF089PKE) 0 488 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ARHGAP35 in K562 from ENCODE 3 (ENCFF089PKE)\ parent encTfChipPk off\ shortLabel K562 ARHGAP35\ subGroups cellType=K562 factor=ARHGAP35\ track encTfChipPkENCFF089PKE\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_tpm_rev LymphaticEndothelialCellsToVegfc_00hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_reverse 1 488 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%201%20%29.CNhs13276.12504-133A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12504-133A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_ctss_rev LymphaticEndothelialCellsToVegfc_00hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_reverse 0 488 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%201%20%29.CNhs13276.12504-133A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12504-133A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF249TYS K562 ARID1B narrowPeak Transcription Factor ChIP-seq Peaks of ARID1B in K562 from ENCODE 3 (ENCFF249TYS) 0 489 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ARID1B in K562 from ENCODE 3 (ENCFF249TYS)\ parent encTfChipPk off\ shortLabel K562 ARID1B\ subGroups cellType=K562 factor=ARID1B\ track encTfChipPkENCFF249TYS\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr15minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_forward 1 489 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep1%20%28MM%20XIX%20-%202%29.CNhs13100.12261-130A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12261-130A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr15minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_forward 0 489 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep1%20%28MM%20XIX%20-%202%29.CNhs13100.12261-130A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12261-130A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF344MKI K562 ARID2 narrowPeak Transcription Factor ChIP-seq Peaks of ARID2 in K562 from ENCODE 3 (ENCFF344MKI) 0 490 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ARID2 in K562 from ENCODE 3 (ENCFF344MKI)\ parent encTfChipPk off\ shortLabel K562 ARID2\ subGroups cellType=K562 factor=ARID2\ track encTfChipPkENCFF344MKI\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_tpm_rev LymphaticEndothelialCellsToVegfc_00hr15minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_reverse 1 490 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep1%20%28MM%20XIX%20-%202%29.CNhs13100.12261-130A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12261-130A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_ctss_rev LymphaticEndothelialCellsToVegfc_00hr15minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_reverse 0 490 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep1%20%28MM%20XIX%20-%202%29.CNhs13100.12261-130A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12261-130A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF757OML K562 ARID3A narrowPeak Transcription Factor ChIP-seq Peaks of ARID3A in K562 from ENCODE 3 (ENCFF757OML) 0 491 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ARID3A in K562 from ENCODE 3 (ENCFF757OML)\ parent encTfChipPk off\ shortLabel K562 ARID3A\ subGroups cellType=K562 factor=ARID3A\ track encTfChipPkENCFF757OML\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr15minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_forward 1 491 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep2%20%28MM%20XIV%20-%202%29.CNhs13158.12383-131E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12383-131E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr15minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_forward 0 491 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep2%20%28MM%20XIV%20-%202%29.CNhs13158.12383-131E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12383-131E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF655EFA K562 ARNT 1 narrowPeak Transcription Factor ChIP-seq Peaks of ARNT in K562 from ENCODE 3 (ENCFF655EFA) 0 492 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ARNT in K562 from ENCODE 3 (ENCFF655EFA)\ parent encTfChipPk off\ shortLabel K562 ARNT 1\ subGroups cellType=K562 factor=ARNT\ track encTfChipPkENCFF655EFA\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_tpm_rev LymphaticEndothelialCellsToVegfc_00hr15minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_reverse 1 492 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep2%20%28MM%20XIV%20-%202%29.CNhs13158.12383-131E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12383-131E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_ctss_rev LymphaticEndothelialCellsToVegfc_00hr15minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_reverse 0 492 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep2%20%28MM%20XIV%20-%202%29.CNhs13158.12383-131E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12383-131E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF447FIO K562 ARNT 2 narrowPeak Transcription Factor ChIP-seq Peaks of ARNT in K562 from ENCODE 3 (ENCFF447FIO) 0 493 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ARNT in K562 from ENCODE 3 (ENCFF447FIO)\ parent encTfChipPk off\ shortLabel K562 ARNT 2\ subGroups cellType=K562 factor=ARNT\ track encTfChipPkENCFF447FIO\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr15minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_forward 1 493 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep3%20%28MM%20XXII%20-%202%29.CNhs13277.12505-133A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12505-133A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr15minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_forward 0 493 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep3%20%28MM%20XXII%20-%202%29.CNhs13277.12505-133A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12505-133A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF913AQF K562 ARNT 3 narrowPeak Transcription Factor ChIP-seq Peaks of ARNT in K562 from ENCODE 3 (ENCFF913AQF) 0 494 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ARNT in K562 from ENCODE 3 (ENCFF913AQF)\ parent encTfChipPk off\ shortLabel K562 ARNT 3\ subGroups cellType=K562 factor=ARNT\ track encTfChipPkENCFF913AQF\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_tpm_rev LymphaticEndothelialCellsToVegfc_00hr15minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_reverse 1 494 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep3%20%28MM%20XXII%20-%202%29.CNhs13277.12505-133A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12505-133A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_ctss_rev LymphaticEndothelialCellsToVegfc_00hr15minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_reverse 0 494 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep3%20%28MM%20XXII%20-%202%29.CNhs13277.12505-133A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12505-133A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF958YSG K562 ASH1L narrowPeak Transcription Factor ChIP-seq Peaks of ASH1L in K562 from ENCODE 3 (ENCFF958YSG) 0 495 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ASH1L in K562 from ENCODE 3 (ENCFF958YSG)\ parent encTfChipPk off\ shortLabel K562 ASH1L\ subGroups cellType=K562 factor=ASH1L\ track encTfChipPkENCFF958YSG\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr30minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_forward 1 495 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%203%29.CNhs13101.12262-130A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12262-130A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr30minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_forward 0 495 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%203%29.CNhs13101.12262-130A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12262-130A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF803FHN K562 ATF2 narrowPeak Transcription Factor ChIP-seq Peaks of ATF2 in K562 from ENCODE 3 (ENCFF803FHN) 0 496 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ATF2 in K562 from ENCODE 3 (ENCFF803FHN)\ parent encTfChipPk off\ shortLabel K562 ATF2\ subGroups cellType=K562 factor=ATF2\ track encTfChipPkENCFF803FHN\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_tpm_rev LymphaticEndothelialCellsToVegfc_00hr30minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_reverse 1 496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%203%29.CNhs13101.12262-130A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12262-130A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_ctss_rev LymphaticEndothelialCellsToVegfc_00hr30minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_reverse 0 496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%203%29.CNhs13101.12262-130A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12262-130A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF467WOR K562 ATF3 1 narrowPeak Transcription Factor ChIP-seq Peaks of ATF3 in K562 from ENCODE 3 (ENCFF467WOR) 0 497 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ATF3 in K562 from ENCODE 3 (ENCFF467WOR)\ parent encTfChipPk off\ shortLabel K562 ATF3 1\ subGroups cellType=K562 factor=ATF3\ track encTfChipPkENCFF467WOR\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr30minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_forward 1 497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%203%29.CNhs13159.12384-131E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12384-131E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr30minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_forward 0 497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%203%29.CNhs13159.12384-131E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12384-131E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF937OKC K562 ATF3 2 narrowPeak Transcription Factor ChIP-seq Peaks of ATF3 in K562 from ENCODE 3 (ENCFF937OKC) 0 498 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ATF3 in K562 from ENCODE 3 (ENCFF937OKC)\ parent encTfChipPk off\ shortLabel K562 ATF3 2\ subGroups cellType=K562 factor=ATF3\ track encTfChipPkENCFF937OKC\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_tpm_rev LymphaticEndothelialCellsToVegfc_00hr30minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_reverse 1 498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%203%29.CNhs13159.12384-131E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12384-131E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_ctss_rev LymphaticEndothelialCellsToVegfc_00hr30minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_reverse 0 498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%203%29.CNhs13159.12384-131E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12384-131E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF182MNO K562 ATF4 narrowPeak Transcription Factor ChIP-seq Peaks of ATF4 in K562 from ENCODE 3 (ENCFF182MNO) 0 499 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ATF4 in K562 from ENCODE 3 (ENCFF182MNO)\ parent encTfChipPk off\ shortLabel K562 ATF4\ subGroups cellType=K562 factor=ATF4\ track encTfChipPkENCFF182MNO\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr30minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_forward 1 499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%203%29.CNhs13278.12506-133A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12506-133A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr30minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_forward 0 499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%203%29.CNhs13278.12506-133A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12506-133A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF371SJR K562 ATF7 narrowPeak Transcription Factor ChIP-seq Peaks of ATF7 in K562 from ENCODE 3 (ENCFF371SJR) 0 500 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ATF7 in K562 from ENCODE 3 (ENCFF371SJR)\ parent encTfChipPk off\ shortLabel K562 ATF7\ subGroups cellType=K562 factor=ATF7\ track encTfChipPkENCFF371SJR\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_tpm_rev LymphaticEndothelialCellsToVegfc_00hr30minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_reverse 1 500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%203%29.CNhs13278.12506-133A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12506-133A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_ctss_rev LymphaticEndothelialCellsToVegfc_00hr30minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_reverse 0 500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%203%29.CNhs13278.12506-133A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12506-133A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF543FNN K562 BACH1 narrowPeak Transcription Factor ChIP-seq Peaks of BACH1 in K562 from ENCODE 3 (ENCFF543FNN) 0 501 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of BACH1 in K562 from ENCODE 3 (ENCFF543FNN)\ parent encTfChipPk off\ shortLabel K562 BACH1\ subGroups cellType=K562 factor=BACH1\ track encTfChipPkENCFF543FNN\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr45minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_forward 1 501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep1%20%28MM%20XIX%20-%204%29.CNhs13102.12263-130A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12263-130A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr45minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_forward 0 501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep1%20%28MM%20XIX%20-%204%29.CNhs13102.12263-130A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12263-130A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF186JKG K562 BCOR narrowPeak Transcription Factor ChIP-seq Peaks of BCOR in K562 from ENCODE 3 (ENCFF186JKG) 0 502 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of BCOR in K562 from ENCODE 3 (ENCFF186JKG)\ parent encTfChipPk off\ shortLabel K562 BCOR\ subGroups cellType=K562 factor=BCOR\ track encTfChipPkENCFF186JKG\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_tpm_rev LymphaticEndothelialCellsToVegfc_00hr45minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_reverse 1 502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep1%20%28MM%20XIX%20-%204%29.CNhs13102.12263-130A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12263-130A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_ctss_rev LymphaticEndothelialCellsToVegfc_00hr45minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_reverse 0 502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep1%20%28MM%20XIX%20-%204%29.CNhs13102.12263-130A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12263-130A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF477JTV K562 BHLHE40 narrowPeak Transcription Factor ChIP-seq Peaks of BHLHE40 in K562 from ENCODE 3 (ENCFF477JTV) 0 503 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of BHLHE40 in K562 from ENCODE 3 (ENCFF477JTV)\ parent encTfChipPk off\ shortLabel K562 BHLHE40\ subGroups cellType=K562 factor=BHLHE40\ track encTfChipPkENCFF477JTV\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr45minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_forward 1 503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep2%20%28MM%20XIV%20-%204%29.CNhs13160.12385-131E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12385-131E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr45minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_forward 0 503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep2%20%28MM%20XIV%20-%204%29.CNhs13160.12385-131E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12385-131E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF352DRR K562 BMI1 narrowPeak Transcription Factor ChIP-seq Peaks of BMI1 in K562 from ENCODE 3 (ENCFF352DRR) 0 504 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of BMI1 in K562 from ENCODE 3 (ENCFF352DRR)\ parent encTfChipPk off\ shortLabel K562 BMI1\ subGroups cellType=K562 factor=BMI1\ track encTfChipPkENCFF352DRR\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_tpm_rev LymphaticEndothelialCellsToVegfc_00hr45minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_reverse 1 504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep2%20%28MM%20XIV%20-%204%29.CNhs13160.12385-131E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12385-131E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_ctss_rev LymphaticEndothelialCellsToVegfc_00hr45minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_reverse 0 504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep2%20%28MM%20XIV%20-%204%29.CNhs13160.12385-131E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12385-131E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF652NES K562 BRCA1 narrowPeak Transcription Factor ChIP-seq Peaks of BRCA1 in K562 from ENCODE 3 (ENCFF652NES) 0 505 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of BRCA1 in K562 from ENCODE 3 (ENCFF652NES)\ parent encTfChipPk off\ shortLabel K562 BRCA1\ subGroups cellType=K562 factor=BRCA1\ track encTfChipPkENCFF652NES\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr45minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_forward 1 505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep3%20%28MM%20XXII%20-%204%29.CNhs13279.12507-133A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12507-133A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr45minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_forward 0 505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep3%20%28MM%20XXII%20-%204%29.CNhs13279.12507-133A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12507-133A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF806CQB K562 BRD4 narrowPeak Transcription Factor ChIP-seq Peaks of BRD4 in K562 from ENCODE 3 (ENCFF806CQB) 0 506 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of BRD4 in K562 from ENCODE 3 (ENCFF806CQB)\ parent encTfChipPk off\ shortLabel K562 BRD4\ subGroups cellType=K562 factor=BRD4\ track encTfChipPkENCFF806CQB\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_tpm_rev LymphaticEndothelialCellsToVegfc_00hr45minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_reverse 1 506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep3%20%28MM%20XXII%20-%204%29.CNhs13279.12507-133A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12507-133A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_ctss_rev LymphaticEndothelialCellsToVegfc_00hr45minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_reverse 0 506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep3%20%28MM%20XXII%20-%204%29.CNhs13279.12507-133A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12507-133A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF411RMT K562 BRD9 narrowPeak Transcription Factor ChIP-seq Peaks of BRD9 in K562 from ENCODE 3 (ENCFF411RMT) 0 507 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of BRD9 in K562 from ENCODE 3 (ENCFF411RMT)\ parent encTfChipPk off\ shortLabel K562 BRD9\ subGroups cellType=K562 factor=BRD9\ track encTfChipPkENCFF411RMT\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_forward 1 507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%205%29.CNhs13103.12264-130A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12264-130A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_forward 0 507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%205%29.CNhs13103.12264-130A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12264-130A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF104MXG K562 C11orf30 narrowPeak Transcription Factor ChIP-seq Peaks of C11orf30 in K562 from ENCODE 3 (ENCFF104MXG) 0 508 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of C11orf30 in K562 from ENCODE 3 (ENCFF104MXG)\ parent encTfChipPk off\ shortLabel K562 C11orf30\ subGroups cellType=K562 factor=C11orf30\ track encTfChipPkENCFF104MXG\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_tpm_rev LymphaticEndothelialCellsToVegfc_01hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_reverse 1 508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%205%29.CNhs13103.12264-130A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12264-130A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_ctss_rev LymphaticEndothelialCellsToVegfc_01hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_reverse 0 508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%205%29.CNhs13103.12264-130A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12264-130A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF419PEK K562 CBFA2T2 narrowPeak Transcription Factor ChIP-seq Peaks of CBFA2T2 in K562 from ENCODE 3 (ENCFF419PEK) 0 509 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CBFA2T2 in K562 from ENCODE 3 (ENCFF419PEK)\ parent encTfChipPk off\ shortLabel K562 CBFA2T2\ subGroups cellType=K562 factor=CBFA2T2\ track encTfChipPkENCFF419PEK\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_forward 1 509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%205%29.CNhs13161.12386-131F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12386-131F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_forward 0 509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%205%29.CNhs13161.12386-131F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12386-131F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF153IFH K562 CBFA2T3 narrowPeak Transcription Factor ChIP-seq Peaks of CBFA2T3 in K562 from ENCODE 3 (ENCFF153IFH) 0 510 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CBFA2T3 in K562 from ENCODE 3 (ENCFF153IFH)\ parent encTfChipPk off\ shortLabel K562 CBFA2T3\ subGroups cellType=K562 factor=CBFA2T3\ track encTfChipPkENCFF153IFH\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_tpm_rev LymphaticEndothelialCellsToVegfc_01hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_reverse 1 510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%205%29.CNhs13161.12386-131F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12386-131F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_ctss_rev LymphaticEndothelialCellsToVegfc_01hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_reverse 0 510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%205%29.CNhs13161.12386-131F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12386-131F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF163FLA K562 CBX1 narrowPeak Transcription Factor ChIP-seq Peaks of CBX1 in K562 from ENCODE 3 (ENCFF163FLA) 0 511 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CBX1 in K562 from ENCODE 3 (ENCFF163FLA)\ parent encTfChipPk off\ shortLabel K562 CBX1\ subGroups cellType=K562 factor=CBX1\ track encTfChipPkENCFF163FLA\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_forward 1 511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%205%29.CNhs13280.12508-133A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12508-133A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_forward 0 511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%205%29.CNhs13280.12508-133A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12508-133A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF378YKS K562 CBX3 1 narrowPeak Transcription Factor ChIP-seq Peaks of CBX3 in K562 from ENCODE 3 (ENCFF378YKS) 0 512 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CBX3 in K562 from ENCODE 3 (ENCFF378YKS)\ parent encTfChipPk off\ shortLabel K562 CBX3 1\ subGroups cellType=K562 factor=CBX3\ track encTfChipPkENCFF378YKS\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_tpm_rev LymphaticEndothelialCellsToVegfc_01hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_reverse 1 512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%205%29.CNhs13280.12508-133A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12508-133A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_ctss_rev LymphaticEndothelialCellsToVegfc_01hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_reverse 0 512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%205%29.CNhs13280.12508-133A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12508-133A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF951BQB K562 CBX3 2 narrowPeak Transcription Factor ChIP-seq Peaks of CBX3 in K562 from ENCODE 3 (ENCFF951BQB) 0 513 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CBX3 in K562 from ENCODE 3 (ENCFF951BQB)\ parent encTfChipPk off\ shortLabel K562 CBX3 2\ subGroups cellType=K562 factor=CBX3\ track encTfChipPkENCFF951BQB\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr20minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_forward 1 513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep1%20%28MM%20XIX%20-%206%29.CNhs13104.12265-130A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12265-130A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr20minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_forward 0 513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep1%20%28MM%20XIX%20-%206%29.CNhs13104.12265-130A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12265-130A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF403TAE K562 CBX5 narrowPeak Transcription Factor ChIP-seq Peaks of CBX5 in K562 from ENCODE 3 (ENCFF403TAE) 0 514 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CBX5 in K562 from ENCODE 3 (ENCFF403TAE)\ parent encTfChipPk off\ shortLabel K562 CBX5\ subGroups cellType=K562 factor=CBX5\ track encTfChipPkENCFF403TAE\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_tpm_rev LymphaticEndothelialCellsToVegfc_01hr20minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_reverse 1 514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep1%20%28MM%20XIX%20-%206%29.CNhs13104.12265-130A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12265-130A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_ctss_rev LymphaticEndothelialCellsToVegfc_01hr20minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_reverse 0 514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep1%20%28MM%20XIX%20-%206%29.CNhs13104.12265-130A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12265-130A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF180TUM K562 CC2D1A narrowPeak Transcription Factor ChIP-seq Peaks of CC2D1A in K562 from ENCODE 3 (ENCFF180TUM) 0 515 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CC2D1A in K562 from ENCODE 3 (ENCFF180TUM)\ parent encTfChipPk off\ shortLabel K562 CC2D1A\ subGroups cellType=K562 factor=CC2D1A\ track encTfChipPkENCFF180TUM\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr20minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_forward 1 515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep2%20%28MM%20XIV%20-%206%29.CNhs13162.12387-131F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12387-131F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr20minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_forward 0 515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep2%20%28MM%20XIV%20-%206%29.CNhs13162.12387-131F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12387-131F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF704PGT K562 CCAR2 narrowPeak Transcription Factor ChIP-seq Peaks of CCAR2 in K562 from ENCODE 3 (ENCFF704PGT) 0 516 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CCAR2 in K562 from ENCODE 3 (ENCFF704PGT)\ parent encTfChipPk off\ shortLabel K562 CCAR2\ subGroups cellType=K562 factor=CCAR2\ track encTfChipPkENCFF704PGT\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_tpm_rev LymphaticEndothelialCellsToVegfc_01hr20minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_reverse 1 516 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep2%20%28MM%20XIV%20-%206%29.CNhs13162.12387-131F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12387-131F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_ctss_rev LymphaticEndothelialCellsToVegfc_01hr20minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_reverse 0 516 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep2%20%28MM%20XIV%20-%206%29.CNhs13162.12387-131F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12387-131F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF384ALH K562 CDC5L narrowPeak Transcription Factor ChIP-seq Peaks of CDC5L in K562 from ENCODE 3 (ENCFF384ALH) 0 517 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CDC5L in K562 from ENCODE 3 (ENCFF384ALH)\ parent encTfChipPk off\ shortLabel K562 CDC5L\ subGroups cellType=K562 factor=CDC5L\ track encTfChipPkENCFF384ALH\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr20minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_forward 1 517 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep3%20%28MM%20XXII%20-%206%29.CNhs13281.12509-133A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12509-133A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr20minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_forward 0 517 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep3%20%28MM%20XXII%20-%206%29.CNhs13281.12509-133A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12509-133A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF321KQD K562 CEBPB narrowPeak Transcription Factor ChIP-seq Peaks of CEBPB in K562 from ENCODE 3 (ENCFF321KQD) 0 518 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CEBPB in K562 from ENCODE 3 (ENCFF321KQD)\ parent encTfChipPk off\ shortLabel K562 CEBPB\ subGroups cellType=K562 factor=CEBPB\ track encTfChipPkENCFF321KQD\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_tpm_rev LymphaticEndothelialCellsToVegfc_01hr20minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_reverse 1 518 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep3%20%28MM%20XXII%20-%206%29.CNhs13281.12509-133A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12509-133A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_ctss_rev LymphaticEndothelialCellsToVegfc_01hr20minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_reverse 0 518 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep3%20%28MM%20XXII%20-%206%29.CNhs13281.12509-133A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12509-133A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF646MEF K562 CHAMP1 1 narrowPeak Transcription Factor ChIP-seq Peaks of CHAMP1 in K562 from ENCODE 3 (ENCFF646MEF) 0 519 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CHAMP1 in K562 from ENCODE 3 (ENCFF646MEF)\ parent encTfChipPk off\ shortLabel K562 CHAMP1 1\ subGroups cellType=K562 factor=CHAMP1\ track encTfChipPkENCFF646MEF\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr40minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_forward 1 519 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep1%20%28MM%20XIX%20-%207%29.CNhs13105.12266-130A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12266-130A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr40minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_forward 0 519 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep1%20%28MM%20XIX%20-%207%29.CNhs13105.12266-130A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12266-130A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF919KNQ K562 CHAMP1 2 narrowPeak Transcription Factor ChIP-seq Peaks of CHAMP1 in K562 from ENCODE 3 (ENCFF919KNQ) 0 520 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CHAMP1 in K562 from ENCODE 3 (ENCFF919KNQ)\ parent encTfChipPk off\ shortLabel K562 CHAMP1 2\ subGroups cellType=K562 factor=CHAMP1\ track encTfChipPkENCFF919KNQ\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_tpm_rev LymphaticEndothelialCellsToVegfc_01hr40minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_reverse 1 520 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep1%20%28MM%20XIX%20-%207%29.CNhs13105.12266-130A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12266-130A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_ctss_rev LymphaticEndothelialCellsToVegfc_01hr40minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_reverse 0 520 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep1%20%28MM%20XIX%20-%207%29.CNhs13105.12266-130A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12266-130A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF552EBC K562 COPS2 narrowPeak Transcription Factor ChIP-seq Peaks of COPS2 in K562 from ENCODE 3 (ENCFF552EBC) 0 521 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of COPS2 in K562 from ENCODE 3 (ENCFF552EBC)\ parent encTfChipPk off\ shortLabel K562 COPS2\ subGroups cellType=K562 factor=COPS2\ track encTfChipPkENCFF552EBC\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr40minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_forward 1 521 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep2%20%28MM%20XIV%20-%207%29.CNhs13163.12388-131F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12388-131F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr40minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_forward 0 521 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep2%20%28MM%20XIV%20-%207%29.CNhs13163.12388-131F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12388-131F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF566HGU K562 CREB3L1 narrowPeak Transcription Factor ChIP-seq Peaks of CREB3L1 in K562 from ENCODE 3 (ENCFF566HGU) 0 522 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CREB3L1 in K562 from ENCODE 3 (ENCFF566HGU)\ parent encTfChipPk off\ shortLabel K562 CREB3L1\ subGroups cellType=K562 factor=CREB3L1\ track encTfChipPkENCFF566HGU\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_tpm_rev LymphaticEndothelialCellsToVegfc_01hr40minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_reverse 1 522 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep2%20%28MM%20XIV%20-%207%29.CNhs13163.12388-131F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12388-131F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_ctss_rev LymphaticEndothelialCellsToVegfc_01hr40minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_reverse 0 522 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep2%20%28MM%20XIV%20-%207%29.CNhs13163.12388-131F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12388-131F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF678FRK K562 CREBBP narrowPeak Transcription Factor ChIP-seq Peaks of CREBBP in K562 from ENCODE 3 (ENCFF678FRK) 0 523 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CREBBP in K562 from ENCODE 3 (ENCFF678FRK)\ parent encTfChipPk off\ shortLabel K562 CREBBP\ subGroups cellType=K562 factor=CREBBP\ track encTfChipPkENCFF678FRK\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr40minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_forward 1 523 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep3%20%28MM%20XXII%20-%207%29.CNhs13282.12510-133A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12510-133A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr40minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_forward 0 523 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep3%20%28MM%20XXII%20-%207%29.CNhs13282.12510-133A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12510-133A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF021XJN K562 CREM narrowPeak Transcription Factor ChIP-seq Peaks of CREM in K562 from ENCODE 3 (ENCFF021XJN) 0 524 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CREM in K562 from ENCODE 3 (ENCFF021XJN)\ parent encTfChipPk off\ shortLabel K562 CREM\ subGroups cellType=K562 factor=CREM\ track encTfChipPkENCFF021XJN\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_tpm_rev LymphaticEndothelialCellsToVegfc_01hr40minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_reverse 1 524 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep3%20%28MM%20XXII%20-%207%29.CNhs13282.12510-133A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12510-133A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_ctss_rev LymphaticEndothelialCellsToVegfc_01hr40minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_reverse 0 524 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep3%20%28MM%20XXII%20-%207%29.CNhs13282.12510-133A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12510-133A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF349UTF K562 CTBP1 narrowPeak Transcription Factor ChIP-seq Peaks of CTBP1 in K562 from ENCODE 3 (ENCFF349UTF) 0 525 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CTBP1 in K562 from ENCODE 3 (ENCFF349UTF)\ parent encTfChipPk off\ shortLabel K562 CTBP1\ subGroups cellType=K562 factor=CTBP1\ track encTfChipPkENCFF349UTF\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_tpm_fwd LymphaticEndothelialCellsToVegfc_02hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_forward 1 525 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%208%29.CNhs13106.12267-130A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12267-130A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_ctss_fwd LymphaticEndothelialCellsToVegfc_02hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_forward 0 525 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%208%29.CNhs13106.12267-130A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12267-130A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF843VHC K562 CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in K562 from ENCODE 3 (ENCFF843VHC) 0 526 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in K562 from ENCODE 3 (ENCFF843VHC)\ parent encTfChipPk on\ shortLabel K562 CTCF 1\ subGroups cellType=K562 factor=CTCF\ track encTfChipPkENCFF843VHC\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_tpm_rev LymphaticEndothelialCellsToVegfc_02hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_reverse 1 526 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%208%29.CNhs13106.12267-130A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12267-130A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_ctss_rev LymphaticEndothelialCellsToVegfc_02hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_reverse 0 526 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%208%29.CNhs13106.12267-130A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12267-130A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF519CXF K562 CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in K562 from ENCODE 3 (ENCFF519CXF) 0 527 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in K562 from ENCODE 3 (ENCFF519CXF)\ parent encTfChipPk off\ shortLabel K562 CTCF 2\ subGroups cellType=K562 factor=CTCF\ track encTfChipPkENCFF519CXF\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_tpm_fwd LymphaticEndothelialCellsToVegfc_02hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_forward 1 527 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%208%29.CNhs13164.12389-131F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12389-131F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_ctss_fwd LymphaticEndothelialCellsToVegfc_02hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_forward 0 527 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%208%29.CNhs13164.12389-131F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12389-131F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF119XFJ K562 CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in K562 from ENCODE 3 (ENCFF119XFJ) 0 528 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in K562 from ENCODE 3 (ENCFF119XFJ)\ parent encTfChipPk off\ shortLabel K562 CTCF 3\ subGroups cellType=K562 factor=CTCF\ track encTfChipPkENCFF119XFJ\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_tpm_rev LymphaticEndothelialCellsToVegfc_02hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_reverse 1 528 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%208%29.CNhs13164.12389-131F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12389-131F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_ctss_rev LymphaticEndothelialCellsToVegfc_02hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_reverse 0 528 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%208%29.CNhs13164.12389-131F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12389-131F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF396BZQ K562 CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in K562 from ENCODE 3 (ENCFF396BZQ) 0 529 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in K562 from ENCODE 3 (ENCFF396BZQ)\ parent encTfChipPk off\ shortLabel K562 CTCF 4\ subGroups cellType=K562 factor=CTCF\ track encTfChipPkENCFF396BZQ\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_tpm_fwd LymphaticEndothelialCellsToVegfc_02hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_forward 1 529 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%208%29.CNhs13283.12511-133A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12511-133A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_ctss_fwd LymphaticEndothelialCellsToVegfc_02hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_forward 0 529 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%208%29.CNhs13283.12511-133A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12511-133A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF556HMX K562 CUX1 narrowPeak Transcription Factor ChIP-seq Peaks of CUX1 in K562 from ENCODE 3 (ENCFF556HMX) 0 530 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CUX1 in K562 from ENCODE 3 (ENCFF556HMX)\ parent encTfChipPk off\ shortLabel K562 CUX1\ subGroups cellType=K562 factor=CUX1\ track encTfChipPkENCFF556HMX\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_tpm_rev LymphaticEndothelialCellsToVegfc_02hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_reverse 1 530 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%208%29.CNhs13283.12511-133A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12511-133A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_ctss_rev LymphaticEndothelialCellsToVegfc_02hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_reverse 0 530 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%208%29.CNhs13283.12511-133A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12511-133A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF870LJV K562 DACH1 narrowPeak Transcription Factor ChIP-seq Peaks of DACH1 in K562 from ENCODE 3 (ENCFF870LJV) 0 531 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of DACH1 in K562 from ENCODE 3 (ENCFF870LJV)\ parent encTfChipPk off\ shortLabel K562 DACH1\ subGroups cellType=K562 factor=DACH1\ track encTfChipPkENCFF870LJV\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_tpm_fwd LymphaticEndothelialCellsToVegfc_02hr30minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_forward 1 531 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%209%29.CNhs13107.12268-130A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12268-130A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_ctss_fwd LymphaticEndothelialCellsToVegfc_02hr30minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_forward 0 531 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%209%29.CNhs13107.12268-130A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12268-130A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF532HCE K562 DEAF1 narrowPeak Transcription Factor ChIP-seq Peaks of DEAF1 in K562 from ENCODE 3 (ENCFF532HCE) 0 532 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of DEAF1 in K562 from ENCODE 3 (ENCFF532HCE)\ parent encTfChipPk off\ shortLabel K562 DEAF1\ subGroups cellType=K562 factor=DEAF1\ track encTfChipPkENCFF532HCE\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_tpm_rev LymphaticEndothelialCellsToVegfc_02hr30minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_reverse 1 532 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%209%29.CNhs13107.12268-130A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12268-130A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_ctss_rev LymphaticEndothelialCellsToVegfc_02hr30minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_reverse 0 532 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%209%29.CNhs13107.12268-130A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12268-130A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF549TVW K562 DNMT1 narrowPeak Transcription Factor ChIP-seq Peaks of DNMT1 in K562 from ENCODE 3 (ENCFF549TVW) 0 533 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of DNMT1 in K562 from ENCODE 3 (ENCFF549TVW)\ parent encTfChipPk off\ shortLabel K562 DNMT1\ subGroups cellType=K562 factor=DNMT1\ track encTfChipPkENCFF549TVW\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_tpm_fwd LymphaticEndothelialCellsToVegfc_02hr30minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_forward 1 533 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%209%29.CNhs13165.12390-131F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12390-131F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_ctss_fwd LymphaticEndothelialCellsToVegfc_02hr30minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_forward 0 533 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%209%29.CNhs13165.12390-131F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12390-131F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF537VKZ K562 DPF2 1 narrowPeak Transcription Factor ChIP-seq Peaks of DPF2 in K562 from ENCODE 3 (ENCFF537VKZ) 0 534 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of DPF2 in K562 from ENCODE 3 (ENCFF537VKZ)\ parent encTfChipPk off\ shortLabel K562 DPF2 1\ subGroups cellType=K562 factor=DPF2\ track encTfChipPkENCFF537VKZ\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_tpm_rev LymphaticEndothelialCellsToVegfc_02hr30minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_reverse 1 534 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%209%29.CNhs13165.12390-131F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12390-131F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_ctss_rev LymphaticEndothelialCellsToVegfc_02hr30minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_reverse 0 534 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%209%29.CNhs13165.12390-131F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12390-131F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF217ZTP K562 DPF2 2 narrowPeak Transcription Factor ChIP-seq Peaks of DPF2 in K562 from ENCODE 3 (ENCFF217ZTP) 0 535 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of DPF2 in K562 from ENCODE 3 (ENCFF217ZTP)\ parent encTfChipPk off\ shortLabel K562 DPF2 2\ subGroups cellType=K562 factor=DPF2\ track encTfChipPkENCFF217ZTP\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_tpm_fwd LymphaticEndothelialCellsToVegfc_02hr30minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_forward 1 535 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%209%29.CNhs13284.12512-133B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12512-133B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_ctss_fwd LymphaticEndothelialCellsToVegfc_02hr30minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_forward 0 535 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%209%29.CNhs13284.12512-133B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12512-133B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF134JLR K562 E2F1 1 narrowPeak Transcription Factor ChIP-seq Peaks of E2F1 in K562 from ENCODE 3 (ENCFF134JLR) 0 536 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of E2F1 in K562 from ENCODE 3 (ENCFF134JLR)\ parent encTfChipPk off\ shortLabel K562 E2F1 1\ subGroups cellType=K562 factor=E2F1\ track encTfChipPkENCFF134JLR\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_tpm_rev LymphaticEndothelialCellsToVegfc_02hr30minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_reverse 1 536 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%209%29.CNhs13284.12512-133B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12512-133B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_ctss_rev LymphaticEndothelialCellsToVegfc_02hr30minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_reverse 0 536 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%209%29.CNhs13284.12512-133B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12512-133B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF445VTT K562 E2F1 2 narrowPeak Transcription Factor ChIP-seq Peaks of E2F1 in K562 from ENCODE 3 (ENCFF445VTT) 0 537 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of E2F1 in K562 from ENCODE 3 (ENCFF445VTT)\ parent encTfChipPk off\ shortLabel K562 E2F1 2\ subGroups cellType=K562 factor=E2F1\ track encTfChipPkENCFF445VTT\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_tpm_fwd LymphaticEndothelialCellsToVegfc_03hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_forward 1 537 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%2010%29.CNhs13108.12269-130B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12269-130B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_ctss_fwd LymphaticEndothelialCellsToVegfc_03hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_forward 0 537 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%2010%29.CNhs13108.12269-130B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12269-130B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF533GSH K562 E2F6 narrowPeak Transcription Factor ChIP-seq Peaks of E2F6 in K562 from ENCODE 3 (ENCFF533GSH) 0 538 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of E2F6 in K562 from ENCODE 3 (ENCFF533GSH)\ parent encTfChipPk off\ shortLabel K562 E2F6\ subGroups cellType=K562 factor=E2F6\ track encTfChipPkENCFF533GSH\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_tpm_rev LymphaticEndothelialCellsToVegfc_03hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_reverse 1 538 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%2010%29.CNhs13108.12269-130B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12269-130B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_ctss_rev LymphaticEndothelialCellsToVegfc_03hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_reverse 0 538 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%2010%29.CNhs13108.12269-130B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12269-130B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF013EHI K562 E2F7 narrowPeak Transcription Factor ChIP-seq Peaks of E2F7 in K562 from ENCODE 3 (ENCFF013EHI) 0 539 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of E2F7 in K562 from ENCODE 3 (ENCFF013EHI)\ parent encTfChipPk off\ shortLabel K562 E2F7\ subGroups cellType=K562 factor=E2F7\ track encTfChipPkENCFF013EHI\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_tpm_fwd LymphaticEndothelialCellsToVegfc_03hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_forward 1 539 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%2010%29.CNhs13166.12391-131F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12391-131F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_ctss_fwd LymphaticEndothelialCellsToVegfc_03hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_forward 0 539 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%2010%29.CNhs13166.12391-131F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12391-131F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF171WWF K562 E2F8 narrowPeak Transcription Factor ChIP-seq Peaks of E2F8 in K562 from ENCODE 3 (ENCFF171WWF) 0 540 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of E2F8 in K562 from ENCODE 3 (ENCFF171WWF)\ parent encTfChipPk off\ shortLabel K562 E2F8\ subGroups cellType=K562 factor=E2F8\ track encTfChipPkENCFF171WWF\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_tpm_rev LymphaticEndothelialCellsToVegfc_03hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_reverse 1 540 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%2010%29.CNhs13166.12391-131F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12391-131F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_ctss_rev LymphaticEndothelialCellsToVegfc_03hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_reverse 0 540 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%2010%29.CNhs13166.12391-131F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12391-131F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF752KNU K562 E4F1 narrowPeak Transcription Factor ChIP-seq Peaks of E4F1 in K562 from ENCODE 3 (ENCFF752KNU) 0 541 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of E4F1 in K562 from ENCODE 3 (ENCFF752KNU)\ parent encTfChipPk off\ shortLabel K562 E4F1\ subGroups cellType=K562 factor=E4F1\ track encTfChipPkENCFF752KNU\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_tpm_fwd LymphaticEndothelialCellsToVegfc_03hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_forward 1 541 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%2010%29.CNhs13285.12513-133B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12513-133B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_ctss_fwd LymphaticEndothelialCellsToVegfc_03hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_forward 0 541 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%2010%29.CNhs13285.12513-133B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12513-133B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF375RDB K562 EGR1 1 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in K562 from ENCODE 3 (ENCFF375RDB) 0 542 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of EGR1 in K562 from ENCODE 3 (ENCFF375RDB)\ parent encTfChipPk off\ shortLabel K562 EGR1 1\ subGroups cellType=K562 factor=EGR1\ track encTfChipPkENCFF375RDB\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_tpm_rev LymphaticEndothelialCellsToVegfc_03hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_reverse 1 542 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%2010%29.CNhs13285.12513-133B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12513-133B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_ctss_rev LymphaticEndothelialCellsToVegfc_03hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_reverse 0 542 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%2010%29.CNhs13285.12513-133B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12513-133B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF175VSS K562 EGR1 2 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in K562 from ENCODE 3 (ENCFF175VSS) 0 543 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of EGR1 in K562 from ENCODE 3 (ENCFF175VSS)\ parent encTfChipPk off\ shortLabel K562 EGR1 2\ subGroups cellType=K562 factor=EGR1\ track encTfChipPkENCFF175VSS\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_tpm_fwd LymphaticEndothelialCellsToVegfc_03hr30minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_forward 1 543 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%2011%29.CNhs13109.12270-130B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12270-130B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_ctss_fwd LymphaticEndothelialCellsToVegfc_03hr30minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_forward 0 543 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%2011%29.CNhs13109.12270-130B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12270-130B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF561OGS K562 EGR1 3 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in K562 from ENCODE 3 (ENCFF561OGS) 0 544 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of EGR1 in K562 from ENCODE 3 (ENCFF561OGS)\ parent encTfChipPk off\ shortLabel K562 EGR1 3\ subGroups cellType=K562 factor=EGR1\ track encTfChipPkENCFF561OGS\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_tpm_rev LymphaticEndothelialCellsToVegfc_03hr30minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_reverse 1 544 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%2011%29.CNhs13109.12270-130B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12270-130B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_ctss_rev LymphaticEndothelialCellsToVegfc_03hr30minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_reverse 0 544 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%2011%29.CNhs13109.12270-130B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12270-130B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF682XPD K562 EHMT2 narrowPeak Transcription Factor ChIP-seq Peaks of EHMT2 in K562 from ENCODE 3 (ENCFF682XPD) 0 545 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of EHMT2 in K562 from ENCODE 3 (ENCFF682XPD)\ parent encTfChipPk off\ shortLabel K562 EHMT2\ subGroups cellType=K562 factor=EHMT2\ track encTfChipPkENCFF682XPD\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_tpm_fwd LymphaticEndothelialCellsToVegfc_03hr30minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_forward 1 545 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%2011%29.CNhs13168.12392-131F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12392-131F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_ctss_fwd LymphaticEndothelialCellsToVegfc_03hr30minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_forward 0 545 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%2011%29.CNhs13168.12392-131F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12392-131F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF617ZLL K562 ELF1 narrowPeak Transcription Factor ChIP-seq Peaks of ELF1 in K562 from ENCODE 3 (ENCFF617ZLL) 0 546 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ELF1 in K562 from ENCODE 3 (ENCFF617ZLL)\ parent encTfChipPk off\ shortLabel K562 ELF1\ subGroups cellType=K562 factor=ELF1\ track encTfChipPkENCFF617ZLL\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_tpm_rev LymphaticEndothelialCellsToVegfc_03hr30minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_reverse 1 546 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%2011%29.CNhs13168.12392-131F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12392-131F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_ctss_rev LymphaticEndothelialCellsToVegfc_03hr30minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_reverse 0 546 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%2011%29.CNhs13168.12392-131F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12392-131F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF539SXG K562 ELF4 narrowPeak Transcription Factor ChIP-seq Peaks of ELF4 in K562 from ENCODE 3 (ENCFF539SXG) 0 547 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ELF4 in K562 from ENCODE 3 (ENCFF539SXG)\ parent encTfChipPk off\ shortLabel K562 ELF4\ subGroups cellType=K562 factor=ELF4\ track encTfChipPkENCFF539SXG\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_tpm_fwd LymphaticEndothelialCellsToVegfc_03hr30minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_forward 1 547 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%2011%29.CNhs13286.12514-133B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12514-133B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_ctss_fwd LymphaticEndothelialCellsToVegfc_03hr30minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_forward 0 547 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%2011%29.CNhs13286.12514-133B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12514-133B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF119SCQ K562 ELK1 narrowPeak Transcription Factor ChIP-seq Peaks of ELK1 in K562 from ENCODE 3 (ENCFF119SCQ) 0 548 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ELK1 in K562 from ENCODE 3 (ENCFF119SCQ)\ parent encTfChipPk off\ shortLabel K562 ELK1\ subGroups cellType=K562 factor=ELK1\ track encTfChipPkENCFF119SCQ\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_tpm_rev LymphaticEndothelialCellsToVegfc_03hr30minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_reverse 1 548 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%2011%29.CNhs13286.12514-133B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12514-133B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_ctss_rev LymphaticEndothelialCellsToVegfc_03hr30minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_reverse 0 548 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%2011%29.CNhs13286.12514-133B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12514-133B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF755HCK K562 EP300 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in K562 from ENCODE 3 (ENCFF755HCK) 0 549 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of EP300 in K562 from ENCODE 3 (ENCFF755HCK)\ parent encTfChipPk off\ shortLabel K562 EP300\ subGroups cellType=K562 factor=EP300\ track encTfChipPkENCFF755HCK\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_tpm_fwd LymphaticEndothelialCellsToVegfc_04hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_forward 1 549 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep1%20%28MM%20XIX%20-%2012%29.CNhs13110.12271-130B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12271-130B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_ctss_fwd LymphaticEndothelialCellsToVegfc_04hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_forward 0 549 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep1%20%28MM%20XIX%20-%2012%29.CNhs13110.12271-130B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12271-130B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF225BXA K562 EP400 narrowPeak Transcription Factor ChIP-seq Peaks of EP400 in K562 from ENCODE 3 (ENCFF225BXA) 0 550 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of EP400 in K562 from ENCODE 3 (ENCFF225BXA)\ parent encTfChipPk off\ shortLabel K562 EP400\ subGroups cellType=K562 factor=EP400\ track encTfChipPkENCFF225BXA\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_tpm_rev LymphaticEndothelialCellsToVegfc_04hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_reverse 1 550 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep1%20%28MM%20XIX%20-%2012%29.CNhs13110.12271-130B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12271-130B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_ctss_rev LymphaticEndothelialCellsToVegfc_04hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_reverse 0 550 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep1%20%28MM%20XIX%20-%2012%29.CNhs13110.12271-130B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12271-130B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF592GWM K562 ESRRA narrowPeak Transcription Factor ChIP-seq Peaks of ESRRA in K562 from ENCODE 3 (ENCFF592GWM) 0 551 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ESRRA in K562 from ENCODE 3 (ENCFF592GWM)\ parent encTfChipPk off\ shortLabel K562 ESRRA\ subGroups cellType=K562 factor=ESRRA\ track encTfChipPkENCFF592GWM\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_tpm_fwd LymphaticEndothelialCellsToVegfc_04hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_forward 1 551 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep2%20%28MM%20XIV%20-%2012%29.CNhs13169.12393-131F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12393-131F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_ctss_fwd LymphaticEndothelialCellsToVegfc_04hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_forward 0 551 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep2%20%28MM%20XIV%20-%2012%29.CNhs13169.12393-131F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12393-131F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF461PRP K562 ETS1 narrowPeak Transcription Factor ChIP-seq Peaks of ETS1 in K562 from ENCODE 3 (ENCFF461PRP) 0 552 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ETS1 in K562 from ENCODE 3 (ENCFF461PRP)\ parent encTfChipPk off\ shortLabel K562 ETS1\ subGroups cellType=K562 factor=ETS1\ track encTfChipPkENCFF461PRP\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_tpm_rev LymphaticEndothelialCellsToVegfc_04hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_reverse 1 552 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep2%20%28MM%20XIV%20-%2012%29.CNhs13169.12393-131F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12393-131F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_ctss_rev LymphaticEndothelialCellsToVegfc_04hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_reverse 0 552 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep2%20%28MM%20XIV%20-%2012%29.CNhs13169.12393-131F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12393-131F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF426GSY K562 ETV6 1 narrowPeak Transcription Factor ChIP-seq Peaks of ETV6 in K562 from ENCODE 3 (ENCFF426GSY) 0 553 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ETV6 in K562 from ENCODE 3 (ENCFF426GSY)\ parent encTfChipPk off\ shortLabel K562 ETV6 1\ subGroups cellType=K562 factor=ETV6\ track encTfChipPkENCFF426GSY\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_tpm_fwd LymphaticEndothelialCellsToVegfc_04hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_forward 1 553 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep3%20%28MM%20XXII%20-%2012%29.CNhs13287.12515-133B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12515-133B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_ctss_fwd LymphaticEndothelialCellsToVegfc_04hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_forward 0 553 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep3%20%28MM%20XXII%20-%2012%29.CNhs13287.12515-133B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12515-133B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF658SGJ K562 ETV6 2 narrowPeak Transcription Factor ChIP-seq Peaks of ETV6 in K562 from ENCODE 3 (ENCFF658SGJ) 0 554 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ETV6 in K562 from ENCODE 3 (ENCFF658SGJ)\ parent encTfChipPk off\ shortLabel K562 ETV6 2\ subGroups cellType=K562 factor=ETV6\ track encTfChipPkENCFF658SGJ\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_tpm_rev LymphaticEndothelialCellsToVegfc_04hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_reverse 1 554 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep3%20%28MM%20XXII%20-%2012%29.CNhs13287.12515-133B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12515-133B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_ctss_rev LymphaticEndothelialCellsToVegfc_04hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_reverse 0 554 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep3%20%28MM%20XXII%20-%2012%29.CNhs13287.12515-133B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12515-133B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF560CYG K562 EWSR1 narrowPeak Transcription Factor ChIP-seq Peaks of EWSR1 in K562 from ENCODE 3 (ENCFF560CYG) 0 555 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of EWSR1 in K562 from ENCODE 3 (ENCFF560CYG)\ parent encTfChipPk off\ shortLabel K562 EWSR1\ subGroups cellType=K562 factor=EWSR1\ track encTfChipPkENCFF560CYG\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_tpm_fwd LymphaticEndothelialCellsToVegfc_05hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_forward 1 555 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep1%20%28MM%20XIX%20-%2013%29.CNhs13111.12272-130B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12272-130B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_ctss_fwd LymphaticEndothelialCellsToVegfc_05hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_forward 0 555 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep1%20%28MM%20XIX%20-%2013%29.CNhs13111.12272-130B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12272-130B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF084DTV K562 FIP1L1 narrowPeak Transcription Factor ChIP-seq Peaks of FIP1L1 in K562 from ENCODE 3 (ENCFF084DTV) 0 556 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of FIP1L1 in K562 from ENCODE 3 (ENCFF084DTV)\ parent encTfChipPk off\ shortLabel K562 FIP1L1\ subGroups cellType=K562 factor=FIP1L1\ track encTfChipPkENCFF084DTV\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_tpm_rev LymphaticEndothelialCellsToVegfc_05hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_reverse 1 556 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep1%20%28MM%20XIX%20-%2013%29.CNhs13111.12272-130B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12272-130B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_ctss_rev LymphaticEndothelialCellsToVegfc_05hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_reverse 0 556 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep1%20%28MM%20XIX%20-%2013%29.CNhs13111.12272-130B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12272-130B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF087MFG K562 FOSL1 narrowPeak Transcription Factor ChIP-seq Peaks of FOSL1 in K562 from ENCODE 3 (ENCFF087MFG) 0 557 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of FOSL1 in K562 from ENCODE 3 (ENCFF087MFG)\ parent encTfChipPk off\ shortLabel K562 FOSL1\ subGroups cellType=K562 factor=FOSL1\ track encTfChipPkENCFF087MFG\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_tpm_fwd LymphaticEndothelialCellsToVegfc_05hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_forward 1 557 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep2%20%28MM%20XIV%20-%2013%29.CNhs13170.12394-131F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12394-131F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_ctss_fwd LymphaticEndothelialCellsToVegfc_05hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_forward 0 557 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep2%20%28MM%20XIV%20-%2013%29.CNhs13170.12394-131F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12394-131F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF765NAN K562 FOXA1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in K562 from ENCODE 3 (ENCFF765NAN) 0 558 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in K562 from ENCODE 3 (ENCFF765NAN)\ parent encTfChipPk off\ shortLabel K562 FOXA1\ subGroups cellType=K562 factor=FOXA1\ track encTfChipPkENCFF765NAN\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_tpm_rev LymphaticEndothelialCellsToVegfc_05hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_reverse 1 558 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep2%20%28MM%20XIV%20-%2013%29.CNhs13170.12394-131F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12394-131F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_ctss_rev LymphaticEndothelialCellsToVegfc_05hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_reverse 0 558 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep2%20%28MM%20XIV%20-%2013%29.CNhs13170.12394-131F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12394-131F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF066CWG K562 FOXK2 1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXK2 in K562 from ENCODE 3 (ENCFF066CWG) 0 559 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of FOXK2 in K562 from ENCODE 3 (ENCFF066CWG)\ parent encTfChipPk off\ shortLabel K562 FOXK2 1\ subGroups cellType=K562 factor=FOXK2\ track encTfChipPkENCFF066CWG\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_tpm_fwd LymphaticEndothelialCellsToVegfc_05hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_forward 1 559 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep3%20%28MM%20XXII%20-%2013%29.CNhs13288.12516-133B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12516-133B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_ctss_fwd LymphaticEndothelialCellsToVegfc_05hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_forward 0 559 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep3%20%28MM%20XXII%20-%2013%29.CNhs13288.12516-133B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12516-133B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF490EQR K562 FOXK2 2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXK2 in K562 from ENCODE 3 (ENCFF490EQR) 0 560 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of FOXK2 in K562 from ENCODE 3 (ENCFF490EQR)\ parent encTfChipPk off\ shortLabel K562 FOXK2 2\ subGroups cellType=K562 factor=FOXK2\ track encTfChipPkENCFF490EQR\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_tpm_rev LymphaticEndothelialCellsToVegfc_05hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_reverse 1 560 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep3%20%28MM%20XXII%20-%2013%29.CNhs13288.12516-133B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12516-133B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_ctss_rev LymphaticEndothelialCellsToVegfc_05hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_reverse 0 560 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep3%20%28MM%20XXII%20-%2013%29.CNhs13288.12516-133B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12516-133B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF778PWE K562 FOXM1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXM1 in K562 from ENCODE 3 (ENCFF778PWE) 0 561 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of FOXM1 in K562 from ENCODE 3 (ENCFF778PWE)\ parent encTfChipPk off\ shortLabel K562 FOXM1\ subGroups cellType=K562 factor=FOXM1\ track encTfChipPkENCFF778PWE\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_tpm_fwd LymphaticEndothelialCellsToVegfc_06hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_forward 1 561 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep1%20%28MM%20XIX%20-%2014%29.CNhs13112.12273-130B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12273-130B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_ctss_fwd LymphaticEndothelialCellsToVegfc_06hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_forward 0 561 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep1%20%28MM%20XIX%20-%2014%29.CNhs13112.12273-130B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12273-130B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF688ARM K562 FUS narrowPeak Transcription Factor ChIP-seq Peaks of FUS in K562 from ENCODE 3 (ENCFF688ARM) 0 562 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of FUS in K562 from ENCODE 3 (ENCFF688ARM)\ parent encTfChipPk off\ shortLabel K562 FUS\ subGroups cellType=K562 factor=FUS\ track encTfChipPkENCFF688ARM\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_tpm_rev LymphaticEndothelialCellsToVegfc_06hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_reverse 1 562 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep1%20%28MM%20XIX%20-%2014%29.CNhs13112.12273-130B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12273-130B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_ctss_rev LymphaticEndothelialCellsToVegfc_06hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_reverse 0 562 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep1%20%28MM%20XIX%20-%2014%29.CNhs13112.12273-130B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12273-130B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF124HAC K562 GABPA narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in K562 from ENCODE 3 (ENCFF124HAC) 0 563 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of GABPA in K562 from ENCODE 3 (ENCFF124HAC)\ parent encTfChipPk off\ shortLabel K562 GABPA\ subGroups cellType=K562 factor=GABPA\ track encTfChipPkENCFF124HAC\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_tpm_fwd LymphaticEndothelialCellsToVegfc_06hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_forward 1 563 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep2%20%28MM%20XIV%20-%2014%29.CNhs13171.12395-131G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12395-131G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_ctss_fwd LymphaticEndothelialCellsToVegfc_06hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_forward 0 563 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep2%20%28MM%20XIV%20-%2014%29.CNhs13171.12395-131G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12395-131G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF700DXR K562 GABPB1 narrowPeak Transcription Factor ChIP-seq Peaks of GABPB1 in K562 from ENCODE 3 (ENCFF700DXR) 0 564 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of GABPB1 in K562 from ENCODE 3 (ENCFF700DXR)\ parent encTfChipPk off\ shortLabel K562 GABPB1\ subGroups cellType=K562 factor=GABPB1\ track encTfChipPkENCFF700DXR\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_tpm_rev LymphaticEndothelialCellsToVegfc_06hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_reverse 1 564 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep2%20%28MM%20XIV%20-%2014%29.CNhs13171.12395-131G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12395-131G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_ctss_rev LymphaticEndothelialCellsToVegfc_06hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_reverse 0 564 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep2%20%28MM%20XIV%20-%2014%29.CNhs13171.12395-131G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12395-131G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF148JKK K562 GATA1 narrowPeak Transcription Factor ChIP-seq Peaks of GATA1 in K562 from ENCODE 3 (ENCFF148JKK) 0 565 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of GATA1 in K562 from ENCODE 3 (ENCFF148JKK)\ parent encTfChipPk off\ shortLabel K562 GATA1\ subGroups cellType=K562 factor=GATA1\ track encTfChipPkENCFF148JKK\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_tpm_fwd LymphaticEndothelialCellsToVegfc_06hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_forward 1 565 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep3%20%28MM%20XXII%20-%2014%29.CNhs13289.12517-133B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12517-133B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_ctss_fwd LymphaticEndothelialCellsToVegfc_06hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_forward 0 565 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep3%20%28MM%20XXII%20-%2014%29.CNhs13289.12517-133B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12517-133B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF173TXA K562 GATA2 narrowPeak Transcription Factor ChIP-seq Peaks of GATA2 in K562 from ENCODE 3 (ENCFF173TXA) 0 566 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of GATA2 in K562 from ENCODE 3 (ENCFF173TXA)\ parent encTfChipPk on\ shortLabel K562 GATA2\ subGroups cellType=K562 factor=GATA2\ track encTfChipPkENCFF173TXA\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_tpm_rev LymphaticEndothelialCellsToVegfc_06hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_reverse 1 566 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep3%20%28MM%20XXII%20-%2014%29.CNhs13289.12517-133B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12517-133B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_ctss_rev LymphaticEndothelialCellsToVegfc_06hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_reverse 0 566 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep3%20%28MM%20XXII%20-%2014%29.CNhs13289.12517-133B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12517-133B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF950ZWP K562 GATAD2A narrowPeak Transcription Factor ChIP-seq Peaks of GATAD2A in K562 from ENCODE 3 (ENCFF950ZWP) 0 567 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of GATAD2A in K562 from ENCODE 3 (ENCFF950ZWP)\ parent encTfChipPk off\ shortLabel K562 GATAD2A\ subGroups cellType=K562 factor=GATAD2A\ track encTfChipPkENCFF950ZWP\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_tpm_fwd LymphaticEndothelialCellsToVegfc_07hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_forward 1 567 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep1%20%28MM%20XIX%20-%2015%29.CNhs13113.12274-130B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12274-130B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_ctss_fwd LymphaticEndothelialCellsToVegfc_07hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_forward 0 567 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep1%20%28MM%20XIX%20-%2015%29.CNhs13113.12274-130B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12274-130B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF569CMJ K562 GATAD2B narrowPeak Transcription Factor ChIP-seq Peaks of GATAD2B in K562 from ENCODE 3 (ENCFF569CMJ) 0 568 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of GATAD2B in K562 from ENCODE 3 (ENCFF569CMJ)\ parent encTfChipPk off\ shortLabel K562 GATAD2B\ subGroups cellType=K562 factor=GATAD2B\ track encTfChipPkENCFF569CMJ\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_tpm_rev LymphaticEndothelialCellsToVegfc_07hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_reverse 1 568 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep1%20%28MM%20XIX%20-%2015%29.CNhs13113.12274-130B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12274-130B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_ctss_rev LymphaticEndothelialCellsToVegfc_07hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_reverse 0 568 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep1%20%28MM%20XIX%20-%2015%29.CNhs13113.12274-130B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12274-130B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF678VPQ K562 GMEB1 narrowPeak Transcription Factor ChIP-seq Peaks of GMEB1 in K562 from ENCODE 3 (ENCFF678VPQ) 0 569 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of GMEB1 in K562 from ENCODE 3 (ENCFF678VPQ)\ parent encTfChipPk off\ shortLabel K562 GMEB1\ subGroups cellType=K562 factor=GMEB1\ track encTfChipPkENCFF678VPQ\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_tpm_fwd LymphaticEndothelialCellsToVegfc_07hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_forward 1 569 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep2%20%28MM%20XIV%20-%2015%29.CNhs13172.12396-131G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12396-131G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_ctss_fwd LymphaticEndothelialCellsToVegfc_07hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_forward 0 569 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep2%20%28MM%20XIV%20-%2015%29.CNhs13172.12396-131G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12396-131G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF167RXK K562 HCFC1 narrowPeak Transcription Factor ChIP-seq Peaks of HCFC1 in K562 from ENCODE 3 (ENCFF167RXK) 0 570 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HCFC1 in K562 from ENCODE 3 (ENCFF167RXK)\ parent encTfChipPk off\ shortLabel K562 HCFC1\ subGroups cellType=K562 factor=HCFC1\ track encTfChipPkENCFF167RXK\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_tpm_rev LymphaticEndothelialCellsToVegfc_07hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_reverse 1 570 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep2%20%28MM%20XIV%20-%2015%29.CNhs13172.12396-131G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12396-131G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_ctss_rev LymphaticEndothelialCellsToVegfc_07hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_reverse 0 570 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep2%20%28MM%20XIV%20-%2015%29.CNhs13172.12396-131G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12396-131G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF758PGF K562 HDAC1 1 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF758PGF) 0 571 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF758PGF)\ parent encTfChipPk off\ shortLabel K562 HDAC1 1\ subGroups cellType=K562 factor=HDAC1\ track encTfChipPkENCFF758PGF\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_tpm_fwd LymphaticEndothelialCellsToVegfc_07hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_forward 1 571 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep3%20%28MM%20XXII%20-%2015%29.CNhs13290.12518-133B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12518-133B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_ctss_fwd LymphaticEndothelialCellsToVegfc_07hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_forward 0 571 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep3%20%28MM%20XXII%20-%2015%29.CNhs13290.12518-133B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12518-133B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF661VOO K562 HDAC1 2 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF661VOO) 0 572 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF661VOO)\ parent encTfChipPk off\ shortLabel K562 HDAC1 2\ subGroups cellType=K562 factor=HDAC1\ track encTfChipPkENCFF661VOO\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_tpm_rev LymphaticEndothelialCellsToVegfc_07hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_reverse 1 572 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep3%20%28MM%20XXII%20-%2015%29.CNhs13290.12518-133B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12518-133B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_ctss_rev LymphaticEndothelialCellsToVegfc_07hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_reverse 0 572 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep3%20%28MM%20XXII%20-%2015%29.CNhs13290.12518-133B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12518-133B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF188TBM K562 HDAC1 3 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF188TBM) 0 573 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF188TBM)\ parent encTfChipPk off\ shortLabel K562 HDAC1 3\ subGroups cellType=K562 factor=HDAC1\ track encTfChipPkENCFF188TBM\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_tpm_fwd LymphaticEndothelialCellsToVegfc_08hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_forward 1 573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep1%20%28MM%20XIX%20-%2016%29.CNhs11937.12275-130B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12275-130B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_ctss_fwd LymphaticEndothelialCellsToVegfc_08hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_forward 0 573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep1%20%28MM%20XIX%20-%2016%29.CNhs11937.12275-130B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12275-130B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF557WXK K562 HDAC1 4 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF557WXK) 0 574 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF557WXK)\ parent encTfChipPk off\ shortLabel K562 HDAC1 4\ subGroups cellType=K562 factor=HDAC1\ track encTfChipPkENCFF557WXK\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_tpm_rev LymphaticEndothelialCellsToVegfc_08hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_reverse 1 574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep1%20%28MM%20XIX%20-%2016%29.CNhs11937.12275-130B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12275-130B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_ctss_rev LymphaticEndothelialCellsToVegfc_08hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_reverse 0 574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep1%20%28MM%20XIX%20-%2016%29.CNhs11937.12275-130B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12275-130B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF363GSV K562 HDAC2 1 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in K562 from ENCODE 3 (ENCFF363GSV) 0 575 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in K562 from ENCODE 3 (ENCFF363GSV)\ parent encTfChipPk off\ shortLabel K562 HDAC2 1\ subGroups cellType=K562 factor=HDAC2\ track encTfChipPkENCFF363GSV\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_tpm_fwd LymphaticEndothelialCellsToVegfc_08hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_forward 1 575 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep2%20%28MM%20XIV%20-%2016%29.CNhs13173.12397-131G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12397-131G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_ctss_fwd LymphaticEndothelialCellsToVegfc_08hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_forward 0 575 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep2%20%28MM%20XIV%20-%2016%29.CNhs13173.12397-131G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12397-131G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF519RWJ K562 HDAC2 2 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in K562 from ENCODE 3 (ENCFF519RWJ) 0 576 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in K562 from ENCODE 3 (ENCFF519RWJ)\ parent encTfChipPk off\ shortLabel K562 HDAC2 2\ subGroups cellType=K562 factor=HDAC2\ track encTfChipPkENCFF519RWJ\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_tpm_rev LymphaticEndothelialCellsToVegfc_08hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_reverse 1 576 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep2%20%28MM%20XIV%20-%2016%29.CNhs13173.12397-131G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12397-131G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_ctss_rev LymphaticEndothelialCellsToVegfc_08hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_reverse 0 576 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep2%20%28MM%20XIV%20-%2016%29.CNhs13173.12397-131G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12397-131G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF618YRQ K562 HDAC2 3 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in K562 from ENCODE 3 (ENCFF618YRQ) 0 577 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in K562 from ENCODE 3 (ENCFF618YRQ)\ parent encTfChipPk off\ shortLabel K562 HDAC2 3\ subGroups cellType=K562 factor=HDAC2\ track encTfChipPkENCFF618YRQ\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_tpm_fwd LymphaticEndothelialCellsToVegfc_08hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_forward 1 577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep3%20%28MM%20XXII%20-%2016%29.CNhs13291.12519-133B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12519-133B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_ctss_fwd LymphaticEndothelialCellsToVegfc_08hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_forward 0 577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep3%20%28MM%20XXII%20-%2016%29.CNhs13291.12519-133B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12519-133B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF742LSD K562 HDAC3 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC3 in K562 from ENCODE 3 (ENCFF742LSD) 0 578 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HDAC3 in K562 from ENCODE 3 (ENCFF742LSD)\ parent encTfChipPk off\ shortLabel K562 HDAC3\ subGroups cellType=K562 factor=HDAC3\ track encTfChipPkENCFF742LSD\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_tpm_rev LymphaticEndothelialCellsToVegfc_08hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_reverse 1 578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep3%20%28MM%20XXII%20-%2016%29.CNhs13291.12519-133B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12519-133B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_ctss_rev LymphaticEndothelialCellsToVegfc_08hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_reverse 0 578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep3%20%28MM%20XXII%20-%2016%29.CNhs13291.12519-133B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12519-133B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF295GBP K562 HDAC6 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC6 in K562 from ENCODE 3 (ENCFF295GBP) 0 579 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HDAC6 in K562 from ENCODE 3 (ENCFF295GBP)\ parent encTfChipPk off\ shortLabel K562 HDAC6\ subGroups cellType=K562 factor=HDAC6\ track encTfChipPkENCFF295GBP\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_tpm_fwd Mcf7ToEgf1_08hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_forward 1 579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep1.CNhs12565.13046-139G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13046-139G4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_08hrBr1+\ subGroups sequenceTech=LQhCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_ctss_fwd Mcf7ToEgf1_08hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_forward 0 579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep1.CNhs12565.13046-139G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13046-139G4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_08hrBr1+\ subGroups sequenceTech=LQhCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF010OOE K562 HES1 narrowPeak Transcription Factor ChIP-seq Peaks of HES1 in K562 from ENCODE 3 (ENCFF010OOE) 0 580 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HES1 in K562 from ENCODE 3 (ENCFF010OOE)\ parent encTfChipPk off\ shortLabel K562 HES1\ subGroups cellType=K562 factor=HES1\ track encTfChipPkENCFF010OOE\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_tpm_rev Mcf7ToEgf1_08hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_reverse 1 580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep1.CNhs12565.13046-139G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13046-139G4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_08hrBr1-\ subGroups sequenceTech=LQhCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_ctss_rev Mcf7ToEgf1_08hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_reverse 0 580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep1.CNhs12565.13046-139G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13046-139G4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_08hrBr1-\ subGroups sequenceTech=LQhCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF718DFX K562 HMBOX1 narrowPeak Transcription Factor ChIP-seq Peaks of HMBOX1 in K562 from ENCODE 3 (ENCFF718DFX) 0 581 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HMBOX1 in K562 from ENCODE 3 (ENCFF718DFX)\ parent encTfChipPk off\ shortLabel K562 HMBOX1\ subGroups cellType=K562 factor=HMBOX1\ track encTfChipPkENCFF718DFX\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_tpm_fwd Mcf7ToEgf1_00hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_forward 1 581 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep2.CNhs12475.13097-140D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13097-140D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_ctss_fwd Mcf7ToEgf1_00hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_forward 0 581 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep2.CNhs12475.13097-140D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13097-140D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF844QFF K562 HNRNPH1 narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPH1 in K562 from ENCODE 3 (ENCFF844QFF) 0 582 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPH1 in K562 from ENCODE 3 (ENCFF844QFF)\ parent encTfChipPk off\ shortLabel K562 HNRNPH1\ subGroups cellType=K562 factor=HNRNPH1\ track encTfChipPkENCFF844QFF\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_tpm_rev Mcf7ToEgf1_00hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_reverse 1 582 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep2.CNhs12475.13097-140D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13097-140D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_ctss_rev Mcf7ToEgf1_00hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_reverse 0 582 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep2.CNhs12475.13097-140D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13097-140D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF984QUV K562 HNRNPK narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPK in K562 from ENCODE 3 (ENCFF984QUV) 0 583 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPK in K562 from ENCODE 3 (ENCFF984QUV)\ parent encTfChipPk off\ shortLabel K562 HNRNPK\ subGroups cellType=K562 factor=HNRNPK\ track encTfChipPkENCFF984QUV\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_tpm_fwd Mcf7ToEgf1_00hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_forward 1 583 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep3.CNhs12703.13163-141B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13163-141B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_ctss_fwd Mcf7ToEgf1_00hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_forward 0 583 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep3.CNhs12703.13163-141B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13163-141B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF984ESZ K562 HNRNPL narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPL in K562 from ENCODE 3 (ENCFF984ESZ) 0 584 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPL in K562 from ENCODE 3 (ENCFF984ESZ)\ parent encTfChipPk off\ shortLabel K562 HNRNPL\ subGroups cellType=K562 factor=HNRNPL\ track encTfChipPkENCFF984ESZ\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_tpm_rev Mcf7ToEgf1_00hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_reverse 1 584 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep3.CNhs12703.13163-141B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13163-141B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_ctss_rev Mcf7ToEgf1_00hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_reverse 0 584 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep3.CNhs12703.13163-141B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13163-141B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF662WPN K562 HNRNPLL narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPLL in K562 from ENCODE 3 (ENCFF662WPN) 0 585 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPLL in K562 from ENCODE 3 (ENCFF662WPN)\ parent encTfChipPk off\ shortLabel K562 HNRNPLL\ subGroups cellType=K562 factor=HNRNPLL\ track encTfChipPkENCFF662WPN\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_tpm_fwd Mcf7ToEgf1_00hr15minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_forward 1 585 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep1.CNhs12420.13032-139E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13032-139E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_ctss_fwd Mcf7ToEgf1_00hr15minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_forward 0 585 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep1.CNhs12420.13032-139E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13032-139E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF991ZSC K562 HNRNPUL1 narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPUL1 in K562 from ENCODE 3 (ENCFF991ZSC) 0 586 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPUL1 in K562 from ENCODE 3 (ENCFF991ZSC)\ parent encTfChipPk off\ shortLabel K562 HNRNPUL1\ subGroups cellType=K562 factor=HNRNPUL1\ track encTfChipPkENCFF991ZSC\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_tpm_rev Mcf7ToEgf1_00hr15minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_reverse 1 586 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep1.CNhs12420.13032-139E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13032-139E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_ctss_rev Mcf7ToEgf1_00hr15minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_reverse 0 586 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep1.CNhs12420.13032-139E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13032-139E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF785BTP K562 IKZF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF1 in K562 from ENCODE 3 (ENCFF785BTP) 0 587 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of IKZF1 in K562 from ENCODE 3 (ENCFF785BTP)\ parent encTfChipPk off\ shortLabel K562 IKZF1 1\ subGroups cellType=K562 factor=IKZF1\ track encTfChipPkENCFF785BTP\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_tpm_fwd Mcf7ToEgf1_00hr15minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_forward 1 587 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep2.CNhs12476.13098-140D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13098-140D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_ctss_fwd Mcf7ToEgf1_00hr15minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_forward 0 587 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep2.CNhs12476.13098-140D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13098-140D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF994OQH K562 IKZF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF1 in K562 from ENCODE 3 (ENCFF994OQH) 0 588 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of IKZF1 in K562 from ENCODE 3 (ENCFF994OQH)\ parent encTfChipPk off\ shortLabel K562 IKZF1 2\ subGroups cellType=K562 factor=IKZF1\ track encTfChipPkENCFF994OQH\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_tpm_rev Mcf7ToEgf1_00hr15minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_reverse 1 588 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep2.CNhs12476.13098-140D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13098-140D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_ctss_rev Mcf7ToEgf1_00hr15minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_reverse 0 588 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep2.CNhs12476.13098-140D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13098-140D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF978BBL K562 IRF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF978BBL) 0 589 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF978BBL)\ parent encTfChipPk off\ shortLabel K562 IRF1 1\ subGroups cellType=K562 factor=IRF1\ track encTfChipPkENCFF978BBL\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_tpm_fwd Mcf7ToEgf1_00hr15minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_forward 1 589 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep3.CNhs12704.13164-141B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13164-141B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_ctss_fwd Mcf7ToEgf1_00hr15minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_forward 0 589 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep3.CNhs12704.13164-141B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13164-141B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF688XON K562 IRF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF688XON) 0 590 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF688XON)\ parent encTfChipPk off\ shortLabel K562 IRF1 2\ subGroups cellType=K562 factor=IRF1\ track encTfChipPkENCFF688XON\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_tpm_rev Mcf7ToEgf1_00hr15minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_reverse 1 590 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep3.CNhs12704.13164-141B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13164-141B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_ctss_rev Mcf7ToEgf1_00hr15minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_reverse 0 590 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep3.CNhs12704.13164-141B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13164-141B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF938NBD K562 IRF1 3 narrowPeak Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF938NBD) 0 591 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF938NBD)\ parent encTfChipPk off\ shortLabel K562 IRF1 3\ subGroups cellType=K562 factor=IRF1\ track encTfChipPkENCFF938NBD\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_tpm_fwd Mcf7ToEgf1_00hr30minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_forward 1 591 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep1.CNhs12421.13033-139E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13033-139E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_ctss_fwd Mcf7ToEgf1_00hr30minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_forward 0 591 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep1.CNhs12421.13033-139E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13033-139E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF346LMY K562 IRF1 4 narrowPeak Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF346LMY) 0 592 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF346LMY)\ parent encTfChipPk off\ shortLabel K562 IRF1 4\ subGroups cellType=K562 factor=IRF1\ track encTfChipPkENCFF346LMY\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_tpm_rev Mcf7ToEgf1_00hr30minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_reverse 1 592 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep1.CNhs12421.13033-139E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13033-139E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_ctss_rev Mcf7ToEgf1_00hr30minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_reverse 0 592 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep1.CNhs12421.13033-139E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13033-139E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF886EVL K562 IRF2 narrowPeak Transcription Factor ChIP-seq Peaks of IRF2 in K562 from ENCODE 3 (ENCFF886EVL) 0 593 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of IRF2 in K562 from ENCODE 3 (ENCFF886EVL)\ parent encTfChipPk off\ shortLabel K562 IRF2\ subGroups cellType=K562 factor=IRF2\ track encTfChipPkENCFF886EVL\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_tpm_fwd Mcf7ToEgf1_00hr30minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_forward 1 593 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep2.CNhs12477.13099-140D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13099-140D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_ctss_fwd Mcf7ToEgf1_00hr30minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_forward 0 593 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep2.CNhs12477.13099-140D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13099-140D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF881AVX K562 JUN 1 narrowPeak Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF881AVX) 0 594 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF881AVX)\ parent encTfChipPk off\ shortLabel K562 JUN 1\ subGroups cellType=K562 factor=JUN\ track encTfChipPkENCFF881AVX\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_tpm_rev Mcf7ToEgf1_00hr30minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_reverse 1 594 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep2.CNhs12477.13099-140D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13099-140D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_ctss_rev Mcf7ToEgf1_00hr30minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_reverse 0 594 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep2.CNhs12477.13099-140D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13099-140D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF672LKE K562 JUN 2 narrowPeak Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF672LKE) 0 595 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF672LKE)\ parent encTfChipPk off\ shortLabel K562 JUN 2\ subGroups cellType=K562 factor=JUN\ track encTfChipPkENCFF672LKE\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_tpm_fwd Mcf7ToEgf1_00hr30minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_forward 1 595 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep3.CNhs12738.13165-141B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13165-141B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_ctss_fwd Mcf7ToEgf1_00hr30minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_forward 0 595 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep3.CNhs12738.13165-141B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13165-141B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF167WUZ K562 JUN 3 narrowPeak Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF167WUZ) 0 596 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF167WUZ)\ parent encTfChipPk off\ shortLabel K562 JUN 3\ subGroups cellType=K562 factor=JUN\ track encTfChipPkENCFF167WUZ\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_tpm_rev Mcf7ToEgf1_00hr30minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_reverse 1 596 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep3.CNhs12738.13165-141B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13165-141B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_ctss_rev Mcf7ToEgf1_00hr30minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_reverse 0 596 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep3.CNhs12738.13165-141B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13165-141B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF394CEC K562 JUN 4 narrowPeak Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF394CEC) 0 597 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF394CEC)\ parent encTfChipPk off\ shortLabel K562 JUN 4\ subGroups cellType=K562 factor=JUN\ track encTfChipPkENCFF394CEC\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_tpm_fwd Mcf7ToEgf1_00hr45minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_forward 1 597 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep1.CNhs12422.13034-139F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13034-139F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_ctss_fwd Mcf7ToEgf1_00hr45minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_forward 0 597 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep1.CNhs12422.13034-139F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13034-139F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF032UMW K562 JUN 5 narrowPeak Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF032UMW) 0 598 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF032UMW)\ parent encTfChipPk off\ shortLabel K562 JUN 5\ subGroups cellType=K562 factor=JUN\ track encTfChipPkENCFF032UMW\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_tpm_rev Mcf7ToEgf1_00hr45minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_reverse 1 598 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep1.CNhs12422.13034-139F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13034-139F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_ctss_rev Mcf7ToEgf1_00hr45minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_reverse 0 598 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep1.CNhs12422.13034-139F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13034-139F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF739XTO K562 JUNB narrowPeak Transcription Factor ChIP-seq Peaks of JUNB in K562 from ENCODE 3 (ENCFF739XTO) 0 599 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of JUNB in K562 from ENCODE 3 (ENCFF739XTO)\ parent encTfChipPk off\ shortLabel K562 JUNB\ subGroups cellType=K562 factor=JUNB\ track encTfChipPkENCFF739XTO\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_tpm_fwd Mcf7ToEgf1_00hr45minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_forward 1 599 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep2.CNhs12478.13100-140D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13100-140D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_ctss_fwd Mcf7ToEgf1_00hr45minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_forward 0 599 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep2.CNhs12478.13100-140D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13100-140D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF213EYD K562 JUND narrowPeak Transcription Factor ChIP-seq Peaks of JUND in K562 from ENCODE 3 (ENCFF213EYD) 0 600 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of JUND in K562 from ENCODE 3 (ENCFF213EYD)\ parent encTfChipPk off\ shortLabel K562 JUND\ subGroups cellType=K562 factor=JUND\ track encTfChipPkENCFF213EYD\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_tpm_rev Mcf7ToEgf1_00hr45minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_reverse 1 600 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep2.CNhs12478.13100-140D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13100-140D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_ctss_rev Mcf7ToEgf1_00hr45minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_reverse 0 600 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep2.CNhs12478.13100-140D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13100-140D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF556XQQ K562 KAT2B narrowPeak Transcription Factor ChIP-seq Peaks of KAT2B in K562 from ENCODE 3 (ENCFF556XQQ) 0 601 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of KAT2B in K562 from ENCODE 3 (ENCFF556XQQ)\ parent encTfChipPk off\ shortLabel K562 KAT2B\ subGroups cellType=K562 factor=KAT2B\ track encTfChipPkENCFF556XQQ\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_tpm_fwd Mcf7ToEgf1_00hr45minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_forward 1 601 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep3.CNhs12739.13166-141B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13166-141B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_ctss_fwd Mcf7ToEgf1_00hr45minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_forward 0 601 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep3.CNhs12739.13166-141B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13166-141B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF207ZEK K562 KAT8 narrowPeak Transcription Factor ChIP-seq Peaks of KAT8 in K562 from ENCODE 3 (ENCFF207ZEK) 0 602 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of KAT8 in K562 from ENCODE 3 (ENCFF207ZEK)\ parent encTfChipPk off\ shortLabel K562 KAT8\ subGroups cellType=K562 factor=KAT8\ track encTfChipPkENCFF207ZEK\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_tpm_rev Mcf7ToEgf1_00hr45minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_reverse 1 602 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep3.CNhs12739.13166-141B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13166-141B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_ctss_rev Mcf7ToEgf1_00hr45minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_reverse 0 602 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep3.CNhs12739.13166-141B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13166-141B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF796VMI K562 KDM1A 1 narrowPeak Transcription Factor ChIP-seq Peaks of KDM1A in K562 from ENCODE 3 (ENCFF796VMI) 0 603 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of KDM1A in K562 from ENCODE 3 (ENCFF796VMI)\ parent encTfChipPk off\ shortLabel K562 KDM1A 1\ subGroups cellType=K562 factor=KDM1A\ track encTfChipPkENCFF796VMI\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_tpm_fwd Mcf7ToEgf1_01hr00minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_forward 1 603 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep1.CNhs12423.13035-139F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13035-139F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_ctss_fwd Mcf7ToEgf1_01hr00minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_forward 0 603 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep1.CNhs12423.13035-139F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13035-139F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF483BRD K562 KDM1A 2 narrowPeak Transcription Factor ChIP-seq Peaks of KDM1A in K562 from ENCODE 3 (ENCFF483BRD) 0 604 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of KDM1A in K562 from ENCODE 3 (ENCFF483BRD)\ parent encTfChipPk off\ shortLabel K562 KDM1A 2\ subGroups cellType=K562 factor=KDM1A\ track encTfChipPkENCFF483BRD\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_tpm_rev Mcf7ToEgf1_01hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_reverse 1 604 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep1.CNhs12423.13035-139F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13035-139F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_ctss_rev Mcf7ToEgf1_01hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_reverse 0 604 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep1.CNhs12423.13035-139F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13035-139F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF470RHZ K562 KDM4B 1 narrowPeak Transcription Factor ChIP-seq Peaks of KDM4B in K562 from ENCODE 3 (ENCFF470RHZ) 0 605 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of KDM4B in K562 from ENCODE 3 (ENCFF470RHZ)\ parent encTfChipPk off\ shortLabel K562 KDM4B 1\ subGroups cellType=K562 factor=KDM4B\ track encTfChipPkENCFF470RHZ\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_tpm_fwd Mcf7ToEgf1_01hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_forward 1 605 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep2.CNhs12479.13101-140D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13101-140D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_ctss_fwd Mcf7ToEgf1_01hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_forward 0 605 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep2.CNhs12479.13101-140D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13101-140D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF955AOD K562 KDM4B 2 narrowPeak Transcription Factor ChIP-seq Peaks of KDM4B in K562 from ENCODE 3 (ENCFF955AOD) 0 606 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of KDM4B in K562 from ENCODE 3 (ENCFF955AOD)\ parent encTfChipPk off\ shortLabel K562 KDM4B 2\ subGroups cellType=K562 factor=KDM4B\ track encTfChipPkENCFF955AOD\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_tpm_rev Mcf7ToEgf1_01hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_reverse 1 606 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep2.CNhs12479.13101-140D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13101-140D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_ctss_rev Mcf7ToEgf1_01hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_reverse 0 606 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep2.CNhs12479.13101-140D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13101-140D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF668XLN K562 KDM5B narrowPeak Transcription Factor ChIP-seq Peaks of KDM5B in K562 from ENCODE 3 (ENCFF668XLN) 0 607 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of KDM5B in K562 from ENCODE 3 (ENCFF668XLN)\ parent encTfChipPk off\ shortLabel K562 KDM5B\ subGroups cellType=K562 factor=KDM5B\ track encTfChipPkENCFF668XLN\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_tpm_fwd Mcf7ToEgf1_01hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_forward 1 607 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep3.CNhs12705.13167-141B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13167-141B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_ctss_fwd Mcf7ToEgf1_01hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_forward 0 607 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep3.CNhs12705.13167-141B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13167-141B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF379LKE K562 KLF16 narrowPeak Transcription Factor ChIP-seq Peaks of KLF16 in K562 from ENCODE 3 (ENCFF379LKE) 0 608 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of KLF16 in K562 from ENCODE 3 (ENCFF379LKE)\ parent encTfChipPk off\ shortLabel K562 KLF16\ subGroups cellType=K562 factor=KLF16\ track encTfChipPkENCFF379LKE\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_tpm_rev Mcf7ToEgf1_01hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_reverse 1 608 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep3.CNhs12705.13167-141B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13167-141B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_ctss_rev Mcf7ToEgf1_01hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_reverse 0 608 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep3.CNhs12705.13167-141B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13167-141B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF423LPW K562 L3MBTL2 narrowPeak Transcription Factor ChIP-seq Peaks of L3MBTL2 in K562 from ENCODE 3 (ENCFF423LPW) 0 609 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of L3MBTL2 in K562 from ENCODE 3 (ENCFF423LPW)\ parent encTfChipPk off\ shortLabel K562 L3MBTL2\ subGroups cellType=K562 factor=L3MBTL2\ track encTfChipPkENCFF423LPW\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_tpm_fwd Mcf7ToEgf1_01hr20minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_forward 1 609 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep1.CNhs12424.13036-139F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13036-139F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_ctss_fwd Mcf7ToEgf1_01hr20minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_forward 0 609 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep1.CNhs12424.13036-139F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13036-139F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF134HQP K562 LEF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of LEF1 in K562 from ENCODE 3 (ENCFF134HQP) 0 610 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of LEF1 in K562 from ENCODE 3 (ENCFF134HQP)\ parent encTfChipPk off\ shortLabel K562 LEF1 1\ subGroups cellType=K562 factor=LEF1\ track encTfChipPkENCFF134HQP\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_tpm_rev Mcf7ToEgf1_01hr20minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_reverse 1 610 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep1.CNhs12424.13036-139F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13036-139F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_ctss_rev Mcf7ToEgf1_01hr20minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_reverse 0 610 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep1.CNhs12424.13036-139F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13036-139F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF697VRJ K562 LEF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of LEF1 in K562 from ENCODE 3 (ENCFF697VRJ) 0 611 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of LEF1 in K562 from ENCODE 3 (ENCFF697VRJ)\ parent encTfChipPk off\ shortLabel K562 LEF1 2\ subGroups cellType=K562 factor=LEF1\ track encTfChipPkENCFF697VRJ\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_tpm_fwd Mcf7ToEgf1_01hr20minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_forward 1 611 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep2.CNhs12480.13102-140D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13102-140D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_ctss_fwd Mcf7ToEgf1_01hr20minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_forward 0 611 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep2.CNhs12480.13102-140D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13102-140D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF498MGH K562 MAFF narrowPeak Transcription Factor ChIP-seq Peaks of MAFF in K562 from ENCODE 3 (ENCFF498MGH) 0 612 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MAFF in K562 from ENCODE 3 (ENCFF498MGH)\ parent encTfChipPk off\ shortLabel K562 MAFF\ subGroups cellType=K562 factor=MAFF\ track encTfChipPkENCFF498MGH\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_tpm_rev Mcf7ToEgf1_01hr20minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_reverse 1 612 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep2.CNhs12480.13102-140D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13102-140D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_ctss_rev Mcf7ToEgf1_01hr20minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_reverse 0 612 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep2.CNhs12480.13102-140D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13102-140D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF893SCL K562 MAFK narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in K562 from ENCODE 3 (ENCFF893SCL) 0 613 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MAFK in K562 from ENCODE 3 (ENCFF893SCL)\ parent encTfChipPk off\ shortLabel K562 MAFK\ subGroups cellType=K562 factor=MAFK\ track encTfChipPkENCFF893SCL\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_tpm_fwd Mcf7ToEgf1_01hr20minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_forward 1 613 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep3.CNhs12742.13168-141B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13168-141B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_ctss_fwd Mcf7ToEgf1_01hr20minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_forward 0 613 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep3.CNhs12742.13168-141B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13168-141B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF618VMC K562 MAX 1 narrowPeak Transcription Factor ChIP-seq Peaks of MAX in K562 from ENCODE 3 (ENCFF618VMC) 0 614 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MAX in K562 from ENCODE 3 (ENCFF618VMC)\ parent encTfChipPk off\ shortLabel K562 MAX 1\ subGroups cellType=K562 factor=MAX\ track encTfChipPkENCFF618VMC\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_tpm_rev Mcf7ToEgf1_01hr20minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_reverse 1 614 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep3.CNhs12742.13168-141B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13168-141B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_ctss_rev Mcf7ToEgf1_01hr20minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_reverse 0 614 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep3.CNhs12742.13168-141B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13168-141B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF900NVQ K562 MAX 2 narrowPeak Transcription Factor ChIP-seq Peaks of MAX in K562 from ENCODE 3 (ENCFF900NVQ) 0 615 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MAX in K562 from ENCODE 3 (ENCFF900NVQ)\ parent encTfChipPk off\ shortLabel K562 MAX 2\ subGroups cellType=K562 factor=MAX\ track encTfChipPkENCFF900NVQ\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_tpm_fwd Mcf7ToEgf1_01hr40minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_forward 1 615 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep1.CNhs12425.13037-139F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13037-139F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_ctss_fwd Mcf7ToEgf1_01hr40minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_forward 0 615 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep1.CNhs12425.13037-139F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13037-139F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF617QSK K562 MBD2 narrowPeak Transcription Factor ChIP-seq Peaks of MBD2 in K562 from ENCODE 3 (ENCFF617QSK) 0 616 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MBD2 in K562 from ENCODE 3 (ENCFF617QSK)\ parent encTfChipPk off\ shortLabel K562 MBD2\ subGroups cellType=K562 factor=MBD2\ track encTfChipPkENCFF617QSK\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_tpm_rev Mcf7ToEgf1_01hr40minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_reverse 1 616 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep1.CNhs12425.13037-139F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13037-139F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_ctss_rev Mcf7ToEgf1_01hr40minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_reverse 0 616 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep1.CNhs12425.13037-139F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13037-139F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF043HHG K562 MCM2 1 narrowPeak Transcription Factor ChIP-seq Peaks of MCM2 in K562 from ENCODE 3 (ENCFF043HHG) 0 617 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MCM2 in K562 from ENCODE 3 (ENCFF043HHG)\ parent encTfChipPk off\ shortLabel K562 MCM2 1\ subGroups cellType=K562 factor=MCM2\ track encTfChipPkENCFF043HHG\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_tpm_fwd Mcf7ToEgf1_01hr40minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_forward 1 617 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep2.CNhs12482.13103-140D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13103-140D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_ctss_fwd Mcf7ToEgf1_01hr40minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_forward 0 617 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep2.CNhs12482.13103-140D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13103-140D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF571REC K562 MCM2 2 narrowPeak Transcription Factor ChIP-seq Peaks of MCM2 in K562 from ENCODE 3 (ENCFF571REC) 0 618 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MCM2 in K562 from ENCODE 3 (ENCFF571REC)\ parent encTfChipPk off\ shortLabel K562 MCM2 2\ subGroups cellType=K562 factor=MCM2\ track encTfChipPkENCFF571REC\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_tpm_rev Mcf7ToEgf1_01hr40minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_reverse 1 618 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep2.CNhs12482.13103-140D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13103-140D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_ctss_rev Mcf7ToEgf1_01hr40minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_reverse 0 618 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep2.CNhs12482.13103-140D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13103-140D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF672PYP K562 MCM3 narrowPeak Transcription Factor ChIP-seq Peaks of MCM3 in K562 from ENCODE 3 (ENCFF672PYP) 0 619 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MCM3 in K562 from ENCODE 3 (ENCFF672PYP)\ parent encTfChipPk off\ shortLabel K562 MCM3\ subGroups cellType=K562 factor=MCM3\ track encTfChipPkENCFF672PYP\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_tpm_fwd Mcf7ToEgf1_01hr40minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_forward 1 619 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep3.CNhs12743.13169-141C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13169-141C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_ctss_fwd Mcf7ToEgf1_01hr40minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_forward 0 619 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep3.CNhs12743.13169-141C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13169-141C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF603SXI K562 MCM5 1 narrowPeak Transcription Factor ChIP-seq Peaks of MCM5 in K562 from ENCODE 3 (ENCFF603SXI) 0 620 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MCM5 in K562 from ENCODE 3 (ENCFF603SXI)\ parent encTfChipPk off\ shortLabel K562 MCM5 1\ subGroups cellType=K562 factor=MCM5\ track encTfChipPkENCFF603SXI\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_tpm_rev Mcf7ToEgf1_01hr40minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_reverse 1 620 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep3.CNhs12743.13169-141C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13169-141C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_ctss_rev Mcf7ToEgf1_01hr40minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_reverse 0 620 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep3.CNhs12743.13169-141C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13169-141C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF658SJY K562 MCM5 2 narrowPeak Transcription Factor ChIP-seq Peaks of MCM5 in K562 from ENCODE 3 (ENCFF658SJY) 0 621 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MCM5 in K562 from ENCODE 3 (ENCFF658SJY)\ parent encTfChipPk off\ shortLabel K562 MCM5 2\ subGroups cellType=K562 factor=MCM5\ track encTfChipPkENCFF658SJY\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_tpm_fwd Mcf7ToEgf1_02hr00minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_forward 1 621 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep1.CNhs12426.13038-139F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13038-139F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_ctss_fwd Mcf7ToEgf1_02hr00minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_forward 0 621 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep1.CNhs12426.13038-139F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13038-139F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF159MQI K562 MCM7 1 narrowPeak Transcription Factor ChIP-seq Peaks of MCM7 in K562 from ENCODE 3 (ENCFF159MQI) 0 622 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MCM7 in K562 from ENCODE 3 (ENCFF159MQI)\ parent encTfChipPk off\ shortLabel K562 MCM7 1\ subGroups cellType=K562 factor=MCM7\ track encTfChipPkENCFF159MQI\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_tpm_rev Mcf7ToEgf1_02hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_reverse 1 622 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep1.CNhs12426.13038-139F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13038-139F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_ctss_rev Mcf7ToEgf1_02hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_reverse 0 622 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep1.CNhs12426.13038-139F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13038-139F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF914ELA K562 MCM7 2 narrowPeak Transcription Factor ChIP-seq Peaks of MCM7 in K562 from ENCODE 3 (ENCFF914ELA) 0 623 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MCM7 in K562 from ENCODE 3 (ENCFF914ELA)\ parent encTfChipPk off\ shortLabel K562 MCM7 2\ subGroups cellType=K562 factor=MCM7\ track encTfChipPkENCFF914ELA\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_tpm_fwd Mcf7ToEgf1_02hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_forward 1 623 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep2.CNhs12483.13104-140D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13104-140D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_ctss_fwd Mcf7ToEgf1_02hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_forward 0 623 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep2.CNhs12483.13104-140D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13104-140D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF288ZRD K562 MCM7 3 narrowPeak Transcription Factor ChIP-seq Peaks of MCM7 in K562 from ENCODE 3 (ENCFF288ZRD) 0 624 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MCM7 in K562 from ENCODE 3 (ENCFF288ZRD)\ parent encTfChipPk off\ shortLabel K562 MCM7 3\ subGroups cellType=K562 factor=MCM7\ track encTfChipPkENCFF288ZRD\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_tpm_rev Mcf7ToEgf1_02hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_reverse 1 624 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep2.CNhs12483.13104-140D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13104-140D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_ctss_rev Mcf7ToEgf1_02hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_reverse 0 624 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep2.CNhs12483.13104-140D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13104-140D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF310SMW K562 MEF2A narrowPeak Transcription Factor ChIP-seq Peaks of MEF2A in K562 from ENCODE 3 (ENCFF310SMW) 0 625 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MEF2A in K562 from ENCODE 3 (ENCFF310SMW)\ parent encTfChipPk off\ shortLabel K562 MEF2A\ subGroups cellType=K562 factor=MEF2A\ track encTfChipPkENCFF310SMW\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_tpm_fwd Mcf7ToEgf1_02hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_forward 1 625 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep3.CNhs12744.13170-141C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13170-141C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_ctss_fwd Mcf7ToEgf1_02hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_forward 0 625 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep3.CNhs12744.13170-141C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13170-141C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF937UEE K562 MEIS2 narrowPeak Transcription Factor ChIP-seq Peaks of MEIS2 in K562 from ENCODE 3 (ENCFF937UEE) 0 626 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MEIS2 in K562 from ENCODE 3 (ENCFF937UEE)\ parent encTfChipPk off\ shortLabel K562 MEIS2\ subGroups cellType=K562 factor=MEIS2\ track encTfChipPkENCFF937UEE\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_tpm_rev Mcf7ToEgf1_02hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_reverse 1 626 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep3.CNhs12744.13170-141C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13170-141C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_ctss_rev Mcf7ToEgf1_02hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_reverse 0 626 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep3.CNhs12744.13170-141C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13170-141C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF525MPI K562 MGA narrowPeak Transcription Factor ChIP-seq Peaks of MGA in K562 from ENCODE 3 (ENCFF525MPI) 0 627 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MGA in K562 from ENCODE 3 (ENCFF525MPI)\ parent encTfChipPk off\ shortLabel K562 MGA\ subGroups cellType=K562 factor=MGA\ track encTfChipPkENCFF525MPI\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_tpm_fwd Mcf7ToEgf1_02hr30minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_forward 1 627 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep1.CNhs12427.13039-139F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13039-139F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_ctss_fwd Mcf7ToEgf1_02hr30minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_forward 0 627 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep1.CNhs12427.13039-139F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13039-139F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF163YZB K562 MIER1 narrowPeak Transcription Factor ChIP-seq Peaks of MIER1 in K562 from ENCODE 3 (ENCFF163YZB) 0 628 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MIER1 in K562 from ENCODE 3 (ENCFF163YZB)\ parent encTfChipPk off\ shortLabel K562 MIER1\ subGroups cellType=K562 factor=MIER1\ track encTfChipPkENCFF163YZB\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_tpm_rev Mcf7ToEgf1_02hr30minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_reverse 1 628 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep1.CNhs12427.13039-139F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13039-139F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_ctss_rev Mcf7ToEgf1_02hr30minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_reverse 0 628 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep1.CNhs12427.13039-139F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13039-139F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF262TMM K562 MITF 1 narrowPeak Transcription Factor ChIP-seq Peaks of MITF in K562 from ENCODE 3 (ENCFF262TMM) 0 629 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MITF in K562 from ENCODE 3 (ENCFF262TMM)\ parent encTfChipPk off\ shortLabel K562 MITF 1\ subGroups cellType=K562 factor=MITF\ track encTfChipPkENCFF262TMM\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_tpm_fwd Mcf7ToEgf1_02hr30minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_forward 1 629 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep2.CNhs12484.13105-140D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13105-140D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_ctss_fwd Mcf7ToEgf1_02hr30minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_forward 0 629 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep2.CNhs12484.13105-140D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13105-140D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF071NYD K562 MITF 2 narrowPeak Transcription Factor ChIP-seq Peaks of MITF in K562 from ENCODE 3 (ENCFF071NYD) 0 630 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MITF in K562 from ENCODE 3 (ENCFF071NYD)\ parent encTfChipPk off\ shortLabel K562 MITF 2\ subGroups cellType=K562 factor=MITF\ track encTfChipPkENCFF071NYD\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_tpm_rev Mcf7ToEgf1_02hr30minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_reverse 1 630 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep2.CNhs12484.13105-140D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13105-140D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_ctss_rev Mcf7ToEgf1_02hr30minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_reverse 0 630 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep2.CNhs12484.13105-140D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13105-140D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF010AIG K562 MLLT1 1 narrowPeak Transcription Factor ChIP-seq Peaks of MLLT1 in K562 from ENCODE 3 (ENCFF010AIG) 0 631 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MLLT1 in K562 from ENCODE 3 (ENCFF010AIG)\ parent encTfChipPk off\ shortLabel K562 MLLT1 1\ subGroups cellType=K562 factor=MLLT1\ track encTfChipPkENCFF010AIG\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_tpm_fwd Mcf7ToEgf1_02hr30minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_forward 1 631 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep3.CNhs12746.13171-141C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13171-141C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_ctss_fwd Mcf7ToEgf1_02hr30minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_forward 0 631 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep3.CNhs12746.13171-141C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13171-141C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF388LUX K562 MLLT1 2 narrowPeak Transcription Factor ChIP-seq Peaks of MLLT1 in K562 from ENCODE 3 (ENCFF388LUX) 0 632 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MLLT1 in K562 from ENCODE 3 (ENCFF388LUX)\ parent encTfChipPk off\ shortLabel K562 MLLT1 2\ subGroups cellType=K562 factor=MLLT1\ track encTfChipPkENCFF388LUX\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_tpm_rev Mcf7ToEgf1_02hr30minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_reverse 1 632 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep3.CNhs12746.13171-141C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13171-141C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_ctss_rev Mcf7ToEgf1_02hr30minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_reverse 0 632 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep3.CNhs12746.13171-141C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13171-141C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF926CRV K562 MNT 1 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in K562 from ENCODE 3 (ENCFF926CRV) 0 633 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MNT in K562 from ENCODE 3 (ENCFF926CRV)\ parent encTfChipPk off\ shortLabel K562 MNT 1\ subGroups cellType=K562 factor=MNT\ track encTfChipPkENCFF926CRV\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_tpm_fwd Mcf7ToEgf1_03hr00minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_forward 1 633 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep1.CNhs12428.13040-139F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13040-139F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_ctss_fwd Mcf7ToEgf1_03hr00minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_forward 0 633 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep1.CNhs12428.13040-139F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13040-139F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF454QQD K562 MNT 2 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in K562 from ENCODE 3 (ENCFF454QQD) 0 634 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MNT in K562 from ENCODE 3 (ENCFF454QQD)\ parent encTfChipPk off\ shortLabel K562 MNT 2\ subGroups cellType=K562 factor=MNT\ track encTfChipPkENCFF454QQD\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_tpm_rev Mcf7ToEgf1_03hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_reverse 1 634 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep1.CNhs12428.13040-139F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13040-139F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_ctss_rev Mcf7ToEgf1_03hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_reverse 0 634 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep1.CNhs12428.13040-139F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13040-139F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF459DYU K562 MNT 3 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in K562 from ENCODE 3 (ENCFF459DYU) 0 635 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MNT in K562 from ENCODE 3 (ENCFF459DYU)\ parent encTfChipPk off\ shortLabel K562 MNT 3\ subGroups cellType=K562 factor=MNT\ track encTfChipPkENCFF459DYU\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_tpm_fwd Mcf7ToEgf1_03hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_forward 1 635 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep2.CNhs12485.13106-140E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13106-140E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_ctss_fwd Mcf7ToEgf1_03hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_forward 0 635 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep2.CNhs12485.13106-140E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13106-140E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF801KEW K562 MTA1 narrowPeak Transcription Factor ChIP-seq Peaks of MTA1 in K562 from ENCODE 3 (ENCFF801KEW) 0 636 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MTA1 in K562 from ENCODE 3 (ENCFF801KEW)\ parent encTfChipPk off\ shortLabel K562 MTA1\ subGroups cellType=K562 factor=MTA1\ track encTfChipPkENCFF801KEW\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_tpm_rev Mcf7ToEgf1_03hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_reverse 1 636 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep2.CNhs12485.13106-140E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13106-140E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_ctss_rev Mcf7ToEgf1_03hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_reverse 0 636 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep2.CNhs12485.13106-140E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13106-140E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF558XIL K562 MTA2 1 narrowPeak Transcription Factor ChIP-seq Peaks of MTA2 in K562 from ENCODE 3 (ENCFF558XIL) 0 637 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MTA2 in K562 from ENCODE 3 (ENCFF558XIL)\ parent encTfChipPk off\ shortLabel K562 MTA2 1\ subGroups cellType=K562 factor=MTA2\ track encTfChipPkENCFF558XIL\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_tpm_fwd Mcf7ToEgf1_03hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_forward 1 637 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep3.CNhs12747.13172-141C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13172-141C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_ctss_fwd Mcf7ToEgf1_03hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_forward 0 637 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep3.CNhs12747.13172-141C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13172-141C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF713ZVD K562 MTA2 2 narrowPeak Transcription Factor ChIP-seq Peaks of MTA2 in K562 from ENCODE 3 (ENCFF713ZVD) 0 638 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MTA2 in K562 from ENCODE 3 (ENCFF713ZVD)\ parent encTfChipPk off\ shortLabel K562 MTA2 2\ subGroups cellType=K562 factor=MTA2\ track encTfChipPkENCFF713ZVD\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_tpm_rev Mcf7ToEgf1_03hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_reverse 1 638 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep3.CNhs12747.13172-141C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13172-141C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_ctss_rev Mcf7ToEgf1_03hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_reverse 0 638 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep3.CNhs12747.13172-141C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13172-141C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF459XLR K562 MTA3 narrowPeak Transcription Factor ChIP-seq Peaks of MTA3 in K562 from ENCODE 3 (ENCFF459XLR) 0 639 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MTA3 in K562 from ENCODE 3 (ENCFF459XLR)\ parent encTfChipPk off\ shortLabel K562 MTA3\ subGroups cellType=K562 factor=MTA3\ track encTfChipPkENCFF459XLR\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_tpm_fwd Mcf7ToEgf1_03hr30minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_forward 1 639 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep1.CNhs12429.13041-139F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13041-139F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_ctss_fwd Mcf7ToEgf1_03hr30minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_forward 0 639 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep1.CNhs12429.13041-139F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13041-139F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF243QTL K562 MXI1 narrowPeak Transcription Factor ChIP-seq Peaks of MXI1 in K562 from ENCODE 3 (ENCFF243QTL) 0 640 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MXI1 in K562 from ENCODE 3 (ENCFF243QTL)\ parent encTfChipPk off\ shortLabel K562 MXI1\ subGroups cellType=K562 factor=MXI1\ track encTfChipPkENCFF243QTL\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_tpm_rev Mcf7ToEgf1_03hr30minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_reverse 1 640 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep1.CNhs12429.13041-139F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13041-139F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_ctss_rev Mcf7ToEgf1_03hr30minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_reverse 0 640 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep1.CNhs12429.13041-139F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13041-139F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF905KOD K562 MYBL2 narrowPeak Transcription Factor ChIP-seq Peaks of MYBL2 in K562 from ENCODE 3 (ENCFF905KOD) 0 641 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MYBL2 in K562 from ENCODE 3 (ENCFF905KOD)\ parent encTfChipPk off\ shortLabel K562 MYBL2\ subGroups cellType=K562 factor=MYBL2\ track encTfChipPkENCFF905KOD\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_tpm_fwd Mcf7ToEgf1_03hr30minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_forward 1 641 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep2.CNhs12486.13107-140E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13107-140E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_ctss_fwd Mcf7ToEgf1_03hr30minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_forward 0 641 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep2.CNhs12486.13107-140E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13107-140E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF700TLG K562 MYC 1 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF700TLG) 0 642 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF700TLG)\ parent encTfChipPk on\ shortLabel K562 MYC 1\ subGroups cellType=K562 factor=MYC\ track encTfChipPkENCFF700TLG\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_tpm_rev Mcf7ToEgf1_03hr30minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_reverse 1 642 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep2.CNhs12486.13107-140E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13107-140E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_ctss_rev Mcf7ToEgf1_03hr30minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_reverse 0 642 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep2.CNhs12486.13107-140E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13107-140E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF339AQP K562 MYC 2 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF339AQP) 0 643 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF339AQP)\ parent encTfChipPk off\ shortLabel K562 MYC 2\ subGroups cellType=K562 factor=MYC\ track encTfChipPkENCFF339AQP\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_tpm_fwd Mcf7ToEgf1_03hr30minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_forward 1 643 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep3.CNhs12748.13173-141C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13173-141C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_ctss_fwd Mcf7ToEgf1_03hr30minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_forward 0 643 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep3.CNhs12748.13173-141C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13173-141C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF492XUU K562 MYC 3 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF492XUU) 0 644 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF492XUU)\ parent encTfChipPk off\ shortLabel K562 MYC 3\ subGroups cellType=K562 factor=MYC\ track encTfChipPkENCFF492XUU\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_tpm_rev Mcf7ToEgf1_03hr30minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_reverse 1 644 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep3.CNhs12748.13173-141C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13173-141C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_ctss_rev Mcf7ToEgf1_03hr30minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_reverse 0 644 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep3.CNhs12748.13173-141C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13173-141C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF527EGF K562 MYC 4 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF527EGF) 0 645 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF527EGF)\ parent encTfChipPk off\ shortLabel K562 MYC 4\ subGroups cellType=K562 factor=MYC\ track encTfChipPkENCFF527EGF\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_tpm_fwd Mcf7ToEgf1_04hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_forward 1 645 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep1.CNhs12430.13042-139F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13042-139F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_04hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_ctss_fwd Mcf7ToEgf1_04hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_forward 0 645 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep1.CNhs12430.13042-139F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13042-139F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_04hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF605WXD K562 MYC 5 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF605WXD) 0 646 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF605WXD)\ parent encTfChipPk off\ shortLabel K562 MYC 5\ subGroups cellType=K562 factor=MYC\ track encTfChipPkENCFF605WXD\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_tpm_rev Mcf7ToEgf1_04hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_reverse 1 646 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep1.CNhs12430.13042-139F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13042-139F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_04hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_ctss_rev Mcf7ToEgf1_04hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_reverse 0 646 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep1.CNhs12430.13042-139F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13042-139F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_04hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF272LLG K562 MYNN narrowPeak Transcription Factor ChIP-seq Peaks of MYNN in K562 from ENCODE 3 (ENCFF272LLG) 0 647 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MYNN in K562 from ENCODE 3 (ENCFF272LLG)\ parent encTfChipPk off\ shortLabel K562 MYNN\ subGroups cellType=K562 factor=MYNN\ track encTfChipPkENCFF272LLG\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_tpm_fwd Mcf7ToEgf1_04hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_forward 1 647 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep2.CNhs12487.13108-140E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13108-140E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_04hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_ctss_fwd Mcf7ToEgf1_04hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_forward 0 647 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep2.CNhs12487.13108-140E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13108-140E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_04hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF728KKP K562 NBN narrowPeak Transcription Factor ChIP-seq Peaks of NBN in K562 from ENCODE 3 (ENCFF728KKP) 0 648 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NBN in K562 from ENCODE 3 (ENCFF728KKP)\ parent encTfChipPk off\ shortLabel K562 NBN\ subGroups cellType=K562 factor=NBN\ track encTfChipPkENCFF728KKP\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_tpm_rev Mcf7ToEgf1_04hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_reverse 1 648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep2.CNhs12487.13108-140E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13108-140E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_04hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_ctss_rev Mcf7ToEgf1_04hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_reverse 0 648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep2.CNhs12487.13108-140E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13108-140E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_04hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF589OOF K562 NCOA1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA1 in K562 from ENCODE 3 (ENCFF589OOF) 0 649 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NCOA1 in K562 from ENCODE 3 (ENCFF589OOF)\ parent encTfChipPk off\ shortLabel K562 NCOA1 1\ subGroups cellType=K562 factor=NCOA1\ track encTfChipPkENCFF589OOF\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_tpm_fwd Mcf7ToEgf1_04hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_forward 1 649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep3.CNhs12749.13174-141C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13174-141C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_04hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_ctss_fwd Mcf7ToEgf1_04hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_forward 0 649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep3.CNhs12749.13174-141C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13174-141C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_04hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF474QDS K562 NCOA1 2 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA1 in K562 from ENCODE 3 (ENCFF474QDS) 0 650 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NCOA1 in K562 from ENCODE 3 (ENCFF474QDS)\ parent encTfChipPk off\ shortLabel K562 NCOA1 2\ subGroups cellType=K562 factor=NCOA1\ track encTfChipPkENCFF474QDS\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_tpm_rev Mcf7ToEgf1_04hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_reverse 1 650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep3.CNhs12749.13174-141C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13174-141C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_04hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_ctss_rev Mcf7ToEgf1_04hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_reverse 0 650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep3.CNhs12749.13174-141C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13174-141C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_04hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF382RFJ K562 NCOA1 3 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA1 in K562 from ENCODE 3 (ENCFF382RFJ) 0 651 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NCOA1 in K562 from ENCODE 3 (ENCFF382RFJ)\ parent encTfChipPk off\ shortLabel K562 NCOA1 3\ subGroups cellType=K562 factor=NCOA1\ track encTfChipPkENCFF382RFJ\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_tpm_fwd Mcf7ToEgf1_05hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_forward 1 651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep1.CNhs12431.13043-139G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13043-139G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_05hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_ctss_fwd Mcf7ToEgf1_05hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_forward 0 651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep1.CNhs12431.13043-139G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13043-139G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_05hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF071SOH K562 NCOA2 1 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA2 in K562 from ENCODE 3 (ENCFF071SOH) 0 652 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NCOA2 in K562 from ENCODE 3 (ENCFF071SOH)\ parent encTfChipPk off\ shortLabel K562 NCOA2 1\ subGroups cellType=K562 factor=NCOA2\ track encTfChipPkENCFF071SOH\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_tpm_rev Mcf7ToEgf1_05hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_reverse 1 652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep1.CNhs12431.13043-139G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13043-139G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_05hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_ctss_rev Mcf7ToEgf1_05hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_reverse 0 652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep1.CNhs12431.13043-139G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13043-139G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_05hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF584SNZ K562 NCOA2 2 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA2 in K562 from ENCODE 3 (ENCFF584SNZ) 0 653 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NCOA2 in K562 from ENCODE 3 (ENCFF584SNZ)\ parent encTfChipPk off\ shortLabel K562 NCOA2 2\ subGroups cellType=K562 factor=NCOA2\ track encTfChipPkENCFF584SNZ\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_tpm_fwd Mcf7ToEgf1_05hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_forward 1 653 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep2.CNhs12488.13109-140E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13109-140E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_05hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_ctss_fwd Mcf7ToEgf1_05hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_forward 0 653 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep2.CNhs12488.13109-140E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13109-140E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_05hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF749HKV K562 NCOA4 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA4 in K562 from ENCODE 3 (ENCFF749HKV) 0 654 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NCOA4 in K562 from ENCODE 3 (ENCFF749HKV)\ parent encTfChipPk off\ shortLabel K562 NCOA4\ subGroups cellType=K562 factor=NCOA4\ track encTfChipPkENCFF749HKV\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_tpm_rev Mcf7ToEgf1_05hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_reverse 1 654 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep2.CNhs12488.13109-140E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13109-140E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_05hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_ctss_rev Mcf7ToEgf1_05hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_reverse 0 654 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep2.CNhs12488.13109-140E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13109-140E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_05hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF438BWN K562 NCOA6 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA6 in K562 from ENCODE 3 (ENCFF438BWN) 0 655 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NCOA6 in K562 from ENCODE 3 (ENCFF438BWN)\ parent encTfChipPk off\ shortLabel K562 NCOA6\ subGroups cellType=K562 factor=NCOA6\ track encTfChipPkENCFF438BWN\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_tpm_fwd Mcf7ToEgf1_05hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_forward 1 655 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep3.CNhs12750.13175-141C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13175-141C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_05hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_ctss_fwd Mcf7ToEgf1_05hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_forward 0 655 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep3.CNhs12750.13175-141C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13175-141C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_05hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF856HUK K562 NCOR1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NCOR1 in K562 from ENCODE 3 (ENCFF856HUK) 0 656 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NCOR1 in K562 from ENCODE 3 (ENCFF856HUK)\ parent encTfChipPk off\ shortLabel K562 NCOR1 1\ subGroups cellType=K562 factor=NCOR1\ track encTfChipPkENCFF856HUK\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_tpm_rev Mcf7ToEgf1_05hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_reverse 1 656 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep3.CNhs12750.13175-141C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13175-141C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_05hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_ctss_rev Mcf7ToEgf1_05hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_reverse 0 656 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep3.CNhs12750.13175-141C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13175-141C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_05hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF007ZUL K562 NCOR1 2 narrowPeak Transcription Factor ChIP-seq Peaks of NCOR1 in K562 from ENCODE 3 (ENCFF007ZUL) 0 657 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NCOR1 in K562 from ENCODE 3 (ENCFF007ZUL)\ parent encTfChipPk off\ shortLabel K562 NCOR1 2\ subGroups cellType=K562 factor=NCOR1\ track encTfChipPkENCFF007ZUL\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_tpm_fwd Mcf7ToEgf1_06hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_forward 1 657 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep1.CNhs12432.13044-139G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13044-139G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_06hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_ctss_fwd Mcf7ToEgf1_06hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_forward 0 657 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep1.CNhs12432.13044-139G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13044-139G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_06hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF638IIC K562 NCOR1 3 narrowPeak Transcription Factor ChIP-seq Peaks of NCOR1 in K562 from ENCODE 3 (ENCFF638IIC) 0 658 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NCOR1 in K562 from ENCODE 3 (ENCFF638IIC)\ parent encTfChipPk off\ shortLabel K562 NCOR1 3\ subGroups cellType=K562 factor=NCOR1\ track encTfChipPkENCFF638IIC\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_tpm_rev Mcf7ToEgf1_06hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_reverse 1 658 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep1.CNhs12432.13044-139G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13044-139G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_06hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_ctss_rev Mcf7ToEgf1_06hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_reverse 0 658 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep1.CNhs12432.13044-139G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13044-139G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_06hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF755APC K562 NEUROD1 narrowPeak Transcription Factor ChIP-seq Peaks of NEUROD1 in K562 from ENCODE 3 (ENCFF755APC) 0 659 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NEUROD1 in K562 from ENCODE 3 (ENCFF755APC)\ parent encTfChipPk off\ shortLabel K562 NEUROD1\ subGroups cellType=K562 factor=NEUROD1\ track encTfChipPkENCFF755APC\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_tpm_fwd Mcf7ToEgf1_06hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_forward 1 659 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep2.CNhs12489.13110-140E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13110-140E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_06hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_ctss_fwd Mcf7ToEgf1_06hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_forward 0 659 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep2.CNhs12489.13110-140E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13110-140E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_06hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF082EPO K562 NFATC3 1 narrowPeak Transcription Factor ChIP-seq Peaks of NFATC3 in K562 from ENCODE 3 (ENCFF082EPO) 0 660 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NFATC3 in K562 from ENCODE 3 (ENCFF082EPO)\ parent encTfChipPk off\ shortLabel K562 NFATC3 1\ subGroups cellType=K562 factor=NFATC3\ track encTfChipPkENCFF082EPO\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_tpm_rev Mcf7ToEgf1_06hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_reverse 1 660 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep2.CNhs12489.13110-140E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13110-140E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_06hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_ctss_rev Mcf7ToEgf1_06hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_reverse 0 660 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep2.CNhs12489.13110-140E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13110-140E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_06hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF430JFH K562 NFATC3 2 narrowPeak Transcription Factor ChIP-seq Peaks of NFATC3 in K562 from ENCODE 3 (ENCFF430JFH) 0 661 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NFATC3 in K562 from ENCODE 3 (ENCFF430JFH)\ parent encTfChipPk off\ shortLabel K562 NFATC3 2\ subGroups cellType=K562 factor=NFATC3\ track encTfChipPkENCFF430JFH\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_tpm_fwd Mcf7ToEgf1_06hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_forward 1 661 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep3.CNhs12751.13176-141C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13176-141C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_06hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_ctss_fwd Mcf7ToEgf1_06hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_forward 0 661 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep3.CNhs12751.13176-141C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13176-141C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_06hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF312XHI K562 NFE2 narrowPeak Transcription Factor ChIP-seq Peaks of NFE2 in K562 from ENCODE 3 (ENCFF312XHI) 0 662 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NFE2 in K562 from ENCODE 3 (ENCFF312XHI)\ parent encTfChipPk off\ shortLabel K562 NFE2\ subGroups cellType=K562 factor=NFE2\ track encTfChipPkENCFF312XHI\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_tpm_rev Mcf7ToEgf1_06hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_reverse 1 662 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep3.CNhs12751.13176-141C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13176-141C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_06hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_ctss_rev Mcf7ToEgf1_06hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_reverse 0 662 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep3.CNhs12751.13176-141C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13176-141C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_06hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF092TVM K562 NFIC narrowPeak Transcription Factor ChIP-seq Peaks of NFIC in K562 from ENCODE 3 (ENCFF092TVM) 0 663 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NFIC in K562 from ENCODE 3 (ENCFF092TVM)\ parent encTfChipPk off\ shortLabel K562 NFIC\ subGroups cellType=K562 factor=NFIC\ track encTfChipPkENCFF092TVM\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_tpm_fwd Mcf7ToEgf1_07hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_forward 1 663 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep1.CNhs12434.13045-139G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13045-139G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_07hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_ctss_fwd Mcf7ToEgf1_07hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_forward 0 663 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep1.CNhs12434.13045-139G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13045-139G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_07hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF158FUG K562 NFRKB 1 narrowPeak Transcription Factor ChIP-seq Peaks of NFRKB in K562 from ENCODE 3 (ENCFF158FUG) 0 664 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NFRKB in K562 from ENCODE 3 (ENCFF158FUG)\ parent encTfChipPk off\ shortLabel K562 NFRKB 1\ subGroups cellType=K562 factor=NFRKB\ track encTfChipPkENCFF158FUG\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_tpm_rev Mcf7ToEgf1_07hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_reverse 1 664 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep1.CNhs12434.13045-139G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13045-139G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_07hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_ctss_rev Mcf7ToEgf1_07hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_reverse 0 664 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep1.CNhs12434.13045-139G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13045-139G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_07hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF779KIS K562 NFRKB 2 narrowPeak Transcription Factor ChIP-seq Peaks of NFRKB in K562 from ENCODE 3 (ENCFF779KIS) 0 665 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NFRKB in K562 from ENCODE 3 (ENCFF779KIS)\ parent encTfChipPk off\ shortLabel K562 NFRKB 2\ subGroups cellType=K562 factor=NFRKB\ track encTfChipPkENCFF779KIS\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_tpm_fwd Mcf7ToEgf1_07hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_forward 1 665 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep2.CNhs12490.13111-140E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13111-140E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_07hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_ctss_fwd Mcf7ToEgf1_07hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_forward 0 665 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep2.CNhs12490.13111-140E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13111-140E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_07hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF329STX K562 NFXL1 narrowPeak Transcription Factor ChIP-seq Peaks of NFXL1 in K562 from ENCODE 3 (ENCFF329STX) 0 666 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NFXL1 in K562 from ENCODE 3 (ENCFF329STX)\ parent encTfChipPk off\ shortLabel K562 NFXL1\ subGroups cellType=K562 factor=NFXL1\ track encTfChipPkENCFF329STX\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_tpm_rev Mcf7ToEgf1_07hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_reverse 1 666 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep2.CNhs12490.13111-140E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13111-140E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_07hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_ctss_rev Mcf7ToEgf1_07hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_reverse 0 666 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep2.CNhs12490.13111-140E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13111-140E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_07hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF305OOU K562 NR0B1 narrowPeak Transcription Factor ChIP-seq Peaks of NR0B1 in K562 from ENCODE 3 (ENCFF305OOU) 0 667 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NR0B1 in K562 from ENCODE 3 (ENCFF305OOU)\ parent encTfChipPk off\ shortLabel K562 NR0B1\ subGroups cellType=K562 factor=NR0B1\ track encTfChipPkENCFF305OOU\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_tpm_fwd Mcf7ToEgf1_07hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_forward 1 667 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep3.CNhs12752.13177-141C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13177-141C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_07hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_ctss_fwd Mcf7ToEgf1_07hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_forward 0 667 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep3.CNhs12752.13177-141C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13177-141C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_07hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF023XHV K562 NR2C1 narrowPeak Transcription Factor ChIP-seq Peaks of NR2C1 in K562 from ENCODE 3 (ENCFF023XHV) 0 668 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NR2C1 in K562 from ENCODE 3 (ENCFF023XHV)\ parent encTfChipPk off\ shortLabel K562 NR2C1\ subGroups cellType=K562 factor=NR2C1\ track encTfChipPkENCFF023XHV\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_tpm_rev Mcf7ToEgf1_07hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_reverse 1 668 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep3.CNhs12752.13177-141C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13177-141C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_07hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_ctss_rev Mcf7ToEgf1_07hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_reverse 0 668 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep3.CNhs12752.13177-141C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13177-141C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_07hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF791ZPU K562 NR2C2 narrowPeak Transcription Factor ChIP-seq Peaks of NR2C2 in K562 from ENCODE 3 (ENCFF791ZPU) 0 669 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NR2C2 in K562 from ENCODE 3 (ENCFF791ZPU)\ parent encTfChipPk off\ shortLabel K562 NR2C2\ subGroups cellType=K562 factor=NR2C2\ track encTfChipPkENCFF791ZPU\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_tpm_fwd Mcf7ToEgf1_08hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_forward 1 669 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep2.CNhs12491.13112-140E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13112-140E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_08hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_ctss_fwd Mcf7ToEgf1_08hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_forward 0 669 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep2.CNhs12491.13112-140E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13112-140E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_08hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF363IQN K562 NR2F1 narrowPeak Transcription Factor ChIP-seq Peaks of NR2F1 in K562 from ENCODE 3 (ENCFF363IQN) 0 670 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NR2F1 in K562 from ENCODE 3 (ENCFF363IQN)\ parent encTfChipPk off\ shortLabel K562 NR2F1\ subGroups cellType=K562 factor=NR2F1\ track encTfChipPkENCFF363IQN\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_tpm_rev Mcf7ToEgf1_08hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_reverse 1 670 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep2.CNhs12491.13112-140E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13112-140E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_08hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_ctss_rev Mcf7ToEgf1_08hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_reverse 0 670 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep2.CNhs12491.13112-140E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13112-140E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_08hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF118HUH K562 NR2F2 narrowPeak Transcription Factor ChIP-seq Peaks of NR2F2 in K562 from ENCODE 3 (ENCFF118HUH) 0 671 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NR2F2 in K562 from ENCODE 3 (ENCFF118HUH)\ parent encTfChipPk off\ shortLabel K562 NR2F2\ subGroups cellType=K562 factor=NR2F2\ track encTfChipPkENCFF118HUH\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_tpm_fwd Mcf7ToEgf1_08hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_forward 1 671 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep3.CNhs12753.13178-141D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13178-141D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_08hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_ctss_fwd Mcf7ToEgf1_08hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_forward 0 671 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep3.CNhs12753.13178-141D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13178-141D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_08hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF194VBK K562 NR2F6 narrowPeak Transcription Factor ChIP-seq Peaks of NR2F6 in K562 from ENCODE 3 (ENCFF194VBK) 0 672 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NR2F6 in K562 from ENCODE 3 (ENCFF194VBK)\ parent encTfChipPk off\ shortLabel K562 NR2F6\ subGroups cellType=K562 factor=NR2F6\ track encTfChipPkENCFF194VBK\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_tpm_rev Mcf7ToEgf1_08hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_reverse 1 672 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep3.CNhs12753.13178-141D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13178-141D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_08hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_ctss_rev Mcf7ToEgf1_08hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_reverse 0 672 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep3.CNhs12753.13178-141D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13178-141D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_08hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF821YMC K562 NR3C1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in K562 from ENCODE 3 (ENCFF821YMC) 0 673 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in K562 from ENCODE 3 (ENCFF821YMC)\ parent encTfChipPk off\ shortLabel K562 NR3C1 1\ subGroups cellType=K562 factor=NR3C1\ track encTfChipPkENCFF821YMC\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_tpm_fwd Tc:Mcf7ToHrg_00hr15minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_forward 1 673 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep1.CNhs12435.13048-139G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13048-139G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_ctss_fwd Tc:Mcf7ToHrg_00hr15minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_forward 0 673 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep1.CNhs12435.13048-139G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13048-139G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF315MUH K562 NR3C1 2 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in K562 from ENCODE 3 (ENCFF315MUH) 0 674 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in K562 from ENCODE 3 (ENCFF315MUH)\ parent encTfChipPk off\ shortLabel K562 NR3C1 2\ subGroups cellType=K562 factor=NR3C1\ track encTfChipPkENCFF315MUH\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_tpm_rev Tc:Mcf7ToHrg_00hr15minBr1- bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_reverse 1 674 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep1.CNhs12435.13048-139G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13048-139G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_ctss_rev Tc:Mcf7ToHrg_00hr15minBr1- bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_reverse 0 674 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep1.CNhs12435.13048-139G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13048-139G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF543STN K562 NRF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in K562 from ENCODE 3 (ENCFF543STN) 0 675 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in K562 from ENCODE 3 (ENCFF543STN)\ parent encTfChipPk off\ shortLabel K562 NRF1 1\ subGroups cellType=K562 factor=NRF1\ track encTfChipPkENCFF543STN\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_tpm_fwd Tc:Mcf7ToHrg_00hr15minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_forward 1 675 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep2.CNhs12652.13114-140E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13114-140E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_ctss_fwd Tc:Mcf7ToHrg_00hr15minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_forward 0 675 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep2.CNhs12652.13114-140E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13114-140E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF626VDA K562 NRF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in K562 from ENCODE 3 (ENCFF626VDA) 0 676 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in K562 from ENCODE 3 (ENCFF626VDA)\ parent encTfChipPk off\ shortLabel K562 NRF1 2\ subGroups cellType=K562 factor=NRF1\ track encTfChipPkENCFF626VDA\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_tpm_rev Tc:Mcf7ToHrg_00hr15minBr2- bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_reverse 1 676 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep2.CNhs12652.13114-140E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13114-140E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_ctss_rev Tc:Mcf7ToHrg_00hr15minBr2- bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_reverse 0 676 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep2.CNhs12652.13114-140E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13114-140E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF782YFS K562 NRF1 3 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in K562 from ENCODE 3 (ENCFF782YFS) 0 677 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in K562 from ENCODE 3 (ENCFF782YFS)\ parent encTfChipPk off\ shortLabel K562 NRF1 3\ subGroups cellType=K562 factor=NRF1\ track encTfChipPkENCFF782YFS\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_tpm_fwd Tc:Mcf7ToHrg_00hr15minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_forward 1 677 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep3.CNhs12754.13180-141D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13180-141D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_ctss_fwd Tc:Mcf7ToHrg_00hr15minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_forward 0 677 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep3.CNhs12754.13180-141D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13180-141D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF885JMZ K562 NUFIP1 narrowPeak Transcription Factor ChIP-seq Peaks of NUFIP1 in K562 from ENCODE 3 (ENCFF885JMZ) 0 678 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NUFIP1 in K562 from ENCODE 3 (ENCFF885JMZ)\ parent encTfChipPk off\ shortLabel K562 NUFIP1\ subGroups cellType=K562 factor=NUFIP1\ track encTfChipPkENCFF885JMZ\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_tpm_rev Tc:Mcf7ToHrg_00hr15minBr3- bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_reverse 1 678 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep3.CNhs12754.13180-141D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13180-141D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_ctss_rev Tc:Mcf7ToHrg_00hr15minBr3- bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_reverse 0 678 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep3.CNhs12754.13180-141D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13180-141D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF467RYH K562 PCBP1 narrowPeak Transcription Factor ChIP-seq Peaks of PCBP1 in K562 from ENCODE 3 (ENCFF467RYH) 0 679 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PCBP1 in K562 from ENCODE 3 (ENCFF467RYH)\ parent encTfChipPk off\ shortLabel K562 PCBP1\ subGroups cellType=K562 factor=PCBP1\ track encTfChipPkENCFF467RYH\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_tpm_fwd Tc:Mcf7ToHrg_00hr30minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_forward 1 679 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep1.CNhs12436.13049-139G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13049-139G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_ctss_fwd Tc:Mcf7ToHrg_00hr30minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_forward 0 679 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep1.CNhs12436.13049-139G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13049-139G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF941XZW K562 PCBP2 narrowPeak Transcription Factor ChIP-seq Peaks of PCBP2 in K562 from ENCODE 3 (ENCFF941XZW) 0 680 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PCBP2 in K562 from ENCODE 3 (ENCFF941XZW)\ parent encTfChipPk off\ shortLabel K562 PCBP2\ subGroups cellType=K562 factor=PCBP2\ track encTfChipPkENCFF941XZW\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_tpm_rev Tc:Mcf7ToHrg_00hr30minBr1- bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_reverse 1 680 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep1.CNhs12436.13049-139G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13049-139G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_ctss_rev Tc:Mcf7ToHrg_00hr30minBr1- bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_reverse 0 680 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep1.CNhs12436.13049-139G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13049-139G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF988OXX K562 PHB2 narrowPeak Transcription Factor ChIP-seq Peaks of PHB2 in K562 from ENCODE 3 (ENCFF988OXX) 0 681 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PHB2 in K562 from ENCODE 3 (ENCFF988OXX)\ parent encTfChipPk off\ shortLabel K562 PHB2\ subGroups cellType=K562 factor=PHB2\ track encTfChipPkENCFF988OXX\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_tpm_fwd Tc:Mcf7ToHrg_00hr30minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_forward 1 681 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep2.CNhs12653.13115-140F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13115-140F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_ctss_fwd Tc:Mcf7ToHrg_00hr30minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_forward 0 681 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep2.CNhs12653.13115-140F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13115-140F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF259HUS K562 PHF20 narrowPeak Transcription Factor ChIP-seq Peaks of PHF20 in K562 from ENCODE 3 (ENCFF259HUS) 0 682 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PHF20 in K562 from ENCODE 3 (ENCFF259HUS)\ parent encTfChipPk off\ shortLabel K562 PHF20\ subGroups cellType=K562 factor=PHF20\ track encTfChipPkENCFF259HUS\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_tpm_rev Tc:Mcf7ToHrg_00hr30minBr2- bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_reverse 1 682 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep2.CNhs12653.13115-140F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13115-140F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_ctss_rev Tc:Mcf7ToHrg_00hr30minBr2- bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_reverse 0 682 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep2.CNhs12653.13115-140F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13115-140F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF657UVA K562 PHF21A narrowPeak Transcription Factor ChIP-seq Peaks of PHF21A in K562 from ENCODE 3 (ENCFF657UVA) 0 683 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PHF21A in K562 from ENCODE 3 (ENCFF657UVA)\ parent encTfChipPk off\ shortLabel K562 PHF21A\ subGroups cellType=K562 factor=PHF21A\ track encTfChipPkENCFF657UVA\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_tpm_fwd Tc:Mcf7ToHrg_00hr30minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_forward 1 683 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep3.CNhs12755.13181-141D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13181-141D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_ctss_fwd Tc:Mcf7ToHrg_00hr30minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_forward 0 683 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep3.CNhs12755.13181-141D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13181-141D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF952YDR K562 PHF8 narrowPeak Transcription Factor ChIP-seq Peaks of PHF8 in K562 from ENCODE 3 (ENCFF952YDR) 0 684 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PHF8 in K562 from ENCODE 3 (ENCFF952YDR)\ parent encTfChipPk off\ shortLabel K562 PHF8\ subGroups cellType=K562 factor=PHF8\ track encTfChipPkENCFF952YDR\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_tpm_rev Tc:Mcf7ToHrg_00hr30minBr3- bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_reverse 1 684 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep3.CNhs12755.13181-141D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13181-141D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_ctss_rev Tc:Mcf7ToHrg_00hr30minBr3- bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_reverse 0 684 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep3.CNhs12755.13181-141D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13181-141D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF062VBB K562 PKNOX1 narrowPeak Transcription Factor ChIP-seq Peaks of PKNOX1 in K562 from ENCODE 3 (ENCFF062VBB) 0 685 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PKNOX1 in K562 from ENCODE 3 (ENCFF062VBB)\ parent encTfChipPk off\ shortLabel K562 PKNOX1\ subGroups cellType=K562 factor=PKNOX1\ track encTfChipPkENCFF062VBB\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_tpm_fwd Tc:Mcf7ToHrg_00hr45minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_forward 1 685 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep1.CNhs12437.13050-139G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13050-139G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_ctss_fwd Tc:Mcf7ToHrg_00hr45minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_forward 0 685 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep1.CNhs12437.13050-139G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13050-139G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF800QDU K562 PML narrowPeak Transcription Factor ChIP-seq Peaks of PML in K562 from ENCODE 3 (ENCFF800QDU) 0 686 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PML in K562 from ENCODE 3 (ENCFF800QDU)\ parent encTfChipPk off\ shortLabel K562 PML\ subGroups cellType=K562 factor=PML\ track encTfChipPkENCFF800QDU\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_tpm_rev Tc:Mcf7ToHrg_00hr45minBr1- bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_reverse 1 686 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep1.CNhs12437.13050-139G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13050-139G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_ctss_rev Tc:Mcf7ToHrg_00hr45minBr1- bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_reverse 0 686 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep1.CNhs12437.13050-139G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13050-139G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF182YZG K562 POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF182YZG) 0 687 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF182YZG)\ parent encTfChipPk off\ shortLabel K562 POLR2A 1\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF182YZG\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_tpm_fwd Tc:Mcf7ToHrg_00hr45minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_forward 1 687 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep2.CNhs12654.13116-140F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13116-140F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_ctss_fwd Tc:Mcf7ToHrg_00hr45minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_forward 0 687 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep2.CNhs12654.13116-140F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13116-140F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF741JES K562 POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF741JES) 0 688 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF741JES)\ parent encTfChipPk off\ shortLabel K562 POLR2A 2\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF741JES\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_tpm_rev Tc:Mcf7ToHrg_00hr45minBr2- bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_reverse 1 688 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep2.CNhs12654.13116-140F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13116-140F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_ctss_rev Tc:Mcf7ToHrg_00hr45minBr2- bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_reverse 0 688 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep2.CNhs12654.13116-140F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13116-140F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF730DLS K562 POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF730DLS) 0 689 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF730DLS)\ parent encTfChipPk off\ shortLabel K562 POLR2A 3\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF730DLS\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_tpm_fwd Tc:Mcf7ToHrg_00hr45minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_forward 1 689 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep3.CNhs12756.13182-141D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13182-141D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_ctss_fwd Tc:Mcf7ToHrg_00hr45minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_forward 0 689 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep3.CNhs12756.13182-141D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13182-141D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF099NYA K562 POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF099NYA) 0 690 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF099NYA)\ parent encTfChipPk off\ shortLabel K562 POLR2A 4\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF099NYA\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_tpm_rev Tc:Mcf7ToHrg_00hr45minBr3- bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_reverse 1 690 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep3.CNhs12756.13182-141D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13182-141D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_ctss_rev Tc:Mcf7ToHrg_00hr45minBr3- bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_reverse 0 690 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep3.CNhs12756.13182-141D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13182-141D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF881ONC K562 POLR2A 5 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF881ONC) 0 691 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF881ONC)\ parent encTfChipPk off\ shortLabel K562 POLR2A 5\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF881ONC\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_tpm_fwd Tc:Mcf7ToHrg_01hr00minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_forward 1 691 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep1.CNhs12438.13051-139G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13051-139G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_ctss_fwd Tc:Mcf7ToHrg_01hr00minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_forward 0 691 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep1.CNhs12438.13051-139G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13051-139G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF668VIK K562 POLR2A 6 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF668VIK) 0 692 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF668VIK)\ parent encTfChipPk off\ shortLabel K562 POLR2A 6\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF668VIK\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_tpm_rev Tc:Mcf7ToHrg_01hr00minBr1- bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_reverse 1 692 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep1.CNhs12438.13051-139G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13051-139G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_ctss_rev Tc:Mcf7ToHrg_01hr00minBr1- bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_reverse 0 692 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep1.CNhs12438.13051-139G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13051-139G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF285MBX K562 POLR2A 7 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF285MBX) 0 693 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF285MBX)\ parent encTfChipPk off\ shortLabel K562 POLR2A 7\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF285MBX\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_tpm_fwd Tc:Mcf7ToHrg_01hr00minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_forward 1 693 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep2.CNhs12655.13117-140F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13117-140F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_ctss_fwd Tc:Mcf7ToHrg_01hr00minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_forward 0 693 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep2.CNhs12655.13117-140F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13117-140F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF283CUY K562 POLR2G narrowPeak Transcription Factor ChIP-seq Peaks of POLR2G in K562 from ENCODE 3 (ENCFF283CUY) 0 694 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of POLR2G in K562 from ENCODE 3 (ENCFF283CUY)\ parent encTfChipPk off\ shortLabel K562 POLR2G\ subGroups cellType=K562 factor=POLR2G\ track encTfChipPkENCFF283CUY\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_tpm_rev Tc:Mcf7ToHrg_01hr00minBr2- bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_reverse 1 694 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep2.CNhs12655.13117-140F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13117-140F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_ctss_rev Tc:Mcf7ToHrg_01hr00minBr2- bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_reverse 0 694 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep2.CNhs12655.13117-140F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13117-140F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF600HPZ K562 PRDM10 narrowPeak Transcription Factor ChIP-seq Peaks of PRDM10 in K562 from ENCODE 3 (ENCFF600HPZ) 0 695 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PRDM10 in K562 from ENCODE 3 (ENCFF600HPZ)\ parent encTfChipPk off\ shortLabel K562 PRDM10\ subGroups cellType=K562 factor=PRDM10\ track encTfChipPkENCFF600HPZ\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_tpm_fwd Tc:Mcf7ToHrg_01hr00minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_forward 1 695 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep3.CNhs12757.13183-141D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13183-141D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_ctss_fwd Tc:Mcf7ToHrg_01hr00minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_forward 0 695 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep3.CNhs12757.13183-141D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13183-141D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF417RQZ K562 PRPF4 narrowPeak Transcription Factor ChIP-seq Peaks of PRPF4 in K562 from ENCODE 3 (ENCFF417RQZ) 0 696 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PRPF4 in K562 from ENCODE 3 (ENCFF417RQZ)\ parent encTfChipPk off\ shortLabel K562 PRPF4\ subGroups cellType=K562 factor=PRPF4\ track encTfChipPkENCFF417RQZ\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_tpm_rev Tc:Mcf7ToHrg_01hr00minBr3- bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_reverse 1 696 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep3.CNhs12757.13183-141D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13183-141D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_ctss_rev Tc:Mcf7ToHrg_01hr00minBr3- bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_reverse 0 696 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep3.CNhs12757.13183-141D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13183-141D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF917HXV K562 PTBP1 narrowPeak Transcription Factor ChIP-seq Peaks of PTBP1 in K562 from ENCODE 3 (ENCFF917HXV) 0 697 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PTBP1 in K562 from ENCODE 3 (ENCFF917HXV)\ parent encTfChipPk off\ shortLabel K562 PTBP1\ subGroups cellType=K562 factor=PTBP1\ track encTfChipPkENCFF917HXV\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_tpm_fwd Tc:Mcf7ToHrg_01hr20minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_forward 1 697 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep1.CNhs12439.13052-139H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13052-139H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_ctss_fwd Tc:Mcf7ToHrg_01hr20minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_forward 0 697 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep1.CNhs12439.13052-139H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13052-139H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF442XXV K562 PYGO2 narrowPeak Transcription Factor ChIP-seq Peaks of PYGO2 in K562 from ENCODE 3 (ENCFF442XXV) 0 698 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PYGO2 in K562 from ENCODE 3 (ENCFF442XXV)\ parent encTfChipPk off\ shortLabel K562 PYGO2\ subGroups cellType=K562 factor=PYGO2\ track encTfChipPkENCFF442XXV\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_tpm_rev Tc:Mcf7ToHrg_01hr20minBr1- bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_reverse 1 698 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep1.CNhs12439.13052-139H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13052-139H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_ctss_rev Tc:Mcf7ToHrg_01hr20minBr1- bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_reverse 0 698 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep1.CNhs12439.13052-139H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13052-139H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF740OPF K562 RAD51 narrowPeak Transcription Factor ChIP-seq Peaks of RAD51 in K562 from ENCODE 3 (ENCFF740OPF) 0 699 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RAD51 in K562 from ENCODE 3 (ENCFF740OPF)\ parent encTfChipPk off\ shortLabel K562 RAD51\ subGroups cellType=K562 factor=RAD51\ track encTfChipPkENCFF740OPF\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_tpm_fwd Tc:Mcf7ToHrg_01hr20minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_forward 1 699 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep2.CNhs12656.13118-140F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13118-140F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_ctss_fwd Tc:Mcf7ToHrg_01hr20minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_forward 0 699 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep2.CNhs12656.13118-140F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13118-140F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF328QZM K562 RB1 narrowPeak Transcription Factor ChIP-seq Peaks of RB1 in K562 from ENCODE 3 (ENCFF328QZM) 0 700 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RB1 in K562 from ENCODE 3 (ENCFF328QZM)\ parent encTfChipPk off\ shortLabel K562 RB1\ subGroups cellType=K562 factor=RB1\ track encTfChipPkENCFF328QZM\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_tpm_rev Tc:Mcf7ToHrg_01hr20minBr2- bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_reverse 1 700 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep2.CNhs12656.13118-140F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13118-140F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_ctss_rev Tc:Mcf7ToHrg_01hr20minBr2- bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_reverse 0 700 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep2.CNhs12656.13118-140F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13118-140F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF232ASB K562 RBFOX2 narrowPeak Transcription Factor ChIP-seq Peaks of RBFOX2 in K562 from ENCODE 3 (ENCFF232ASB) 0 701 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RBFOX2 in K562 from ENCODE 3 (ENCFF232ASB)\ parent encTfChipPk off\ shortLabel K562 RBFOX2\ subGroups cellType=K562 factor=RBFOX2\ track encTfChipPkENCFF232ASB\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_tpm_fwd Tc:Mcf7ToHrg_01hr20minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_forward 1 701 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep3.CNhs12758.13184-141D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13184-141D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_ctss_fwd Tc:Mcf7ToHrg_01hr20minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_forward 0 701 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep3.CNhs12758.13184-141D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13184-141D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF320YOI K562 RBM14 narrowPeak Transcription Factor ChIP-seq Peaks of RBM14 in K562 from ENCODE 3 (ENCFF320YOI) 0 702 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RBM14 in K562 from ENCODE 3 (ENCFF320YOI)\ parent encTfChipPk off\ shortLabel K562 RBM14\ subGroups cellType=K562 factor=RBM14\ track encTfChipPkENCFF320YOI\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_tpm_rev Tc:Mcf7ToHrg_01hr20minBr3- bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_reverse 1 702 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep3.CNhs12758.13184-141D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13184-141D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_ctss_rev Tc:Mcf7ToHrg_01hr20minBr3- bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_reverse 0 702 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep3.CNhs12758.13184-141D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13184-141D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF563WDZ K562 RBM15 narrowPeak Transcription Factor ChIP-seq Peaks of RBM15 in K562 from ENCODE 3 (ENCFF563WDZ) 0 703 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RBM15 in K562 from ENCODE 3 (ENCFF563WDZ)\ parent encTfChipPk off\ shortLabel K562 RBM15\ subGroups cellType=K562 factor=RBM15\ track encTfChipPkENCFF563WDZ\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_tpm_fwd Tc:Mcf7ToHrg_01hr40minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_forward 1 703 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep1.CNhs12440.13053-139H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13053-139H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_ctss_fwd Tc:Mcf7ToHrg_01hr40minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_forward 0 703 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep1.CNhs12440.13053-139H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13053-139H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF056OIG K562 RBM17 narrowPeak Transcription Factor ChIP-seq Peaks of RBM17 in K562 from ENCODE 3 (ENCFF056OIG) 0 704 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RBM17 in K562 from ENCODE 3 (ENCFF056OIG)\ parent encTfChipPk off\ shortLabel K562 RBM17\ subGroups cellType=K562 factor=RBM17\ track encTfChipPkENCFF056OIG\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_tpm_rev Tc:Mcf7ToHrg_01hr40minBr1- bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_reverse 1 704 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep1.CNhs12440.13053-139H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13053-139H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_ctss_rev Tc:Mcf7ToHrg_01hr40minBr1- bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_reverse 0 704 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep1.CNhs12440.13053-139H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13053-139H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF420IBN K562 RBM22 narrowPeak Transcription Factor ChIP-seq Peaks of RBM22 in K562 from ENCODE 3 (ENCFF420IBN) 0 705 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RBM22 in K562 from ENCODE 3 (ENCFF420IBN)\ parent encTfChipPk off\ shortLabel K562 RBM22\ subGroups cellType=K562 factor=RBM22\ track encTfChipPkENCFF420IBN\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_tpm_fwd Tc:Mcf7ToHrg_01hr40minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_forward 1 705 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep2.CNhs12657.13119-140F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13119-140F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_ctss_fwd Tc:Mcf7ToHrg_01hr40minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_forward 0 705 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep2.CNhs12657.13119-140F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13119-140F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF102XVH K562 RBM25 narrowPeak Transcription Factor ChIP-seq Peaks of RBM25 in K562 from ENCODE 3 (ENCFF102XVH) 0 706 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RBM25 in K562 from ENCODE 3 (ENCFF102XVH)\ parent encTfChipPk off\ shortLabel K562 RBM25\ subGroups cellType=K562 factor=RBM25\ track encTfChipPkENCFF102XVH\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_tpm_rev Tc:Mcf7ToHrg_01hr40minBr2- bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_reverse 1 706 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep2.CNhs12657.13119-140F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13119-140F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_ctss_rev Tc:Mcf7ToHrg_01hr40minBr2- bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_reverse 0 706 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep2.CNhs12657.13119-140F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13119-140F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF670ILH K562 RBM34 narrowPeak Transcription Factor ChIP-seq Peaks of RBM34 in K562 from ENCODE 3 (ENCFF670ILH) 0 707 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RBM34 in K562 from ENCODE 3 (ENCFF670ILH)\ parent encTfChipPk off\ shortLabel K562 RBM34\ subGroups cellType=K562 factor=RBM34\ track encTfChipPkENCFF670ILH\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_tpm_fwd Tc:Mcf7ToHrg_01hr40minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_forward 1 707 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep3.CNhs12759.13185-141D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13185-141D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_ctss_fwd Tc:Mcf7ToHrg_01hr40minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_forward 0 707 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep3.CNhs12759.13185-141D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13185-141D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF503DIK K562 RBM39 narrowPeak Transcription Factor ChIP-seq Peaks of RBM39 in K562 from ENCODE 3 (ENCFF503DIK) 0 708 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RBM39 in K562 from ENCODE 3 (ENCFF503DIK)\ parent encTfChipPk off\ shortLabel K562 RBM39\ subGroups cellType=K562 factor=RBM39\ track encTfChipPkENCFF503DIK\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_tpm_rev Tc:Mcf7ToHrg_01hr40minBr3- bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_reverse 1 708 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep3.CNhs12759.13185-141D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13185-141D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_ctss_rev Tc:Mcf7ToHrg_01hr40minBr3- bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_reverse 0 708 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep3.CNhs12759.13185-141D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13185-141D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF968SUH K562 RCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of RCOR1 in K562 from ENCODE 3 (ENCFF968SUH) 0 709 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RCOR1 in K562 from ENCODE 3 (ENCFF968SUH)\ parent encTfChipPk off\ shortLabel K562 RCOR1\ subGroups cellType=K562 factor=RCOR1\ track encTfChipPkENCFF968SUH\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_tpm_fwd Tc:Mcf7ToHrg_02hr00minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_forward 1 709 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep1.CNhs12441.13054-139H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13054-139H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_ctss_fwd Tc:Mcf7ToHrg_02hr00minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_forward 0 709 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep1.CNhs12441.13054-139H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13054-139H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF290ESJ K562 REST 1 narrowPeak Transcription Factor ChIP-seq Peaks of REST in K562 from ENCODE 3 (ENCFF290ESJ) 0 710 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of REST in K562 from ENCODE 3 (ENCFF290ESJ)\ parent encTfChipPk off\ shortLabel K562 REST 1\ subGroups cellType=K562 factor=REST\ track encTfChipPkENCFF290ESJ\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_tpm_rev Tc:Mcf7ToHrg_02hr00minBr1- bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_reverse 1 710 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep1.CNhs12441.13054-139H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13054-139H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_ctss_rev Tc:Mcf7ToHrg_02hr00minBr1- bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_reverse 0 710 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep1.CNhs12441.13054-139H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13054-139H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF023ZUW K562 REST 2 narrowPeak Transcription Factor ChIP-seq Peaks of REST in K562 from ENCODE 3 (ENCFF023ZUW) 0 711 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of REST in K562 from ENCODE 3 (ENCFF023ZUW)\ parent encTfChipPk off\ shortLabel K562 REST 2\ subGroups cellType=K562 factor=REST\ track encTfChipPkENCFF023ZUW\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_tpm_fwd Tc:Mcf7ToHrg_02hr00minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_forward 1 711 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep2.CNhs12658.13120-140F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13120-140F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_ctss_fwd Tc:Mcf7ToHrg_02hr00minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_forward 0 711 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep2.CNhs12658.13120-140F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13120-140F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF905GXS K562 RFX1 1 narrowPeak Transcription Factor ChIP-seq Peaks of RFX1 in K562 from ENCODE 3 (ENCFF905GXS) 0 712 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RFX1 in K562 from ENCODE 3 (ENCFF905GXS)\ parent encTfChipPk off\ shortLabel K562 RFX1 1\ subGroups cellType=K562 factor=RFX1\ track encTfChipPkENCFF905GXS\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_tpm_rev Tc:Mcf7ToHrg_02hr00minBr2- bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_reverse 1 712 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep2.CNhs12658.13120-140F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13120-140F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_ctss_rev Tc:Mcf7ToHrg_02hr00minBr2- bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_reverse 0 712 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep2.CNhs12658.13120-140F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13120-140F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF193PVX K562 RFX1 2 narrowPeak Transcription Factor ChIP-seq Peaks of RFX1 in K562 from ENCODE 3 (ENCFF193PVX) 0 713 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RFX1 in K562 from ENCODE 3 (ENCFF193PVX)\ parent encTfChipPk off\ shortLabel K562 RFX1 2\ subGroups cellType=K562 factor=RFX1\ track encTfChipPkENCFF193PVX\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_tpm_fwd Tc:Mcf7ToHrg_02hr00minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_forward 1 713 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep3.CNhs12760.13186-141D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13186-141D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_ctss_fwd Tc:Mcf7ToHrg_02hr00minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_forward 0 713 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep3.CNhs12760.13186-141D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13186-141D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF201YKU K562 RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in K562 from ENCODE 3 (ENCFF201YKU) 0 714 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RFX5 in K562 from ENCODE 3 (ENCFF201YKU)\ parent encTfChipPk off\ shortLabel K562 RFX5\ subGroups cellType=K562 factor=RFX5\ track encTfChipPkENCFF201YKU\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_tpm_rev Tc:Mcf7ToHrg_02hr00minBr3- bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_reverse 1 714 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep3.CNhs12760.13186-141D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13186-141D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_ctss_rev Tc:Mcf7ToHrg_02hr00minBr3- bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_reverse 0 714 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep3.CNhs12760.13186-141D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13186-141D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF599CBB K562 RLF narrowPeak Transcription Factor ChIP-seq Peaks of RLF in K562 from ENCODE 3 (ENCFF599CBB) 0 715 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RLF in K562 from ENCODE 3 (ENCFF599CBB)\ parent encTfChipPk off\ shortLabel K562 RLF\ subGroups cellType=K562 factor=RLF\ track encTfChipPkENCFF599CBB\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_tpm_fwd Tc:Mcf7ToHrg_02hr30minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_forward 1 715 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep1.CNhs12442.13055-139H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13055-139H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_ctss_fwd Tc:Mcf7ToHrg_02hr30minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_forward 0 715 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep1.CNhs12442.13055-139H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13055-139H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF349MSP K562 RNF2 1 narrowPeak Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF349MSP) 0 716 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF349MSP)\ parent encTfChipPk off\ shortLabel K562 RNF2 1\ subGroups cellType=K562 factor=RNF2\ track encTfChipPkENCFF349MSP\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_tpm_rev Tc:Mcf7ToHrg_02hr30minBr1- bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_reverse 1 716 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep1.CNhs12442.13055-139H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13055-139H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_ctss_rev Tc:Mcf7ToHrg_02hr30minBr1- bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, 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color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF820LKT)\ parent encTfChipPk off\ shortLabel K562 RNF2 2\ subGroups cellType=K562 factor=RNF2\ track encTfChipPkENCFF820LKT\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_tpm_fwd Tc:Mcf7ToHrg_02hr30minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_forward 1 717 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep2.CNhs12659.13121-140F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13121-140F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_ctss_fwd Tc:Mcf7ToHrg_02hr30minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_forward 0 717 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep2.CNhs12659.13121-140F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13121-140F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF741CLJ K562 RNF2 3 narrowPeak Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF741CLJ) 0 718 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF741CLJ)\ parent encTfChipPk off\ shortLabel K562 RNF2 3\ subGroups cellType=K562 factor=RNF2\ track encTfChipPkENCFF741CLJ\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_tpm_rev Tc:Mcf7ToHrg_02hr30minBr2- bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_reverse 1 718 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7 regulation 0 bigDataUrl 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/gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep2.CNhs12659.13121-140F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13121-140F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF462AZY K562 RNF2 4 narrowPeak Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF462AZY) 0 719 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF462AZY)\ parent encTfChipPk off\ shortLabel K562 RNF2 4\ subGroups cellType=K562 factor=RNF2\ track encTfChipPkENCFF462AZY\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_tpm_fwd Tc:Mcf7ToHrg_02hr30minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_forward 1 719 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep3.CNhs12761.13187-141E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13187-141E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_tpm_fwd\ type bigWig\ url 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http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF545WXN K562 RUNX1 1 narrowPeak Transcription Factor ChIP-seq Peaks of RUNX1 in K562 from ENCODE 3 (ENCFF545WXN) 0 720 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RUNX1 in K562 from ENCODE 3 (ENCFF545WXN)\ parent encTfChipPk off\ shortLabel K562 RUNX1 1\ subGroups cellType=K562 factor=RUNX1\ track encTfChipPkENCFF545WXN\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_tpm_rev Tc:Mcf7ToHrg_02hr30minBr3- bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_reverse 1 720 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep3.CNhs12761.13187-141E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13187-141E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_ctss_rev Tc:Mcf7ToHrg_02hr30minBr3- bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_reverse 0 720 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep3.CNhs12761.13187-141E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13187-141E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF091MQJ K562 RUNX1 2 narrowPeak Transcription Factor ChIP-seq Peaks of RUNX1 in K562 from ENCODE 3 (ENCFF091MQJ) 0 721 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RUNX1 in K562 from ENCODE 3 (ENCFF091MQJ)\ parent encTfChipPk off\ shortLabel K562 RUNX1 2\ subGroups cellType=K562 factor=RUNX1\ track encTfChipPkENCFF091MQJ\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_tpm_fwd Tc:Mcf7ToHrg_03hr00minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_forward 1 721 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep1.CNhs12443.13056-139H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13056-139H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_ctss_fwd Tc:Mcf7ToHrg_03hr00minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_forward 0 721 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep1.CNhs12443.13056-139H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13056-139H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF411YVY K562 SAFB narrowPeak Transcription Factor ChIP-seq Peaks of SAFB in K562 from ENCODE 3 (ENCFF411YVY) 0 722 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SAFB in K562 from ENCODE 3 (ENCFF411YVY)\ parent encTfChipPk off\ shortLabel K562 SAFB\ subGroups cellType=K562 factor=SAFB\ track encTfChipPkENCFF411YVY\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_tpm_rev Tc:Mcf7ToHrg_03hr00minBr1- bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_reverse 1 722 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep1.CNhs12443.13056-139H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13056-139H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_ctss_rev Tc:Mcf7ToHrg_03hr00minBr1- bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_reverse 0 722 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep1.CNhs12443.13056-139H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13056-139H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF087DKT K562 SAFB2 narrowPeak Transcription Factor ChIP-seq Peaks of SAFB2 in K562 from ENCODE 3 (ENCFF087DKT) 0 723 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SAFB2 in K562 from ENCODE 3 (ENCFF087DKT)\ parent encTfChipPk off\ shortLabel K562 SAFB2\ subGroups cellType=K562 factor=SAFB2\ track encTfChipPkENCFF087DKT\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_tpm_fwd Tc:Mcf7ToHrg_03hr00minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_forward 1 723 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep2.CNhs12660.13122-140F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13122-140F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_ctss_fwd Tc:Mcf7ToHrg_03hr00minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_forward 0 723 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep2.CNhs12660.13122-140F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13122-140F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF103RHL K562 SAP30 narrowPeak Transcription Factor ChIP-seq Peaks of SAP30 in K562 from ENCODE 3 (ENCFF103RHL) 0 724 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SAP30 in K562 from ENCODE 3 (ENCFF103RHL)\ parent encTfChipPk off\ shortLabel K562 SAP30\ subGroups cellType=K562 factor=SAP30\ track encTfChipPkENCFF103RHL\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_tpm_rev Tc:Mcf7ToHrg_03hr00minBr2- bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_reverse 1 724 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep2.CNhs12660.13122-140F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13122-140F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_ctss_rev Tc:Mcf7ToHrg_03hr00minBr2- bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_reverse 0 724 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep2.CNhs12660.13122-140F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13122-140F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF690WNQ K562 SETDB1 narrowPeak Transcription Factor ChIP-seq Peaks of SETDB1 in K562 from ENCODE 3 (ENCFF690WNQ) 0 725 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SETDB1 in K562 from ENCODE 3 (ENCFF690WNQ)\ parent encTfChipPk off\ shortLabel K562 SETDB1\ subGroups cellType=K562 factor=SETDB1\ track encTfChipPkENCFF690WNQ\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_tpm_fwd Tc:Mcf7ToHrg_03hr00minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_forward 1 725 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep3.CNhs12762.13188-141E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13188-141E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_ctss_fwd Tc:Mcf7ToHrg_03hr00minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_forward 0 725 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep3.CNhs12762.13188-141E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13188-141E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF802JAN K562 SIN3A narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in K562 from ENCODE 3 (ENCFF802JAN) 0 726 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SIN3A in K562 from ENCODE 3 (ENCFF802JAN)\ parent encTfChipPk off\ shortLabel K562 SIN3A\ subGroups cellType=K562 factor=SIN3A\ track encTfChipPkENCFF802JAN\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_tpm_rev Tc:Mcf7ToHrg_03hr00minBr3- bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_reverse 1 726 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep3.CNhs12762.13188-141E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13188-141E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_ctss_rev Tc:Mcf7ToHrg_03hr00minBr3- bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_reverse 0 726 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep3.CNhs12762.13188-141E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13188-141E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF543INR K562 SIN3B narrowPeak Transcription Factor ChIP-seq Peaks of SIN3B in K562 from ENCODE 3 (ENCFF543INR) 0 727 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SIN3B in K562 from ENCODE 3 (ENCFF543INR)\ parent encTfChipPk off\ shortLabel K562 SIN3B\ subGroups cellType=K562 factor=SIN3B\ track encTfChipPkENCFF543INR\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_tpm_fwd Tc:Mcf7ToHrg_03hr30minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_forward 1 727 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep1.CNhs12444.13057-139H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13057-139H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_ctss_fwd Tc:Mcf7ToHrg_03hr30minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_forward 0 727 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep1.CNhs12444.13057-139H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13057-139H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF747XDN K562 SIRT6 narrowPeak Transcription Factor ChIP-seq Peaks of SIRT6 in K562 from ENCODE 3 (ENCFF747XDN) 0 728 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SIRT6 in K562 from ENCODE 3 (ENCFF747XDN)\ parent encTfChipPk off\ shortLabel K562 SIRT6\ subGroups cellType=K562 factor=SIRT6\ track encTfChipPkENCFF747XDN\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_tpm_rev Tc:Mcf7ToHrg_03hr30minBr1- bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_reverse 1 728 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep1.CNhs12444.13057-139H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13057-139H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_ctss_rev Tc:Mcf7ToHrg_03hr30minBr1- bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_reverse 0 728 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep1.CNhs12444.13057-139H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13057-139H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF247LOF K562 SIX5 narrowPeak Transcription Factor ChIP-seq Peaks of SIX5 in K562 from ENCODE 3 (ENCFF247LOF) 0 729 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SIX5 in K562 from ENCODE 3 (ENCFF247LOF)\ parent encTfChipPk off\ shortLabel K562 SIX5\ subGroups cellType=K562 factor=SIX5\ track encTfChipPkENCFF247LOF\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_tpm_fwd Tc:Mcf7ToHrg_03hr30minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_forward 1 729 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep2.CNhs12662.13123-140F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13123-140F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_ctss_fwd Tc:Mcf7ToHrg_03hr30minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_forward 0 729 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep2.CNhs12662.13123-140F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13123-140F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF254QDM K562 SKIL narrowPeak Transcription Factor ChIP-seq Peaks of SKIL in K562 from ENCODE 3 (ENCFF254QDM) 0 730 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SKIL in K562 from ENCODE 3 (ENCFF254QDM)\ parent encTfChipPk off\ shortLabel K562 SKIL\ subGroups cellType=K562 factor=SKIL\ track encTfChipPkENCFF254QDM\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_tpm_rev Tc:Mcf7ToHrg_03hr30minBr2- bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_reverse 1 730 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep2.CNhs12662.13123-140F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13123-140F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_ctss_rev Tc:Mcf7ToHrg_03hr30minBr2- bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_reverse 0 730 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep2.CNhs12662.13123-140F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13123-140F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF084BUP K562 SMAD1 narrowPeak Transcription Factor ChIP-seq Peaks of SMAD1 in K562 from ENCODE 3 (ENCFF084BUP) 0 731 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMAD1 in K562 from ENCODE 3 (ENCFF084BUP)\ parent encTfChipPk off\ shortLabel K562 SMAD1\ subGroups cellType=K562 factor=SMAD1\ track encTfChipPkENCFF084BUP\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_tpm_fwd Tc:Mcf7ToHrg_03hr30minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_forward 1 731 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep3.CNhs12763.13189-141E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13189-141E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_ctss_fwd Tc:Mcf7ToHrg_03hr30minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_forward 0 731 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep3.CNhs12763.13189-141E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13189-141E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF186MFI K562 SMAD2 narrowPeak Transcription Factor ChIP-seq Peaks of SMAD2 in K562 from ENCODE 3 (ENCFF186MFI) 0 732 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMAD2 in K562 from ENCODE 3 (ENCFF186MFI)\ parent encTfChipPk off\ shortLabel K562 SMAD2\ subGroups cellType=K562 factor=SMAD2\ track encTfChipPkENCFF186MFI\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_tpm_rev Tc:Mcf7ToHrg_03hr30minBr3- bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_reverse 1 732 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep3.CNhs12763.13189-141E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13189-141E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_ctss_rev Tc:Mcf7ToHrg_03hr30minBr3- bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_reverse 0 732 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep3.CNhs12763.13189-141E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13189-141E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF069AAY K562 SMAD5 narrowPeak Transcription Factor ChIP-seq Peaks of SMAD5 in K562 from ENCODE 3 (ENCFF069AAY) 0 733 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMAD5 in K562 from ENCODE 3 (ENCFF069AAY)\ parent encTfChipPk off\ shortLabel K562 SMAD5\ subGroups cellType=K562 factor=SMAD5\ track encTfChipPkENCFF069AAY\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_tpm_fwd Tc:Mcf7ToHrg_04hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_forward 1 733 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep1.CNhs12445.13058-139H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13058-139H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_04hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_ctss_fwd Tc:Mcf7ToHrg_04hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_forward 0 733 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep1.CNhs12445.13058-139H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13058-139H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_04hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF703NAE K562 SMARCA4 1 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA4 in K562 from ENCODE 3 (ENCFF703NAE) 0 734 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMARCA4 in K562 from ENCODE 3 (ENCFF703NAE)\ parent encTfChipPk off\ shortLabel K562 SMARCA4 1\ subGroups cellType=K562 factor=SMARCA4\ track encTfChipPkENCFF703NAE\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_tpm_rev Tc:Mcf7ToHrg_04hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_reverse 1 734 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep1.CNhs12445.13058-139H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13058-139H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_04hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_ctss_rev Tc:Mcf7ToHrg_04hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_reverse 0 734 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep1.CNhs12445.13058-139H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13058-139H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_04hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF868UOJ K562 SMARCA4 2 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA4 in K562 from ENCODE 3 (ENCFF868UOJ) 0 735 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMARCA4 in K562 from ENCODE 3 (ENCFF868UOJ)\ parent encTfChipPk off\ shortLabel K562 SMARCA4 2\ subGroups cellType=K562 factor=SMARCA4\ track encTfChipPkENCFF868UOJ\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_tpm_fwd Tc:Mcf7ToHrg_04hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_forward 1 735 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep2.CNhs12663.13124-140G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13124-140G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_04hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_ctss_fwd Tc:Mcf7ToHrg_04hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_forward 0 735 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep2.CNhs12663.13124-140G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13124-140G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_04hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF361RWX K562 SMARCA4 3 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA4 in K562 from ENCODE 3 (ENCFF361RWX) 0 736 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMARCA4 in K562 from ENCODE 3 (ENCFF361RWX)\ parent encTfChipPk off\ shortLabel K562 SMARCA4 3\ subGroups cellType=K562 factor=SMARCA4\ track encTfChipPkENCFF361RWX\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_tpm_rev Tc:Mcf7ToHrg_04hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_reverse 1 736 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep2.CNhs12663.13124-140G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13124-140G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_04hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_ctss_rev Tc:Mcf7ToHrg_04hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_reverse 0 736 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep2.CNhs12663.13124-140G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13124-140G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_04hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF481TNF K562 SMARCA5 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA5 in K562 from ENCODE 3 (ENCFF481TNF) 0 737 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMARCA5 in K562 from ENCODE 3 (ENCFF481TNF)\ parent encTfChipPk off\ shortLabel K562 SMARCA5\ subGroups cellType=K562 factor=SMARCA5\ track encTfChipPkENCFF481TNF\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_tpm_fwd Tc:Mcf7ToHrg_04hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_forward 1 737 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep3.CNhs12764.13190-141E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13190-141E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_04hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_ctss_fwd Tc:Mcf7ToHrg_04hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_forward 0 737 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep3.CNhs12764.13190-141E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13190-141E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_04hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF308QHX K562 SMARCB1 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCB1 in K562 from ENCODE 3 (ENCFF308QHX) 0 738 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMARCB1 in K562 from ENCODE 3 (ENCFF308QHX)\ parent encTfChipPk off\ shortLabel K562 SMARCB1\ subGroups cellType=K562 factor=SMARCB1\ track encTfChipPkENCFF308QHX\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_tpm_rev Tc:Mcf7ToHrg_04hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_reverse 1 738 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep3.CNhs12764.13190-141E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13190-141E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_04hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_ctss_rev Tc:Mcf7ToHrg_04hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_reverse 0 738 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep3.CNhs12764.13190-141E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13190-141E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_04hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF751ZVX K562 SMARCC2 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCC2 in K562 from ENCODE 3 (ENCFF751ZVX) 0 739 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMARCC2 in K562 from ENCODE 3 (ENCFF751ZVX)\ parent encTfChipPk off\ shortLabel K562 SMARCC2\ subGroups cellType=K562 factor=SMARCC2\ track encTfChipPkENCFF751ZVX\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_tpm_fwd Tc:Mcf7ToHrg_05hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_forward 1 739 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep1.CNhs12446.13059-139H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13059-139H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_05hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_ctss_fwd Tc:Mcf7ToHrg_05hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_forward 0 739 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep1.CNhs12446.13059-139H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13059-139H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_05hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF435SZS K562 SMARCE1 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCE1 in K562 from ENCODE 3 (ENCFF435SZS) 0 740 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMARCE1 in K562 from ENCODE 3 (ENCFF435SZS)\ parent encTfChipPk off\ shortLabel K562 SMARCE1\ subGroups cellType=K562 factor=SMARCE1\ track encTfChipPkENCFF435SZS\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_tpm_rev Tc:Mcf7ToHrg_05hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_reverse 1 740 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep1.CNhs12446.13059-139H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13059-139H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_05hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_ctss_rev Tc:Mcf7ToHrg_05hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_reverse 0 740 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep1.CNhs12446.13059-139H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13059-139H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_05hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF175UEE K562 SMC3 narrowPeak Transcription Factor ChIP-seq Peaks of SMC3 in K562 from ENCODE 3 (ENCFF175UEE) 0 741 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMC3 in K562 from ENCODE 3 (ENCFF175UEE)\ parent encTfChipPk off\ shortLabel K562 SMC3\ subGroups cellType=K562 factor=SMC3\ track encTfChipPkENCFF175UEE\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_tpm_fwd Tc:Mcf7ToHrg_05hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_forward 1 741 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep2.CNhs12664.13125-140G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13125-140G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_05hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_ctss_fwd Tc:Mcf7ToHrg_05hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_forward 0 741 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep2.CNhs12664.13125-140G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13125-140G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_05hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF206MJS K562 SNRNP70 narrowPeak Transcription Factor ChIP-seq Peaks of SNRNP70 in K562 from ENCODE 3 (ENCFF206MJS) 0 742 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SNRNP70 in K562 from ENCODE 3 (ENCFF206MJS)\ parent encTfChipPk off\ shortLabel K562 SNRNP70\ subGroups cellType=K562 factor=SNRNP70\ track encTfChipPkENCFF206MJS\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_tpm_rev Tc:Mcf7ToHrg_05hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_reverse 1 742 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep2.CNhs12664.13125-140G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13125-140G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_05hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_ctss_rev Tc:Mcf7ToHrg_05hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_reverse 0 742 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep2.CNhs12664.13125-140G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13125-140G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_05hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF431STY K562 SOX6 narrowPeak Transcription Factor ChIP-seq Peaks of SOX6 in K562 from ENCODE 3 (ENCFF431STY) 0 743 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SOX6 in K562 from ENCODE 3 (ENCFF431STY)\ parent encTfChipPk off\ shortLabel K562 SOX6\ subGroups cellType=K562 factor=SOX6\ track encTfChipPkENCFF431STY\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_tpm_fwd Tc:Mcf7ToHrg_05hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_forward 1 743 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep3.CNhs12765.13191-141E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13191-141E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_05hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_ctss_fwd Tc:Mcf7ToHrg_05hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_forward 0 743 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep3.CNhs12765.13191-141E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13191-141E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_05hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF452LDK K562 SP1 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in K562 from ENCODE 3 (ENCFF452LDK) 0 744 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SP1 in K562 from ENCODE 3 (ENCFF452LDK)\ parent encTfChipPk off\ shortLabel K562 SP1\ subGroups cellType=K562 factor=SP1\ track encTfChipPkENCFF452LDK\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_tpm_rev Tc:Mcf7ToHrg_05hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_reverse 1 744 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep3.CNhs12765.13191-141E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13191-141E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_05hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_ctss_rev Tc:Mcf7ToHrg_05hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_reverse 0 744 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep3.CNhs12765.13191-141E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13191-141E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_05hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF777MYW K562 SREBF1 narrowPeak Transcription Factor ChIP-seq Peaks of SREBF1 in K562 from ENCODE 3 (ENCFF777MYW) 0 745 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SREBF1 in K562 from ENCODE 3 (ENCFF777MYW)\ parent encTfChipPk off\ shortLabel K562 SREBF1\ subGroups cellType=K562 factor=SREBF1\ track encTfChipPkENCFF777MYW\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_tpm_fwd Tc:Mcf7ToHrg_06hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_forward 1 745 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep1.CNhs12447.13060-139H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13060-139H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_06hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_ctss_fwd Tc:Mcf7ToHrg_06hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_forward 0 745 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep1.CNhs12447.13060-139H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13060-139H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_06hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF550VUN K562 SRSF7 narrowPeak Transcription Factor ChIP-seq Peaks of SRSF7 in K562 from ENCODE 3 (ENCFF550VUN) 0 746 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SRSF7 in K562 from ENCODE 3 (ENCFF550VUN)\ parent encTfChipPk off\ shortLabel K562 SRSF7\ subGroups cellType=K562 factor=SRSF7\ track encTfChipPkENCFF550VUN\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_tpm_rev Tc:Mcf7ToHrg_06hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_reverse 1 746 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep1.CNhs12447.13060-139H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13060-139H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_06hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_ctss_rev Tc:Mcf7ToHrg_06hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_reverse 0 746 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep1.CNhs12447.13060-139H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13060-139H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_06hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF217HAW K562 SRSF9 narrowPeak Transcription Factor ChIP-seq Peaks of SRSF9 in K562 from ENCODE 3 (ENCFF217HAW) 0 747 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SRSF9 in K562 from ENCODE 3 (ENCFF217HAW)\ parent encTfChipPk off\ shortLabel K562 SRSF9\ subGroups cellType=K562 factor=SRSF9\ track encTfChipPkENCFF217HAW\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_tpm_fwd Tc:Mcf7ToHrg_06hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_forward 1 747 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep2.CNhs12665.13126-140G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13126-140G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_06hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_ctss_fwd Tc:Mcf7ToHrg_06hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_forward 0 747 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep2.CNhs12665.13126-140G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13126-140G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_06hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF646MXG K562 STAT1 1 narrowPeak Transcription Factor ChIP-seq Peaks of STAT1 in K562 from ENCODE 3 (ENCFF646MXG) 0 748 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of STAT1 in K562 from ENCODE 3 (ENCFF646MXG)\ parent encTfChipPk off\ shortLabel K562 STAT1 1\ subGroups cellType=K562 factor=STAT1\ track encTfChipPkENCFF646MXG\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_tpm_rev Tc:Mcf7ToHrg_06hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_reverse 1 748 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep2.CNhs12665.13126-140G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13126-140G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_06hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_ctss_rev Tc:Mcf7ToHrg_06hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_reverse 0 748 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep2.CNhs12665.13126-140G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13126-140G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_06hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF747ICD K562 STAT1 2 narrowPeak Transcription Factor ChIP-seq Peaks of STAT1 in K562 from ENCODE 3 (ENCFF747ICD) 0 749 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of STAT1 in K562 from ENCODE 3 (ENCFF747ICD)\ parent encTfChipPk off\ shortLabel K562 STAT1 2\ subGroups cellType=K562 factor=STAT1\ track encTfChipPkENCFF747ICD\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_tpm_fwd Tc:Mcf7ToHrg_06hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_forward 1 749 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep3.CNhs12766.13192-141E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13192-141E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_06hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_ctss_fwd Tc:Mcf7ToHrg_06hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_forward 0 749 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep3.CNhs12766.13192-141E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13192-141E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_06hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF431NLF K562 STAT1 3 narrowPeak Transcription Factor ChIP-seq Peaks of STAT1 in K562 from ENCODE 3 (ENCFF431NLF) 0 750 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of STAT1 in K562 from ENCODE 3 (ENCFF431NLF)\ parent encTfChipPk off\ shortLabel K562 STAT1 3\ subGroups cellType=K562 factor=STAT1\ track encTfChipPkENCFF431NLF\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_tpm_rev Tc:Mcf7ToHrg_06hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_reverse 1 750 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep3.CNhs12766.13192-141E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13192-141E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_06hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_ctss_rev Tc:Mcf7ToHrg_06hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_reverse 0 750 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep3.CNhs12766.13192-141E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13192-141E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_06hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF204VQS K562 STAT2 narrowPeak Transcription Factor ChIP-seq Peaks of STAT2 in K562 from ENCODE 3 (ENCFF204VQS) 0 751 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of STAT2 in K562 from ENCODE 3 (ENCFF204VQS)\ parent encTfChipPk off\ shortLabel K562 STAT2\ subGroups cellType=K562 factor=STAT2\ track encTfChipPkENCFF204VQS\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_tpm_fwd Tc:Mcf7ToHrg_07hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_forward 1 751 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep1.CNhs12448.13061-139I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13061-139I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_07hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_ctss_fwd Tc:Mcf7ToHrg_07hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_forward 0 751 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep1.CNhs12448.13061-139I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13061-139I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_07hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF517IXK K562 STAT5A narrowPeak Transcription Factor ChIP-seq Peaks of STAT5A in K562 from ENCODE 3 (ENCFF517IXK) 0 752 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of STAT5A in K562 from ENCODE 3 (ENCFF517IXK)\ parent encTfChipPk off\ shortLabel K562 STAT5A\ subGroups cellType=K562 factor=STAT5A\ track encTfChipPkENCFF517IXK\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_tpm_rev Tc:Mcf7ToHrg_07hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_reverse 1 752 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep1.CNhs12448.13061-139I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13061-139I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_07hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_ctss_rev Tc:Mcf7ToHrg_07hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_reverse 0 752 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep1.CNhs12448.13061-139I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13061-139I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_07hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF856HYC K562 SUZ12 narrowPeak Transcription Factor ChIP-seq Peaks of SUZ12 in K562 from ENCODE 3 (ENCFF856HYC) 0 753 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SUZ12 in K562 from ENCODE 3 (ENCFF856HYC)\ parent encTfChipPk off\ shortLabel K562 SUZ12\ subGroups cellType=K562 factor=SUZ12\ track encTfChipPkENCFF856HYC\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_tpm_fwd Tc:Mcf7ToHrg_07hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_forward 1 753 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep2.CNhs12666.13127-140G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13127-140G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_07hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_ctss_fwd Tc:Mcf7ToHrg_07hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_forward 0 753 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep2.CNhs12666.13127-140G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13127-140G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_07hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF710LLF K562 TAF15 narrowPeak Transcription Factor ChIP-seq Peaks of TAF15 in K562 from ENCODE 3 (ENCFF710LLF) 0 754 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TAF15 in K562 from ENCODE 3 (ENCFF710LLF)\ parent encTfChipPk off\ shortLabel K562 TAF15\ subGroups cellType=K562 factor=TAF15\ track encTfChipPkENCFF710LLF\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_tpm_rev Tc:Mcf7ToHrg_07hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_reverse 1 754 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep2.CNhs12666.13127-140G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13127-140G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_07hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_ctss_rev Tc:Mcf7ToHrg_07hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_reverse 0 754 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep2.CNhs12666.13127-140G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13127-140G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_07hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF852NOL K562 TAF7 narrowPeak Transcription Factor ChIP-seq Peaks of TAF7 in K562 from ENCODE 3 (ENCFF852NOL) 0 755 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TAF7 in K562 from ENCODE 3 (ENCFF852NOL)\ parent encTfChipPk off\ shortLabel K562 TAF7\ subGroups cellType=K562 factor=TAF7\ track encTfChipPkENCFF852NOL\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_tpm_fwd Tc:Mcf7ToHrg_07hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_forward 1 755 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep3.CNhs12767.13193-141E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13193-141E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_07hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_ctss_fwd Tc:Mcf7ToHrg_07hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_forward 0 755 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep3.CNhs12767.13193-141E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13193-141E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_07hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF223HDM K562 TAF9B narrowPeak Transcription Factor ChIP-seq Peaks of TAF9B in K562 from ENCODE 3 (ENCFF223HDM) 0 756 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TAF9B in K562 from ENCODE 3 (ENCFF223HDM)\ parent encTfChipPk off\ shortLabel K562 TAF9B\ subGroups cellType=K562 factor=TAF9B\ track encTfChipPkENCFF223HDM\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_tpm_rev Tc:Mcf7ToHrg_07hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_reverse 1 756 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep3.CNhs12767.13193-141E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13193-141E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_07hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_ctss_rev Tc:Mcf7ToHrg_07hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_reverse 0 756 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep3.CNhs12767.13193-141E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13193-141E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_07hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF078OUD K562 TAL1 1 narrowPeak Transcription Factor ChIP-seq Peaks of TAL1 in K562 from ENCODE 3 (ENCFF078OUD) 0 757 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TAL1 in K562 from ENCODE 3 (ENCFF078OUD)\ parent encTfChipPk off\ shortLabel K562 TAL1 1\ subGroups cellType=K562 factor=TAL1\ track encTfChipPkENCFF078OUD\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_tpm_fwd Tc:Mcf7ToHrg_08hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_forward 1 757 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep1.CNhs12740.13062-139I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13062-139I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_08hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_ctss_fwd Tc:Mcf7ToHrg_08hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_forward 0 757 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep1.CNhs12740.13062-139I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13062-139I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_08hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF475LFH K562 TAL1 2 narrowPeak Transcription Factor ChIP-seq Peaks of TAL1 in K562 from ENCODE 3 (ENCFF475LFH) 0 758 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TAL1 in K562 from ENCODE 3 (ENCFF475LFH)\ parent encTfChipPk off\ shortLabel K562 TAL1 2\ subGroups cellType=K562 factor=TAL1\ track encTfChipPkENCFF475LFH\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_tpm_rev Tc:Mcf7ToHrg_08hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_reverse 1 758 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep1.CNhs12740.13062-139I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13062-139I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_08hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_ctss_rev Tc:Mcf7ToHrg_08hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_reverse 0 758 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep1.CNhs12740.13062-139I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13062-139I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_08hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF868SWL K562 TBL1XR1 1 narrowPeak Transcription Factor ChIP-seq Peaks of TBL1XR1 in K562 from ENCODE 3 (ENCFF868SWL) 0 759 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TBL1XR1 in K562 from ENCODE 3 (ENCFF868SWL)\ parent encTfChipPk off\ shortLabel K562 TBL1XR1 1\ subGroups cellType=K562 factor=TBL1XR1\ track encTfChipPkENCFF868SWL\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_tpm_fwd Tc:Mcf7ToHrg_08hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_forward 1 759 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep2.CNhs12667.13128-140G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13128-140G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_08hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_ctss_fwd Tc:Mcf7ToHrg_08hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_forward 0 759 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep2.CNhs12667.13128-140G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13128-140G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_08hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF239WFN K562 TBL1XR1 2 narrowPeak Transcription Factor ChIP-seq Peaks of TBL1XR1 in K562 from ENCODE 3 (ENCFF239WFN) 0 760 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TBL1XR1 in K562 from ENCODE 3 (ENCFF239WFN)\ parent encTfChipPk off\ shortLabel K562 TBL1XR1 2\ subGroups cellType=K562 factor=TBL1XR1\ track encTfChipPkENCFF239WFN\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_tpm_rev Tc:Mcf7ToHrg_08hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_reverse 1 760 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep2.CNhs12667.13128-140G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13128-140G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_08hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_ctss_rev Tc:Mcf7ToHrg_08hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_reverse 0 760 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep2.CNhs12667.13128-140G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13128-140G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_08hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF370YGS K562 TBP narrowPeak Transcription Factor ChIP-seq Peaks of TBP in K562 from ENCODE 3 (ENCFF370YGS) 0 761 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TBP in K562 from ENCODE 3 (ENCFF370YGS)\ parent encTfChipPk off\ shortLabel K562 TBP\ subGroups cellType=K562 factor=TBP\ track encTfChipPkENCFF370YGS\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_tpm_fwd Tc:Mcf7ToHrg_08hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_forward 1 761 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep3.CNhs12768.13194-141E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13194-141E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_08hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_ctss_fwd Tc:Mcf7ToHrg_08hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_forward 0 761 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep3.CNhs12768.13194-141E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13194-141E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_08hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF952JIK K562 TCF12 1 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in K562 from ENCODE 3 (ENCFF952JIK) 0 762 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in K562 from ENCODE 3 (ENCFF952JIK)\ parent encTfChipPk off\ shortLabel K562 TCF12 1\ subGroups cellType=K562 factor=TCF12\ track encTfChipPkENCFF952JIK\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_tpm_rev Tc:Mcf7ToHrg_08hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_reverse 1 762 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep3.CNhs12768.13194-141E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13194-141E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_08hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_ctss_rev Tc:Mcf7ToHrg_08hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_reverse 0 762 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep3.CNhs12768.13194-141E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13194-141E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_08hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF912LXU K562 TCF12 2 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in K562 from ENCODE 3 (ENCFF912LXU) 0 763 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in K562 from ENCODE 3 (ENCFF912LXU)\ parent encTfChipPk off\ shortLabel K562 TCF12 2\ subGroups cellType=K562 factor=TCF12\ track encTfChipPkENCFF912LXU\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_tpm_fwd MscAdipogenicInduction_00hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_forward 1 763 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep1.CNhs13337.13229-141I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13229-141I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_ctss_fwd MscAdipogenicInduction_00hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_forward 0 763 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep1.CNhs13337.13229-141I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13229-141I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF512IAI K562 TCF7 narrowPeak Transcription Factor ChIP-seq Peaks of TCF7 in K562 from ENCODE 3 (ENCFF512IAI) 0 764 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TCF7 in K562 from ENCODE 3 (ENCFF512IAI)\ parent encTfChipPk off\ shortLabel K562 TCF7\ subGroups cellType=K562 factor=TCF7\ track encTfChipPkENCFF512IAI\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_tpm_rev MscAdipogenicInduction_00hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_reverse 1 764 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep1.CNhs13337.13229-141I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13229-141I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_ctss_rev MscAdipogenicInduction_00hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_reverse 0 764 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep1.CNhs13337.13229-141I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13229-141I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF547MLB K562 TEAD4 narrowPeak Transcription Factor ChIP-seq Peaks of TEAD4 in K562 from ENCODE 3 (ENCFF547MLB) 0 765 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TEAD4 in K562 from ENCODE 3 (ENCFF547MLB)\ parent encTfChipPk off\ shortLabel K562 TEAD4\ subGroups cellType=K562 factor=TEAD4\ track encTfChipPkENCFF547MLB\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_tpm_fwd MscAdipogenicInduction_00hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_forward 1 765 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep2.CNhs13420.13230-141I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13230-141I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_ctss_fwd MscAdipogenicInduction_00hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_forward 0 765 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep2.CNhs13420.13230-141I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13230-141I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF130TPD K562 THAP1 narrowPeak Transcription Factor ChIP-seq Peaks of THAP1 in K562 from ENCODE 3 (ENCFF130TPD) 0 766 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of THAP1 in K562 from ENCODE 3 (ENCFF130TPD)\ parent encTfChipPk off\ shortLabel K562 THAP1\ subGroups cellType=K562 factor=THAP1\ track encTfChipPkENCFF130TPD\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_tpm_rev MscAdipogenicInduction_00hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_reverse 1 766 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep2.CNhs13420.13230-141I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13230-141I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_ctss_rev MscAdipogenicInduction_00hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_reverse 0 766 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep2.CNhs13420.13230-141I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13230-141I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF309DMZ K562 THRA narrowPeak Transcription Factor ChIP-seq Peaks of THRA in K562 from ENCODE 3 (ENCFF309DMZ) 0 767 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of THRA in K562 from ENCODE 3 (ENCFF309DMZ)\ parent encTfChipPk off\ shortLabel K562 THRA\ subGroups cellType=K562 factor=THRA\ track encTfChipPkENCFF309DMZ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_tpm_fwd MscAdipogenicInduction_00hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_forward 1 767 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep3.CNhs13421.13231-141I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13231-141I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_ctss_fwd MscAdipogenicInduction_00hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_forward 0 767 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep3.CNhs13421.13231-141I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13231-141I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF063NXI K562 TRIM24 1 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM24 in K562 from ENCODE 3 (ENCFF063NXI) 0 768 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TRIM24 in K562 from ENCODE 3 (ENCFF063NXI)\ parent encTfChipPk off\ shortLabel K562 TRIM24 1\ subGroups cellType=K562 factor=TRIM24\ track encTfChipPkENCFF063NXI\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_tpm_rev MscAdipogenicInduction_00hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_reverse 1 768 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep3.CNhs13421.13231-141I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13231-141I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_ctss_rev MscAdipogenicInduction_00hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_reverse 0 768 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep3.CNhs13421.13231-141I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13231-141I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF950TOJ K562 TRIM24 2 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM24 in K562 from ENCODE 3 (ENCFF950TOJ) 0 769 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TRIM24 in K562 from ENCODE 3 (ENCFF950TOJ)\ parent encTfChipPk off\ shortLabel K562 TRIM24 2\ subGroups cellType=K562 factor=TRIM24\ track encTfChipPkENCFF950TOJ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_tpm_fwd MscAdipogenicInduction_00hr15minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_forward 1 769 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep1.CNhs13422.13232-142A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13232-142A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_ctss_fwd MscAdipogenicInduction_00hr15minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_forward 0 769 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep1.CNhs13422.13232-142A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13232-142A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF168KHS K562 TRIM28 1 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM28 in K562 from ENCODE 3 (ENCFF168KHS) 0 770 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TRIM28 in K562 from ENCODE 3 (ENCFF168KHS)\ parent encTfChipPk off\ shortLabel K562 TRIM28 1\ subGroups cellType=K562 factor=TRIM28\ track encTfChipPkENCFF168KHS\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_tpm_rev MscAdipogenicInduction_00hr15minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_reverse 1 770 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep1.CNhs13422.13232-142A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13232-142A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_ctss_rev MscAdipogenicInduction_00hr15minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_reverse 0 770 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep1.CNhs13422.13232-142A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13232-142A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF996AMX K562 TRIM28 2 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM28 in K562 from ENCODE 3 (ENCFF996AMX) 0 771 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TRIM28 in K562 from ENCODE 3 (ENCFF996AMX)\ parent encTfChipPk off\ shortLabel K562 TRIM28 2\ subGroups cellType=K562 factor=TRIM28\ track encTfChipPkENCFF996AMX\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_tpm_fwd MscAdipogenicInduction_00hr15minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_forward 1 771 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep2.CNhs13423.13233-142A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13233-142A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_ctss_fwd MscAdipogenicInduction_00hr15minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_forward 0 771 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep2.CNhs13423.13233-142A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13233-142A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF623ELO K562 TRIM28 3 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM28 in K562 from ENCODE 3 (ENCFF623ELO) 0 772 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TRIM28 in K562 from ENCODE 3 (ENCFF623ELO)\ parent encTfChipPk off\ shortLabel K562 TRIM28 3\ subGroups cellType=K562 factor=TRIM28\ track encTfChipPkENCFF623ELO\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_tpm_rev MscAdipogenicInduction_00hr15minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_reverse 1 772 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep2.CNhs13423.13233-142A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13233-142A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_ctss_rev MscAdipogenicInduction_00hr15minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_reverse 0 772 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep2.CNhs13423.13233-142A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13233-142A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF534VQL K562 TRIP13 narrowPeak Transcription Factor ChIP-seq Peaks of TRIP13 in K562 from ENCODE 3 (ENCFF534VQL) 0 773 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TRIP13 in K562 from ENCODE 3 (ENCFF534VQL)\ parent encTfChipPk off\ shortLabel K562 TRIP13\ subGroups cellType=K562 factor=TRIP13\ track encTfChipPkENCFF534VQL\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_tpm_fwd MscAdipogenicInduction_00hr15minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_forward 1 773 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep3.CNhs13424.13234-142A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13234-142A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_ctss_fwd MscAdipogenicInduction_00hr15minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_forward 0 773 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep3.CNhs13424.13234-142A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13234-142A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF482DRO K562 U2AF1 narrowPeak Transcription Factor ChIP-seq Peaks of U2AF1 in K562 from ENCODE 3 (ENCFF482DRO) 0 774 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of U2AF1 in K562 from ENCODE 3 (ENCFF482DRO)\ parent encTfChipPk off\ shortLabel K562 U2AF1\ subGroups cellType=K562 factor=U2AF1\ track encTfChipPkENCFF482DRO\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_tpm_rev MscAdipogenicInduction_00hr15minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_reverse 1 774 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep3.CNhs13424.13234-142A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13234-142A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_ctss_rev MscAdipogenicInduction_00hr15minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_reverse 0 774 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep3.CNhs13424.13234-142A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13234-142A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF134HBP K562 U2AF2 narrowPeak Transcription Factor ChIP-seq Peaks of U2AF2 in K562 from ENCODE 3 (ENCFF134HBP) 0 775 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of U2AF2 in K562 from ENCODE 3 (ENCFF134HBP)\ parent encTfChipPk off\ shortLabel K562 U2AF2\ subGroups cellType=K562 factor=U2AF2\ track encTfChipPkENCFF134HBP\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_tpm_fwd MscAdipogenicInduction_00hr30minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_forward 1 775 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep1.CNhs13425.13235-142A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13235-142A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_ctss_fwd MscAdipogenicInduction_00hr30minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_forward 0 775 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep1.CNhs13425.13235-142A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13235-142A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF345RRM K562 UBTF 1 narrowPeak Transcription Factor ChIP-seq Peaks of UBTF in K562 from ENCODE 3 (ENCFF345RRM) 0 776 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of UBTF in K562 from ENCODE 3 (ENCFF345RRM)\ parent encTfChipPk off\ shortLabel K562 UBTF 1\ subGroups cellType=K562 factor=UBTF\ track encTfChipPkENCFF345RRM\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_tpm_rev MscAdipogenicInduction_00hr30minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_reverse 1 776 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep1.CNhs13425.13235-142A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13235-142A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_ctss_rev MscAdipogenicInduction_00hr30minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_reverse 0 776 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep1.CNhs13425.13235-142A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13235-142A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF403TAF K562 UBTF 2 narrowPeak Transcription Factor ChIP-seq Peaks of UBTF in K562 from ENCODE 3 (ENCFF403TAF) 0 777 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of UBTF in K562 from ENCODE 3 (ENCFF403TAF)\ parent encTfChipPk off\ shortLabel K562 UBTF 2\ subGroups cellType=K562 factor=UBTF\ track encTfChipPkENCFF403TAF\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_tpm_fwd MscAdipogenicInduction_00hr30minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_forward 1 777 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep2.CNhs13426.13236-142A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13236-142A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_ctss_fwd MscAdipogenicInduction_00hr30minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_forward 0 777 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep2.CNhs13426.13236-142A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13236-142A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF425FVY K562 USF2 narrowPeak Transcription Factor ChIP-seq Peaks of USF2 in K562 from ENCODE 3 (ENCFF425FVY) 0 778 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of USF2 in K562 from ENCODE 3 (ENCFF425FVY)\ parent encTfChipPk off\ shortLabel K562 USF2\ subGroups cellType=K562 factor=USF2\ track encTfChipPkENCFF425FVY\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_tpm_rev MscAdipogenicInduction_00hr30minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_reverse 1 778 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep2.CNhs13426.13236-142A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13236-142A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_ctss_rev MscAdipogenicInduction_00hr30minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_reverse 0 778 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep2.CNhs13426.13236-142A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13236-142A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF157ZQI K562 WHSC1 narrowPeak Transcription Factor ChIP-seq Peaks of WHSC1 in K562 from ENCODE 3 (ENCFF157ZQI) 0 779 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of WHSC1 in K562 from ENCODE 3 (ENCFF157ZQI)\ parent encTfChipPk off\ shortLabel K562 WHSC1\ subGroups cellType=K562 factor=WHSC1\ track encTfChipPkENCFF157ZQI\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_tpm_fwd MscAdipogenicInduction_00hr45minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_forward 1 779 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep1.CNhs13428.13238-142A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13238-142A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_ctss_fwd MscAdipogenicInduction_00hr45minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_forward 0 779 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep1.CNhs13428.13238-142A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13238-142A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF115PGE K562 XRCC3 narrowPeak Transcription Factor ChIP-seq Peaks of XRCC3 in K562 from ENCODE 3 (ENCFF115PGE) 0 780 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of XRCC3 in K562 from ENCODE 3 (ENCFF115PGE)\ parent encTfChipPk off\ shortLabel K562 XRCC3\ subGroups cellType=K562 factor=XRCC3\ track encTfChipPkENCFF115PGE\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_tpm_rev MscAdipogenicInduction_00hr45minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_reverse 1 780 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep1.CNhs13428.13238-142A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13238-142A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_ctss_rev MscAdipogenicInduction_00hr45minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_reverse 0 780 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep1.CNhs13428.13238-142A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13238-142A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF929TWP K562 XRCC5 narrowPeak Transcription Factor ChIP-seq Peaks of XRCC5 in K562 from ENCODE 3 (ENCFF929TWP) 0 781 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of XRCC5 in K562 from ENCODE 3 (ENCFF929TWP)\ parent encTfChipPk off\ shortLabel K562 XRCC5\ subGroups cellType=K562 factor=XRCC5\ track encTfChipPkENCFF929TWP\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_tpm_fwd MscAdipogenicInduction_00hr45minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_forward 1 781 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep2.CNhs13429.13239-142A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13239-142A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_ctss_fwd MscAdipogenicInduction_00hr45minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_forward 0 781 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep2.CNhs13429.13239-142A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13239-142A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF024TJO K562 YY1 1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in K562 from ENCODE 3 (ENCFF024TJO) 0 782 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in K562 from ENCODE 3 (ENCFF024TJO)\ parent encTfChipPk off\ shortLabel K562 YY1 1\ subGroups cellType=K562 factor=YY1\ track encTfChipPkENCFF024TJO\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_tpm_rev MscAdipogenicInduction_00hr45minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_reverse 1 782 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep2.CNhs13429.13239-142A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13239-142A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_ctss_rev MscAdipogenicInduction_00hr45minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_reverse 0 782 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep2.CNhs13429.13239-142A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13239-142A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF635XCI K562 YY1 2 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in K562 from ENCODE 3 (ENCFF635XCI) 0 783 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in K562 from ENCODE 3 (ENCFF635XCI)\ parent encTfChipPk off\ shortLabel K562 YY1 2\ subGroups cellType=K562 factor=YY1\ track encTfChipPkENCFF635XCI\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_tpm_fwd MscAdipogenicInduction_00hr45minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_forward 1 783 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep3.CNhs13430.13240-142A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13240-142A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_ctss_fwd MscAdipogenicInduction_00hr45minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_forward 0 783 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep3.CNhs13430.13240-142A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13240-142A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF388TYU K562 ZBED1 narrowPeak Transcription Factor ChIP-seq Peaks of ZBED1 in K562 from ENCODE 3 (ENCFF388TYU) 0 784 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZBED1 in K562 from ENCODE 3 (ENCFF388TYU)\ parent encTfChipPk off\ shortLabel K562 ZBED1\ subGroups cellType=K562 factor=ZBED1\ track encTfChipPkENCFF388TYU\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_tpm_rev MscAdipogenicInduction_00hr45minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_reverse 1 784 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep3.CNhs13430.13240-142A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13240-142A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_ctss_rev MscAdipogenicInduction_00hr45minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_reverse 0 784 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep3.CNhs13430.13240-142A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13240-142A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF913HCQ K562 ZBTB11 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB11 in K562 from ENCODE 3 (ENCFF913HCQ) 0 785 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB11 in K562 from ENCODE 3 (ENCFF913HCQ)\ parent encTfChipPk off\ shortLabel K562 ZBTB11\ subGroups cellType=K562 factor=ZBTB11\ track encTfChipPkENCFF913HCQ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_tpm_fwd MscAdipogenicInduction_01hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_forward 1 785 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep1.CNhs13431.13241-142B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13241-142B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_ctss_fwd MscAdipogenicInduction_01hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_forward 0 785 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep1.CNhs13431.13241-142B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13241-142B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF189WAO K562 ZBTB2 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB2 in K562 from ENCODE 3 (ENCFF189WAO) 0 786 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB2 in K562 from ENCODE 3 (ENCFF189WAO)\ parent encTfChipPk off\ shortLabel K562 ZBTB2\ subGroups cellType=K562 factor=ZBTB2\ track encTfChipPkENCFF189WAO\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_tpm_rev MscAdipogenicInduction_01hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_reverse 1 786 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep1.CNhs13431.13241-142B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13241-142B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_ctss_rev MscAdipogenicInduction_01hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_reverse 0 786 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep1.CNhs13431.13241-142B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13241-142B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF556STK K562 ZBTB33 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in K562 from ENCODE 3 (ENCFF556STK) 0 787 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in K562 from ENCODE 3 (ENCFF556STK)\ parent encTfChipPk off\ shortLabel K562 ZBTB33\ subGroups cellType=K562 factor=ZBTB33\ track encTfChipPkENCFF556STK\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_tpm_fwd MscAdipogenicInduction_01hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_forward 1 787 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep2.CNhs13432.13242-142B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13242-142B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_ctss_fwd MscAdipogenicInduction_01hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_forward 0 787 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep2.CNhs13432.13242-142B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13242-142B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF088LZZ K562 ZBTB40 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB40 in K562 from ENCODE 3 (ENCFF088LZZ) 0 788 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB40 in K562 from ENCODE 3 (ENCFF088LZZ)\ parent encTfChipPk off\ shortLabel K562 ZBTB40\ subGroups cellType=K562 factor=ZBTB40\ track encTfChipPkENCFF088LZZ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_tpm_rev MscAdipogenicInduction_01hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_reverse 1 788 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep2.CNhs13432.13242-142B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13242-142B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_ctss_rev MscAdipogenicInduction_01hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_reverse 0 788 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep2.CNhs13432.13242-142B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13242-142B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF014KUI K562 ZBTB5 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB5 in K562 from ENCODE 3 (ENCFF014KUI) 0 789 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB5 in K562 from ENCODE 3 (ENCFF014KUI)\ parent encTfChipPk off\ shortLabel K562 ZBTB5 1\ subGroups cellType=K562 factor=ZBTB5\ track encTfChipPkENCFF014KUI\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_tpm_fwd MscAdipogenicInduction_01hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_forward 1 789 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep3.CNhs13433.13243-142B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13243-142B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_ctss_fwd MscAdipogenicInduction_01hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_forward 0 789 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep3.CNhs13433.13243-142B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13243-142B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF813GMP K562 ZBTB5 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB5 in K562 from ENCODE 3 (ENCFF813GMP) 0 790 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB5 in K562 from ENCODE 3 (ENCFF813GMP)\ parent encTfChipPk off\ shortLabel K562 ZBTB5 2\ subGroups cellType=K562 factor=ZBTB5\ track encTfChipPkENCFF813GMP\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_tpm_rev MscAdipogenicInduction_01hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_reverse 1 790 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep3.CNhs13433.13243-142B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13243-142B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_ctss_rev MscAdipogenicInduction_01hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_reverse 0 790 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep3.CNhs13433.13243-142B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13243-142B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF245LRG K562 ZBTB7A narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB7A in K562 from ENCODE 3 (ENCFF245LRG) 0 791 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB7A in K562 from ENCODE 3 (ENCFF245LRG)\ parent encTfChipPk off\ shortLabel K562 ZBTB7A\ subGroups cellType=K562 factor=ZBTB7A\ track encTfChipPkENCFF245LRG\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_tpm_fwd MscAdipogenicInduction_01hr40minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_forward 1 791 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep1.CNhs13600.13247-142B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13247-142B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_ctss_fwd MscAdipogenicInduction_01hr40minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_forward 0 791 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep1.CNhs13600.13247-142B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13247-142B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF328SSL K562 ZBTB8A narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB8A in K562 from ENCODE 3 (ENCFF328SSL) 0 792 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB8A in K562 from ENCODE 3 (ENCFF328SSL)\ parent encTfChipPk off\ shortLabel K562 ZBTB8A\ subGroups cellType=K562 factor=ZBTB8A\ track encTfChipPkENCFF328SSL\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_tpm_rev MscAdipogenicInduction_01hr40minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_reverse 1 792 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep1.CNhs13600.13247-142B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13247-142B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_ctss_rev MscAdipogenicInduction_01hr40minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_reverse 0 792 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep1.CNhs13600.13247-142B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13247-142B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF808NWU K562 ZEB2 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZEB2 in K562 from ENCODE 3 (ENCFF808NWU) 0 793 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZEB2 in K562 from ENCODE 3 (ENCFF808NWU)\ parent encTfChipPk off\ shortLabel K562 ZEB2 1\ subGroups cellType=K562 factor=ZEB2\ track encTfChipPkENCFF808NWU\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_tpm_fwd MscAdipogenicInduction_01hr40minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_forward 1 793 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep2.CNhs13601.13248-142B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13248-142B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_ctss_fwd MscAdipogenicInduction_01hr40minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_forward 0 793 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep2.CNhs13601.13248-142B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13248-142B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF553KIK K562 ZEB2 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZEB2 in K562 from ENCODE 3 (ENCFF553KIK) 0 794 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZEB2 in K562 from ENCODE 3 (ENCFF553KIK)\ parent encTfChipPk off\ shortLabel K562 ZEB2 2\ subGroups cellType=K562 factor=ZEB2\ track encTfChipPkENCFF553KIK\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_tpm_rev MscAdipogenicInduction_01hr40minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_reverse 1 794 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep2.CNhs13601.13248-142B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13248-142B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_ctss_rev MscAdipogenicInduction_01hr40minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_reverse 0 794 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep2.CNhs13601.13248-142B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13248-142B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF150ZBH K562 ZFP91 narrowPeak Transcription Factor ChIP-seq Peaks of ZFP91 in K562 from ENCODE 3 (ENCFF150ZBH) 0 795 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZFP91 in K562 from ENCODE 3 (ENCFF150ZBH)\ parent encTfChipPk off\ shortLabel K562 ZFP91\ subGroups cellType=K562 factor=ZFP91\ track encTfChipPkENCFF150ZBH\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_tpm_fwd MscAdipogenicInduction_01hr40minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_forward 1 795 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep3.CNhs13602.13249-142B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13249-142B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_ctss_fwd MscAdipogenicInduction_01hr40minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_forward 0 795 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep3.CNhs13602.13249-142B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13249-142B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF495BPY K562 ZHX1 narrowPeak Transcription Factor ChIP-seq Peaks of ZHX1 in K562 from ENCODE 3 (ENCFF495BPY) 0 796 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZHX1 in K562 from ENCODE 3 (ENCFF495BPY)\ parent encTfChipPk off\ shortLabel K562 ZHX1\ subGroups cellType=K562 factor=ZHX1\ track encTfChipPkENCFF495BPY\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_tpm_rev MscAdipogenicInduction_01hr40minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_reverse 1 796 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep3.CNhs13602.13249-142B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13249-142B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_ctss_rev MscAdipogenicInduction_01hr40minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_reverse 0 796 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep3.CNhs13602.13249-142B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13249-142B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF704VDI K562 ZKSCAN1 narrowPeak Transcription Factor ChIP-seq Peaks of ZKSCAN1 in K562 from ENCODE 3 (ENCFF704VDI) 0 797 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZKSCAN1 in K562 from ENCODE 3 (ENCFF704VDI)\ parent encTfChipPk off\ shortLabel K562 ZKSCAN1\ subGroups cellType=K562 factor=ZKSCAN1\ track encTfChipPkENCFF704VDI\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_tpm_fwd MscAdipogenicInduction_02hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_forward 1 797 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep1.CNhs13603.13250-142C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13250-142C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_ctss_fwd MscAdipogenicInduction_02hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_forward 0 797 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep1.CNhs13603.13250-142C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13250-142C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF526PMI K562 ZMIZ1 narrowPeak Transcription Factor ChIP-seq Peaks of ZMIZ1 in K562 from ENCODE 3 (ENCFF526PMI) 0 798 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZMIZ1 in K562 from ENCODE 3 (ENCFF526PMI)\ parent encTfChipPk off\ shortLabel K562 ZMIZ1\ subGroups cellType=K562 factor=ZMIZ1\ track encTfChipPkENCFF526PMI\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_tpm_rev MscAdipogenicInduction_02hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_reverse 1 798 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep1.CNhs13603.13250-142C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13250-142C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_ctss_rev MscAdipogenicInduction_02hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_reverse 0 798 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep1.CNhs13603.13250-142C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13250-142C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF195IFB K562 ZMYM3 narrowPeak Transcription Factor ChIP-seq Peaks of ZMYM3 in K562 from ENCODE 3 (ENCFF195IFB) 0 799 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZMYM3 in K562 from ENCODE 3 (ENCFF195IFB)\ parent encTfChipPk off\ shortLabel K562 ZMYM3\ subGroups cellType=K562 factor=ZMYM3\ track encTfChipPkENCFF195IFB\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_tpm_fwd MscAdipogenicInduction_02hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_forward 1 799 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep2.CNhs13604.13251-142C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13251-142C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_ctss_fwd MscAdipogenicInduction_02hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_forward 0 799 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep2.CNhs13604.13251-142C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13251-142C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF700GZI K562 ZNF143 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF143 in K562 from ENCODE 3 (ENCFF700GZI) 0 800 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF143 in K562 from ENCODE 3 (ENCFF700GZI)\ parent encTfChipPk off\ shortLabel K562 ZNF143\ subGroups cellType=K562 factor=ZNF143\ track encTfChipPkENCFF700GZI\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_tpm_rev MscAdipogenicInduction_02hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_reverse 1 800 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep2.CNhs13604.13251-142C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13251-142C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_ctss_rev MscAdipogenicInduction_02hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_reverse 0 800 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep2.CNhs13604.13251-142C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13251-142C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF855CUN K562 ZNF184 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF184 in K562 from ENCODE 3 (ENCFF855CUN) 0 801 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF184 in K562 from ENCODE 3 (ENCFF855CUN)\ parent encTfChipPk off\ shortLabel K562 ZNF184 1\ subGroups cellType=K562 factor=ZNF184\ track encTfChipPkENCFF855CUN\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_tpm_fwd MscAdipogenicInduction_02hr30minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_forward 1 801 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep1.CNhs13606.13253-142C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13253-142C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_ctss_fwd MscAdipogenicInduction_02hr30minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_forward 0 801 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep1.CNhs13606.13253-142C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13253-142C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF760EPB K562 ZNF184 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF184 in K562 from ENCODE 3 (ENCFF760EPB) 0 802 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF184 in K562 from ENCODE 3 (ENCFF760EPB)\ parent encTfChipPk off\ shortLabel K562 ZNF184 2\ subGroups cellType=K562 factor=ZNF184\ track encTfChipPkENCFF760EPB\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_tpm_rev MscAdipogenicInduction_02hr30minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_reverse 1 802 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep1.CNhs13606.13253-142C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13253-142C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_ctss_rev MscAdipogenicInduction_02hr30minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_reverse 0 802 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep1.CNhs13606.13253-142C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13253-142C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF007EEV K562 ZNF24 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF24 in K562 from ENCODE 3 (ENCFF007EEV) 0 803 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF24 in K562 from ENCODE 3 (ENCFF007EEV)\ parent encTfChipPk off\ shortLabel K562 ZNF24 1\ subGroups cellType=K562 factor=ZNF24\ track encTfChipPkENCFF007EEV\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_tpm_fwd MscAdipogenicInduction_02hr30minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_forward 1 803 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep3.CNhs13608.13255-142C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13255-142C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_ctss_fwd MscAdipogenicInduction_02hr30minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_forward 0 803 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep3.CNhs13608.13255-142C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13255-142C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF723JDW K562 ZNF24 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF24 in K562 from ENCODE 3 (ENCFF723JDW) 0 804 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF24 in K562 from ENCODE 3 (ENCFF723JDW)\ parent encTfChipPk off\ shortLabel K562 ZNF24 2\ subGroups cellType=K562 factor=ZNF24\ track encTfChipPkENCFF723JDW\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_tpm_rev MscAdipogenicInduction_02hr30minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_reverse 1 804 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep3.CNhs13608.13255-142C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13255-142C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_ctss_rev MscAdipogenicInduction_02hr30minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_reverse 0 804 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep3.CNhs13608.13255-142C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13255-142C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF260CBQ K562 ZNF24 3 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF24 in K562 from ENCODE 3 (ENCFF260CBQ) 0 805 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF24 in K562 from ENCODE 3 (ENCFF260CBQ)\ parent encTfChipPk off\ shortLabel K562 ZNF24 3\ subGroups cellType=K562 factor=ZNF24\ track encTfChipPkENCFF260CBQ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_tpm_fwd MscAdipogenicInduction_03hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_forward 1 805 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep1.CNhs13609.13256-142C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13256-142C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_ctss_fwd MscAdipogenicInduction_03hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_forward 0 805 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep1.CNhs13609.13256-142C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13256-142C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF323AWS K562 ZNF274 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF274 in K562 from ENCODE 3 (ENCFF323AWS) 0 806 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF274 in K562 from ENCODE 3 (ENCFF323AWS)\ parent encTfChipPk off\ shortLabel K562 ZNF274 1\ subGroups cellType=K562 factor=ZNF274\ track encTfChipPkENCFF323AWS\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_tpm_rev MscAdipogenicInduction_03hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_reverse 1 806 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep1.CNhs13609.13256-142C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13256-142C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_ctss_rev MscAdipogenicInduction_03hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_reverse 0 806 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep1.CNhs13609.13256-142C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13256-142C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF498VQZ K562 ZNF274 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF274 in K562 from ENCODE 3 (ENCFF498VQZ) 0 807 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF274 in K562 from ENCODE 3 (ENCFF498VQZ)\ parent encTfChipPk off\ shortLabel K562 ZNF274 2\ subGroups cellType=K562 factor=ZNF274\ track encTfChipPkENCFF498VQZ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_tpm_fwd MscAdipogenicInduction_03hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_forward 1 807 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep3.CNhs13611.13258-142C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13258-142C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_ctss_fwd MscAdipogenicInduction_03hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_forward 0 807 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep3.CNhs13611.13258-142C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13258-142C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF074WRG K562 ZNF280A narrowPeak Transcription Factor ChIP-seq Peaks of ZNF280A in K562 from ENCODE 3 (ENCFF074WRG) 0 808 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF280A in K562 from ENCODE 3 (ENCFF074WRG)\ parent encTfChipPk off\ shortLabel K562 ZNF280A\ subGroups cellType=K562 factor=ZNF280A\ track encTfChipPkENCFF074WRG\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_tpm_rev MscAdipogenicInduction_03hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_reverse 1 808 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep3.CNhs13611.13258-142C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13258-142C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_ctss_rev MscAdipogenicInduction_03hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_reverse 0 808 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep3.CNhs13611.13258-142C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13258-142C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF596JDS K562 ZNF282 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF282 in K562 from ENCODE 3 (ENCFF596JDS) 0 809 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF282 in K562 from ENCODE 3 (ENCFF596JDS)\ parent encTfChipPk off\ shortLabel K562 ZNF282\ subGroups cellType=K562 factor=ZNF282\ track encTfChipPkENCFF596JDS\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_tpm_fwd MscAdipogenicInduction_Day01Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_forward 1 809 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep2.CNhs13616.13263-142D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13263-142D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day01Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_ctss_fwd MscAdipogenicInduction_Day01Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_forward 0 809 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep2.CNhs13616.13263-142D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13263-142D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day01Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF806GUF K562 ZNF316 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF316 in K562 from ENCODE 3 (ENCFF806GUF) 0 810 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF316 in K562 from ENCODE 3 (ENCFF806GUF)\ parent encTfChipPk off\ shortLabel K562 ZNF316 1\ subGroups cellType=K562 factor=ZNF316\ track encTfChipPkENCFF806GUF\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_tpm_rev MscAdipogenicInduction_Day01Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_reverse 1 810 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep2.CNhs13616.13263-142D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13263-142D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day01Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_ctss_rev MscAdipogenicInduction_Day01Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_reverse 0 810 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep2.CNhs13616.13263-142D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13263-142D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day01Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF056SEM K562 ZNF316 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF316 in K562 from ENCODE 3 (ENCFF056SEM) 0 811 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF316 in K562 from ENCODE 3 (ENCFF056SEM)\ parent encTfChipPk off\ shortLabel K562 ZNF316 2\ subGroups cellType=K562 factor=ZNF316\ track encTfChipPkENCFF056SEM\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_tpm_fwd MscAdipogenicInduction_Day01Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_forward 1 811 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep3.CNhs13617.13264-142D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13264-142D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day01Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_ctss_fwd MscAdipogenicInduction_Day01Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_forward 0 811 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep3.CNhs13617.13264-142D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13264-142D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day01Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF577LQR K562 ZNF318 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF318 in K562 from ENCODE 3 (ENCFF577LQR) 0 812 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF318 in K562 from ENCODE 3 (ENCFF577LQR)\ parent encTfChipPk off\ shortLabel K562 ZNF318 1\ subGroups cellType=K562 factor=ZNF318\ track encTfChipPkENCFF577LQR\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_tpm_rev MscAdipogenicInduction_Day01Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_reverse 1 812 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep3.CNhs13617.13264-142D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13264-142D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day01Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_ctss_rev MscAdipogenicInduction_Day01Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_reverse 0 812 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep3.CNhs13617.13264-142D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13264-142D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day01Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF082RIZ K562 ZNF318 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF318 in K562 from ENCODE 3 (ENCFF082RIZ) 0 813 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF318 in K562 from ENCODE 3 (ENCFF082RIZ)\ parent encTfChipPk off\ shortLabel K562 ZNF318 2\ subGroups cellType=K562 factor=ZNF318\ track encTfChipPkENCFF082RIZ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_tpm_fwd MscAdipogenicInduction_Day02Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_forward 1 813 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep1.CNhs13619.13265-142D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13265-142D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day02Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_ctss_fwd MscAdipogenicInduction_Day02Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_forward 0 813 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep1.CNhs13619.13265-142D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13265-142D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day02Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF106YXG K562 ZNF384 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF384 in K562 from ENCODE 3 (ENCFF106YXG) 0 814 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF384 in K562 from ENCODE 3 (ENCFF106YXG)\ parent encTfChipPk off\ shortLabel K562 ZNF384\ subGroups cellType=K562 factor=ZNF384\ track encTfChipPkENCFF106YXG\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_tpm_rev MscAdipogenicInduction_Day02Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_reverse 1 814 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep1.CNhs13619.13265-142D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13265-142D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day02Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_ctss_rev MscAdipogenicInduction_Day02Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_reverse 0 814 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep1.CNhs13619.13265-142D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13265-142D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day02Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF644XES K562 ZNF407 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF407 in K562 from ENCODE 3 (ENCFF644XES) 0 815 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF407 in K562 from ENCODE 3 (ENCFF644XES)\ parent encTfChipPk off\ shortLabel K562 ZNF407 1\ subGroups cellType=K562 factor=ZNF407\ track encTfChipPkENCFF644XES\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_tpm_fwd MscAdipogenicInduction_Day02Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_forward 1 815 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep2.CNhs13620.13266-142D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13266-142D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day02Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_ctss_fwd MscAdipogenicInduction_Day02Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_forward 0 815 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep2.CNhs13620.13266-142D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13266-142D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day02Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF538GSS K562 ZNF407 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF407 in K562 from ENCODE 3 (ENCFF538GSS) 0 816 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF407 in K562 from ENCODE 3 (ENCFF538GSS)\ parent encTfChipPk off\ shortLabel K562 ZNF407 2\ subGroups cellType=K562 factor=ZNF407\ track encTfChipPkENCFF538GSS\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_tpm_rev MscAdipogenicInduction_Day02Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_reverse 1 816 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep2.CNhs13620.13266-142D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13266-142D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day02Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_ctss_rev MscAdipogenicInduction_Day02Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_reverse 0 816 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep2.CNhs13620.13266-142D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13266-142D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day02Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF972UGK K562 ZNF592 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF592 in K562 from ENCODE 3 (ENCFF972UGK) 0 817 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF592 in K562 from ENCODE 3 (ENCFF972UGK)\ parent encTfChipPk off\ shortLabel K562 ZNF592\ subGroups cellType=K562 factor=ZNF592\ track encTfChipPkENCFF972UGK\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_tpm_fwd MscAdipogenicInduction_Day02Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_forward 1 817 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep3.CNhs13621.13267-142D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13267-142D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day02Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_ctss_fwd MscAdipogenicInduction_Day02Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_forward 0 817 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep3.CNhs13621.13267-142D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13267-142D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day02Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF404EVY K562 ZNF639 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF639 in K562 from ENCODE 3 (ENCFF404EVY) 0 818 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF639 in K562 from ENCODE 3 (ENCFF404EVY)\ parent encTfChipPk off\ shortLabel K562 ZNF639 1\ subGroups cellType=K562 factor=ZNF639\ track encTfChipPkENCFF404EVY\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_tpm_rev MscAdipogenicInduction_Day02Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_reverse 1 818 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep3.CNhs13621.13267-142D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13267-142D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day02Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_ctss_rev MscAdipogenicInduction_Day02Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_reverse 0 818 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep3.CNhs13621.13267-142D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13267-142D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day02Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF008JJE K562 ZNF639 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF639 in K562 from ENCODE 3 (ENCFF008JJE) 0 819 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF639 in K562 from ENCODE 3 (ENCFF008JJE)\ parent encTfChipPk off\ shortLabel K562 ZNF639 2\ subGroups cellType=K562 factor=ZNF639\ track encTfChipPkENCFF008JJE\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_tpm_fwd MscAdipogenicInduction_Day04Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_forward 1 819 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep1.CNhs13622.13268-142E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13268-142E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day04Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_ctss_fwd MscAdipogenicInduction_Day04Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_forward 0 819 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep1.CNhs13622.13268-142E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13268-142E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day04Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF951OSW K562 ZNF830 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF830 in K562 from ENCODE 3 (ENCFF951OSW) 0 820 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF830 in K562 from ENCODE 3 (ENCFF951OSW)\ parent encTfChipPk off\ shortLabel K562 ZNF830 1\ subGroups cellType=K562 factor=ZNF830\ track encTfChipPkENCFF951OSW\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_tpm_rev MscAdipogenicInduction_Day04Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_reverse 1 820 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep1.CNhs13622.13268-142E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13268-142E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day04Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_ctss_rev MscAdipogenicInduction_Day04Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_reverse 0 820 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep1.CNhs13622.13268-142E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13268-142E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day04Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF979NKM K562 ZNF830 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF830 in K562 from ENCODE 3 (ENCFF979NKM) 0 821 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF830 in K562 from ENCODE 3 (ENCFF979NKM)\ parent encTfChipPk off\ shortLabel K562 ZNF830 2\ subGroups cellType=K562 factor=ZNF830\ track encTfChipPkENCFF979NKM\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_tpm_fwd MscAdipogenicInduction_Day04Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_forward 1 821 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep3.CNhs13624.13270-142E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13270-142E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day04Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_ctss_fwd MscAdipogenicInduction_Day04Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_forward 0 821 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep3.CNhs13624.13270-142E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13270-142E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day04Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF908ZLN K562 ZSCAN29 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZSCAN29 in K562 from ENCODE 3 (ENCFF908ZLN) 0 822 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZSCAN29 in K562 from ENCODE 3 (ENCFF908ZLN)\ parent encTfChipPk off\ shortLabel K562 ZSCAN29 1\ subGroups cellType=K562 factor=ZSCAN29\ track encTfChipPkENCFF908ZLN\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_tpm_rev MscAdipogenicInduction_Day04Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_reverse 1 822 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep3.CNhs13624.13270-142E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13270-142E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day04Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_ctss_rev MscAdipogenicInduction_Day04Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_reverse 0 822 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep3.CNhs13624.13270-142E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13270-142E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day04Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF979GFF K562 ZSCAN29 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZSCAN29 in K562 from ENCODE 3 (ENCFF979GFF) 0 823 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZSCAN29 in K562 from ENCODE 3 (ENCFF979GFF)\ parent encTfChipPk off\ shortLabel K562 ZSCAN29 2\ subGroups cellType=K562 factor=ZSCAN29\ track encTfChipPkENCFF979GFF\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_tpm_fwd MscAdipogenicInduction_Day08Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_forward 1 823 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep1.CNhs13625.13271-142E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13271-142E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day08Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_ctss_fwd MscAdipogenicInduction_Day08Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_forward 0 823 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep1.CNhs13625.13271-142E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13271-142E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day08Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF945HJR K562 ZZZ3 narrowPeak Transcription Factor ChIP-seq Peaks of ZZZ3 in K562 from ENCODE 3 (ENCFF945HJR) 0 824 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZZZ3 in K562 from ENCODE 3 (ENCFF945HJR)\ parent encTfChipPk off\ shortLabel K562 ZZZ3\ subGroups cellType=K562 factor=ZZZ3\ track encTfChipPkENCFF945HJR\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_tpm_rev MscAdipogenicInduction_Day08Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_reverse 1 824 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep1.CNhs13625.13271-142E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13271-142E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day08Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_ctss_rev MscAdipogenicInduction_Day08Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_reverse 0 824 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep1.CNhs13625.13271-142E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13271-142E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day08Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF649QKE KMS-11 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in KMS-11 from ENCODE 3 (ENCFF649QKE) 0 825 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in KMS-11 from ENCODE 3 (ENCFF649QKE)\ parent encTfChipPk off\ shortLabel KMS-11 CTCF\ subGroups cellType=KMS-11 factor=CTCF\ track encTfChipPkENCFF649QKE\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_tpm_fwd MscAdipogenicInduction_Day08Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_forward 1 825 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep2.CNhs13626.13272-142E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13272-142E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day08Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_ctss_fwd MscAdipogenicInduction_Day08Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_forward 0 825 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep2.CNhs13626.13272-142E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13272-142E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day08Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF850DQJ LNCAP CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in LNCAP from ENCODE 3 (ENCFF850DQJ) 0 826 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in LNCAP from ENCODE 3 (ENCFF850DQJ)\ parent encTfChipPk off\ shortLabel LNCAP CTCF 1\ subGroups cellType=LNCAP factor=CTCF\ track encTfChipPkENCFF850DQJ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_tpm_rev MscAdipogenicInduction_Day08Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_reverse 1 826 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep2.CNhs13626.13272-142E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13272-142E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day08Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_ctss_rev MscAdipogenicInduction_Day08Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_reverse 0 826 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep2.CNhs13626.13272-142E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13272-142E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day08Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF501SHB LNCAP CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in LNCAP from ENCODE 3 (ENCFF501SHB) 0 827 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in LNCAP from ENCODE 3 (ENCFF501SHB)\ parent encTfChipPk off\ shortLabel LNCAP CTCF 2\ subGroups cellType=LNCAP factor=CTCF\ track encTfChipPkENCFF501SHB\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_tpm_fwd MscAdipogenicInduction_Day08Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_forward 1 827 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep3.CNhs13627.13273-142E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13273-142E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day08Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_ctss_fwd MscAdipogenicInduction_Day08Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_forward 0 827 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep3.CNhs13627.13273-142E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13273-142E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day08Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF670NSE LNCaP_FGC CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in LNCaP_clone_FGC from ENCODE 3 (ENCFF670NSE) 0 828 255 102 85 255 178 170 0 0 0 regulation 1 color 255,102,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in LNCaP_clone_FGC from ENCODE 3 (ENCFF670NSE)\ parent encTfChipPk off\ shortLabel LNCaP_FGC CTCF\ subGroups cellType=LNCaP_clone_FGC factor=CTCF\ track encTfChipPkENCFF670NSE\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_tpm_rev MscAdipogenicInduction_Day08Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_reverse 1 828 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep3.CNhs13627.13273-142E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13273-142E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day08Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_ctss_rev MscAdipogenicInduction_Day08Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_reverse 0 828 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep3.CNhs13627.13273-142E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13273-142E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day08Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF707BQD Loucy CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Loucy from ENCODE 3 (ENCFF707BQD) 0 829 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in Loucy from ENCODE 3 (ENCFF707BQD)\ parent encTfChipPk off\ shortLabel Loucy CTCF\ subGroups cellType=Loucy factor=CTCF\ track encTfChipPkENCFF707BQD\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_tpm_fwd MscAdipogenicInduction_Day12Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_forward 1 829 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep1.CNhs13628.13274-142E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13274-142E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_ctss_fwd MscAdipogenicInduction_Day12Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_forward 0 829 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep1.CNhs13628.13274-142E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13274-142E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF618NVV MCF-7 ARID3A narrowPeak Transcription Factor ChIP-seq Peaks of ARID3A in MCF-7 from ENCODE 3 (ENCFF618NVV) 0 830 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ARID3A in MCF-7 from ENCODE 3 (ENCFF618NVV)\ parent encTfChipPk off\ shortLabel MCF-7 ARID3A\ subGroups cellType=MCF-7 factor=ARID3A\ track encTfChipPkENCFF618NVV\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_tpm_rev MscAdipogenicInduction_Day12Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_reverse 1 830 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep1.CNhs13628.13274-142E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13274-142E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_ctss_rev MscAdipogenicInduction_Day12Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_reverse 0 830 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep1.CNhs13628.13274-142E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13274-142E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF760ZVI MCF-7 ATF7 narrowPeak Transcription Factor ChIP-seq Peaks of ATF7 in MCF-7 from ENCODE 3 (ENCFF760ZVI) 0 831 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ATF7 in MCF-7 from ENCODE 3 (ENCFF760ZVI)\ parent encTfChipPk off\ shortLabel MCF-7 ATF7\ subGroups cellType=MCF-7 factor=ATF7\ track encTfChipPkENCFF760ZVI\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_tpm_fwd MscAdipogenicInduction_Day12Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_forward 1 831 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep2.CNhs13629.13275-142E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13275-142E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day12Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_ctss_fwd MscAdipogenicInduction_Day12Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_forward 0 831 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep2.CNhs13629.13275-142E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13275-142E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day12Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF414LXZ MCF-7 BMI1 narrowPeak Transcription Factor ChIP-seq Peaks of BMI1 in MCF-7 from ENCODE 3 (ENCFF414LXZ) 0 832 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of BMI1 in MCF-7 from ENCODE 3 (ENCFF414LXZ)\ parent encTfChipPk off\ shortLabel MCF-7 BMI1\ subGroups cellType=MCF-7 factor=BMI1\ track encTfChipPkENCFF414LXZ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_tpm_rev MscAdipogenicInduction_Day12Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_reverse 1 832 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep2.CNhs13629.13275-142E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13275-142E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day12Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_ctss_rev MscAdipogenicInduction_Day12Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_reverse 0 832 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep2.CNhs13629.13275-142E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13275-142E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day12Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF730UAD MCF-7 CHD1 narrowPeak Transcription Factor ChIP-seq Peaks of CHD1 in MCF-7 from ENCODE 3 (ENCFF730UAD) 0 833 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CHD1 in MCF-7 from ENCODE 3 (ENCFF730UAD)\ parent encTfChipPk off\ shortLabel MCF-7 CHD1\ subGroups cellType=MCF-7 factor=CHD1\ track encTfChipPkENCFF730UAD\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_tpm_fwd MscAdipogenicInduction_Day12Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_forward 1 833 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep3.CNhs13630.13276-142E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13276-142E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_ctss_fwd MscAdipogenicInduction_Day12Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_forward 0 833 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep3.CNhs13630.13276-142E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13276-142E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF025SMR MCF-7 CLOCK 1 narrowPeak Transcription Factor ChIP-seq Peaks of CLOCK in MCF-7 from ENCODE 3 (ENCFF025SMR) 0 834 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CLOCK in MCF-7 from ENCODE 3 (ENCFF025SMR)\ parent encTfChipPk off\ shortLabel MCF-7 CLOCK 1\ subGroups cellType=MCF-7 factor=CLOCK\ track encTfChipPkENCFF025SMR\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_tpm_rev MscAdipogenicInduction_Day12Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_reverse 1 834 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep3.CNhs13630.13276-142E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13276-142E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_ctss_rev MscAdipogenicInduction_Day12Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_reverse 0 834 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep3.CNhs13630.13276-142E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13276-142E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF305CRL MCF-7 CLOCK 2 narrowPeak Transcription Factor ChIP-seq Peaks of CLOCK in MCF-7 from ENCODE 3 (ENCFF305CRL) 0 835 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CLOCK in MCF-7 from ENCODE 3 (ENCFF305CRL)\ parent encTfChipPk off\ shortLabel MCF-7 CLOCK 2\ subGroups cellType=MCF-7 factor=CLOCK\ track encTfChipPkENCFF305CRL\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_tpm_fwd MscAdipogenicInduction_Day14Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_forward 1 835 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep1.CNhs13338.13277-142F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13277-142F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day14Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_ctss_fwd MscAdipogenicInduction_Day14Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_forward 0 835 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep1.CNhs13338.13277-142F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13277-142F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day14Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF682WFF MCF-7 COPS2 narrowPeak Transcription Factor ChIP-seq Peaks of COPS2 in MCF-7 from ENCODE 3 (ENCFF682WFF) 0 836 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of COPS2 in MCF-7 from ENCODE 3 (ENCFF682WFF)\ parent encTfChipPk off\ shortLabel MCF-7 COPS2\ subGroups cellType=MCF-7 factor=COPS2\ track encTfChipPkENCFF682WFF\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_tpm_rev MscAdipogenicInduction_Day14Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_reverse 1 836 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep1.CNhs13338.13277-142F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13277-142F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day14Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_ctss_rev MscAdipogenicInduction_Day14Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_reverse 0 836 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep1.CNhs13338.13277-142F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13277-142F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day14Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF495PCJ MCF-7 CREB1 1 narrowPeak Transcription Factor ChIP-seq Peaks of CREB1 in MCF-7 from ENCODE 3 (ENCFF495PCJ) 0 837 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CREB1 in MCF-7 from ENCODE 3 (ENCFF495PCJ)\ parent encTfChipPk off\ shortLabel MCF-7 CREB1 1\ subGroups cellType=MCF-7 factor=CREB1\ track encTfChipPkENCFF495PCJ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep3_CNhs13632_tpm_fwd MscAdipogenicInduction_Day14Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep3_CNhs13632_13279-142F3_forward 1 837 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13279-142F3 regulation 0 bigDataUrl 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FANTOM5 Details:\ encTfChipPkENCFF942TCG MCF-7 CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF942TCG) 0 842 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF942TCG)\ parent encTfChipPk off\ shortLabel MCF-7 CTCF 3\ subGroups cellType=MCF-7 factor=CTCF\ track encTfChipPkENCFF942TCG\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor2150_120Ud_0h_CNhs13646_tpm_rev MonocyteMacrophageUdornInfluenza_00hr00minD2- bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor2 (150_120:Ud_0h)_CNhs13646_13317-143A5_reverse 1 842 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13317-143A5 regulation 0 bigDataUrl 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FANTOM5 Details:\ encTfChipPkENCFF685HMV MCF-7 CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF685HMV) 0 843 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF685HMV)\ parent encTfChipPk off\ shortLabel MCF-7 CTCF 4\ subGroups cellType=MCF-7 factor=CTCF\ track encTfChipPkENCFF685HMV\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor3536_119Ud_0h_CNhs13650_tpm_fwd MonocyteMacrophageUdornInfluenza_00hr00minD3+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor3 (536_119:Ud_0h)_CNhs13650_13323-143B2_forward 1 843 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13323-143B2 regulation 0 bigDataUrl 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FANTOM5 Details:\ encTfChipPkENCFF785NTC MCF-7 CTCF 6 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF785NTC) 0 845 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF785NTC)\ parent encTfChipPk off\ shortLabel MCF-7 CTCF 6\ subGroups cellType=MCF-7 factor=CTCF\ track encTfChipPkENCFF785NTC\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor4227_121Ud_0h_CNhs13639_tpm_fwd MonocyteMacrophageUdornInfluenza_00hr00minD4+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor4 (227_121:Ud_0h)_CNhs13639_13311-142I8_forward 1 845 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13311-142I8 regulation 0 bigDataUrl 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to udorn influenza infection, 00hr00min, donor4 (227_121:Ud_0h)_CNhs13639_13311-142I8_forward 0 845 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13311-142I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aUd_0h%29.CNhs13639.13311-142I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor4 (227_121:Ud_0h)_CNhs13639_13311-142I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13311-142I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor4227_121Ud_0h_CNhs13639_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13311-142I8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF762CDY MCF-7 CUX1 narrowPeak Transcription Factor ChIP-seq Peaks of CUX1 in MCF-7 from ENCODE 3 (ENCFF762CDY) 0 846 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CUX1 in MCF-7 from ENCODE 3 (ENCFF762CDY)\ parent encTfChipPk off\ shortLabel MCF-7 CUX1\ subGroups cellType=MCF-7 factor=CUX1\ track encTfChipPkENCFF762CDY\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor4227_121Ud_0h_CNhs13639_tpm_rev MonocyteMacrophageUdornInfluenza_00hr00minD4- bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor4 (227_121:Ud_0h)_CNhs13639_13311-142I8_reverse 1 846 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13311-142I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aUd_0h%29.CNhs13639.13311-142I8.hg38.tpm.rev.bw\ 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ontology_id=13306-142I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor1868_121Ud_2h_CNhs13555_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13306-142I3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor1868_121Ud_2h_CNhs13555_ctss_fwd MonocyteMacrophageUdornInfluenza_02hr00minD1+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor1 (868_121:Ud_2h)_CNhs13555_13306-142I3_forward 0 847 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13306-142I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor1%20%28868_121%3aUd_2h%29.CNhs13555.13306-142I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor1 (868_121:Ud_2h)_CNhs13555_13306-142I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13306-142I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor1868_121Ud_2h_CNhs13555_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13306-142I3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF072VGV MCF-7 E2F8 narrowPeak Transcription Factor ChIP-seq Peaks of E2F8 in MCF-7 from ENCODE 3 (ENCFF072VGV) 0 848 190 85 255 222 170 255 0 0 0 regulation 1 color 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/gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor1%20%28868_121%3aUd_2h%29.CNhs13555.13306-142I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor1 (868_121:Ud_2h)_CNhs13555_13306-142I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13306-142I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor1868_121Ud_2h_CNhs13555_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13306-142I3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF347USC MCF-7 E4F1 narrowPeak Transcription Factor ChIP-seq Peaks of E4F1 in MCF-7 from ENCODE 3 (ENCFF347USC) 0 849 190 85 255 222 170 255 0 0 0 regulation 1 color 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ontology_id=13324-143B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor3536_119Ud_2h_CNhs13651_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13324-143B3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor3536_119Ud_2h_CNhs13651_ctss_fwd MonocyteMacrophageUdornInfluenza_02hr00minD3+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor3 (536_119:Ud_2h)_CNhs13651_13324-143B3_forward 0 849 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13324-143B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor3%20%28536_119%3aUd_2h%29.CNhs13651.13324-143B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor3 (536_119:Ud_2h)_CNhs13651_13324-143B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13324-143B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor3536_119Ud_2h_CNhs13651_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13324-143B3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF020UCD MCF-7 ELF1 narrowPeak Transcription Factor ChIP-seq Peaks of ELF1 in MCF-7 from ENCODE 3 (ENCFF020UCD) 0 850 190 85 255 222 170 255 0 0 0 regulation 1 color 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/gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aUd_24h%29.CNhs13560.13320-143A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor2 (150_120:Ud_24h)_CNhs13560_13320-143A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13320-143A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor2150_120Ud_24h_CNhs13560_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13320-143A8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF873SVI MCF-7 MAFK narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in MCF-7 from ENCODE 3 (ENCFF873SVI) 0 865 190 85 255 222 170 255 0 0 0 regulation 1 color 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ontology_id=13326-143B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_ctss_fwd MonocyteMacrophageUdornInfluenza_24hr00minD3+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor3 (536_119:Ud_24h)_CNhs13562_13326-143B5_forward 0 865 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aUd_24h%29.CNhs13562.13326-143B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor3 (536_119:Ud_24h)_CNhs13562_13326-143B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13326-143B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF464QAL MCF-7 MBD2 narrowPeak Transcription Factor ChIP-seq Peaks of MBD2 in MCF-7 from ENCODE 3 (ENCFF464QAL) 0 866 190 85 255 222 170 255 0 0 0 regulation 1 color 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ontology_id=13326-143B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_ctss_rev MonocyteMacrophageUdornInfluenza_24hr00minD3- bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor3 (536_119:Ud_24h)_CNhs13562_13326-143B5_reverse 0 866 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aUd_24h%29.CNhs13562.13326-143B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor3 (536_119:Ud_24h)_CNhs13562_13326-143B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13326-143B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF578NMN MCF-7 MLLT1 narrowPeak Transcription Factor ChIP-seq Peaks of MLLT1 in MCF-7 from ENCODE 3 (ENCFF578NMN) 0 867 190 85 255 222 170 255 0 0 0 regulation 1 color 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sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_00hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_ctss_fwd Tc:MdmToMock_00hr00minD2+ bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_forward 0 867 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aMI_0h%29.CNhs13645.13316-143A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13316-143A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_00hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF403BWK MCF-7 MNT 1 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in MCF-7 from ENCODE 3 (ENCFF403BWK) 0 868 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MNT in MCF-7 from ENCODE 3 (ENCFF403BWK)\ parent encTfChipPk off\ shortLabel MCF-7 MNT 1\ subGroups cellType=MCF-7 factor=MNT\ track encTfChipPkENCFF403BWK\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_tpm_rev Tc:MdmToMock_00hr00minD2- bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_reverse 1 868 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aMI_0h%29.CNhs13645.13316-143A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13316-143A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_00hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_ctss_rev Tc:MdmToMock_00hr00minD2- bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_reverse 0 868 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aMI_0h%29.CNhs13645.13316-143A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13316-143A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_00hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF432GSK MCF-7 MNT 2 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in MCF-7 from ENCODE 3 (ENCFF432GSK) 0 869 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MNT in MCF-7 from ENCODE 3 (ENCFF432GSK)\ parent encTfChipPk off\ shortLabel MCF-7 MNT 2\ subGroups cellType=MCF-7 factor=MNT\ track encTfChipPkENCFF432GSK\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_tpm_fwd Tc:MdmToMock_00hr00minD3+ bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_forward 1 869 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aMI_0h%29.CNhs13649.13322-143B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13322-143B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_00hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_ctss_fwd Tc:MdmToMock_00hr00minD3+ bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_forward 0 869 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aMI_0h%29.CNhs13649.13322-143B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13322-143B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_00hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF225VFR MCF-7 MTA1 narrowPeak Transcription Factor ChIP-seq Peaks of MTA1 in MCF-7 from ENCODE 3 (ENCFF225VFR) 0 870 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MTA1 in MCF-7 from ENCODE 3 (ENCFF225VFR)\ parent encTfChipPk off\ shortLabel MCF-7 MTA1\ subGroups cellType=MCF-7 factor=MTA1\ track encTfChipPkENCFF225VFR\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_tpm_rev Tc:MdmToMock_00hr00minD3- bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_reverse 1 870 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aMI_0h%29.CNhs13649.13322-143B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13322-143B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_00hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_ctss_rev Tc:MdmToMock_00hr00minD3- bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_reverse 0 870 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aMI_0h%29.CNhs13649.13322-143B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13322-143B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_00hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF180XXZ MCF-7 MTA2 narrowPeak Transcription Factor ChIP-seq Peaks of MTA2 in MCF-7 from ENCODE 3 (ENCFF180XXZ) 0 871 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MTA2 in MCF-7 from ENCODE 3 (ENCFF180XXZ)\ parent encTfChipPk off\ shortLabel MCF-7 MTA2\ subGroups cellType=MCF-7 factor=MTA2\ track encTfChipPkENCFF180XXZ\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_tpm_fwd Tc:MdmToMock_00hr00minD4+ bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_forward 1 871 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aMI_0h%29.CNhs13638.13310-142I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13310-142I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_00hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_ctss_fwd Tc:MdmToMock_00hr00minD4+ bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_forward 0 871 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aMI_0h%29.CNhs13638.13310-142I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13310-142I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_00hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF083AZM MCF-7 MTA3 narrowPeak Transcription Factor ChIP-seq Peaks of MTA3 in MCF-7 from ENCODE 3 (ENCFF083AZM) 0 872 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MTA3 in MCF-7 from ENCODE 3 (ENCFF083AZM)\ parent encTfChipPk off\ shortLabel MCF-7 MTA3\ subGroups cellType=MCF-7 factor=MTA3\ track encTfChipPkENCFF083AZM\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_tpm_rev Tc:MdmToMock_00hr00minD4- bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_reverse 1 872 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aMI_0h%29.CNhs13638.13310-142I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13310-142I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_00hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_ctss_rev Tc:MdmToMock_00hr00minD4- bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_reverse 0 872 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aMI_0h%29.CNhs13638.13310-142I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13310-142I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_00hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF300OKR MCF-7 MYC 1 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in MCF-7 from ENCODE 3 (ENCFF300OKR) 0 873 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MYC in MCF-7 from ENCODE 3 (ENCFF300OKR)\ parent encTfChipPk off\ shortLabel MCF-7 MYC 1\ subGroups cellType=MCF-7 factor=MYC\ track encTfChipPkENCFF300OKR\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_tpm_fwd Tc:MdmToMock_24hr00minD1+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_forward 1 873 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor1%20%28868_121%3aMI_24h%29.CNhs13693.13309-142I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13309-142I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_ctss_fwd Tc:MdmToMock_24hr00minD1+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_forward 0 873 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor1%20%28868_121%3aMI_24h%29.CNhs13693.13309-142I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13309-142I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF658XME MCF-7 MYC 2 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in MCF-7 from ENCODE 3 (ENCFF658XME) 0 874 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MYC in MCF-7 from ENCODE 3 (ENCFF658XME)\ parent encTfChipPk off\ shortLabel MCF-7 MYC 2\ subGroups cellType=MCF-7 factor=MYC\ track encTfChipPkENCFF658XME\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_tpm_rev Tc:MdmToMock_24hr00minD1- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_reverse 1 874 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor1%20%28868_121%3aMI_24h%29.CNhs13693.13309-142I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13309-142I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_ctss_rev Tc:MdmToMock_24hr00minD1- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_reverse 0 874 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor1%20%28868_121%3aMI_24h%29.CNhs13693.13309-142I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13309-142I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF370EQJ MCF-7 MYC 3 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in MCF-7 from ENCODE 3 (ENCFF370EQJ) 0 875 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MYC in MCF-7 from ENCODE 3 (ENCFF370EQJ)\ parent encTfChipPk off\ shortLabel MCF-7 MYC 3\ subGroups cellType=MCF-7 factor=MYC\ track encTfChipPkENCFF370EQJ\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_tpm_fwd Tc:MdmToMock_24hr00minD2+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_forward 1 875 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aMI_24h%29.CNhs13648.13321-143A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13321-143A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_ctss_fwd Tc:MdmToMock_24hr00minD2+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_forward 0 875 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aMI_24h%29.CNhs13648.13321-143A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13321-143A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF209WRW MCF-7 NBN narrowPeak Transcription Factor ChIP-seq Peaks of NBN in MCF-7 from ENCODE 3 (ENCFF209WRW) 0 876 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of NBN in MCF-7 from ENCODE 3 (ENCFF209WRW)\ parent encTfChipPk off\ shortLabel MCF-7 NBN\ subGroups cellType=MCF-7 factor=NBN\ track encTfChipPkENCFF209WRW\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_tpm_rev Tc:MdmToMock_24hr00minD2- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_reverse 1 876 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aMI_24h%29.CNhs13648.13321-143A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13321-143A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_ctss_rev Tc:MdmToMock_24hr00minD2- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_reverse 0 876 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aMI_24h%29.CNhs13648.13321-143A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13321-143A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF320TAN MCF-7 NCOA3 1 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA3 in MCF-7 from ENCODE 3 (ENCFF320TAN) 0 877 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of NCOA3 in MCF-7 from ENCODE 3 (ENCFF320TAN)\ parent encTfChipPk off\ shortLabel MCF-7 NCOA3 1\ subGroups cellType=MCF-7 factor=NCOA3\ track encTfChipPkENCFF320TAN\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_tpm_fwd Tc:MdmToMock_24hr00minD3+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_forward 1 877 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aMI_24h%29.CNhs13652.13327-143B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13327-143B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_ctss_fwd Tc:MdmToMock_24hr00minD3+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_forward 0 877 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aMI_24h%29.CNhs13652.13327-143B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13327-143B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF510UNI MCF-7 NCOA3 2 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA3 in MCF-7 from ENCODE 3 (ENCFF510UNI) 0 878 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of NCOA3 in MCF-7 from ENCODE 3 (ENCFF510UNI)\ parent encTfChipPk off\ shortLabel MCF-7 NCOA3 2\ subGroups cellType=MCF-7 factor=NCOA3\ track encTfChipPkENCFF510UNI\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_tpm_rev Tc:MdmToMock_24hr00minD3- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_reverse 1 878 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aMI_24h%29.CNhs13652.13327-143B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13327-143B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_ctss_rev Tc:MdmToMock_24hr00minD3- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_reverse 0 878 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aMI_24h%29.CNhs13652.13327-143B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13327-143B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF059LJD MCF-7 NEUROD1 narrowPeak Transcription Factor ChIP-seq Peaks of NEUROD1 in MCF-7 from ENCODE 3 (ENCFF059LJD) 0 879 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of NEUROD1 in MCF-7 from ENCODE 3 (ENCFF059LJD)\ parent encTfChipPk off\ shortLabel MCF-7 NEUROD1\ subGroups cellType=MCF-7 factor=NEUROD1\ track encTfChipPkENCFF059LJD\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_tpm_fwd Tc:MdmToMock_24hr00minD4+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_forward 1 879 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor4%20%28227_121%3aMI_24h%29.CNhs13644.13315-143A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13315-143A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_ctss_fwd Tc:MdmToMock_24hr00minD4+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_forward 0 879 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor4%20%28227_121%3aMI_24h%29.CNhs13644.13315-143A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13315-143A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF519XTN MCF-7 NFIB 1 narrowPeak Transcription Factor ChIP-seq Peaks of NFIB in MCF-7 from ENCODE 3 (ENCFF519XTN) 0 880 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of NFIB in MCF-7 from ENCODE 3 (ENCFF519XTN)\ parent encTfChipPk off\ shortLabel MCF-7 NFIB 1\ subGroups cellType=MCF-7 factor=NFIB\ track encTfChipPkENCFF519XTN\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_tpm_rev Tc:MdmToMock_24hr00minD4- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_reverse 1 880 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor4%20%28227_121%3aMI_24h%29.CNhs13644.13315-143A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13315-143A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_ctss_rev Tc:MdmToMock_24hr00minD4- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_reverse 0 880 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor4%20%28227_121%3aMI_24h%29.CNhs13644.13315-143A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13315-143A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF385WUL MCF-7 NFIB 2 narrowPeak Transcription Factor ChIP-seq Peaks of NFIB in MCF-7 from ENCODE 3 (ENCFF385WUL) 0 881 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of NFIB in MCF-7 from ENCODE 3 (ENCFF385WUL)\ parent encTfChipPk off\ shortLabel MCF-7 NFIB 2\ subGroups cellType=MCF-7 factor=NFIB\ track encTfChipPkENCFF385WUL\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_tpm_fwd Tc:MdmToLps_00hr00minD1+ bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_forward 1 881 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor1%20%28t1%20Subject1%29.CNhs11941.12698-135D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12698-135D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_ctss_fwd Tc:MdmToLps_00hr00minD1+ bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_forward 0 881 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor1%20%28t1%20Subject1%29.CNhs11941.12698-135D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12698-135D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF895MJB MCF-7 NFRKB narrowPeak Transcription Factor ChIP-seq Peaks of NFRKB in MCF-7 from ENCODE 3 (ENCFF895MJB) 0 882 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of NFRKB in MCF-7 from ENCODE 3 (ENCFF895MJB)\ parent encTfChipPk off\ shortLabel MCF-7 NFRKB\ subGroups cellType=MCF-7 factor=NFRKB\ track encTfChipPkENCFF895MJB\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_tpm_rev Tc:MdmToLps_00hr00minD1- bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_reverse 1 882 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor1%20%28t1%20Subject1%29.CNhs11941.12698-135D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12698-135D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_ctss_rev Tc:MdmToLps_00hr00minD1- bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_reverse 0 882 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor1%20%28t1%20Subject1%29.CNhs11941.12698-135D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12698-135D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF927DIO MCF-7 NFXL1 narrowPeak Transcription Factor ChIP-seq Peaks of NFXL1 in MCF-7 from ENCODE 3 (ENCFF927DIO) 0 883 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of NFXL1 in MCF-7 from ENCODE 3 (ENCFF927DIO)\ parent encTfChipPk off\ shortLabel MCF-7 NFXL1\ subGroups cellType=MCF-7 factor=NFXL1\ track encTfChipPkENCFF927DIO\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_tpm_fwd Tc:MdmToLps_00hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_forward 1 883 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor2%20%28t1%20Subject2%29.CNhs13379.12796-136F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12796-136F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_ctss_fwd Tc:MdmToLps_00hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_forward 0 883 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor2%20%28t1%20Subject2%29.CNhs13379.12796-136F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12796-136F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF269RME MCF-7 NRF1 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in MCF-7 from ENCODE 3 (ENCFF269RME) 0 884 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in MCF-7 from ENCODE 3 (ENCFF269RME)\ parent encTfChipPk off\ shortLabel MCF-7 NRF1\ subGroups cellType=MCF-7 factor=NRF1\ track encTfChipPkENCFF269RME\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_tpm_rev Tc:MdmToLps_00hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_reverse 1 884 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor2%20%28t1%20Subject2%29.CNhs13379.12796-136F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12796-136F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_ctss_rev Tc:MdmToLps_00hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_reverse 0 884 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor2%20%28t1%20Subject2%29.CNhs13379.12796-136F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12796-136F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF473UHQ MCF-7 PAX8 narrowPeak Transcription Factor ChIP-seq Peaks of PAX8 in MCF-7 from ENCODE 3 (ENCFF473UHQ) 0 885 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of PAX8 in MCF-7 from ENCODE 3 (ENCFF473UHQ)\ parent encTfChipPk off\ shortLabel MCF-7 PAX8\ subGroups cellType=MCF-7 factor=PAX8\ track encTfChipPkENCFF473UHQ\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_tpm_fwd Tc:MdmToLps_00hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_forward 1 885 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor3%20%28t1%20Subject3%29.CNhs13174.12894-137H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12894-137H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_ctss_fwd Tc:MdmToLps_00hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_forward 0 885 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor3%20%28t1%20Subject3%29.CNhs13174.12894-137H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12894-137H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF105PFS MCF-7 PKNOX1 narrowPeak Transcription Factor ChIP-seq Peaks of PKNOX1 in MCF-7 from ENCODE 3 (ENCFF105PFS) 0 886 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of PKNOX1 in MCF-7 from ENCODE 3 (ENCFF105PFS)\ parent encTfChipPk off\ shortLabel MCF-7 PKNOX1\ subGroups cellType=MCF-7 factor=PKNOX1\ track encTfChipPkENCFF105PFS\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_tpm_rev Tc:MdmToLps_00hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_reverse 1 886 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor3%20%28t1%20Subject3%29.CNhs13174.12894-137H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12894-137H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_ctss_rev Tc:MdmToLps_00hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_reverse 0 886 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor3%20%28t1%20Subject3%29.CNhs13174.12894-137H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12894-137H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF964EVA MCF-7 POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in MCF-7 from ENCODE 3 (ENCFF964EVA) 0 887 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in MCF-7 from ENCODE 3 (ENCFF964EVA)\ parent encTfChipPk off\ shortLabel MCF-7 POLR2A\ subGroups cellType=MCF-7 factor=POLR2A\ track encTfChipPkENCFF964EVA\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_tpm_fwd Tc:MdmToLps_00hr15minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_forward 1 887 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor2%20%28t2%20Subject2%29.CNhs13380.12797-136F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12797-136F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr15minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_ctss_fwd Tc:MdmToLps_00hr15minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_forward 0 887 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor2%20%28t2%20Subject2%29.CNhs13380.12797-136F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12797-136F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr15minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF091AYX MCF-7 RAD51 narrowPeak Transcription Factor ChIP-seq Peaks of RAD51 in MCF-7 from ENCODE 3 (ENCFF091AYX) 0 888 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of RAD51 in MCF-7 from ENCODE 3 (ENCFF091AYX)\ parent encTfChipPk off\ shortLabel MCF-7 RAD51\ subGroups cellType=MCF-7 factor=RAD51\ track encTfChipPkENCFF091AYX\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_tpm_rev Tc:MdmToLps_00hr15minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_reverse 1 888 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor2%20%28t2%20Subject2%29.CNhs13380.12797-136F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12797-136F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr15minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_ctss_rev Tc:MdmToLps_00hr15minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_reverse 0 888 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor2%20%28t2%20Subject2%29.CNhs13380.12797-136F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12797-136F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr15minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF838LXI MCF-7 RCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of RCOR1 in MCF-7 from ENCODE 3 (ENCFF838LXI) 0 889 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of RCOR1 in MCF-7 from ENCODE 3 (ENCFF838LXI)\ parent encTfChipPk off\ shortLabel MCF-7 RCOR1\ subGroups cellType=MCF-7 factor=RCOR1\ track encTfChipPkENCFF838LXI\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_tpm_fwd Tc:MdmToLps_00hr15minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_forward 1 889 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor3%20%28t2%20Subject3%29.CNhs13175.12895-137H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12895-137H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr15minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_ctss_fwd Tc:MdmToLps_00hr15minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_forward 0 889 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor3%20%28t2%20Subject3%29.CNhs13175.12895-137H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12895-137H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr15minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF928YTD MCF-7 RFX1 1 narrowPeak Transcription Factor ChIP-seq Peaks of RFX1 in MCF-7 from ENCODE 3 (ENCFF928YTD) 0 890 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of RFX1 in MCF-7 from ENCODE 3 (ENCFF928YTD)\ parent encTfChipPk off\ shortLabel MCF-7 RFX1 1\ subGroups cellType=MCF-7 factor=RFX1\ track encTfChipPkENCFF928YTD\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_tpm_rev Tc:MdmToLps_00hr15minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_reverse 1 890 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor3%20%28t2%20Subject3%29.CNhs13175.12895-137H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12895-137H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr15minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_ctss_rev Tc:MdmToLps_00hr15minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_reverse 0 890 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor3%20%28t2%20Subject3%29.CNhs13175.12895-137H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12895-137H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr15minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF150PTQ MCF-7 RFX1 2 narrowPeak Transcription Factor ChIP-seq Peaks of RFX1 in MCF-7 from ENCODE 3 (ENCFF150PTQ) 0 891 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of RFX1 in MCF-7 from ENCODE 3 (ENCFF150PTQ)\ parent encTfChipPk off\ shortLabel MCF-7 RFX1 2\ subGroups cellType=MCF-7 factor=RFX1\ track encTfChipPkENCFF150PTQ\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_tpm_fwd Tc:MdmToLps_00hr30minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_forward 1 891 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor2%20%28t3%20Subject2%29.CNhs13381.12798-136F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12798-136F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr30minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_ctss_fwd Tc:MdmToLps_00hr30minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_forward 0 891 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor2%20%28t3%20Subject2%29.CNhs13381.12798-136F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12798-136F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr30minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF103MPW MCF-7 RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in MCF-7 from ENCODE 3 (ENCFF103MPW) 0 892 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of RFX5 in MCF-7 from ENCODE 3 (ENCFF103MPW)\ parent encTfChipPk off\ shortLabel MCF-7 RFX5\ subGroups cellType=MCF-7 factor=RFX5\ track encTfChipPkENCFF103MPW\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_tpm_rev Tc:MdmToLps_00hr30minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_reverse 1 892 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor2%20%28t3%20Subject2%29.CNhs13381.12798-136F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12798-136F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr30minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_ctss_rev Tc:MdmToLps_00hr30minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_reverse 0 892 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor2%20%28t3%20Subject2%29.CNhs13381.12798-136F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12798-136F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr30minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF220RUS MCF-7 SIN3A narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in MCF-7 from ENCODE 3 (ENCFF220RUS) 0 893 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of SIN3A in MCF-7 from ENCODE 3 (ENCFF220RUS)\ parent encTfChipPk off\ shortLabel MCF-7 SIN3A\ subGroups cellType=MCF-7 factor=SIN3A\ track encTfChipPkENCFF220RUS\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_tpm_fwd Tc:MdmToLps_00hr30minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_forward 1 893 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor3%20%28t3%20Subject3%29.CNhs13176.12896-137H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12896-137H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr30minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_ctss_fwd Tc:MdmToLps_00hr30minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_forward 0 893 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor3%20%28t3%20Subject3%29.CNhs13176.12896-137H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12896-137H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr30minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF441UHA MCF-7 SIX4 narrowPeak Transcription Factor ChIP-seq Peaks of SIX4 in MCF-7 from ENCODE 3 (ENCFF441UHA) 0 894 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of SIX4 in MCF-7 from ENCODE 3 (ENCFF441UHA)\ parent encTfChipPk off\ shortLabel MCF-7 SIX4\ subGroups cellType=MCF-7 factor=SIX4\ track encTfChipPkENCFF441UHA\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_tpm_rev Tc:MdmToLps_00hr30minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_reverse 1 894 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor3%20%28t3%20Subject3%29.CNhs13176.12896-137H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12896-137H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr30minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_ctss_rev Tc:MdmToLps_00hr30minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_reverse 0 894 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor3%20%28t3%20Subject3%29.CNhs13176.12896-137H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12896-137H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr30minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF618JNX MCF-7 SMARCA5 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA5 in MCF-7 from ENCODE 3 (ENCFF618JNX) 0 895 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of SMARCA5 in MCF-7 from ENCODE 3 (ENCFF618JNX)\ parent encTfChipPk off\ shortLabel MCF-7 SMARCA5\ subGroups cellType=MCF-7 factor=SMARCA5\ track encTfChipPkENCFF618JNX\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_tpm_fwd Tc:MdmToLps_00hr45minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_forward 1 895 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor2%20%28t4%20Subject2%29.CNhs13382.12799-136F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12799-136F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr45minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_ctss_fwd Tc:MdmToLps_00hr45minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_forward 0 895 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor2%20%28t4%20Subject2%29.CNhs13382.12799-136F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12799-136F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr45minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF761NKP MCF-7 SMARCE1 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCE1 in MCF-7 from ENCODE 3 (ENCFF761NKP) 0 896 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of SMARCE1 in MCF-7 from ENCODE 3 (ENCFF761NKP)\ parent encTfChipPk off\ shortLabel MCF-7 SMARCE1\ subGroups cellType=MCF-7 factor=SMARCE1\ track encTfChipPkENCFF761NKP\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_tpm_rev Tc:MdmToLps_00hr45minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_reverse 1 896 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor2%20%28t4%20Subject2%29.CNhs13382.12799-136F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12799-136F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr45minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_ctss_rev Tc:MdmToLps_00hr45minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_reverse 0 896 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor2%20%28t4%20Subject2%29.CNhs13382.12799-136F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12799-136F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr45minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF577EMC MCF-7 SP1 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in MCF-7 from ENCODE 3 (ENCFF577EMC) 0 897 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of SP1 in MCF-7 from ENCODE 3 (ENCFF577EMC)\ parent encTfChipPk off\ shortLabel MCF-7 SP1\ subGroups cellType=MCF-7 factor=SP1\ track encTfChipPkENCFF577EMC\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_tpm_fwd Tc:MdmToLps_00hr45minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_forward 1 897 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor3%20%28t4%20Subject3%29.CNhs13177.12897-137H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12897-137H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr45minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_ctss_fwd Tc:MdmToLps_00hr45minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_forward 0 897 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor3%20%28t4%20Subject3%29.CNhs13177.12897-137H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12897-137H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr45minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF275WAD MCF-7 SREBF1 narrowPeak Transcription Factor ChIP-seq Peaks of SREBF1 in MCF-7 from ENCODE 3 (ENCFF275WAD) 0 898 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of SREBF1 in MCF-7 from ENCODE 3 (ENCFF275WAD)\ parent encTfChipPk off\ shortLabel MCF-7 SREBF1\ subGroups cellType=MCF-7 factor=SREBF1\ track encTfChipPkENCFF275WAD\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_tpm_rev Tc:MdmToLps_00hr45minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_reverse 1 898 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor3%20%28t4%20Subject3%29.CNhs13177.12897-137H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12897-137H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr45minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_ctss_rev Tc:MdmToLps_00hr45minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_reverse 0 898 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor3%20%28t4%20Subject3%29.CNhs13177.12897-137H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12897-137H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr45minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF258ZVN MCF-7 SUZ12 narrowPeak Transcription Factor ChIP-seq Peaks of SUZ12 in MCF-7 from ENCODE 3 (ENCFF258ZVN) 0 899 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of SUZ12 in MCF-7 from ENCODE 3 (ENCFF258ZVN)\ parent encTfChipPk off\ shortLabel MCF-7 SUZ12\ subGroups cellType=MCF-7 factor=SUZ12\ track encTfChipPkENCFF258ZVN\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_tpm_fwd Tc:MdmToLps_01hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_forward 1 899 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor2%20%28t5%20Subject2%29.CNhs13383.12800-136G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12800-136G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_ctss_fwd Tc:MdmToLps_01hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_forward 0 899 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor2%20%28t5%20Subject2%29.CNhs13383.12800-136G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12800-136G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF762MGC MCF-7 TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in MCF-7 from ENCODE 3 (ENCFF762MGC) 0 900 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of TAF1 in MCF-7 from ENCODE 3 (ENCFF762MGC)\ parent encTfChipPk off\ shortLabel MCF-7 TAF1\ subGroups cellType=MCF-7 factor=TAF1\ track encTfChipPkENCFF762MGC\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_tpm_rev Tc:MdmToLps_01hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_reverse 1 900 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor2%20%28t5%20Subject2%29.CNhs13383.12800-136G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12800-136G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_ctss_rev Tc:MdmToLps_01hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_reverse 0 900 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor2%20%28t5%20Subject2%29.CNhs13383.12800-136G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12800-136G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF452VLA MCF-7 TRIM22 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM22 in MCF-7 from ENCODE 3 (ENCFF452VLA) 0 901 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of TRIM22 in MCF-7 from ENCODE 3 (ENCFF452VLA)\ parent encTfChipPk off\ shortLabel MCF-7 TRIM22\ subGroups cellType=MCF-7 factor=TRIM22\ track encTfChipPkENCFF452VLA\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_tpm_fwd Tc:MdmToLps_01hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_forward 1 901 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor3%20%28t5%20Subject3%29.CNhs13178.12898-137H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12898-137H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_ctss_fwd Tc:MdmToLps_01hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_forward 0 901 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor3%20%28t5%20Subject3%29.CNhs13178.12898-137H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12898-137H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF589MVU MCF-7 ZBTB1 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB1 in MCF-7 from ENCODE 3 (ENCFF589MVU) 0 902 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB1 in MCF-7 from ENCODE 3 (ENCFF589MVU)\ parent encTfChipPk off\ shortLabel MCF-7 ZBTB1\ subGroups cellType=MCF-7 factor=ZBTB1\ track encTfChipPkENCFF589MVU\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_tpm_rev Tc:MdmToLps_01hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_reverse 1 902 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor3%20%28t5%20Subject3%29.CNhs13178.12898-137H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12898-137H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_ctss_rev Tc:MdmToLps_01hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_reverse 0 902 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor3%20%28t5%20Subject3%29.CNhs13178.12898-137H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12898-137H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF496RVC MCF-7 ZBTB11 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB11 in MCF-7 from ENCODE 3 (ENCFF496RVC) 0 903 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB11 in MCF-7 from ENCODE 3 (ENCFF496RVC)\ parent encTfChipPk off\ shortLabel MCF-7 ZBTB11\ subGroups cellType=MCF-7 factor=ZBTB11\ track encTfChipPkENCFF496RVC\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor2T6Subject2_CNhs13384_tpm_fwd Tc:MdmToLps_01hr20minD2+ bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_forward 1 903 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12801-136G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor2%20%28t6%20Subject2%29.CNhs13384.12801-136G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12801-136G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr20minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor2T6Subject2_CNhs13384_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12801-136G2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor2T6Subject2_CNhs13384_ctss_fwd Tc:MdmToLps_01hr20minD2+ bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_forward 0 903 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12801-136G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor2%20%28t6%20Subject2%29.CNhs13384.12801-136G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12801-136G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr20minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor2T6Subject2_CNhs13384_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12801-136G2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF780WLS MCF-7 ZBTB33 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in MCF-7 from ENCODE 3 (ENCFF780WLS) 0 904 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in MCF-7 from ENCODE 3 (ENCFF780WLS)\ parent encTfChipPk off\ shortLabel MCF-7 ZBTB33\ subGroups cellType=MCF-7 factor=ZBTB33\ track encTfChipPkENCFF780WLS\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor2T6Subject2_CNhs13384_tpm_rev Tc:MdmToLps_01hr20minD2- bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_reverse 1 904 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12801-136G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor2%20%28t6%20Subject2%29.CNhs13384.12801-136G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12801-136G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr20minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor2T6Subject2_CNhs13384_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12801-136G2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor2T6Subject2_CNhs13384_ctss_rev Tc:MdmToLps_01hr20minD2- bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_reverse 0 904 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12801-136G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor2%20%28t6%20Subject2%29.CNhs13384.12801-136G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12801-136G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr20minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor2T6Subject2_CNhs13384_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12801-136G2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF932XEU MCF-7 ZBTB40 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB40 in MCF-7 from ENCODE 3 (ENCFF932XEU) 0 905 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB40 in MCF-7 from ENCODE 3 (ENCFF932XEU)\ parent encTfChipPk off\ shortLabel MCF-7 ZBTB40\ subGroups cellType=MCF-7 factor=ZBTB40\ track encTfChipPkENCFF932XEU\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor3T6Subject3_CNhs13179_tpm_fwd Tc:MdmToLps_01hr20minD3+ bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor3 (t6 Subject3)_CNhs13179_12899-137I1_forward 1 905 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12899-137I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor3%20%28t6%20Subject3%29.CNhs13179.12899-137I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor3 (t6 Subject3)_CNhs13179_12899-137I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12899-137I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr20minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor3T6Subject3_CNhs13179_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12899-137I1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor3T6Subject3_CNhs13179_ctss_fwd Tc:MdmToLps_01hr20minD3+ bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor3 (t6 Subject3)_CNhs13179_12899-137I1_forward 0 905 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12899-137I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor3%20%28t6%20Subject3%29.CNhs13179.12899-137I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor3 (t6 Subject3)_CNhs13179_12899-137I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12899-137I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr20minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor3T6Subject3_CNhs13179_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12899-137I1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF794UEM MCF-7 ZBTB7B narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB7B in MCF-7 from ENCODE 3 (ENCFF794UEM) 0 906 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB7B in MCF-7 from ENCODE 3 (ENCFF794UEM)\ parent encTfChipPk off\ shortLabel MCF-7 ZBTB7B\ subGroups cellType=MCF-7 factor=ZBTB7B\ track encTfChipPkENCFF794UEM\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor3T6Subject3_CNhs13179_tpm_rev Tc:MdmToLps_01hr20minD3- bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor3 (t6 Subject3)_CNhs13179_12899-137I1_reverse 1 906 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12899-137I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor3%20%28t6%20Subject3%29.CNhs13179.12899-137I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor3 (t6 Subject3)_CNhs13179_12899-137I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12899-137I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr20minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor3T6Subject3_CNhs13179_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12899-137I1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor3T6Subject3_CNhs13179_ctss_rev Tc:MdmToLps_01hr20minD3- bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor3 (t6 Subject3)_CNhs13179_12899-137I1_reverse 0 906 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12899-137I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor3%20%28t6%20Subject3%29.CNhs13179.12899-137I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor3 (t6 Subject3)_CNhs13179_12899-137I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12899-137I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr20minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor3T6Subject3_CNhs13179_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12899-137I1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF775BWJ MCF-7 ZFX narrowPeak Transcription Factor ChIP-seq Peaks of ZFX in MCF-7 from ENCODE 3 (ENCFF775BWJ) 0 907 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZFX in MCF-7 from ENCODE 3 (ENCFF775BWJ)\ parent encTfChipPk off\ shortLabel MCF-7 ZFX\ subGroups cellType=MCF-7 factor=ZFX\ track encTfChipPkENCFF775BWJ\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_tpm_fwd Tc:MdmToLps_02hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_forward 1 907 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor2%20%28t8%20Subject2%29.CNhs13386.12803-136G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12803-136G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_ctss_fwd Tc:MdmToLps_02hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_forward 0 907 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor2%20%28t8%20Subject2%29.CNhs13386.12803-136G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12803-136G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF694ZRC MCF-7 ZHX2 narrowPeak Transcription Factor ChIP-seq Peaks of ZHX2 in MCF-7 from ENCODE 3 (ENCFF694ZRC) 0 908 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZHX2 in MCF-7 from ENCODE 3 (ENCFF694ZRC)\ parent encTfChipPk off\ shortLabel MCF-7 ZHX2\ subGroups cellType=MCF-7 factor=ZHX2\ track encTfChipPkENCFF694ZRC\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_tpm_rev Tc:MdmToLps_02hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_reverse 1 908 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor2%20%28t8%20Subject2%29.CNhs13386.12803-136G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12803-136G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_ctss_rev Tc:MdmToLps_02hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_reverse 0 908 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor2%20%28t8%20Subject2%29.CNhs13386.12803-136G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12803-136G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF687REM MCF-7 ZKSCAN1 narrowPeak Transcription Factor ChIP-seq Peaks of ZKSCAN1 in MCF-7 from ENCODE 3 (ENCFF687REM) 0 909 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZKSCAN1 in MCF-7 from ENCODE 3 (ENCFF687REM)\ parent encTfChipPk off\ shortLabel MCF-7 ZKSCAN1\ subGroups cellType=MCF-7 factor=ZKSCAN1\ track encTfChipPkENCFF687REM\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_tpm_fwd Tc:MdmToLps_02hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_forward 1 909 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor3%20%28t8%20Subject3%29.CNhs13181.12901-137I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12901-137I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_ctss_fwd Tc:MdmToLps_02hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_forward 0 909 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor3%20%28t8%20Subject3%29.CNhs13181.12901-137I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12901-137I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF621ZSK MCF-7 ZNF207 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF207 in MCF-7 from ENCODE 3 (ENCFF621ZSK) 0 910 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF207 in MCF-7 from ENCODE 3 (ENCFF621ZSK)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF207\ subGroups cellType=MCF-7 factor=ZNF207\ track encTfChipPkENCFF621ZSK\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_tpm_rev Tc:MdmToLps_02hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_reverse 1 910 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor3%20%28t8%20Subject3%29.CNhs13181.12901-137I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12901-137I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_ctss_rev Tc:MdmToLps_02hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_reverse 0 910 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor3%20%28t8%20Subject3%29.CNhs13181.12901-137I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12901-137I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF620RPM MCF-7 ZNF217 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF217 in MCF-7 from ENCODE 3 (ENCFF620RPM) 0 911 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF217 in MCF-7 from ENCODE 3 (ENCFF620RPM)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF217 1\ subGroups cellType=MCF-7 factor=ZNF217\ track encTfChipPkENCFF620RPM\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_tpm_fwd Tc:MdmToLps_02hr30minD1+ bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_forward 1 911 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor1%20%28t9%20Subject1%29.CNhs13152.12706-135E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12706-135E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr30minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_ctss_fwd Tc:MdmToLps_02hr30minD1+ bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_forward 0 911 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor1%20%28t9%20Subject1%29.CNhs13152.12706-135E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12706-135E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr30minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF246ZMG MCF-7 ZNF217 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF217 in MCF-7 from ENCODE 3 (ENCFF246ZMG) 0 912 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF217 in MCF-7 from ENCODE 3 (ENCFF246ZMG)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF217 2\ subGroups cellType=MCF-7 factor=ZNF217\ track encTfChipPkENCFF246ZMG\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_tpm_rev Tc:MdmToLps_02hr30minD1- bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_reverse 1 912 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor1%20%28t9%20Subject1%29.CNhs13152.12706-135E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12706-135E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr30minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_ctss_rev Tc:MdmToLps_02hr30minD1- bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_reverse 0 912 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor1%20%28t9%20Subject1%29.CNhs13152.12706-135E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12706-135E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr30minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF619BFO MCF-7 ZNF24 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF24 in MCF-7 from ENCODE 3 (ENCFF619BFO) 0 913 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF24 in MCF-7 from ENCODE 3 (ENCFF619BFO)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF24\ subGroups cellType=MCF-7 factor=ZNF24\ track encTfChipPkENCFF619BFO\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_tpm_fwd Tc:MdmToLps_02hr30minD2+ bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_forward 1 913 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor2%20%28t9%20Subject2%29.CNhs13387.12804-136G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12804-136G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr30minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_ctss_fwd Tc:MdmToLps_02hr30minD2+ bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_forward 0 913 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor2%20%28t9%20Subject2%29.CNhs13387.12804-136G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12804-136G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr30minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF786XJV MCF-7 ZNF444 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF444 in MCF-7 from ENCODE 3 (ENCFF786XJV) 0 914 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF444 in MCF-7 from ENCODE 3 (ENCFF786XJV)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF444\ subGroups cellType=MCF-7 factor=ZNF444\ track encTfChipPkENCFF786XJV\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_tpm_rev Tc:MdmToLps_02hr30minD2- bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_reverse 1 914 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor2%20%28t9%20Subject2%29.CNhs13387.12804-136G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12804-136G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr30minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_ctss_rev Tc:MdmToLps_02hr30minD2- bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_reverse 0 914 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor2%20%28t9%20Subject2%29.CNhs13387.12804-136G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12804-136G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr30minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF675SAG MCF-7 ZNF507 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF507 in MCF-7 from ENCODE 3 (ENCFF675SAG) 0 915 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF507 in MCF-7 from ENCODE 3 (ENCFF675SAG)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF507\ subGroups cellType=MCF-7 factor=ZNF507\ track encTfChipPkENCFF675SAG\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_tpm_fwd Tc:MdmToLps_02hr30minD3+ bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor3 (t9 Subject3)_CNhs13182_12902-137I4_forward 1 915 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor3%20%28t9%20Subject3%29.CNhs13182.12902-137I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor3 (t9 Subject3)_CNhs13182_12902-137I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12902-137I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr30minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_ctss_fwd Tc:MdmToLps_02hr30minD3+ bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor3 (t9 Subject3)_CNhs13182_12902-137I4_forward 0 915 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor3%20%28t9%20Subject3%29.CNhs13182.12902-137I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor3 (t9 Subject3)_CNhs13182_12902-137I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12902-137I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr30minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF209TEF MCF-7 ZNF512B 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF512B in MCF-7 from ENCODE 3 (ENCFF209TEF) 0 916 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF512B in MCF-7 from ENCODE 3 (ENCFF209TEF)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF512B 1\ subGroups cellType=MCF-7 factor=ZNF512B\ track encTfChipPkENCFF209TEF\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_tpm_rev Tc:MdmToLps_02hr30minD3- bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor3 (t9 Subject3)_CNhs13182_12902-137I4_reverse 1 916 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor3%20%28t9%20Subject3%29.CNhs13182.12902-137I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor3 (t9 Subject3)_CNhs13182_12902-137I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12902-137I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr30minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_ctss_rev Tc:MdmToLps_02hr30minD3- bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor3 (t9 Subject3)_CNhs13182_12902-137I4_reverse 0 916 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor3%20%28t9%20Subject3%29.CNhs13182.12902-137I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor3 (t9 Subject3)_CNhs13182_12902-137I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12902-137I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr30minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF414EYO MCF-7 ZNF512B 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF512B in MCF-7 from ENCODE 3 (ENCFF414EYO) 0 917 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF512B in MCF-7 from ENCODE 3 (ENCFF414EYO)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF512B 2\ subGroups cellType=MCF-7 factor=ZNF512B\ track encTfChipPkENCFF414EYO\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_tpm_fwd Tc:MdmToLps_03hr00minD1+ bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_forward 1 917 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor1%20%28t10%20Subject1%29.CNhs12924.12707-135E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12707-135E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_ctss_fwd Tc:MdmToLps_03hr00minD1+ bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_forward 0 917 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor1%20%28t10%20Subject1%29.CNhs12924.12707-135E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12707-135E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF290LSS MCF-7 ZNF574 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF574 in MCF-7 from ENCODE 3 (ENCFF290LSS) 0 918 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF574 in MCF-7 from ENCODE 3 (ENCFF290LSS)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF574\ subGroups cellType=MCF-7 factor=ZNF574\ track encTfChipPkENCFF290LSS\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_tpm_rev Tc:MdmToLps_03hr00minD1- bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_reverse 1 918 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor1%20%28t10%20Subject1%29.CNhs12924.12707-135E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12707-135E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_ctss_rev Tc:MdmToLps_03hr00minD1- bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_reverse 0 918 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor1%20%28t10%20Subject1%29.CNhs12924.12707-135E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12707-135E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF306PBX MCF-7 ZNF579 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF579 in MCF-7 from ENCODE 3 (ENCFF306PBX) 0 919 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF579 in MCF-7 from ENCODE 3 (ENCFF306PBX)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF579\ subGroups cellType=MCF-7 factor=ZNF579\ track encTfChipPkENCFF306PBX\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_tpm_fwd Tc:MdmToLps_03hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_forward 1 919 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor2%20%28t10%20Subject2%29.CNhs13388.12805-136G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12805-136G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_ctss_fwd Tc:MdmToLps_03hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_forward 0 919 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor2%20%28t10%20Subject2%29.CNhs13388.12805-136G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12805-136G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF720PZA MCF-7 ZNF592 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF592 in MCF-7 from ENCODE 3 (ENCFF720PZA) 0 920 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF592 in MCF-7 from ENCODE 3 (ENCFF720PZA)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF592 1\ subGroups cellType=MCF-7 factor=ZNF592\ track encTfChipPkENCFF720PZA\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_tpm_rev Tc:MdmToLps_03hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_reverse 1 920 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor2%20%28t10%20Subject2%29.CNhs13388.12805-136G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12805-136G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_ctss_rev Tc:MdmToLps_03hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_reverse 0 920 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor2%20%28t10%20Subject2%29.CNhs13388.12805-136G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12805-136G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF541HRT MCF-7 ZNF592 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF592 in MCF-7 from ENCODE 3 (ENCFF541HRT) 0 921 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF592 in MCF-7 from ENCODE 3 (ENCFF541HRT)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF592 2\ subGroups cellType=MCF-7 factor=ZNF592\ track encTfChipPkENCFF541HRT\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_tpm_fwd Tc:MdmToLps_03hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_forward 1 921 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor3%20%28t10%20Subject3%29.CNhs13183.12903-137I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12903-137I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_ctss_fwd Tc:MdmToLps_03hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_forward 0 921 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor3%20%28t10%20Subject3%29.CNhs13183.12903-137I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12903-137I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF329QYZ MCF-7 ZNF687 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF687 in MCF-7 from ENCODE 3 (ENCFF329QYZ) 0 922 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF687 in MCF-7 from ENCODE 3 (ENCFF329QYZ)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF687\ subGroups cellType=MCF-7 factor=ZNF687\ track encTfChipPkENCFF329QYZ\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_tpm_rev Tc:MdmToLps_03hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_reverse 1 922 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5 regulation 0 bigDataUrl 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strand=forward\ track MonocytederivedMacrophagesResponseToLPS04hrDonor3T12Subject3_CNhs13185_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12905-137I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF875HHT MCF_10A POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in MCF_10A from ENCODE 3 (ENCFF875HHT) 0 930 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in MCF_10A from ENCODE 3 (ENCFF875HHT)\ parent encTfChipPk off\ shortLabel MCF_10A POLR2A 2\ subGroups cellType=MCF_10A factor=POLR2A\ track encTfChipPkENCFF875HHT\ MonocytederivedMacrophagesResponseToLPS04hrDonor3T12Subject3_CNhs13185_tpm_rev Tc:MdmToLps_04hrD3- bigWig Monocyte-derived macrophages response to LPS, 04hr, donor3 (t12 Subject3)_CNhs13185_12905-137I7_reverse 1 930 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12905-137I7 regulation 0 bigDataUrl 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bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor3%20%28t12%20Subject3%29.CNhs13185.12905-137I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor3 (t12 Subject3)_CNhs13185_12905-137I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12905-137I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_04hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS04hrDonor3T12Subject3_CNhs13185_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12905-137I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF854RVF MCF_10A STAT3 1 narrowPeak Transcription Factor ChIP-seq Peaks of STAT3 in MCF_10A from ENCODE 3 (ENCFF854RVF) 0 931 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of STAT3 in MCF_10A from ENCODE 3 (ENCFF854RVF)\ parent encTfChipPk off\ shortLabel MCF_10A STAT3 1\ subGroups cellType=MCF_10A factor=STAT3\ track encTfChipPkENCFF854RVF\ MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_tpm_fwd Tc:MdmToLps_05hrD1+ bigWig Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_forward 1 931 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor1%20%28t13%20Subject1%29.CNhs13155.12710-135F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12710-135F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_05hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track 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strand=forward\ track MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF199CQN MCF_10A STAT3 2 narrowPeak Transcription Factor ChIP-seq Peaks of STAT3 in MCF_10A from ENCODE 3 (ENCFF199CQN) 0 932 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of STAT3 in MCF_10A from ENCODE 3 (ENCFF199CQN)\ parent encTfChipPk off\ shortLabel MCF_10A STAT3 2\ subGroups cellType=MCF_10A factor=STAT3\ track encTfChipPkENCFF199CQN\ MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_tpm_rev Tc:MdmToLps_05hrD1- bigWig Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_reverse 1 932 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor1%20%28t13%20Subject1%29.CNhs13155.12710-135F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12710-135F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_05hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_ctss_rev Tc:MdmToLps_05hrD1- bigWig Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_reverse 0 932 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor1%20%28t13%20Subject1%29.CNhs13155.12710-135F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12710-135F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_05hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF014OJI MCF_10A STAT3 3 narrowPeak Transcription Factor ChIP-seq Peaks of STAT3 in MCF_10A from ENCODE 3 (ENCFF014OJI) 0 933 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of STAT3 in MCF_10A from ENCODE 3 (ENCFF014OJI)\ parent encTfChipPk off\ shortLabel MCF_10A STAT3 3\ subGroups cellType=MCF_10A factor=STAT3\ track encTfChipPkENCFF014OJI\ MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_tpm_fwd Tc:MdmToLps_05hrD2+ bigWig Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_forward 1 933 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor2%20%28t13%20Subject2%29.CNhs13392.12808-136G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12808-136G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_05hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_ctss_fwd Tc:MdmToLps_05hrD2+ bigWig Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_forward 0 933 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor2%20%28t13%20Subject2%29.CNhs13392.12808-136G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12808-136G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_05hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF825ZYC MM.1S CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in MM.1S from ENCODE 3 (ENCFF825ZYC) 0 934 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in MM.1S from ENCODE 3 (ENCFF825ZYC)\ parent encTfChipPk off\ shortLabel MM.1S CTCF\ subGroups cellType=MM_1S factor=CTCF\ track encTfChipPkENCFF825ZYC\ MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_tpm_rev Tc:MdmToLps_05hrD2- bigWig Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_reverse 1 934 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor2%20%28t13%20Subject2%29.CNhs13392.12808-136G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12808-136G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_05hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_ctss_rev Tc:MdmToLps_05hrD2- bigWig Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_reverse 0 934 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor2%20%28t13%20Subject2%29.CNhs13392.12808-136G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12808-136G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_05hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF253WCQ MM.1S EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in MM.1S from ENCODE 3 (ENCFF253WCQ) 0 935 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in MM.1S from ENCODE 3 (ENCFF253WCQ)\ parent encTfChipPk off\ shortLabel MM.1S EZH2\ subGroups cellType=MM_1S factor=EZH2\ track encTfChipPkENCFF253WCQ\ MonocytederivedMacrophagesResponseToLPS05hrDonor3T13Subject3_CNhs13186_tpm_fwd Tc:MdmToLps_05hrD3+ bigWig Monocyte-derived macrophages response to LPS, 05hr, donor3 (t13 Subject3)_CNhs13186_12906-137I8_forward 1 935 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12906-137I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor3%20%28t13%20Subject3%29.CNhs13186.12906-137I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor3 (t13 Subject3)_CNhs13186_12906-137I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12906-137I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_05hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS05hrDonor3T13Subject3_CNhs13186_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12906-137I8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS05hrDonor3T13Subject3_CNhs13186_ctss_fwd Tc:MdmToLps_05hrD3+ bigWig Monocyte-derived macrophages response to LPS, 05hr, donor3 (t13 Subject3)_CNhs13186_12906-137I8_forward 0 935 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12906-137I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor3%20%28t13%20Subject3%29.CNhs13186.12906-137I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor3 (t13 Subject3)_CNhs13186_12906-137I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12906-137I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_05hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS05hrDonor3T13Subject3_CNhs13186_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12906-137I8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF456PDQ NB4 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in NB4 from ENCODE 3 (ENCFF456PDQ) 0 936 85 112 255 170 183 255 0 0 0 regulation 1 color 85,112,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in NB4 from ENCODE 3 (ENCFF456PDQ)\ parent encTfChipPk off\ shortLabel NB4 CTCF\ subGroups cellType=NB4 factor=CTCF\ track encTfChipPkENCFF456PDQ\ MonocytederivedMacrophagesResponseToLPS05hrDonor3T13Subject3_CNhs13186_tpm_rev Tc:MdmToLps_05hrD3- bigWig Monocyte-derived macrophages response to LPS, 05hr, donor3 (t13 Subject3)_CNhs13186_12906-137I8_reverse 1 936 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12906-137I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor3%20%28t13%20Subject3%29.CNhs13186.12906-137I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor3 (t13 Subject3)_CNhs13186_12906-137I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12906-137I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_05hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS05hrDonor3T13Subject3_CNhs13186_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12906-137I8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS05hrDonor3T13Subject3_CNhs13186_ctss_rev Tc:MdmToLps_05hrD3- bigWig Monocyte-derived macrophages response to LPS, 05hr, donor3 (t13 Subject3)_CNhs13186_12906-137I8_reverse 0 936 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12906-137I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor3%20%28t13%20Subject3%29.CNhs13186.12906-137I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor3 (t13 Subject3)_CNhs13186_12906-137I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12906-137I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_05hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS05hrDonor3T13Subject3_CNhs13186_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12906-137I8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF259KAD NCI-H929 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in NCI-H929 from ENCODE 3 (ENCFF259KAD) 0 937 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in NCI-H929 from ENCODE 3 (ENCFF259KAD)\ parent encTfChipPk off\ shortLabel NCI-H929 CTCF\ subGroups cellType=NCI-H929 factor=CTCF\ track encTfChipPkENCFF259KAD\ MonocytederivedMacrophagesResponseToLPS08hrDonor1T16Subject1_CNhs12927_tpm_fwd Tc:MdmToLps_08hrD1+ bigWig Monocyte-derived macrophages response to LPS, 08hr, donor1 (t16 Subject1)_CNhs12927_12713-135F4_forward 1 937 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12713-135F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor1%20%28t16%20Subject1%29.CNhs12927.12713-135F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor1 (t16 Subject1)_CNhs12927_12713-135F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12713-135F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_08hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS08hrDonor1T16Subject1_CNhs12927_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12713-135F4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS08hrDonor1T16Subject1_CNhs12927_ctss_fwd Tc:MdmToLps_08hrD1+ bigWig Monocyte-derived macrophages response to LPS, 08hr, donor1 (t16 Subject1)_CNhs12927_12713-135F4_forward 0 937 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12713-135F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor1%20%28t16%20Subject1%29.CNhs12927.12713-135F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor1 (t16 Subject1)_CNhs12927_12713-135F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12713-135F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_08hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS08hrDonor1T16Subject1_CNhs12927_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12713-135F4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF226OCL NT2/D1 YY1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in NT2/D1 from ENCODE 3 (ENCFF226OCL) 0 938 255 173 85 255 214 170 0 0 0 regulation 1 color 255,173,85\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in NT2/D1 from ENCODE 3 (ENCFF226OCL)\ parent encTfChipPk off\ shortLabel NT2/D1 YY1\ subGroups cellType=NT2_D1 factor=YY1\ track encTfChipPkENCFF226OCL\ MonocytederivedMacrophagesResponseToLPS08hrDonor1T16Subject1_CNhs12927_tpm_rev Tc:MdmToLps_08hrD1- bigWig Monocyte-derived macrophages response to LPS, 08hr, donor1 (t16 Subject1)_CNhs12927_12713-135F4_reverse 1 938 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12713-135F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor1%20%28t16%20Subject1%29.CNhs12927.12713-135F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor1 (t16 Subject1)_CNhs12927_12713-135F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12713-135F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_08hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS08hrDonor1T16Subject1_CNhs12927_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12713-135F4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS08hrDonor1T16Subject1_CNhs12927_ctss_rev Tc:MdmToLps_08hrD1- bigWig Monocyte-derived macrophages response to LPS, 08hr, donor1 (t16 Subject1)_CNhs12927_12713-135F4_reverse 0 938 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12713-135F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor1%20%28t16%20Subject1%29.CNhs12927.12713-135F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor1 (t16 Subject1)_CNhs12927_12713-135F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12713-135F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_08hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS08hrDonor1T16Subject1_CNhs12927_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12713-135F4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF597KMH NT2/D1 ZNF274 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF274 in NT2/D1 from ENCODE 3 (ENCFF597KMH) 0 939 255 173 85 255 214 170 0 0 0 regulation 1 color 255,173,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF274 in NT2/D1 from ENCODE 3 (ENCFF597KMH)\ parent encTfChipPk off\ shortLabel NT2/D1 ZNF274\ subGroups cellType=NT2_D1 factor=ZNF274\ track encTfChipPkENCFF597KMH\ MonocytederivedMacrophagesResponseToLPS08hrDonor2T16Subject2_CNhs13395_tpm_fwd Tc:MdmToLps_08hrD2+ bigWig Monocyte-derived macrophages response to LPS, 08hr, donor2 (t16 Subject2)_CNhs13395_12811-136H3_forward 1 939 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12811-136H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor2%20%28t16%20Subject2%29.CNhs13395.12811-136H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor2 (t16 Subject2)_CNhs13395_12811-136H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12811-136H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_08hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track 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strand=forward\ track MonocytederivedMacrophagesResponseToLPS08hrDonor2T16Subject2_CNhs13395_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12811-136H3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF713PIC OCI-LY1 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in OCI-LY1 from ENCODE 3 (ENCFF713PIC) 0 940 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in OCI-LY1 from ENCODE 3 (ENCFF713PIC)\ parent encTfChipPk off\ shortLabel OCI-LY1 CTCF\ subGroups cellType=OCI-LY1 factor=CTCF\ track encTfChipPkENCFF713PIC\ MonocytederivedMacrophagesResponseToLPS08hrDonor2T16Subject2_CNhs13395_tpm_rev Tc:MdmToLps_08hrD2- bigWig Monocyte-derived macrophages response to LPS, 08hr, donor2 (t16 Subject2)_CNhs13395_12811-136H3_reverse 1 940 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12811-136H3 regulation 0 bigDataUrl 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bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor2%20%28t16%20Subject2%29.CNhs13395.12811-136H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor2 (t16 Subject2)_CNhs13395_12811-136H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12811-136H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_08hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS08hrDonor2T16Subject2_CNhs13395_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12811-136H3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF520VKN OCI-LY1 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in OCI-LY1 from ENCODE 3 (ENCFF520VKN) 0 941 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in OCI-LY1 from ENCODE 3 (ENCFF520VKN)\ parent encTfChipPk off\ shortLabel OCI-LY1 EZH2\ subGroups cellType=OCI-LY1 factor=EZH2\ track encTfChipPkENCFF520VKN\ MonocytederivedMacrophagesResponseToLPS08hrDonor3T16Subject3_CNhs13326_tpm_fwd Tc:MdmToLps_08hrD3+ bigWig Monocyte-derived macrophages response to LPS, 08hr, donor3 (t16 Subject3)_CNhs13326_12909-138A2_forward 1 941 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12909-138A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor3%20%28t16%20Subject3%29.CNhs13326.12909-138A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor3 (t16 Subject3)_CNhs13326_12909-138A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12909-138A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_08hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS08hrDonor3T16Subject3_CNhs13326_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12909-138A2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS08hrDonor3T16Subject3_CNhs13326_ctss_fwd Tc:MdmToLps_08hrD3+ bigWig Monocyte-derived macrophages response to LPS, 08hr, donor3 (t16 Subject3)_CNhs13326_12909-138A2_forward 0 941 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12909-138A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor3%20%28t16%20Subject3%29.CNhs13326.12909-138A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor3 (t16 Subject3)_CNhs13326_12909-138A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12909-138A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_08hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS08hrDonor3T16Subject3_CNhs13326_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12909-138A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF588MSD OCI-LY3 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in OCI-LY3 from ENCODE 3 (ENCFF588MSD) 0 942 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in OCI-LY3 from ENCODE 3 (ENCFF588MSD)\ parent encTfChipPk off\ shortLabel OCI-LY3 CTCF\ subGroups cellType=OCI-LY3 factor=CTCF\ track encTfChipPkENCFF588MSD\ MonocytederivedMacrophagesResponseToLPS08hrDonor3T16Subject3_CNhs13326_tpm_rev Tc:MdmToLps_08hrD3- bigWig Monocyte-derived macrophages response to LPS, 08hr, donor3 (t16 Subject3)_CNhs13326_12909-138A2_reverse 1 942 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12909-138A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor3%20%28t16%20Subject3%29.CNhs13326.12909-138A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor3 (t16 Subject3)_CNhs13326_12909-138A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12909-138A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_08hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS08hrDonor3T16Subject3_CNhs13326_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12909-138A2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS08hrDonor3T16Subject3_CNhs13326_ctss_rev Tc:MdmToLps_08hrD3- bigWig Monocyte-derived macrophages response to LPS, 08hr, donor3 (t16 Subject3)_CNhs13326_12909-138A2_reverse 0 942 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12909-138A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor3%20%28t16%20Subject3%29.CNhs13326.12909-138A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor3 (t16 Subject3)_CNhs13326_12909-138A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12909-138A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_08hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS08hrDonor3T16Subject3_CNhs13326_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12909-138A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF186NOM OCI-LY7 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in OCI-LY7 from ENCODE 3 (ENCFF186NOM) 0 943 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in OCI-LY7 from ENCODE 3 (ENCFF186NOM)\ parent encTfChipPk off\ shortLabel OCI-LY7 CTCF\ subGroups cellType=OCI-LY7 factor=CTCF\ track encTfChipPkENCFF186NOM\ MonocytederivedMacrophagesResponseToLPS10hrDonor2T17Subject2_CNhs13396_tpm_fwd Tc:MdmToLps_10hrD2+ bigWig Monocyte-derived macrophages response to LPS, 10hr, donor2 (t17 Subject2)_CNhs13396_12812-136H4_forward 1 943 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12812-136H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor2%20%28t17%20Subject2%29.CNhs13396.12812-136H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor2 (t17 Subject2)_CNhs13396_12812-136H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12812-136H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_10hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS10hrDonor2T17Subject2_CNhs13396_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12812-136H4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS10hrDonor2T17Subject2_CNhs13396_ctss_fwd Tc:MdmToLps_10hrD2+ bigWig Monocyte-derived macrophages response to LPS, 10hr, donor2 (t17 Subject2)_CNhs13396_12812-136H4_forward 0 943 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12812-136H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor2%20%28t17%20Subject2%29.CNhs13396.12812-136H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor2 (t17 Subject2)_CNhs13396_12812-136H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12812-136H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_10hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS10hrDonor2T17Subject2_CNhs13396_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12812-136H4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF232FXZ PC-3 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in PC-3 from ENCODE 3 (ENCFF232FXZ) 0 944 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in PC-3 from ENCODE 3 (ENCFF232FXZ)\ parent encTfChipPk off\ shortLabel PC-3 CTCF\ subGroups cellType=PC-3 factor=CTCF\ track encTfChipPkENCFF232FXZ\ MonocytederivedMacrophagesResponseToLPS10hrDonor2T17Subject2_CNhs13396_tpm_rev Tc:MdmToLps_10hrD2- bigWig Monocyte-derived macrophages response to LPS, 10hr, donor2 (t17 Subject2)_CNhs13396_12812-136H4_reverse 1 944 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12812-136H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor2%20%28t17%20Subject2%29.CNhs13396.12812-136H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor2 (t17 Subject2)_CNhs13396_12812-136H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12812-136H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_10hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS10hrDonor2T17Subject2_CNhs13396_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12812-136H4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS10hrDonor2T17Subject2_CNhs13396_ctss_rev Tc:MdmToLps_10hrD2- bigWig Monocyte-derived macrophages response to LPS, 10hr, donor2 (t17 Subject2)_CNhs13396_12812-136H4_reverse 0 944 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12812-136H4 regulation 0 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shortLabel PFSK-1 TAF1\ subGroups cellType=PFSK-1 factor=TAF1\ track encTfChipPkENCFF213CYP\ MonocytederivedMacrophagesResponseToLPS12hrDonor2T18Subject2_CNhs13397_tpm_fwd Tc:MdmToLps_12hrD2+ bigWig Monocyte-derived macrophages response to LPS, 12hr, donor2 (t18 Subject2)_CNhs13397_12813-136H5_forward 1 949 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12813-136H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor2%20%28t18%20Subject2%29.CNhs13397.12813-136H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor2 (t18 Subject2)_CNhs13397_12813-136H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12813-136H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_12hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track 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strand=forward\ track MonocytederivedMacrophagesResponseToLPS12hrDonor3T18Subject3_CNhs13328_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12911-138A4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF171XUS Panc1 TCF7L2 narrowPeak Transcription Factor ChIP-seq Peaks of TCF7L2 in Panc1 from ENCODE 3 (ENCFF171XUS) 0 952 255 141 85 255 198 170 0 0 0 regulation 1 color 255,141,85\ longLabel Transcription Factor ChIP-seq Peaks of TCF7L2 in Panc1 from ENCODE 3 (ENCFF171XUS)\ parent encTfChipPk off\ shortLabel Panc1 TCF7L2\ subGroups cellType=Panc1 factor=TCF7L2\ track encTfChipPkENCFF171XUS\ MonocytederivedMacrophagesResponseToLPS12hrDonor3T18Subject3_CNhs13328_tpm_rev Tc:MdmToLps_12hrD3- bigWig Monocyte-derived macrophages response to LPS, 12hr, donor3 (t18 Subject3)_CNhs13328_12911-138A4_reverse 1 952 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12911-138A4 regulation 0 bigDataUrl 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(ENCFF509NRY)\ parent encTfChipPk off\ shortLabel parathyAdn CTCF 1\ subGroups cellType=Parathyroid_adenoma factor=CTCF\ track encTfChipPkENCFF509NRY\ MonocytederivedMacrophagesResponseToLPS14hrDonor1T19Subject1_CNhs12929_tpm_fwd Tc:MdmToLps_14hrD1+ bigWig Monocyte-derived macrophages response to LPS, 14hr, donor1 (t19 Subject1)_CNhs12929_12716-135F7_forward 1 953 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12716-135F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor1%20%28t19%20Subject1%29.CNhs12929.12716-135F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor1 (t19 Subject1)_CNhs12929_12716-135F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12716-135F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_14hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track 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strand=forward\ track MonocytederivedMacrophagesResponseToLPS14hrDonor1T19Subject1_CNhs12929_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12716-135F7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF177UJN parathyAdn CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Parathyroid_adenoma from ENCODE 3 (ENCFF177UJN) 0 954 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in Parathyroid_adenoma from ENCODE 3 (ENCFF177UJN)\ parent encTfChipPk off\ shortLabel parathyAdn CTCF 2\ subGroups cellType=Parathyroid_adenoma factor=CTCF\ track encTfChipPkENCFF177UJN\ MonocytederivedMacrophagesResponseToLPS14hrDonor1T19Subject1_CNhs12929_tpm_rev Tc:MdmToLps_14hrD1- bigWig Monocyte-derived macrophages response to LPS, 14hr, donor1 (t19 Subject1)_CNhs12929_12716-135F7_reverse 1 954 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12716-135F7 regulation 0 bigDataUrl 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bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor1%20%28t19%20Subject1%29.CNhs12929.12716-135F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor1 (t19 Subject1)_CNhs12929_12716-135F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12716-135F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_14hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS14hrDonor1T19Subject1_CNhs12929_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12716-135F7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF805FIF PeyerPatch CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Peyer's_patch from ENCODE 3 (ENCFF805FIF) 0 955 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in Peyer's_patch from ENCODE 3 (ENCFF805FIF)\ parent encTfChipPk off\ shortLabel PeyerPatch CTCF 1\ subGroups cellType=Peyers_patch factor=CTCF\ track encTfChipPkENCFF805FIF\ MonocytederivedMacrophagesResponseToLPS14hrDonor2T19Subject2_CNhs13398_tpm_fwd Tc:MdmToLps_14hrD2+ bigWig Monocyte-derived macrophages response to LPS, 14hr, donor2 (t19 Subject2)_CNhs13398_12814-136H6_forward 1 955 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12814-136H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor2%20%28t19%20Subject2%29.CNhs13398.12814-136H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor2 (t19 Subject2)_CNhs13398_12814-136H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12814-136H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_14hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track 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strand=forward\ track MonocytederivedMacrophagesResponseToLPS14hrDonor2T19Subject2_CNhs13398_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12814-136H6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF579XTC PeyerPatch CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Peyer's_patch from ENCODE 3 (ENCFF579XTC) 0 956 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in Peyer's_patch from ENCODE 3 (ENCFF579XTC)\ parent encTfChipPk off\ shortLabel PeyerPatch CTCF 2\ subGroups cellType=Peyers_patch factor=CTCF\ track encTfChipPkENCFF579XTC\ MonocytederivedMacrophagesResponseToLPS14hrDonor2T19Subject2_CNhs13398_tpm_rev Tc:MdmToLps_14hrD2- bigWig Monocyte-derived macrophages response to LPS, 14hr, donor2 (t19 Subject2)_CNhs13398_12814-136H6_reverse 1 956 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12814-136H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor2%20%28t19%20Subject2%29.CNhs13398.12814-136H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor2 (t19 Subject2)_CNhs13398_12814-136H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12814-136H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_14hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS14hrDonor2T19Subject2_CNhs13398_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12814-136H6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS14hrDonor2T19Subject2_CNhs13398_ctss_rev Tc:MdmToLps_14hrD2- bigWig Monocyte-derived macrophages response to LPS, 14hr, donor2 (t19 Subject2)_CNhs13398_12814-136H6_reverse 0 956 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12814-136H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor2%20%28t19%20Subject2%29.CNhs13398.12814-136H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor2 (t19 Subject2)_CNhs13398_12814-136H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12814-136H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_14hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS14hrDonor2T19Subject2_CNhs13398_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12814-136H6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF072UWP PeyerPatch CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Peyer's_patch from ENCODE 3 (ENCFF072UWP) 0 957 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in Peyer's_patch from ENCODE 3 (ENCFF072UWP)\ parent encTfChipPk off\ shortLabel PeyerPatch CTCF 3\ subGroups cellType=Peyers_patch factor=CTCF\ track encTfChipPkENCFF072UWP\ MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_tpm_fwd Tc:MdmToLps_14hrD3+ bigWig Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_forward 1 957 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor3%20%28t19%20Subject3%29.CNhs13329.12912-138A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12912-138A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_14hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_ctss_fwd Tc:MdmToLps_14hrD3+ bigWig Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_forward 0 957 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor3%20%28t19%20Subject3%29.CNhs13329.12912-138A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12912-138A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_14hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF486UBE PeyerPatch CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Peyer's_patch from ENCODE 3 (ENCFF486UBE) 0 958 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in Peyer's_patch from ENCODE 3 (ENCFF486UBE)\ parent encTfChipPk off\ shortLabel PeyerPatch CTCF 4\ subGroups cellType=Peyers_patch factor=CTCF\ track encTfChipPkENCFF486UBE\ MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_tpm_rev Tc:MdmToLps_14hrD3- bigWig Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_reverse 1 958 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor3%20%28t19%20Subject3%29.CNhs13329.12912-138A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12912-138A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_14hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_ctss_rev Tc:MdmToLps_14hrD3- bigWig Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_reverse 0 958 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor3%20%28t19%20Subject3%29.CNhs13329.12912-138A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12912-138A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_14hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF797OLU PeyrPtch POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in Peyer's_patch from ENCODE 3 (ENCFF797OLU) 0 959 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in Peyer's_patch from ENCODE 3 (ENCFF797OLU)\ parent encTfChipPk off\ shortLabel PeyrPtch POLR2A 1\ subGroups cellType=Peyers_patch factor=POLR2A\ track encTfChipPkENCFF797OLU\ MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_tpm_fwd Tc:MdmToLps_16hrD2+ bigWig Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_forward 1 959 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor2%20%28t20%20Subject2%29.CNhs13399.12815-136H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12815-136H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_16hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_ctss_fwd Tc:MdmToLps_16hrD2+ bigWig Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_forward 0 959 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor2%20%28t20%20Subject2%29.CNhs13399.12815-136H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12815-136H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_16hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF563GSK PeyrPtch POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in Peyer's_patch from ENCODE 3 (ENCFF563GSK) 0 960 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in Peyer's_patch from ENCODE 3 (ENCFF563GSK)\ parent encTfChipPk off\ shortLabel PeyrPtch POLR2A 2\ subGroups cellType=Peyers_patch factor=POLR2A\ track encTfChipPkENCFF563GSK\ MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_tpm_rev Tc:MdmToLps_16hrD2- bigWig Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_reverse 1 960 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor2%20%28t20%20Subject2%29.CNhs13399.12815-136H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12815-136H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_16hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_ctss_rev Tc:MdmToLps_16hrD2- bigWig Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_reverse 0 960 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor2%20%28t20%20Subject2%29.CNhs13399.12815-136H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12815-136H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_16hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF273HTX RWPE1 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in RWPE1 from ENCODE 3 (ENCFF273HTX) 0 961 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in RWPE1 from ENCODE 3 (ENCFF273HTX)\ parent encTfChipPk off\ shortLabel RWPE1 CTCF\ subGroups cellType=RWPE1 factor=CTCF\ track encTfChipPkENCFF273HTX\ MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_tpm_fwd Tc:MdmToLps_16hrD3+ bigWig Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_forward 1 961 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor3%20%28t20%20Subject3%29.CNhs13330.12913-138A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12913-138A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_16hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_ctss_fwd Tc:MdmToLps_16hrD3+ bigWig Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_forward 0 961 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor3%20%28t20%20Subject3%29.CNhs13330.12913-138A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12913-138A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_16hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF855KNL RWPE2 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in RWPE2 from ENCODE 3 (ENCFF855KNL) 0 962 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in RWPE2 from ENCODE 3 (ENCFF855KNL)\ parent encTfChipPk off\ shortLabel RWPE2 CTCF\ subGroups cellType=RWPE2 factor=CTCF\ track encTfChipPkENCFF855KNL\ MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_tpm_rev Tc:MdmToLps_16hrD3- bigWig Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_reverse 1 962 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor3%20%28t20%20Subject3%29.CNhs13330.12913-138A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12913-138A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_16hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_ctss_rev Tc:MdmToLps_16hrD3- bigWig Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_reverse 0 962 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor3%20%28t20%20Subject3%29.CNhs13330.12913-138A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12913-138A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_16hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF798HCA Raji POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in Raji from ENCODE 3 (ENCFF798HCA) 0 963 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in Raji from ENCODE 3 (ENCFF798HCA)\ parent encTfChipPk off\ shortLabel Raji POLR2A\ subGroups cellType=Raji factor=POLR2A\ track encTfChipPkENCFF798HCA\ MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_tpm_fwd Tc:MdmToLps_18hrD1+ bigWig Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_forward 1 963 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor1%20%28t21%20Subject1%29.CNhs12814.12718-135F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12718-135F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_18hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_ctss_fwd Tc:MdmToLps_18hrD1+ bigWig Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_forward 0 963 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor1%20%28t21%20Subject1%29.CNhs12814.12718-135F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12718-135F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_18hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF064YWN SH-SY5Y GATA2 narrowPeak Transcription Factor ChIP-seq Peaks of GATA2 in SH-SY5Y from ENCODE 3 (ENCFF064YWN) 0 964 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GATA2 in SH-SY5Y from ENCODE 3 (ENCFF064YWN)\ parent encTfChipPk off\ shortLabel SH-SY5Y GATA2\ subGroups cellType=SH-SY5Y factor=GATA2\ track encTfChipPkENCFF064YWN\ MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_tpm_rev Tc:MdmToLps_18hrD1- bigWig Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_reverse 1 964 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor1%20%28t21%20Subject1%29.CNhs12814.12718-135F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12718-135F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_18hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_ctss_rev Tc:MdmToLps_18hrD1- bigWig Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_reverse 0 964 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor1%20%28t21%20Subject1%29.CNhs12814.12718-135F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12718-135F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_18hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF626MUS SH-SY5Y GATA3 narrowPeak Transcription Factor ChIP-seq Peaks of GATA3 in SH-SY5Y from ENCODE 3 (ENCFF626MUS) 0 965 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GATA3 in SH-SY5Y from ENCODE 3 (ENCFF626MUS)\ parent encTfChipPk off\ shortLabel SH-SY5Y GATA3\ subGroups cellType=SH-SY5Y factor=GATA3\ track encTfChipPkENCFF626MUS\ MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_tpm_fwd Tc:MdmToLps_18hrD2+ bigWig Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_forward 1 965 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor2%20%28t21%20Subject2%29.CNhs13400.12816-136H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12816-136H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_18hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_ctss_fwd Tc:MdmToLps_18hrD2+ bigWig Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_forward 0 965 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor2%20%28t21%20Subject2%29.CNhs13400.12816-136H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12816-136H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_18hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF035WFT SK-N-MC EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in SK-N-MC from ENCODE 3 (ENCFF035WFT) 0 966 176 85 255 215 170 255 0 0 0 regulation 1 color 176,85,255\ longLabel Transcription Factor ChIP-seq Peaks of EZH2 in SK-N-MC from ENCODE 3 (ENCFF035WFT)\ parent encTfChipPk off\ shortLabel SK-N-MC EZH2\ subGroups cellType=SK-N-MC factor=EZH2\ track encTfChipPkENCFF035WFT\ MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_tpm_rev Tc:MdmToLps_18hrD2- bigWig Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_reverse 1 966 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor2%20%28t21%20Subject2%29.CNhs13400.12816-136H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12816-136H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_18hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_ctss_rev Tc:MdmToLps_18hrD2- bigWig Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_reverse 0 966 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor2%20%28t21%20Subject2%29.CNhs13400.12816-136H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12816-136H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_18hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF049UCF SK-N-SH CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in SK-N-SH from ENCODE 3 (ENCFF049UCF) 0 967 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in SK-N-SH from ENCODE 3 (ENCFF049UCF)\ parent encTfChipPk off\ shortLabel SK-N-SH CTCF 1\ subGroups cellType=SK-N-SH factor=CTCF\ track encTfChipPkENCFF049UCF\ MonocytederivedMacrophagesResponseToLPS18hrDonor3T21Subject3_CNhs13331_tpm_fwd Tc:MdmToLps_18hrD3+ bigWig Monocyte-derived macrophages response to LPS, 18hr, donor3 (t21 Subject3)_CNhs13331_12914-138A7_forward 1 967 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12914-138A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor3%20%28t21%20Subject3%29.CNhs13331.12914-138A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor3 (t21 Subject3)_CNhs13331_12914-138A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12914-138A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_18hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS18hrDonor3T21Subject3_CNhs13331_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12914-138A7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS18hrDonor3T21Subject3_CNhs13331_ctss_fwd Tc:MdmToLps_18hrD3+ bigWig Monocyte-derived macrophages response to LPS, 18hr, donor3 (t21 Subject3)_CNhs13331_12914-138A7_forward 0 967 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12914-138A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor3%20%28t21%20Subject3%29.CNhs13331.12914-138A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor3 (t21 Subject3)_CNhs13331_12914-138A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12914-138A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_18hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS18hrDonor3T21Subject3_CNhs13331_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12914-138A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF685KTA SK-N-SH CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in SK-N-SH from ENCODE 3 (ENCFF685KTA) 0 968 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in SK-N-SH from ENCODE 3 (ENCFF685KTA)\ parent encTfChipPk off\ shortLabel SK-N-SH CTCF 2\ subGroups cellType=SK-N-SH factor=CTCF\ track encTfChipPkENCFF685KTA\ MonocytederivedMacrophagesResponseToLPS18hrDonor3T21Subject3_CNhs13331_tpm_rev Tc:MdmToLps_18hrD3- bigWig Monocyte-derived macrophages response to LPS, 18hr, donor3 (t21 Subject3)_CNhs13331_12914-138A7_reverse 1 968 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12914-138A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor3%20%28t21%20Subject3%29.CNhs13331.12914-138A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor3 (t21 Subject3)_CNhs13331_12914-138A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12914-138A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_18hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS18hrDonor3T21Subject3_CNhs13331_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12914-138A7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS18hrDonor3T21Subject3_CNhs13331_ctss_rev Tc:MdmToLps_18hrD3- bigWig Monocyte-derived macrophages response to LPS, 18hr, donor3 (t21 Subject3)_CNhs13331_12914-138A7_reverse 0 968 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12914-138A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor3%20%28t21%20Subject3%29.CNhs13331.12914-138A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor3 (t21 Subject3)_CNhs13331_12914-138A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12914-138A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_18hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS18hrDonor3T21Subject3_CNhs13331_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12914-138A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF540DWT SK-N-SH CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in SK-N-SH from ENCODE 3 (ENCFF540DWT) 0 969 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in SK-N-SH from ENCODE 3 (ENCFF540DWT)\ parent encTfChipPk off\ shortLabel SK-N-SH CTCF 3\ subGroups cellType=SK-N-SH factor=CTCF\ track encTfChipPkENCFF540DWT\ MonocytederivedMacrophagesResponseToLPS20hrDonor1T22Subject1_CNhs12931_tpm_fwd Tc:MdmToLps_20hrD1+ bigWig Monocyte-derived macrophages response to LPS, 20hr, donor1 (t22 Subject1)_CNhs12931_12719-135G1_forward 1 969 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12719-135G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor1%20%28t22%20Subject1%29.CNhs12931.12719-135G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor1 (t22 Subject1)_CNhs12931_12719-135G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12719-135G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_20hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS20hrDonor1T22Subject1_CNhs12931_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12719-135G1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS20hrDonor1T22Subject1_CNhs12931_ctss_fwd Tc:MdmToLps_20hrD1+ bigWig Monocyte-derived macrophages response to LPS, 20hr, donor1 (t22 Subject1)_CNhs12931_12719-135G1_forward 0 969 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12719-135G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor1%20%28t22%20Subject1%29.CNhs12931.12719-135G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor1 (t22 Subject1)_CNhs12931_12719-135G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12719-135G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_20hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS20hrDonor1T22Subject1_CNhs12931_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12719-135G1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF917TPE SK-N-SH IRF3 narrowPeak Transcription Factor ChIP-seq Peaks of IRF3 in SK-N-SH from ENCODE 3 (ENCFF917TPE) 0 970 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of IRF3 in SK-N-SH from ENCODE 3 (ENCFF917TPE)\ parent encTfChipPk off\ shortLabel SK-N-SH IRF3\ subGroups cellType=SK-N-SH factor=IRF3\ track encTfChipPkENCFF917TPE\ MonocytederivedMacrophagesResponseToLPS20hrDonor1T22Subject1_CNhs12931_tpm_rev Tc:MdmToLps_20hrD1- bigWig Monocyte-derived macrophages response to LPS, 20hr, donor1 (t22 Subject1)_CNhs12931_12719-135G1_reverse 1 970 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12719-135G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor1%20%28t22%20Subject1%29.CNhs12931.12719-135G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor1 (t22 Subject1)_CNhs12931_12719-135G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12719-135G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_20hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS20hrDonor1T22Subject1_CNhs12931_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12719-135G1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS20hrDonor1T22Subject1_CNhs12931_ctss_rev Tc:MdmToLps_20hrD1- bigWig Monocyte-derived macrophages response to LPS, 20hr, donor1 (t22 Subject1)_CNhs12931_12719-135G1_reverse 0 970 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12719-135G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor1%20%28t22%20Subject1%29.CNhs12931.12719-135G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor1 (t22 Subject1)_CNhs12931_12719-135G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12719-135G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_20hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS20hrDonor1T22Subject1_CNhs12931_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12719-135G1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF246HKM SK-N-SH JUND 1 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in SK-N-SH from ENCODE 3 (ENCFF246HKM) 0 971 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of JUND in SK-N-SH from ENCODE 3 (ENCFF246HKM)\ parent encTfChipPk off\ shortLabel SK-N-SH JUND 1\ subGroups cellType=SK-N-SH factor=JUND\ track encTfChipPkENCFF246HKM\ MonocytederivedMacrophagesResponseToLPS20hrDonor2T22Subject2_CNhs13401_tpm_fwd Tc:MdmToLps_20hrD2+ bigWig Monocyte-derived macrophages response to LPS, 20hr, donor2 (t22 Subject2)_CNhs13401_12817-136H9_forward 1 971 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12817-136H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor2%20%28t22%20Subject2%29.CNhs13401.12817-136H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor2 (t22 Subject2)_CNhs13401_12817-136H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12817-136H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_20hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS20hrDonor2T22Subject2_CNhs13401_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12817-136H9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS20hrDonor2T22Subject2_CNhs13401_ctss_fwd Tc:MdmToLps_20hrD2+ bigWig Monocyte-derived macrophages response to LPS, 20hr, donor2 (t22 Subject2)_CNhs13401_12817-136H9_forward 0 971 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12817-136H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor2%20%28t22%20Subject2%29.CNhs13401.12817-136H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor2 (t22 Subject2)_CNhs13401_12817-136H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12817-136H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_20hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS20hrDonor2T22Subject2_CNhs13401_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12817-136H9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF187QQB SK-N-SH JUND 2 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in SK-N-SH from ENCODE 3 (ENCFF187QQB) 0 972 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of JUND in SK-N-SH from ENCODE 3 (ENCFF187QQB)\ parent encTfChipPk off\ shortLabel SK-N-SH JUND 2\ subGroups cellType=SK-N-SH factor=JUND\ track encTfChipPkENCFF187QQB\ MonocytederivedMacrophagesResponseToLPS20hrDonor2T22Subject2_CNhs13401_tpm_rev Tc:MdmToLps_20hrD2- bigWig Monocyte-derived macrophages response to LPS, 20hr, donor2 (t22 Subject2)_CNhs13401_12817-136H9_reverse 1 972 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12817-136H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor2%20%28t22%20Subject2%29.CNhs13401.12817-136H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor2 (t22 Subject2)_CNhs13401_12817-136H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12817-136H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_20hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS20hrDonor2T22Subject2_CNhs13401_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12817-136H9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS20hrDonor2T22Subject2_CNhs13401_ctss_rev Tc:MdmToLps_20hrD2- bigWig Monocyte-derived macrophages response to LPS, 20hr, donor2 (t22 Subject2)_CNhs13401_12817-136H9_reverse 0 972 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12817-136H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor2%20%28t22%20Subject2%29.CNhs13401.12817-136H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor2 (t22 Subject2)_CNhs13401_12817-136H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12817-136H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_20hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS20hrDonor2T22Subject2_CNhs13401_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12817-136H9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF116RCK SK-N-SH MXI1 narrowPeak Transcription Factor ChIP-seq Peaks of MXI1 in SK-N-SH from ENCODE 3 (ENCFF116RCK) 0 973 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of MXI1 in SK-N-SH from ENCODE 3 (ENCFF116RCK)\ parent encTfChipPk off\ shortLabel SK-N-SH MXI1\ subGroups cellType=SK-N-SH factor=MXI1\ track encTfChipPkENCFF116RCK\ MonocytederivedMacrophagesResponseToLPS20hrDonor3T22Subject3_CNhs13332_tpm_fwd Tc:MdmToLps_20hrD3+ bigWig Monocyte-derived macrophages response to LPS, 20hr, donor3 (t22 Subject3)_CNhs13332_12915-138A8_forward 1 973 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12915-138A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor3%20%28t22%20Subject3%29.CNhs13332.12915-138A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor3 (t22 Subject3)_CNhs13332_12915-138A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12915-138A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_20hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS20hrDonor3T22Subject3_CNhs13332_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12915-138A8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS20hrDonor3T22Subject3_CNhs13332_ctss_fwd Tc:MdmToLps_20hrD3+ bigWig Monocyte-derived macrophages response to LPS, 20hr, donor3 (t22 Subject3)_CNhs13332_12915-138A8_forward 0 973 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12915-138A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor3%20%28t22%20Subject3%29.CNhs13332.12915-138A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor3 (t22 Subject3)_CNhs13332_12915-138A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12915-138A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_20hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS20hrDonor3T22Subject3_CNhs13332_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12915-138A8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF557OCR SK-N-SH RAD21 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in SK-N-SH from ENCODE 3 (ENCFF557OCR) 0 974 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of RAD21 in SK-N-SH from ENCODE 3 (ENCFF557OCR)\ parent encTfChipPk off\ shortLabel SK-N-SH RAD21\ subGroups cellType=SK-N-SH factor=RAD21\ track encTfChipPkENCFF557OCR\ MonocytederivedMacrophagesResponseToLPS20hrDonor3T22Subject3_CNhs13332_tpm_rev Tc:MdmToLps_20hrD3- bigWig Monocyte-derived macrophages response to LPS, 20hr, donor3 (t22 Subject3)_CNhs13332_12915-138A8_reverse 1 974 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12915-138A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor3%20%28t22%20Subject3%29.CNhs13332.12915-138A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor3 (t22 Subject3)_CNhs13332_12915-138A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12915-138A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_20hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS20hrDonor3T22Subject3_CNhs13332_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12915-138A8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS20hrDonor3T22Subject3_CNhs13332_ctss_rev Tc:MdmToLps_20hrD3- bigWig Monocyte-derived macrophages response to LPS, 20hr, donor3 (t22 Subject3)_CNhs13332_12915-138A8_reverse 0 974 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12915-138A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor3%20%28t22%20Subject3%29.CNhs13332.12915-138A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor3 (t22 Subject3)_CNhs13332_12915-138A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12915-138A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_20hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS20hrDonor3T22Subject3_CNhs13332_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12915-138A8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF073ADA SK-N-SH RCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of RCOR1 in SK-N-SH from ENCODE 3 (ENCFF073ADA) 0 975 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of RCOR1 in SK-N-SH from ENCODE 3 (ENCFF073ADA)\ parent encTfChipPk off\ shortLabel SK-N-SH RCOR1\ subGroups cellType=SK-N-SH factor=RCOR1\ track encTfChipPkENCFF073ADA\ MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_tpm_fwd Tc:MdmToLps_22hrD1+ bigWig Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_forward 1 975 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor1%20%28t23%20Subject1%29.CNhs12815.12720-135G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12720-135G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_22hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_ctss_fwd Tc:MdmToLps_22hrD1+ bigWig Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_forward 0 975 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor1%20%28t23%20Subject1%29.CNhs12815.12720-135G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12720-135G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_22hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF540FXB SK-N-SH REST 1 narrowPeak Transcription Factor ChIP-seq Peaks of REST in SK-N-SH from ENCODE 3 (ENCFF540FXB) 0 976 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of REST in SK-N-SH from ENCODE 3 (ENCFF540FXB)\ parent encTfChipPk off\ shortLabel SK-N-SH REST 1\ subGroups cellType=SK-N-SH factor=REST\ track encTfChipPkENCFF540FXB\ MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_tpm_rev Tc:MdmToLps_22hrD1- bigWig Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_reverse 1 976 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor1%20%28t23%20Subject1%29.CNhs12815.12720-135G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12720-135G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_22hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_ctss_rev Tc:MdmToLps_22hrD1- bigWig Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_reverse 0 976 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor1%20%28t23%20Subject1%29.CNhs12815.12720-135G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12720-135G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_22hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF796YFZ SK-N-SH REST 2 narrowPeak Transcription Factor ChIP-seq Peaks of REST in SK-N-SH from ENCODE 3 (ENCFF796YFZ) 0 977 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of REST in SK-N-SH from ENCODE 3 (ENCFF796YFZ)\ parent encTfChipPk off\ shortLabel SK-N-SH REST 2\ subGroups cellType=SK-N-SH factor=REST\ track encTfChipPkENCFF796YFZ\ MonocytederivedMacrophagesResponseToLPS22hrDonor2T23Subject2_CNhs13402_tpm_fwd Tc:MdmToLps_22hrD2+ bigWig Monocyte-derived macrophages response to LPS, 22hr, donor2 (t23 Subject2)_CNhs13402_12818-136I1_forward 1 977 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12818-136I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor2%20%28t23%20Subject2%29.CNhs13402.12818-136I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor2 (t23 Subject2)_CNhs13402_12818-136I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12818-136I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_22hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS22hrDonor2T23Subject2_CNhs13402_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12818-136I1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS22hrDonor2T23Subject2_CNhs13402_ctss_fwd Tc:MdmToLps_22hrD2+ bigWig Monocyte-derived macrophages response to LPS, 22hr, donor2 (t23 Subject2)_CNhs13402_12818-136I1_forward 0 977 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12818-136I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor2%20%28t23%20Subject2%29.CNhs13402.12818-136I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor2 (t23 Subject2)_CNhs13402_12818-136I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12818-136I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_22hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS22hrDonor2T23Subject2_CNhs13402_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12818-136I1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF502JJJ SK-N-SH RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in SK-N-SH from ENCODE 3 (ENCFF502JJJ) 0 978 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of RFX5 in SK-N-SH from ENCODE 3 (ENCFF502JJJ)\ parent encTfChipPk off\ shortLabel SK-N-SH RFX5\ subGroups cellType=SK-N-SH factor=RFX5\ track encTfChipPkENCFF502JJJ\ MonocytederivedMacrophagesResponseToLPS22hrDonor2T23Subject2_CNhs13402_tpm_rev Tc:MdmToLps_22hrD2- bigWig Monocyte-derived macrophages response to LPS, 22hr, donor2 (t23 Subject2)_CNhs13402_12818-136I1_reverse 1 978 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12818-136I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor2%20%28t23%20Subject2%29.CNhs13402.12818-136I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor2 (t23 Subject2)_CNhs13402_12818-136I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12818-136I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_22hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS22hrDonor2T23Subject2_CNhs13402_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12818-136I1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS22hrDonor2T23Subject2_CNhs13402_ctss_rev Tc:MdmToLps_22hrD2- bigWig Monocyte-derived macrophages response to LPS, 22hr, donor2 (t23 Subject2)_CNhs13402_12818-136I1_reverse 0 978 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12818-136I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor2%20%28t23%20Subject2%29.CNhs13402.12818-136I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor2 (t23 Subject2)_CNhs13402_12818-136I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12818-136I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_22hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS22hrDonor2T23Subject2_CNhs13402_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12818-136I1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF663RUS SK-N-SH SIN3A narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in SK-N-SH from ENCODE 3 (ENCFF663RUS) 0 979 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of SIN3A in SK-N-SH from ENCODE 3 (ENCFF663RUS)\ parent encTfChipPk off\ shortLabel SK-N-SH SIN3A\ subGroups cellType=SK-N-SH factor=SIN3A\ track encTfChipPkENCFF663RUS\ MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_tpm_fwd Tc:MdmToLps_22hrD3+ bigWig Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_forward 1 979 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor3%20%28t23%20Subject3%29.CNhs13333.12916-138A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12916-138A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_22hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_ctss_fwd Tc:MdmToLps_22hrD3+ bigWig Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_forward 0 979 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor3%20%28t23%20Subject3%29.CNhs13333.12916-138A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12916-138A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_22hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF423CTO SK-N-SH TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in SK-N-SH from ENCODE 3 (ENCFF423CTO) 0 980 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of TAF1 in SK-N-SH from ENCODE 3 (ENCFF423CTO)\ parent encTfChipPk off\ shortLabel SK-N-SH TAF1\ subGroups cellType=SK-N-SH factor=TAF1\ track encTfChipPkENCFF423CTO\ MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_tpm_rev Tc:MdmToLps_22hrD3- bigWig Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_reverse 1 980 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor3%20%28t23%20Subject3%29.CNhs13333.12916-138A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12916-138A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_22hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_ctss_rev Tc:MdmToLps_22hrD3- bigWig Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_reverse 0 980 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor3%20%28t23%20Subject3%29.CNhs13333.12916-138A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12916-138A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_22hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF452RZW SK-N-SH USF1 narrowPeak Transcription Factor ChIP-seq Peaks of USF1 in SK-N-SH from ENCODE 3 (ENCFF452RZW) 0 981 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of USF1 in SK-N-SH from ENCODE 3 (ENCFF452RZW)\ parent encTfChipPk off\ shortLabel SK-N-SH USF1\ subGroups cellType=SK-N-SH factor=USF1\ track encTfChipPkENCFF452RZW\ MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_tpm_fwd Tc:MdmToLps_24hrD1+ bigWig Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_forward 1 981 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor1%20%28t24%20Subject1%29.CNhs12932.12721-135G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12721-135G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_24hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_ctss_fwd Tc:MdmToLps_24hrD1+ bigWig Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_forward 0 981 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor1%20%28t24%20Subject1%29.CNhs12932.12721-135G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12721-135G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_24hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF261PAC SK-N-SH USF2 narrowPeak Transcription Factor ChIP-seq Peaks of USF2 in SK-N-SH from ENCODE 3 (ENCFF261PAC) 0 982 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of USF2 in SK-N-SH from ENCODE 3 (ENCFF261PAC)\ parent encTfChipPk off\ shortLabel SK-N-SH USF2\ subGroups cellType=SK-N-SH factor=USF2\ track encTfChipPkENCFF261PAC\ MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_tpm_rev Tc:MdmToLps_24hrD1- bigWig Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_reverse 1 982 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor1%20%28t24%20Subject1%29.CNhs12932.12721-135G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12721-135G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_24hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_ctss_rev Tc:MdmToLps_24hrD1- bigWig Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_reverse 0 982 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor1%20%28t24%20Subject1%29.CNhs12932.12721-135G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12721-135G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_24hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF363UWP SK-N-SH YY1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in SK-N-SH from ENCODE 3 (ENCFF363UWP) 0 983 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in SK-N-SH from ENCODE 3 (ENCFF363UWP)\ parent encTfChipPk off\ shortLabel SK-N-SH YY1\ subGroups cellType=SK-N-SH factor=YY1\ track encTfChipPkENCFF363UWP\ MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_tpm_fwd Tc:MdmToLps_24hrD2+ bigWig Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_forward 1 983 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor2%20%28t24%20Subject2%29.CNhs13403.12819-136I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12819-136I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_24hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track 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strand=forward\ track MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF938CRS SU-DHL-6 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in SU-DHL-6 from ENCODE 3 (ENCFF938CRS) 0 984 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in SU-DHL-6 from ENCODE 3 (ENCFF938CRS)\ parent encTfChipPk off\ shortLabel SU-DHL-6 CTCF\ subGroups cellType=SU-DHL-6 factor=CTCF\ track encTfChipPkENCFF938CRS\ MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_tpm_rev Tc:MdmToLps_24hrD2- bigWig Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_reverse 1 984 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor2%20%28t24%20Subject2%29.CNhs13403.12819-136I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12819-136I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_24hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_ctss_rev Tc:MdmToLps_24hrD2- bigWig Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_reverse 0 984 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor2%20%28t24%20Subject2%29.CNhs13403.12819-136I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12819-136I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_24hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF433NIE T47D ESR1 1 narrowPeak Transcription Factor ChIP-seq Peaks of ESR1 in T47D from ENCODE 3 (ENCFF433NIE) 0 985 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ESR1 in T47D from ENCODE 3 (ENCFF433NIE)\ parent encTfChipPk off\ shortLabel T47D ESR1 1\ subGroups cellType=T47D factor=ESR1\ track encTfChipPkENCFF433NIE\ MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_tpm_fwd Tc:MdmToLps_24hrD3+ bigWig Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_forward 1 985 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor3%20%28t24%20Subject3%29.CNhs13334.12917-138B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12917-138B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_24hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_ctss_fwd Tc:MdmToLps_24hrD3+ bigWig Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_forward 0 985 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor3%20%28t24%20Subject3%29.CNhs13334.12917-138B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12917-138B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_24hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF637WCT T47D ESR1 2 narrowPeak Transcription Factor ChIP-seq Peaks of ESR1 in T47D from ENCODE 3 (ENCFF637WCT) 0 986 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ESR1 in T47D from ENCODE 3 (ENCFF637WCT)\ parent encTfChipPk off\ shortLabel T47D ESR1 2\ subGroups cellType=T47D factor=ESR1\ track encTfChipPkENCFF637WCT\ MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_tpm_rev Tc:MdmToLps_24hrD3- bigWig Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_reverse 1 986 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor3%20%28t24%20Subject3%29.CNhs13334.12917-138B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12917-138B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_24hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_ctss_rev Tc:MdmToLps_24hrD3- bigWig Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_reverse 0 986 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor3%20%28t24%20Subject3%29.CNhs13334.12917-138B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12917-138B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_24hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF396TFS T47D ESR1 3 narrowPeak Transcription Factor ChIP-seq Peaks of ESR1 in T47D from ENCODE 3 (ENCFF396TFS) 0 987 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ESR1 in T47D from ENCODE 3 (ENCFF396TFS)\ parent encTfChipPk off\ shortLabel T47D ESR1 3\ subGroups cellType=T47D factor=ESR1\ track encTfChipPkENCFF396TFS\ MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_tpm_fwd Tc:MdmToLps_36hrD1+ bigWig Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_forward 1 987 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor1%20%28t25%20Subject1%29.CNhs12933.12722-135G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12722-135G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_36hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_ctss_fwd Tc:MdmToLps_36hrD1+ bigWig Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_forward 0 987 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor1%20%28t25%20Subject1%29.CNhs12933.12722-135G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12722-135G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_36hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF420MLJ T47D FOXA1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in T47D from ENCODE 3 (ENCFF420MLJ) 0 988 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in T47D from ENCODE 3 (ENCFF420MLJ)\ parent encTfChipPk off\ shortLabel T47D FOXA1\ subGroups cellType=T47D factor=FOXA1\ track encTfChipPkENCFF420MLJ\ MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_tpm_rev Tc:MdmToLps_36hrD1- bigWig Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_reverse 1 988 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor1%20%28t25%20Subject1%29.CNhs12933.12722-135G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12722-135G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_36hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_ctss_rev Tc:MdmToLps_36hrD1- bigWig Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_reverse 0 988 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor1%20%28t25%20Subject1%29.CNhs12933.12722-135G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12722-135G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_36hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF574HSR T47D GATA3 narrowPeak Transcription Factor ChIP-seq Peaks of GATA3 in T47D from ENCODE 3 (ENCFF574HSR) 0 989 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GATA3 in T47D from ENCODE 3 (ENCFF574HSR)\ parent encTfChipPk off\ shortLabel T47D GATA3\ subGroups cellType=T47D factor=GATA3\ track encTfChipPkENCFF574HSR\ MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_tpm_fwd Tc:MdmToLps_36hrD2+ bigWig Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_forward 1 989 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor2%20%28t25%20Subject2%29.CNhs13404.12820-136I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12820-136I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_36hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_ctss_fwd Tc:MdmToLps_36hrD2+ bigWig Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_forward 0 989 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor2%20%28t25%20Subject2%29.CNhs13404.12820-136I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12820-136I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_36hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF946YUA T47D JUND narrowPeak Transcription Factor ChIP-seq Peaks of JUND in T47D from ENCODE 3 (ENCFF946YUA) 0 990 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of JUND in T47D from ENCODE 3 (ENCFF946YUA)\ parent encTfChipPk off\ shortLabel T47D JUND\ subGroups cellType=T47D factor=JUND\ track encTfChipPkENCFF946YUA\ MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_tpm_rev Tc:MdmToLps_36hrD2- bigWig Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_reverse 1 990 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor2%20%28t25%20Subject2%29.CNhs13404.12820-136I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12820-136I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_36hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_ctss_rev Tc:MdmToLps_36hrD2- bigWig Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_reverse 0 990 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor2%20%28t25%20Subject2%29.CNhs13404.12820-136I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12820-136I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_36hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_tpm_fwd Tc:MdmToLps_36hrD3+ bigWig Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_forward 1 991 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor3%20%28t25%20Subject3%29.CNhs13335.12918-138B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12918-138B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_36hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_ctss_fwd Tc:MdmToLps_36hrD3+ bigWig Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_forward 0 991 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor3%20%28t25%20Subject3%29.CNhs13335.12918-138B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12918-138B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_36hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF078XBU VCaP CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in VCaP from ENCODE 3 (ENCFF078XBU) 0 991 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in VCaP from ENCODE 3 (ENCFF078XBU)\ parent encTfChipPk off\ shortLabel VCaP CTCF\ subGroups cellType=VCaP factor=CTCF\ track encTfChipPkENCFF078XBU\ MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_tpm_rev Tc:MdmToLps_36hrD3- bigWig Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_reverse 1 992 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor3%20%28t25%20Subject3%29.CNhs13335.12918-138B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12918-138B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_36hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_ctss_rev Tc:MdmToLps_36hrD3- bigWig Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_reverse 0 992 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor3%20%28t25%20Subject3%29.CNhs13335.12918-138B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12918-138B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_36hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF262ZOT WERI-Rb-1 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in WERI-Rb-1 from ENCODE 3 (ENCFF262ZOT) 0 992 211 85 255 233 170 255 0 0 0 regulation 1 color 211,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in WERI-Rb-1 from ENCODE 3 (ENCFF262ZOT)\ parent encTfChipPk off\ shortLabel WERI-Rb-1 CTCF\ subGroups cellType=WERI-Rb-1 factor=CTCF\ track encTfChipPkENCFF262ZOT\ MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_tpm_fwd Tc:MdmToLps_48hrD1+ bigWig Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_forward 1 993 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor1%20%28t26%20Subject1%29.CNhs11942.12723-135G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12723-135G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_48hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_ctss_fwd Tc:MdmToLps_48hrD1+ bigWig Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_forward 0 993 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor1%20%28t26%20Subject1%29.CNhs11942.12723-135G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12723-135G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_48hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF695MEK WI38 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in WI38 from ENCODE 3 (ENCFF695MEK) 0 993 255 192 85 255 223 170 0 0 0 regulation 1 color 255,192,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in WI38 from ENCODE 3 (ENCFF695MEK)\ parent encTfChipPk off\ shortLabel WI38 CTCF\ subGroups cellType=WI38 factor=CTCF\ track encTfChipPkENCFF695MEK\ encTfChipPkENCFF730MQM 22Rv1 CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in 22Rv1 from ENCODE 3 (ENCFF730MQM) 0 994 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in 22Rv1 from ENCODE 3 (ENCFF730MQM)\ parent encTfChipPk off\ shortLabel 22Rv1 CTCF 1\ subGroups cellType=X22Rv1 factor=CTCF\ track encTfChipPkENCFF730MQM\ MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_tpm_rev Tc:MdmToLps_48hrD1- bigWig Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_reverse 1 994 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor1%20%28t26%20Subject1%29.CNhs11942.12723-135G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12723-135G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_48hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_ctss_rev Tc:MdmToLps_48hrD1- bigWig Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_reverse 0 994 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor1%20%28t26%20Subject1%29.CNhs11942.12723-135G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12723-135G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_48hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF147YCW 22Rv1 CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in 22Rv1 from ENCODE 3 (ENCFF147YCW) 0 995 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in 22Rv1 from ENCODE 3 (ENCFF147YCW)\ parent encTfChipPk off\ shortLabel 22Rv1 CTCF 2\ subGroups cellType=X22Rv1 factor=CTCF\ track encTfChipPkENCFF147YCW\ MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_tpm_fwd Tc:MdmToLps_48hrD2+ bigWig Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_forward 1 995 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor2%20%28t26%20Subject2%29.CNhs13405.12821-136I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12821-136I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_48hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_ctss_fwd Tc:MdmToLps_48hrD2+ bigWig Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_forward 0 995 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor2%20%28t26%20Subject2%29.CNhs13405.12821-136I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12821-136I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_48hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF447UZC 22Rv1 ZFX narrowPeak Transcription Factor ChIP-seq Peaks of ZFX in 22Rv1 from ENCODE 3 (ENCFF447UZC) 0 996 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZFX in 22Rv1 from ENCODE 3 (ENCFF447UZC)\ parent encTfChipPk off\ shortLabel 22Rv1 ZFX\ subGroups cellType=X22Rv1 factor=ZFX\ track encTfChipPkENCFF447UZC\ MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_tpm_rev Tc:MdmToLps_48hrD2- bigWig Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_reverse 1 996 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor2%20%28t26%20Subject2%29.CNhs13405.12821-136I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12821-136I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_48hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_ctss_rev Tc:MdmToLps_48hrD2- bigWig Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_reverse 0 996 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor2%20%28t26%20Subject2%29.CNhs13405.12821-136I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12821-136I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_48hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF114FNT adrenlGlnd CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF114FNT) 0 997 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF114FNT)\ parent encTfChipPk off\ shortLabel adrenlGlnd CTCF 1\ subGroups cellType=adrenal_gland factor=CTCF\ track encTfChipPkENCFF114FNT\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_tpm_fwd MyoblastToMyotubes_Day00D1+ bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_forward 1 997 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14586.13496-145C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13496-145C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_ctss_fwd MyoblastToMyotubes_Day00D1+ bigWig Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_forward 0 997 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor1.CNhs13847.13469-144I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13469-144I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF174CEI adrenlGlnd CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF174CEI) 0 998 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF174CEI)\ parent encTfChipPk off\ shortLabel adrenlGlnd CTCF 2\ subGroups cellType=adrenal_gland factor=CTCF\ track encTfChipPkENCFF174CEI\ MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_tpm_fwd MyoblastToMyotubes_Day00D1+ bigWig Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_forward 1 998 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor1.CNhs13847.13469-144I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13469-144I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_ctss_fwd MyoblastToMyotubes_Day00D1+ bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_forward 0 998 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14586.13496-145C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13496-145C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF574FIL adrenlGlnd CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF574FIL) 0 999 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF574FIL)\ parent encTfChipPk off\ shortLabel adrenlGlnd CTCF 3\ subGroups cellType=adrenal_gland factor=CTCF\ track encTfChipPkENCFF574FIL\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_tpm_rev MyoblastToMyotubes_Day00D1- bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_reverse 1 999 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14586.13496-145C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13496-145C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_ctss_rev MyoblastToMyotubes_Day00D1- bigWig Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_reverse 0 999 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor1.CNhs13847.13469-144I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13469-144I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF412TMX adrenlGlnd CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF412TMX) 0 1000 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF412TMX)\ parent encTfChipPk off\ shortLabel adrenlGlnd CTCF 4\ subGroups cellType=adrenal_gland factor=CTCF\ track encTfChipPkENCFF412TMX\ MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_tpm_rev MyoblastToMyotubes_Day00D1- bigWig Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_reverse 1 1000 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor1.CNhs13847.13469-144I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13469-144I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_ctss_rev MyoblastToMyotubes_Day00D1- bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_reverse 0 1000 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14586.13496-145C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13496-145C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF363GNR adrnlGld POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in adrenal_gland from ENCODE 3 (ENCFF363GNR) 0 1001 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in adrenal_gland from ENCODE 3 (ENCFF363GNR)\ parent encTfChipPk off\ shortLabel adrnlGld POLR2A 1\ subGroups cellType=adrenal_gland factor=POLR2A\ track encTfChipPkENCFF363GNR\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_tpm_fwd MyoblastToMyotubes_Day00D2+ bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_forward 1 1001 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14596.13505-145D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13505-145D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_ctss_fwd MyoblastToMyotubes_Day00D2+ bigWig Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_forward 0 1001 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor2.CNhs14567.13478-145A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13478-145A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF967EOL adrnlGld POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in adrenal_gland from ENCODE 3 (ENCFF967EOL) 0 1002 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in adrenal_gland from ENCODE 3 (ENCFF967EOL)\ parent encTfChipPk off\ shortLabel adrnlGld POLR2A 2\ subGroups cellType=adrenal_gland factor=POLR2A\ track encTfChipPkENCFF967EOL\ MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_tpm_fwd MyoblastToMyotubes_Day00D2+ bigWig Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_forward 1 1002 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor2.CNhs14567.13478-145A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13478-145A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_ctss_fwd MyoblastToMyotubes_Day00D2+ bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_forward 0 1002 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14596.13505-145D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13505-145D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF374MIO ascendAorta CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in ascending_aorta from ENCODE 3 (ENCFF374MIO) 0 1003 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in ascending_aorta from ENCODE 3 (ENCFF374MIO)\ parent encTfChipPk off\ shortLabel ascendAorta CTCF\ subGroups cellType=ascending_aorta factor=CTCF\ track encTfChipPkENCFF374MIO\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_tpm_rev MyoblastToMyotubes_Day00D2- bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_reverse 1 1003 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14596.13505-145D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13505-145D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_ctss_rev MyoblastToMyotubes_Day00D2- bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_reverse 0 1003 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14596.13505-145D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13505-145D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF148BSH astrocyte CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in astrocyte from ENCODE 3 (ENCFF148BSH) 0 1004 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in astrocyte from ENCODE 3 (ENCFF148BSH)\ parent encTfChipPk off\ shortLabel astrocyte CTCF\ subGroups cellType=astrocyte factor=CTCF\ track encTfChipPkENCFF148BSH\ MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_tpm_rev MyoblastToMyotubes_Day00D2- bigWig Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_reverse 1 1004 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor2.CNhs14567.13478-145A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13478-145A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_ctss_rev MyoblastToMyotubes_Day00D2- bigWig Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_reverse 0 1004 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor2.CNhs14567.13478-145A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13478-145A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF515KNI cerebAstrcyt CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in astrocyte_of_the_cerebellum from ENCODE 3 (ENCFF515KNI) 0 1005 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in astrocyte_of_the_cerebellum from ENCODE 3 (ENCFF515KNI)\ parent encTfChipPk off\ shortLabel cerebAstrcyt CTCF\ subGroups cellType=astrocyte_of_the_cerebellum factor=CTCF\ track encTfChipPkENCFF515KNI\ MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_tpm_fwd MyoblastToMyotubes_Day00D3+ bigWig Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_forward 1 1005 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor3.CNhs14577.13487-145B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13487-145B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_ctss_fwd MyoblastToMyotubes_Day00D3+ bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_forward 0 1005 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14605.13514-145E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13514-145E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_tpm_fwd MyoblastToMyotubes_Day00D3+ bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_forward 1 1006 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14605.13514-145E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13514-145E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_ctss_fwd MyoblastToMyotubes_Day00D3+ bigWig Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_forward 0 1006 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor3.CNhs14577.13487-145B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13487-145B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF600CYD spinlAstrcyt CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in astrocyte_of_the_spinal_cord from ENCODE 3 (ENCFF600CYD) 0 1006 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in astrocyte_of_the_spinal_cord from ENCODE 3 (ENCFF600CYD)\ parent encTfChipPk off\ shortLabel spinlAstrcyt CTCF\ subGroups cellType=astrocyte_of_the_spinal_cord factor=CTCF\ track encTfChipPkENCFF600CYD\ encTfChipPkENCFF904CNB biplNeuron CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in bipolar_neuron from ENCODE 3 (ENCFF904CNB) 0 1007 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in bipolar_neuron from ENCODE 3 (ENCFF904CNB)\ parent encTfChipPk off\ shortLabel biplNeuron CTCF 1\ subGroups cellType=bipolar_neuron factor=CTCF\ track encTfChipPkENCFF904CNB\ MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_tpm_rev MyoblastToMyotubes_Day00D3- bigWig Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_reverse 1 1007 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor3.CNhs14577.13487-145B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13487-145B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_ctss_rev MyoblastToMyotubes_Day00D3- bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_reverse 0 1007 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14605.13514-145E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13514-145E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF203ZIS biplNeuron CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in bipolar_neuron from ENCODE 3 (ENCFF203ZIS) 0 1008 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in bipolar_neuron from ENCODE 3 (ENCFF203ZIS)\ parent encTfChipPk off\ shortLabel biplNeuron CTCF 2\ subGroups cellType=bipolar_neuron factor=CTCF\ track encTfChipPkENCFF203ZIS\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_tpm_rev MyoblastToMyotubes_Day00D3- bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_reverse 1 1008 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14605.13514-145E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13514-145E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_ctss_rev MyoblastToMyotubes_Day00D3- bigWig Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_reverse 0 1008 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor3.CNhs14577.13487-145B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13487-145B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF482JUI bipNeuron SMARCA4 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA4 in bipolar_neuron from ENCODE 3 (ENCFF482JUI) 0 1009 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SMARCA4 in bipolar_neuron from ENCODE 3 (ENCFF482JUI)\ parent encTfChipPk off\ shortLabel bipNeuron SMARCA4\ subGroups cellType=bipolar_neuron factor=SMARCA4\ track encTfChipPkENCFF482JUI\ MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_tpm_fwd MyoblastToMyotubes_Day01D1+ bigWig Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_forward 1 1009 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor1.CNhs13848.13470-144I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13470-144I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_ctss_fwd MyoblastToMyotubes_Day01D1+ bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_forward 0 1009 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14587.13497-145C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13497-145C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF984VPB biplNeuron ZEB1 narrowPeak Transcription Factor ChIP-seq Peaks of ZEB1 in bipolar_neuron from ENCODE 3 (ENCFF984VPB) 0 1010 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZEB1 in bipolar_neuron from ENCODE 3 (ENCFF984VPB)\ parent encTfChipPk off\ shortLabel biplNeuron ZEB1\ subGroups cellType=bipolar_neuron factor=ZEB1\ track encTfChipPkENCFF984VPB\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_tpm_fwd MyoblastToMyotubes_Day01D1+ bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_forward 1 1010 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14587.13497-145C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13497-145C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_ctss_fwd MyoblastToMyotubes_Day01D1+ bigWig Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_forward 0 1010 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor1.CNhs13848.13470-144I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13470-144I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_tpm_rev MyoblastToMyotubes_Day01D1- bigWig Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_reverse 1 1011 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor1.CNhs13848.13470-144I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13470-144I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_ctss_rev MyoblastToMyotubes_Day01D1- bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_reverse 0 1011 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14587.13497-145C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13497-145C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF872XQU pancreas CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF872XQU) 0 1011 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF872XQU)\ parent encTfChipPk off\ shortLabel pancreas CTCF 1\ subGroups cellType=body_of_pancreas factor=CTCF\ track encTfChipPkENCFF872XQU\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_tpm_rev MyoblastToMyotubes_Day01D1- bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_reverse 1 1012 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14587.13497-145C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13497-145C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_ctss_rev MyoblastToMyotubes_Day01D1- bigWig Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_reverse 0 1012 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor1.CNhs13848.13470-144I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13470-144I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF610UCL pancreas CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF610UCL) 0 1012 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF610UCL)\ parent encTfChipPk off\ shortLabel pancreas CTCF 2\ subGroups cellType=body_of_pancreas factor=CTCF\ track encTfChipPkENCFF610UCL\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_tpm_fwd MyoblastToMyotubes_Day01D2+ bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_forward 1 1013 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14597.13506-145D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13506-145D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_ctss_fwd MyoblastToMyotubes_Day01D2+ bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_forward 0 1013 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14597.13506-145D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13506-145D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF153EBU pancreas CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF153EBU) 0 1013 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF153EBU)\ parent encTfChipPk off\ shortLabel pancreas CTCF 3\ subGroups cellType=body_of_pancreas factor=CTCF\ track encTfChipPkENCFF153EBU\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_tpm_rev MyoblastToMyotubes_Day01D2- bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_reverse 1 1014 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14597.13506-145D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13506-145D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_ctss_rev MyoblastToMyotubes_Day01D2- bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_reverse 0 1014 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14597.13506-145D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13506-145D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF900GKE pancreas CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF900GKE) 0 1014 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF900GKE)\ parent encTfChipPk off\ shortLabel pancreas CTCF 4\ subGroups cellType=body_of_pancreas factor=CTCF\ track encTfChipPkENCFF900GKE\ MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_tpm_fwd MyoblastToMyotubes_Day01D3+ bigWig Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_forward 1 1015 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor3.CNhs14578.13488-145B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13488-145B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_ctss_fwd MyoblastToMyotubes_Day01D3+ bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_forward 0 1015 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14606.13515-145E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13515-145E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF389ULP pancreas POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF389ULP) 0 1015 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF389ULP)\ parent encTfChipPk on\ shortLabel pancreas POLR2A 1\ subGroups cellType=body_of_pancreas factor=POLR2A\ track encTfChipPkENCFF389ULP\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_tpm_fwd MyoblastToMyotubes_Day01D3+ bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_forward 1 1016 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14606.13515-145E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13515-145E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_ctss_fwd MyoblastToMyotubes_Day01D3+ bigWig Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_forward 0 1016 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor3.CNhs14578.13488-145B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13488-145B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF306CZZ pancreas POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF306CZZ) 0 1016 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF306CZZ)\ parent encTfChipPk off\ shortLabel pancreas POLR2A 2\ subGroups cellType=body_of_pancreas factor=POLR2A\ track encTfChipPkENCFF306CZZ\ MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_tpm_rev MyoblastToMyotubes_Day01D3- bigWig Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_reverse 1 1017 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor3.CNhs14578.13488-145B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13488-145B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_ctss_rev MyoblastToMyotubes_Day01D3- bigWig Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_reverse 0 1017 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor3.CNhs14578.13488-145B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13488-145B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF296AFJ pancreas POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF296AFJ) 0 1017 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF296AFJ)\ parent encTfChipPk off\ shortLabel pancreas POLR2A 3\ subGroups cellType=body_of_pancreas factor=POLR2A\ track encTfChipPkENCFF296AFJ\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_tpm_rev MyoblastToMyotubes_Day01D3- bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_reverse 1 1018 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14606.13515-145E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13515-145E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_ctss_rev MyoblastToMyotubes_Day01D3- bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_reverse 0 1018 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14606.13515-145E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13515-145E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF371GSC pancreas POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF371GSC) 0 1018 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF371GSC)\ parent encTfChipPk off\ shortLabel pancreas POLR2A 4\ subGroups cellType=body_of_pancreas factor=POLR2A\ track encTfChipPkENCFF371GSC\ encTfChipPkENCFF427RYJ brainMicEndo CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in brain_microvascular_endothelial_cell from ENCODE 3 (ENCFF427RYJ) 0 1019 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in brain_microvascular_endothelial_cell from ENCODE 3 (ENCFF427RYJ)\ parent encTfChipPk off\ shortLabel brainMicEndo CTCF\ subGroups cellType=brain_microvascular_endothelial_cell factor=CTCF\ track encTfChipPkENCFF427RYJ\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_tpm_fwd MyoblastToMyotubes_Day02D1+ bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_forward 1 1019 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14588.13498-145C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13498-145C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_ctss_fwd MyoblastToMyotubes_Day02D1+ bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_forward 0 1019 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14588.13498-145C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13498-145C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF338TGS breastEpi CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in breast_epithelium from ENCODE 3 (ENCFF338TGS) 0 1020 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in breast_epithelium from ENCODE 3 (ENCFF338TGS)\ parent encTfChipPk off\ shortLabel breastEpi CTCF 1\ subGroups cellType=breast_epithelium factor=CTCF\ track encTfChipPkENCFF338TGS\ MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_tpm_fwd MyoblastToMyotubes_Day02D1+ bigWig Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_forward 1 1020 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor1.CNhs13849.13471-144I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13471-144I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_ctss_fwd MyoblastToMyotubes_Day02D1+ bigWig Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_forward 0 1020 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor1.CNhs13849.13471-144I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13471-144I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF167SCX breastEpi CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in breast_epithelium from ENCODE 3 (ENCFF167SCX) 0 1021 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in breast_epithelium from ENCODE 3 (ENCFF167SCX)\ parent encTfChipPk off\ shortLabel breastEpi CTCF 2\ subGroups cellType=breast_epithelium factor=CTCF\ track encTfChipPkENCFF167SCX\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_tpm_rev MyoblastToMyotubes_Day02D1- bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_reverse 1 1021 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14588.13498-145C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13498-145C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_ctss_rev MyoblastToMyotubes_Day02D1- bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_reverse 0 1021 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14588.13498-145C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13498-145C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF113XGW breastEpi CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in breast_epithelium from ENCODE 3 (ENCFF113XGW) 0 1022 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in breast_epithelium from ENCODE 3 (ENCFF113XGW)\ parent encTfChipPk off\ shortLabel breastEpi CTCF 3\ subGroups cellType=breast_epithelium factor=CTCF\ track encTfChipPkENCFF113XGW\ MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_tpm_rev MyoblastToMyotubes_Day02D1- bigWig Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_reverse 1 1022 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor1.CNhs13849.13471-144I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13471-144I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_ctss_rev MyoblastToMyotubes_Day02D1- bigWig Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_reverse 0 1022 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor1.CNhs13849.13471-144I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13471-144I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF978RPI breastEpi EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF978RPI) 0 1023 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF978RPI)\ parent encTfChipPk off\ shortLabel breastEpi EP300 1\ subGroups cellType=breast_epithelium factor=EP300\ track encTfChipPkENCFF978RPI\ MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_tpm_fwd MyoblastToMyotubes_Day02D2+ bigWig Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_forward 1 1023 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor2.CNhs14570.13480-145A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13480-145A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_ctss_fwd MyoblastToMyotubes_Day02D2+ bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_forward 0 1023 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14598.13507-145D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13507-145D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF757KZD breastEpi EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF757KZD) 0 1024 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF757KZD)\ parent encTfChipPk off\ shortLabel breastEpi EP300 2\ subGroups cellType=breast_epithelium factor=EP300\ track encTfChipPkENCFF757KZD\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_tpm_fwd MyoblastToMyotubes_Day02D2+ bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_forward 1 1024 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14598.13507-145D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13507-145D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_ctss_fwd MyoblastToMyotubes_Day02D2+ bigWig Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_forward 0 1024 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor2.CNhs14570.13480-145A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13480-145A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF614VFU breastEpi EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF614VFU) 0 1025 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF614VFU)\ parent encTfChipPk off\ shortLabel breastEpi EP300 3\ subGroups cellType=breast_epithelium factor=EP300\ track encTfChipPkENCFF614VFU\ MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_tpm_rev MyoblastToMyotubes_Day02D2- bigWig Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_reverse 1 1025 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor2.CNhs14570.13480-145A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13480-145A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_ctss_rev MyoblastToMyotubes_Day02D2- bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_reverse 0 1025 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14598.13507-145D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13507-145D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF906VTL breastEpi EP300 4 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF906VTL) 0 1026 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF906VTL)\ parent encTfChipPk off\ shortLabel breastEpi EP300 4\ subGroups cellType=breast_epithelium factor=EP300\ track encTfChipPkENCFF906VTL\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_tpm_rev MyoblastToMyotubes_Day02D2- bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_reverse 1 1026 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14598.13507-145D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13507-145D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_ctss_rev MyoblastToMyotubes_Day02D2- bigWig Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_reverse 0 1026 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor2.CNhs14570.13480-145A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13480-145A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF294TAI brestEpi POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in breast_epithelium from ENCODE 3 (ENCFF294TAI) 0 1027 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in breast_epithelium from ENCODE 3 (ENCFF294TAI)\ parent encTfChipPk off\ shortLabel brestEpi POLR2A 1\ subGroups cellType=breast_epithelium factor=POLR2A\ track encTfChipPkENCFF294TAI\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_tpm_fwd MyoblastToMyotubes_Day02D3+ bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_forward 1 1027 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14607.13516-145E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13516-145E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_ctss_fwd MyoblastToMyotubes_Day02D3+ bigWig Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_forward 0 1027 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor3.CNhs14579.13489-145B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13489-145B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF607YLT brestEpi POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in breast_epithelium from ENCODE 3 (ENCFF607YLT) 0 1028 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in breast_epithelium from ENCODE 3 (ENCFF607YLT)\ parent encTfChipPk off\ shortLabel brestEpi POLR2A 2\ subGroups cellType=breast_epithelium factor=POLR2A\ track encTfChipPkENCFF607YLT\ MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_tpm_fwd MyoblastToMyotubes_Day02D3+ bigWig Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_forward 1 1028 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor3.CNhs14579.13489-145B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13489-145B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_ctss_fwd MyoblastToMyotubes_Day02D3+ bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_forward 0 1028 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14607.13516-145E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13516-145E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF243AGG heartFibro CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in cardiac_fibroblast from ENCODE 3 (ENCFF243AGG) 0 1029 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in cardiac_fibroblast from ENCODE 3 (ENCFF243AGG)\ parent encTfChipPk off\ shortLabel heartFibro CTCF\ subGroups cellType=cardiac_fibroblast factor=CTCF\ track encTfChipPkENCFF243AGG\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_tpm_rev MyoblastToMyotubes_Day02D3- bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_reverse 1 1029 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14607.13516-145E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13516-145E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_ctss_rev MyoblastToMyotubes_Day02D3- bigWig Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_reverse 0 1029 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor3.CNhs14579.13489-145B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13489-145B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF301YXM heartMuscl CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in cardiac_muscle_cell from ENCODE 3 (ENCFF301YXM) 0 1030 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in cardiac_muscle_cell from ENCODE 3 (ENCFF301YXM)\ parent encTfChipPk off\ shortLabel heartMuscl CTCF 1\ subGroups cellType=cardiac_muscle_cell factor=CTCF\ track encTfChipPkENCFF301YXM\ MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_tpm_rev MyoblastToMyotubes_Day02D3- bigWig Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_reverse 1 1030 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor3.CNhs14579.13489-145B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13489-145B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_ctss_rev MyoblastToMyotubes_Day02D3- bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_reverse 0 1030 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14607.13516-145E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13516-145E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF863ZIN heartMuscl CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in cardiac_muscle_cell from ENCODE 3 (ENCFF863ZIN) 0 1031 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in cardiac_muscle_cell from ENCODE 3 (ENCFF863ZIN)\ parent encTfChipPk off\ shortLabel heartMuscl CTCF 2\ subGroups cellType=cardiac_muscle_cell factor=CTCF\ track encTfChipPkENCFF863ZIN\ MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_tpm_fwd MyoblastToMyotubes_Day03D1+ bigWig Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_forward 1 1031 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor1.CNhs13850.13472-144I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13472-144I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_ctss_fwd MyoblastToMyotubes_Day03D1+ bigWig Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_forward 0 1031 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor1.CNhs13850.13472-144I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13472-144I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF136ZAK chorPlexEpi CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in choroid_plexus_epithelial_cell from ENCODE 3 (ENCFF136ZAK) 0 1032 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in choroid_plexus_epithelial_cell from ENCODE 3 (ENCFF136ZAK)\ parent encTfChipPk off\ shortLabel chorPlexEpi CTCF\ subGroups cellType=choroid_plexus_epithelial_cell factor=CTCF\ track encTfChipPkENCFF136ZAK\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_tpm_fwd MyoblastToMyotubes_Day03D1+ bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_forward 1 1032 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14589.13499-145C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13499-145C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_ctss_fwd MyoblastToMyotubes_Day03D1+ bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_forward 0 1032 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14589.13499-145C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13499-145C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_tpm_rev MyoblastToMyotubes_Day03D1- bigWig Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_reverse 1 1033 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor1.CNhs13850.13472-144I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13472-144I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_ctss_rev MyoblastToMyotubes_Day03D1- bigWig Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_reverse 0 1033 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor1.CNhs13850.13472-144I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13472-144I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF522JCV umbilVenEndo CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF522JCV) 0 1033 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF522JCV)\ parent encTfChipPk off\ shortLabel umbilVenEndo CTCF\ subGroups cellType=endothelial_cell_of_umbilical_vein factor=CTCF\ track encTfChipPkENCFF522JCV\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_tpm_rev MyoblastToMyotubes_Day03D1- bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_reverse 1 1034 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14589.13499-145C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13499-145C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_ctss_rev MyoblastToMyotubes_Day03D1- bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_reverse 0 1034 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14589.13499-145C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13499-145C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF327GZX umbilVeinEndo FOS narrowPeak Transcription Factor ChIP-seq Peaks of FOS in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF327GZX) 0 1034 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOS in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF327GZX)\ parent encTfChipPk on\ shortLabel umbilVeinEndo FOS\ subGroups cellType=endothelial_cell_of_umbilical_vein factor=FOS\ track encTfChipPkENCFF327GZX\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_tpm_fwd MyoblastToMyotubes_Day03D2+ bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_forward 1 1035 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14599.13508-145D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13508-145D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_ctss_fwd MyoblastToMyotubes_Day03D2+ bigWig Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_forward 0 1035 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor2.CNhs14571.13481-145A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13481-145A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF987YIJ umbilVein GATA2 narrowPeak Transcription Factor ChIP-seq Peaks of GATA2 in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF987YIJ) 0 1035 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GATA2 in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF987YIJ)\ parent encTfChipPk off\ shortLabel umbilVein GATA2\ subGroups cellType=endothelial_cell_of_umbilical_vein factor=GATA2\ track encTfChipPkENCFF987YIJ\ MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_tpm_fwd MyoblastToMyotubes_Day03D2+ bigWig Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_forward 1 1036 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor2.CNhs14571.13481-145A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13481-145A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_ctss_fwd MyoblastToMyotubes_Day03D2+ bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_forward 0 1036 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14599.13508-145D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13508-145D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF387VGY umbilVein POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF387VGY) 0 1036 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF387VGY)\ parent encTfChipPk off\ shortLabel umbilVein POLR2A\ subGroups cellType=endothelial_cell_of_umbilical_vein factor=POLR2A\ track encTfChipPkENCFF387VGY\ encTfChipPkENCFF796AAX esophagEpi CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in epithelial_cell_of_esophagus from ENCODE 3 (ENCFF796AAX) 0 1037 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in epithelial_cell_of_esophagus from ENCODE 3 (ENCFF796AAX)\ parent encTfChipPk off\ shortLabel esophagEpi CTCF\ subGroups cellType=epithelial_cell_of_esophagus factor=CTCF\ track encTfChipPkENCFF796AAX\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_tpm_rev MyoblastToMyotubes_Day03D2- bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_reverse 1 1037 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14599.13508-145D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13508-145D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_ctss_rev MyoblastToMyotubes_Day03D2- bigWig Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_reverse 0 1037 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor2.CNhs14571.13481-145A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13481-145A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_tpm_rev MyoblastToMyotubes_Day03D2- bigWig Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_reverse 1 1038 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor2.CNhs14571.13481-145A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13481-145A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_ctss_rev MyoblastToMyotubes_Day03D2- bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_reverse 0 1038 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14599.13508-145D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13508-145D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF712LFQ prostateEpi CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in epithelial_cell_of_prostate from ENCODE 3 (ENCFF712LFQ) 0 1038 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in epithelial_cell_of_prostate from ENCODE 3 (ENCFF712LFQ)\ parent encTfChipPk off\ shortLabel prostateEpi CTCF\ subGroups cellType=epithelial_cell_of_prostate factor=CTCF\ track encTfChipPkENCFF712LFQ\ encTfChipPkENCFF789ZAT erythblst GATA1 1 narrowPeak Transcription Factor ChIP-seq Peaks of GATA1 in erythroblast from ENCODE 3 (ENCFF789ZAT) 0 1039 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GATA1 in erythroblast from ENCODE 3 (ENCFF789ZAT)\ parent encTfChipPk off\ shortLabel erythblst GATA1 1\ subGroups cellType=erythroblast factor=GATA1\ track encTfChipPkENCFF789ZAT\ MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_tpm_fwd MyoblastToMyotubes_Day03D3+ bigWig Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_forward 1 1039 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor3.CNhs14580.13490-145B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13490-145B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_ctss_fwd MyoblastToMyotubes_Day03D3+ bigWig Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_forward 0 1039 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor3.CNhs14580.13490-145B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13490-145B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF180BYN erythblst GATA1 2 narrowPeak Transcription Factor ChIP-seq Peaks of GATA1 in erythroblast from ENCODE 3 (ENCFF180BYN) 0 1040 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GATA1 in erythroblast from ENCODE 3 (ENCFF180BYN)\ parent encTfChipPk off\ shortLabel erythblst GATA1 2\ subGroups cellType=erythroblast factor=GATA1\ track encTfChipPkENCFF180BYN\ MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_tpm_rev MyoblastToMyotubes_Day03D3- bigWig Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_reverse 1 1040 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor3.CNhs14580.13490-145B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13490-145B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_ctss_rev MyoblastToMyotubes_Day03D3- bigWig Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_reverse 0 1040 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor3.CNhs14580.13490-145B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13490-145B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF897UFD esphMscMuc CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF897UFD) 0 1041 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF897UFD)\ parent encTfChipPk off\ shortLabel esphMscMuc CTCF 1\ subGroups cellType=esophagus_muscularis_mucosa factor=CTCF\ track encTfChipPkENCFF897UFD\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_tpm_fwd MyoblastToMyotubes_Day04D1+ bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_forward 1 1041 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14590.13500-145C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13500-145C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_ctss_fwd MyoblastToMyotubes_Day04D1+ bigWig Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_forward 0 1041 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor1.CNhs13851.13473-144I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13473-144I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF373DVN esphMscMuc CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF373DVN) 0 1042 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF373DVN)\ parent encTfChipPk off\ shortLabel esphMscMuc CTCF 2\ subGroups cellType=esophagus_muscularis_mucosa factor=CTCF\ track encTfChipPkENCFF373DVN\ MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_tpm_fwd MyoblastToMyotubes_Day04D1+ bigWig Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_forward 1 1042 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor1.CNhs13851.13473-144I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13473-144I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_ctss_fwd MyoblastToMyotubes_Day04D1+ bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_forward 0 1042 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14590.13500-145C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13500-145C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF725FJK esphMscMuc CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF725FJK) 0 1043 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF725FJK)\ parent encTfChipPk off\ shortLabel esphMscMuc CTCF 3\ subGroups cellType=esophagus_muscularis_mucosa factor=CTCF\ track encTfChipPkENCFF725FJK\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_tpm_rev MyoblastToMyotubes_Day04D1- bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_reverse 1 1043 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14590.13500-145C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13500-145C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_ctss_rev MyoblastToMyotubes_Day04D1- bigWig Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_reverse 0 1043 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor1.CNhs13851.13473-144I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13473-144I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF081YBG esphMscMc EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF081YBG) 0 1044 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF081YBG)\ parent encTfChipPk off\ shortLabel esphMscMc EP300 1\ subGroups cellType=esophagus_muscularis_mucosa factor=EP300\ track encTfChipPkENCFF081YBG\ MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_tpm_rev MyoblastToMyotubes_Day04D1- bigWig Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_reverse 1 1044 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor1.CNhs13851.13473-144I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13473-144I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_ctss_rev MyoblastToMyotubes_Day04D1- bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_reverse 0 1044 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14590.13500-145C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13500-145C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF261OWX esphMscMc EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF261OWX) 0 1045 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF261OWX)\ parent encTfChipPk off\ shortLabel esphMscMc EP300 2\ subGroups cellType=esophagus_muscularis_mucosa factor=EP300\ track encTfChipPkENCFF261OWX\ MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_tpm_fwd MyoblastToMyotubes_Day04D2+ bigWig Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_forward 1 1045 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor2.CNhs14572.13482-145A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13482-145A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_ctss_fwd MyoblastToMyotubes_Day04D2+ bigWig Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_forward 0 1045 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor2.CNhs14572.13482-145A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13482-145A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF287SLI esphMscMc EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF287SLI) 0 1046 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF287SLI)\ parent encTfChipPk off\ shortLabel esphMscMc EP300 3\ subGroups cellType=esophagus_muscularis_mucosa factor=EP300\ track encTfChipPkENCFF287SLI\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_tpm_fwd MyoblastToMyotubes_Day04D2+ bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_forward 1 1046 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14600.13509-145D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13509-145D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_ctss_fwd MyoblastToMyotubes_Day04D2+ bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_forward 0 1046 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14600.13509-145D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13509-145D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF087RBS esphMscMc EP300 4 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF087RBS) 0 1047 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF087RBS)\ parent encTfChipPk off\ shortLabel esphMscMc EP300 4\ subGroups cellType=esophagus_muscularis_mucosa factor=EP300\ track encTfChipPkENCFF087RBS\ MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_tpm_rev MyoblastToMyotubes_Day04D2- bigWig Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_reverse 1 1047 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor2.CNhs14572.13482-145A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13482-145A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_ctss_rev MyoblastToMyotubes_Day04D2- bigWig Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_reverse 0 1047 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor2.CNhs14572.13482-145A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13482-145A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF906CSG esophMscMc POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF906CSG) 0 1048 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF906CSG)\ parent encTfChipPk off\ shortLabel esophMscMc POLR2A\ subGroups cellType=esophagus_muscularis_mucosa factor=POLR2A\ track encTfChipPkENCFF906CSG\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_tpm_rev MyoblastToMyotubes_Day04D2- bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_reverse 1 1048 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14600.13509-145D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13509-145D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_ctss_rev MyoblastToMyotubes_Day04D2- bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_reverse 0 1048 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14600.13509-145D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13509-145D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF898JJD esphSquEpi CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF898JJD) 0 1049 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF898JJD)\ parent encTfChipPk off\ shortLabel esphSquEpi CTCF 1\ subGroups cellType=esophagus_squamous_epithelium factor=CTCF\ track encTfChipPkENCFF898JJD\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_tpm_fwd MyoblastToMyotubes_Day04D3+ bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_forward 1 1049 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14609.13518-145E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13518-145E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_ctss_fwd MyoblastToMyotubes_Day04D3+ bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_forward 0 1049 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14609.13518-145E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13518-145E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF350AMQ esphSquEpi CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF350AMQ) 0 1050 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF350AMQ)\ parent encTfChipPk off\ shortLabel esphSquEpi CTCF 2\ subGroups cellType=esophagus_squamous_epithelium factor=CTCF\ track encTfChipPkENCFF350AMQ\ MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_tpm_fwd MyoblastToMyotubes_Day04D3+ bigWig Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_forward 1 1050 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor3.CNhs14581.13491-145B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13491-145B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_ctss_fwd MyoblastToMyotubes_Day04D3+ bigWig Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_forward 0 1050 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor3.CNhs14581.13491-145B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13491-145B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF661IIS esphSquEpi CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF661IIS) 0 1051 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF661IIS)\ parent encTfChipPk off\ shortLabel esphSquEpi CTCF 3\ subGroups cellType=esophagus_squamous_epithelium factor=CTCF\ track encTfChipPkENCFF661IIS\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_tpm_rev MyoblastToMyotubes_Day04D3- bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_reverse 1 1051 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14609.13518-145E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13518-145E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_ctss_rev MyoblastToMyotubes_Day04D3- bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_reverse 0 1051 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14609.13518-145E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13518-145E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF505VMB esphSquEpi CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF505VMB) 0 1052 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF505VMB)\ parent encTfChipPk off\ shortLabel esphSquEpi CTCF 4\ subGroups cellType=esophagus_squamous_epithelium factor=CTCF\ track encTfChipPkENCFF505VMB\ MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_tpm_rev MyoblastToMyotubes_Day04D3- bigWig Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_reverse 1 1052 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor3.CNhs14581.13491-145B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13491-145B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_ctss_rev MyoblastToMyotubes_Day04D3- bigWig Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_reverse 0 1052 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor3.CNhs14581.13491-145B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13491-145B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF157FXA esphSqEp POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF157FXA) 0 1053 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF157FXA)\ parent encTfChipPk off\ shortLabel esphSqEp POLR2A 1\ subGroups cellType=esophagus_squamous_epithelium factor=POLR2A\ track encTfChipPkENCFF157FXA\ MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_tpm_fwd MyoblastToMyotubes_Day06D1+ bigWig Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_forward 1 1053 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor1.CNhs13852.13474-144I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13474-144I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_ctss_fwd MyoblastToMyotubes_Day06D1+ bigWig Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_forward 0 1053 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor1.CNhs13852.13474-144I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13474-144I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF542QLV esphSqEp POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF542QLV) 0 1054 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF542QLV)\ parent encTfChipPk off\ shortLabel esphSqEp POLR2A 2\ subGroups cellType=esophagus_squamous_epithelium factor=POLR2A\ track encTfChipPkENCFF542QLV\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_tpm_fwd MyoblastToMyotubes_Day06D1+ bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_forward 1 1054 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14591.13501-145C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13501-145C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_ctss_fwd MyoblastToMyotubes_Day06D1+ bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_forward 0 1054 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14591.13501-145C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13501-145C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF691ARB esphSqEp POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF691ARB) 0 1055 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF691ARB)\ parent encTfChipPk off\ shortLabel esphSqEp POLR2A 3\ subGroups cellType=esophagus_squamous_epithelium factor=POLR2A\ track encTfChipPkENCFF691ARB\ MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_tpm_rev MyoblastToMyotubes_Day06D1- bigWig Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_reverse 1 1055 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor1.CNhs13852.13474-144I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13474-144I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_ctss_rev MyoblastToMyotubes_Day06D1- bigWig Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_reverse 0 1055 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor1.CNhs13852.13474-144I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13474-144I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF930NQQ esphSqEp POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF930NQQ) 0 1056 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF930NQQ)\ parent encTfChipPk off\ shortLabel esphSqEp POLR2A 4\ subGroups cellType=esophagus_squamous_epithelium factor=POLR2A\ track encTfChipPkENCFF930NQQ\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_tpm_rev MyoblastToMyotubes_Day06D1- bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_reverse 1 1056 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14591.13501-145C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13501-145C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_ctss_rev MyoblastToMyotubes_Day06D1- bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_reverse 0 1056 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14591.13501-145C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13501-145C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF777ODE lungFibro CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_lung from ENCODE 3 (ENCFF777ODE) 0 1057 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_lung from ENCODE 3 (ENCFF777ODE)\ parent encTfChipPk off\ shortLabel lungFibro CTCF 1\ subGroups cellType=fibroblast_of_lung factor=CTCF\ track encTfChipPkENCFF777ODE\ MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_tpm_fwd MyoblastToMyotubes_Day06D2+ bigWig Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_forward 1 1057 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor2.CNhs14573.13483-145A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13483-145A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_ctss_fwd MyoblastToMyotubes_Day06D2+ bigWig Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_forward 0 1057 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor2.CNhs14573.13483-145A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13483-145A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF218LOB lungFibro CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_lung from ENCODE 3 (ENCFF218LOB) 0 1058 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_lung from ENCODE 3 (ENCFF218LOB)\ parent encTfChipPk off\ shortLabel lungFibro CTCF 2\ subGroups cellType=fibroblast_of_lung factor=CTCF\ track encTfChipPkENCFF218LOB\ MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_tpm_rev MyoblastToMyotubes_Day06D2- bigWig Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_reverse 1 1058 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor2.CNhs14573.13483-145A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13483-145A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_ctss_rev MyoblastToMyotubes_Day06D2- bigWig Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_reverse 0 1058 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor2.CNhs14573.13483-145A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13483-145A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF196CRQ mamryGlFibro CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_mammary_gland from ENCODE 3 (ENCFF196CRQ) 0 1059 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_mammary_gland from ENCODE 3 (ENCFF196CRQ)\ parent encTfChipPk off\ shortLabel mamryGlFibro CTCF\ subGroups cellType=fibroblast_of_mammary_gland factor=CTCF\ track encTfChipPkENCFF196CRQ\ MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_tpm_fwd MyoblastToMyotubes_Day06D3+ bigWig Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_forward 1 1059 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor3.CNhs14582.13492-145B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13492-145B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_ctss_fwd MyoblastToMyotubes_Day06D3+ bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_forward 0 1059 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14610.13519-145E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13519-145E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_tpm_fwd MyoblastToMyotubes_Day06D3+ bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_forward 1 1060 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14610.13519-145E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13519-145E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_ctss_fwd MyoblastToMyotubes_Day06D3+ bigWig Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_forward 0 1060 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor3.CNhs14582.13492-145B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13492-145B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF093QTY plArtryFibro CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_pulmonary_artery from ENCODE 3 (ENCFF093QTY) 0 1060 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_pulmonary_artery from ENCODE 3 (ENCFF093QTY)\ parent encTfChipPk off\ shortLabel plArtryFibro CTCF\ subGroups cellType=fibroblast_of_pulmonary_artery factor=CTCF\ track encTfChipPkENCFF093QTY\ encTfChipPkENCFF322FBH aortaAdFibro CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_the_aortic_adventitia from ENCODE 3 (ENCFF322FBH) 0 1061 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_the_aortic_adventitia from ENCODE 3 (ENCFF322FBH)\ parent encTfChipPk off\ shortLabel aortaAdFibro CTCF\ subGroups cellType=fibroblast_of_the_aortic_adventitia factor=CTCF\ track encTfChipPkENCFF322FBH\ MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_tpm_rev MyoblastToMyotubes_Day06D3- bigWig Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_reverse 1 1061 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor3.CNhs14582.13492-145B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13492-145B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_ctss_rev MyoblastToMyotubes_Day06D3- bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_reverse 0 1061 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14610.13519-145E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13519-145E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_tpm_rev MyoblastToMyotubes_Day06D3- bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_reverse 1 1062 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14610.13519-145E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13519-145E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_ctss_rev MyoblastToMyotubes_Day06D3- bigWig Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_reverse 0 1062 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor3.CNhs14582.13492-145B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13492-145B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF032BJW vlMesenFibro CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_villous_mesenchyme from ENCODE 3 (ENCFF032BJW) 0 1062 255 184 85 255 219 170 0 0 0 regulation 1 color 255,184,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_villous_mesenchyme from ENCODE 3 (ENCFF032BJW)\ parent encTfChipPk off\ shortLabel vlMesenFibro CTCF\ subGroups cellType=fibroblast_of_villous_mesenchyme factor=CTCF\ track encTfChipPkENCFF032BJW\ encTfChipPkENCFF178FRI frsknFibro CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in foreskin_fibroblast from ENCODE 3 (ENCFF178FRI) 0 1063 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in foreskin_fibroblast from ENCODE 3 (ENCFF178FRI)\ parent encTfChipPk off\ shortLabel frsknFibro CTCF 1\ subGroups cellType=foreskin_fibroblast factor=CTCF\ track encTfChipPkENCFF178FRI\ MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_tpm_fwd MyoblastToMyotubes_Day08D1+ bigWig Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_forward 1 1063 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor1.CNhs13853.13475-145A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13475-145A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_ctss_fwd MyoblastToMyotubes_Day08D1+ bigWig Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_forward 0 1063 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor1.CNhs13853.13475-145A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13475-145A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF273NIW frsknFibro CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in foreskin_fibroblast from ENCODE 3 (ENCFF273NIW) 0 1064 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in foreskin_fibroblast from ENCODE 3 (ENCFF273NIW)\ parent encTfChipPk off\ shortLabel frsknFibro CTCF 2\ subGroups cellType=foreskin_fibroblast factor=CTCF\ track encTfChipPkENCFF273NIW\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_tpm_fwd MyoblastToMyotubes_Day08D1+ bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_forward 1 1064 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14592.13502-145D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13502-145D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_ctss_fwd MyoblastToMyotubes_Day08D1+ bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_forward 0 1064 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14592.13502-145D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13502-145D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF349RNE frskinKrtn CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in foreskin_keratinocyte from ENCODE 3 (ENCFF349RNE) 0 1065 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in foreskin_keratinocyte from ENCODE 3 (ENCFF349RNE)\ parent encTfChipPk off\ shortLabel frskinKrtn CTCF 1\ subGroups cellType=foreskin_keratinocyte factor=CTCF\ track encTfChipPkENCFF349RNE\ MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_tpm_rev MyoblastToMyotubes_Day08D1- bigWig Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_reverse 1 1065 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor1.CNhs13853.13475-145A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13475-145A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_ctss_rev MyoblastToMyotubes_Day08D1- bigWig Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_reverse 0 1065 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor1.CNhs13853.13475-145A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13475-145A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF236RJT frskinKrtn CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in foreskin_keratinocyte from ENCODE 3 (ENCFF236RJT) 0 1066 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in foreskin_keratinocyte from ENCODE 3 (ENCFF236RJT)\ parent encTfChipPk off\ shortLabel frskinKrtn CTCF 2\ subGroups cellType=foreskin_keratinocyte factor=CTCF\ track encTfChipPkENCFF236RJT\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_tpm_rev MyoblastToMyotubes_Day08D1- bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_reverse 1 1066 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14592.13502-145D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13502-145D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_ctss_rev MyoblastToMyotubes_Day08D1- bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_reverse 0 1066 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14592.13502-145D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13502-145D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF060WTK frskinKrtn CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in foreskin_keratinocyte from ENCODE 3 (ENCFF060WTK) 0 1067 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in foreskin_keratinocyte from ENCODE 3 (ENCFF060WTK)\ parent encTfChipPk off\ shortLabel frskinKrtn CTCF 3\ subGroups cellType=foreskin_keratinocyte factor=CTCF\ track encTfChipPkENCFF060WTK\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_tpm_fwd MyoblastToMyotubes_Day08D2+ bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_forward 1 1067 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14602.13511-145E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13511-145E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_ctss_fwd MyoblastToMyotubes_Day08D2+ bigWig Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_forward 0 1067 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor2.CNhs14574.13484-145B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13484-145B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF281XHU gastrocMed CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in gastrocnemius_medialis from ENCODE 3 (ENCFF281XHU) 0 1068 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in gastrocnemius_medialis from ENCODE 3 (ENCFF281XHU)\ parent encTfChipPk off\ shortLabel gastrocMed CTCF 1\ subGroups cellType=gastrocnemius_medialis factor=CTCF\ track encTfChipPkENCFF281XHU\ MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_tpm_fwd MyoblastToMyotubes_Day08D2+ bigWig Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_forward 1 1068 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor2.CNhs14574.13484-145B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13484-145B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_ctss_fwd MyoblastToMyotubes_Day08D2+ bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_forward 0 1068 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14602.13511-145E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13511-145E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF016OGE gastrocMed CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in gastrocnemius_medialis from ENCODE 3 (ENCFF016OGE) 0 1069 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in gastrocnemius_medialis from ENCODE 3 (ENCFF016OGE)\ parent encTfChipPk off\ shortLabel gastrocMed CTCF 2\ subGroups cellType=gastrocnemius_medialis factor=CTCF\ track encTfChipPkENCFF016OGE\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_tpm_rev MyoblastToMyotubes_Day08D2- bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_reverse 1 1069 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14602.13511-145E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13511-145E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_ctss_rev MyoblastToMyotubes_Day08D2- bigWig Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_reverse 0 1069 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor2.CNhs14574.13484-145B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13484-145B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF100SKI gastrocMed CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in gastrocnemius_medialis from ENCODE 3 (ENCFF100SKI) 0 1070 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in gastrocnemius_medialis from ENCODE 3 (ENCFF100SKI)\ parent encTfChipPk off\ shortLabel gastrocMed CTCF 3\ subGroups cellType=gastrocnemius_medialis factor=CTCF\ track encTfChipPkENCFF100SKI\ MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_tpm_rev MyoblastToMyotubes_Day08D2- bigWig Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_reverse 1 1070 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor2.CNhs14574.13484-145B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13484-145B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_ctss_rev MyoblastToMyotubes_Day08D2- bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_reverse 0 1070 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14602.13511-145E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13511-145E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF089XKW gstrcMed POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in gastrocnemius_medialis from ENCODE 3 (ENCFF089XKW) 0 1071 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in gastrocnemius_medialis from ENCODE 3 (ENCFF089XKW)\ parent encTfChipPk off\ shortLabel gstrcMed POLR2A 1\ subGroups cellType=gastrocnemius_medialis factor=POLR2A\ track encTfChipPkENCFF089XKW\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_tpm_fwd MyoblastToMyotubes_Day08D3+ bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_forward 1 1071 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14611.13520-145F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13520-145F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_ctss_fwd MyoblastToMyotubes_Day08D3+ bigWig Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_forward 0 1071 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor3.CNhs14583.13493-145C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13493-145C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF227YCI gstrcMed POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in gastrocnemius_medialis from ENCODE 3 (ENCFF227YCI) 0 1072 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in gastrocnemius_medialis from ENCODE 3 (ENCFF227YCI)\ parent encTfChipPk off\ shortLabel gstrcMed POLR2A 2\ subGroups cellType=gastrocnemius_medialis factor=POLR2A\ track encTfChipPkENCFF227YCI\ MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_tpm_fwd MyoblastToMyotubes_Day08D3+ bigWig Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_forward 1 1072 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor3.CNhs14583.13493-145C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13493-145C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_ctss_fwd MyoblastToMyotubes_Day08D3+ bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_forward 0 1072 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14611.13520-145F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13520-145F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF973KKY gstEsphSph CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in gastroesophageal_sphincter from ENCODE 3 (ENCFF973KKY) 0 1073 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in gastroesophageal_sphincter from ENCODE 3 (ENCFF973KKY)\ parent encTfChipPk off\ shortLabel gstEsphSph CTCF 1\ subGroups cellType=gastroesophageal_sphincter factor=CTCF\ track encTfChipPkENCFF973KKY\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_tpm_rev MyoblastToMyotubes_Day08D3- bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_reverse 1 1073 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14611.13520-145F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13520-145F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_ctss_rev MyoblastToMyotubes_Day08D3- bigWig Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_reverse 0 1073 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor3.CNhs14583.13493-145C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13493-145C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF951SRP gstEsphSph CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in gastroesophageal_sphincter from ENCODE 3 (ENCFF951SRP) 0 1074 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in gastroesophageal_sphincter from ENCODE 3 (ENCFF951SRP)\ parent encTfChipPk off\ shortLabel gstEsphSph CTCF 2\ subGroups cellType=gastroesophageal_sphincter factor=CTCF\ track encTfChipPkENCFF951SRP\ MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_tpm_rev MyoblastToMyotubes_Day08D3- bigWig Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_reverse 1 1074 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor3.CNhs14583.13493-145C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13493-145C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_ctss_rev MyoblastToMyotubes_Day08D3- bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_reverse 0 1074 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14611.13520-145F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13520-145F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF992XPI gsEsphSph EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in gastroesophageal_sphincter from ENCODE 3 (ENCFF992XPI) 0 1075 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in gastroesophageal_sphincter from ENCODE 3 (ENCFF992XPI)\ parent encTfChipPk off\ shortLabel gsEsphSph EP300 1\ subGroups cellType=gastroesophageal_sphincter factor=EP300\ track encTfChipPkENCFF992XPI\ MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_tpm_fwd MyoblastToMyotubes_Day10D1+ bigWig Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_forward 1 1075 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor1.CNhs13854.13476-145A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13476-145A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_ctss_fwd MyoblastToMyotubes_Day10D1+ bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_forward 0 1075 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14594.13503-145D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13503-145D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF481USU gsEsphSph EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in gastroesophageal_sphincter from ENCODE 3 (ENCFF481USU) 0 1076 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in gastroesophageal_sphincter from ENCODE 3 (ENCFF481USU)\ parent encTfChipPk off\ shortLabel gsEsphSph EP300 2\ subGroups cellType=gastroesophageal_sphincter factor=EP300\ track encTfChipPkENCFF481USU\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_tpm_fwd MyoblastToMyotubes_Day10D1+ bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_forward 1 1076 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14594.13503-145D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13503-145D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_ctss_fwd MyoblastToMyotubes_Day10D1+ bigWig Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_forward 0 1076 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor1.CNhs13854.13476-145A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13476-145A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF291RDN gsEsphSph EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in gastroesophageal_sphincter from ENCODE 3 (ENCFF291RDN) 0 1077 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in gastroesophageal_sphincter from ENCODE 3 (ENCFF291RDN)\ parent encTfChipPk off\ shortLabel gsEsphSph EP300 3\ subGroups cellType=gastroesophageal_sphincter factor=EP300\ track encTfChipPkENCFF291RDN\ MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_tpm_rev MyoblastToMyotubes_Day10D1- bigWig Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_reverse 1 1077 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor1.CNhs13854.13476-145A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13476-145A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_ctss_rev MyoblastToMyotubes_Day10D1- bigWig Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_reverse 0 1077 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor1.CNhs13854.13476-145A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13476-145A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF835VAP gEsphSph POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in gastroesophageal_sphincter from ENCODE 3 (ENCFF835VAP) 0 1078 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in gastroesophageal_sphincter from ENCODE 3 (ENCFF835VAP)\ parent encTfChipPk off\ shortLabel gEsphSph POLR2A 1\ subGroups cellType=gastroesophageal_sphincter factor=POLR2A\ track encTfChipPkENCFF835VAP\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_tpm_rev MyoblastToMyotubes_Day10D1- bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_reverse 1 1078 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14594.13503-145D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13503-145D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_ctss_rev MyoblastToMyotubes_Day10D1- bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_reverse 0 1078 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14594.13503-145D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13503-145D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF128UUT gEsphSph POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in gastroesophageal_sphincter from ENCODE 3 (ENCFF128UUT) 0 1079 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in gastroesophageal_sphincter from ENCODE 3 (ENCFF128UUT)\ parent encTfChipPk off\ shortLabel gEsphSph POLR2A 2\ subGroups cellType=gastroesophageal_sphincter factor=POLR2A\ track encTfChipPkENCFF128UUT\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_tpm_fwd MyoblastToMyotubes_Day10D2+ bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_forward 1 1079 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14603.13512-145E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13512-145E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_ctss_fwd MyoblastToMyotubes_Day10D2+ bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_forward 0 1079 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14603.13512-145E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13512-145E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF530FGP gEsphSph POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in gastroesophageal_sphincter from ENCODE 3 (ENCFF530FGP) 0 1080 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in gastroesophageal_sphincter from ENCODE 3 (ENCFF530FGP)\ parent encTfChipPk off\ shortLabel gEsphSph POLR2A 3\ subGroups cellType=gastroesophageal_sphincter factor=POLR2A\ track encTfChipPkENCFF530FGP\ MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_tpm_fwd MyoblastToMyotubes_Day10D2+ bigWig Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_forward 1 1080 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor2.CNhs14575.13485-145B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13485-145B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_ctss_fwd MyoblastToMyotubes_Day10D2+ bigWig Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_forward 0 1080 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor2.CNhs14575.13485-145B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13485-145B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF552XDP heartLftVent CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in heart_left_ventricle from ENCODE 3 (ENCFF552XDP) 0 1081 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in heart_left_ventricle from ENCODE 3 (ENCFF552XDP)\ parent encTfChipPk off\ shortLabel heartLftVent CTCF\ subGroups cellType=heart_left_ventricle factor=CTCF\ track encTfChipPkENCFF552XDP\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_tpm_rev MyoblastToMyotubes_Day10D2- bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_reverse 1 1081 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14603.13512-145E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13512-145E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_ctss_rev MyoblastToMyotubes_Day10D2- bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_reverse 0 1081 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14603.13512-145E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13512-145E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF156SPI hrtLfVnt POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in heart_left_ventricle from ENCODE 3 (ENCFF156SPI) 0 1082 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in heart_left_ventricle from ENCODE 3 (ENCFF156SPI)\ parent encTfChipPk off\ shortLabel hrtLfVnt POLR2A 1\ subGroups cellType=heart_left_ventricle factor=POLR2A\ track encTfChipPkENCFF156SPI\ MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_tpm_rev MyoblastToMyotubes_Day10D2- bigWig Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_reverse 1 1082 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor2.CNhs14575.13485-145B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13485-145B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_ctss_rev MyoblastToMyotubes_Day10D2- bigWig Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_reverse 0 1082 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor2.CNhs14575.13485-145B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13485-145B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF226GKH hrtLfVnt POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in heart_left_ventricle from ENCODE 3 (ENCFF226GKH) 0 1083 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in heart_left_ventricle from ENCODE 3 (ENCFF226GKH)\ parent encTfChipPk off\ shortLabel hrtLfVnt POLR2A 2\ subGroups cellType=heart_left_ventricle factor=POLR2A\ track encTfChipPkENCFF226GKH\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_tpm_fwd MyoblastToMyotubes_Day10D3+ bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_forward 1 1083 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14612.13521-145F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13521-145F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_ctss_fwd MyoblastToMyotubes_Day10D3+ bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_forward 0 1083 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14612.13521-145F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13521-145F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF846FYU hepatocyte CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in hepatocyte from ENCODE 3 (ENCFF846FYU) 0 1084 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in hepatocyte from ENCODE 3 (ENCFF846FYU)\ parent encTfChipPk off\ shortLabel hepatocyte CTCF\ subGroups cellType=hepatocyte factor=CTCF\ track encTfChipPkENCFF846FYU\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_tpm_rev MyoblastToMyotubes_Day10D3- bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_reverse 1 1084 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14612.13521-145F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13521-145F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_ctss_rev MyoblastToMyotubes_Day10D3- bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_reverse 0 1084 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14612.13521-145F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13521-145F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF324UNA hepatocyte EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in hepatocyte from ENCODE 3 (ENCFF324UNA) 0 1085 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in hepatocyte from ENCODE 3 (ENCFF324UNA)\ parent encTfChipPk off\ shortLabel hepatocyte EZH2\ subGroups cellType=hepatocyte factor=EZH2\ track encTfChipPkENCFF324UNA\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_tpm_fwd MyoblastToMyotubes_Day12D1+ bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_forward 1 1085 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14595.13504-145D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13504-145D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_ctss_fwd MyoblastToMyotubes_Day12D1+ bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_forward 0 1085 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14595.13504-145D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13504-145D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF028IIR keratinocyte CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in keratinocyte from ENCODE 3 (ENCFF028IIR) 0 1086 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in keratinocyte from ENCODE 3 (ENCFF028IIR)\ parent encTfChipPk off\ shortLabel keratinocyte CTCF\ subGroups cellType=keratinocyte factor=CTCF\ track encTfChipPkENCFF028IIR\ MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_tpm_fwd MyoblastToMyotubes_Day12D1+ bigWig Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_forward 1 1086 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor1.CNhs14566.13477-145A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13477-145A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_ctss_fwd MyoblastToMyotubes_Day12D1+ bigWig Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_forward 0 1086 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor1.CNhs14566.13477-145A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13477-145A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF674KUN kidneyEpith CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in kidney_epithelial_cell from ENCODE 3 (ENCFF674KUN) 0 1087 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in kidney_epithelial_cell from ENCODE 3 (ENCFF674KUN)\ parent encTfChipPk off\ shortLabel kidneyEpith CTCF\ subGroups cellType=kidney_epithelial_cell factor=CTCF\ track encTfChipPkENCFF674KUN\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_tpm_rev MyoblastToMyotubes_Day12D1- bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_reverse 1 1087 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14595.13504-145D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13504-145D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_ctss_rev MyoblastToMyotubes_Day12D1- bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_reverse 0 1087 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14595.13504-145D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13504-145D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF782SGI liver ATF3 1 narrowPeak Transcription Factor ChIP-seq Peaks of ATF3 in liver from ENCODE 3 (ENCFF782SGI) 0 1088 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ATF3 in liver from ENCODE 3 (ENCFF782SGI)\ parent encTfChipPk off\ shortLabel liver ATF3 1\ subGroups cellType=liver factor=ATF3\ track encTfChipPkENCFF782SGI\ MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_tpm_rev MyoblastToMyotubes_Day12D1- bigWig Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_reverse 1 1088 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor1.CNhs14566.13477-145A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13477-145A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_ctss_rev MyoblastToMyotubes_Day12D1- bigWig Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_reverse 0 1088 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor1.CNhs14566.13477-145A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13477-145A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF146URA liver ATF3 2 narrowPeak Transcription Factor ChIP-seq Peaks of ATF3 in liver from ENCODE 3 (ENCFF146URA) 0 1089 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ATF3 in liver from ENCODE 3 (ENCFF146URA)\ parent encTfChipPk off\ shortLabel liver ATF3 2\ subGroups cellType=liver factor=ATF3\ track encTfChipPkENCFF146URA\ MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_tpm_fwd MyoblastToMyotubes_Day12D2+ bigWig Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_forward 1 1089 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor2.CNhs14576.13486-145B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13486-145B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_ctss_fwd MyoblastToMyotubes_Day12D2+ bigWig Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_forward 0 1089 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor2.CNhs14576.13486-145B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13486-145B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF143HEE liver CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in liver from ENCODE 3 (ENCFF143HEE) 0 1090 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in liver from ENCODE 3 (ENCFF143HEE)\ parent encTfChipPk off\ shortLabel liver CTCF\ subGroups cellType=liver factor=CTCF\ track encTfChipPkENCFF143HEE\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_tpm_fwd MyoblastToMyotubes_Day12D2+ bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_forward 1 1090 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14604.13513-145E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13513-145E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_ctss_fwd MyoblastToMyotubes_Day12D2+ bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_forward 0 1090 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14604.13513-145E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13513-145E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF808WST liver EGR1 1 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in liver from ENCODE 3 (ENCFF808WST) 0 1091 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EGR1 in liver from ENCODE 3 (ENCFF808WST)\ parent encTfChipPk off\ shortLabel liver EGR1 1\ subGroups cellType=liver factor=EGR1\ track encTfChipPkENCFF808WST\ MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_tpm_rev MyoblastToMyotubes_Day12D2- bigWig Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_reverse 1 1091 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor2.CNhs14576.13486-145B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13486-145B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_ctss_rev MyoblastToMyotubes_Day12D2- bigWig Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_reverse 0 1091 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor2.CNhs14576.13486-145B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13486-145B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF617JQS liver EGR1 2 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in liver from ENCODE 3 (ENCFF617JQS) 0 1092 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EGR1 in liver from ENCODE 3 (ENCFF617JQS)\ parent encTfChipPk off\ shortLabel liver EGR1 2\ subGroups cellType=liver factor=EGR1\ track encTfChipPkENCFF617JQS\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_tpm_rev MyoblastToMyotubes_Day12D2- bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_reverse 1 1092 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14604.13513-145E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13513-145E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_ctss_rev MyoblastToMyotubes_Day12D2- bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_reverse 0 1092 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14604.13513-145E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13513-145E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF951VPZ liver FOXA1 1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in liver from ENCODE 3 (ENCFF951VPZ) 0 1093 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in liver from ENCODE 3 (ENCFF951VPZ)\ parent encTfChipPk off\ shortLabel liver FOXA1 1\ subGroups cellType=liver factor=FOXA1\ track encTfChipPkENCFF951VPZ\ MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_tpm_fwd MyoblastToMyotubes_Day12D3+ bigWig Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_forward 1 1093 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor3.CNhs14585.13495-145C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13495-145C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_ctss_fwd MyoblastToMyotubes_Day12D3+ bigWig Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_forward 0 1093 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor3.CNhs14585.13495-145C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13495-145C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF324QGE liver FOXA1 2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in liver from ENCODE 3 (ENCFF324QGE) 0 1094 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in liver from ENCODE 3 (ENCFF324QGE)\ parent encTfChipPk off\ shortLabel liver FOXA1 2\ subGroups cellType=liver factor=FOXA1\ track encTfChipPkENCFF324QGE\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_tpm_fwd MyoblastToMyotubes_Day12D3+ bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_forward 1 1094 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14613.13522-145F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13522-145F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_ctss_fwd MyoblastToMyotubes_Day12D3+ bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_forward 0 1094 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14613.13522-145F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13522-145F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF168JLI liver FOXA2 1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA2 in liver from ENCODE 3 (ENCFF168JLI) 0 1095 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA2 in liver from ENCODE 3 (ENCFF168JLI)\ parent encTfChipPk off\ shortLabel liver FOXA2 1\ subGroups cellType=liver factor=FOXA2\ track encTfChipPkENCFF168JLI\ MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_tpm_rev MyoblastToMyotubes_Day12D3- bigWig Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_reverse 1 1095 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor3.CNhs14585.13495-145C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13495-145C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_ctss_rev MyoblastToMyotubes_Day12D3- bigWig Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_reverse 0 1095 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor3.CNhs14585.13495-145C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13495-145C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF293LRQ liver FOXA2 2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA2 in liver from ENCODE 3 (ENCFF293LRQ) 0 1096 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA2 in liver from ENCODE 3 (ENCFF293LRQ)\ parent encTfChipPk off\ shortLabel liver FOXA2 2\ subGroups cellType=liver factor=FOXA2\ track encTfChipPkENCFF293LRQ\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_tpm_rev MyoblastToMyotubes_Day12D3- bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_reverse 1 1096 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14613.13522-145F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13522-145F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_ctss_rev MyoblastToMyotubes_Day12D3- bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_reverse 0 1096 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14613.13522-145F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13522-145F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF344XWK liver GABPA 1 narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in liver from ENCODE 3 (ENCFF344XWK) 0 1097 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GABPA in liver from ENCODE 3 (ENCFF344XWK)\ parent encTfChipPk off\ shortLabel liver GABPA 1\ subGroups cellType=liver factor=GABPA\ track encTfChipPkENCFF344XWK\ AdipocyteDifferentiationDay04Donor1_CNhs12516_tpm_fwd Tc:AdipoDiff_Day04D1+ bigWig Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_forward 1 1097 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor1.CNhs12516.13019-139D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13019-139D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D1+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor1_CNhs12516_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor1_CNhs12516_ctss_fwd Tc:AdipoDiff_Day04D1+ bigWig Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_forward 0 1097 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor1.CNhs12516.13019-139D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13019-139D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D1+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor1_CNhs12516_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF280YAF liver GABPA 2 narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in liver from ENCODE 3 (ENCFF280YAF) 0 1098 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GABPA in liver from ENCODE 3 (ENCFF280YAF)\ parent encTfChipPk off\ shortLabel liver GABPA 2\ subGroups cellType=liver factor=GABPA\ track encTfChipPkENCFF280YAF\ AdipocyteDifferentiationDay04Donor1_CNhs12516_tpm_rev Tc:AdipoDiff_Day04D1- bigWig Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_reverse 1 1098 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor1.CNhs12516.13019-139D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13019-139D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D1-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor1_CNhs12516_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor1_CNhs12516_ctss_rev Tc:AdipoDiff_Day04D1- bigWig Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_reverse 0 1098 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor1.CNhs12516.13019-139D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13019-139D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D1-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor1_CNhs12516_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF837QHJ liver HNF4A 1 narrowPeak Transcription Factor ChIP-seq Peaks of HNF4A in liver from ENCODE 3 (ENCFF837QHJ) 0 1099 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of HNF4A in liver from ENCODE 3 (ENCFF837QHJ)\ parent encTfChipPk off\ shortLabel liver HNF4A 1\ subGroups cellType=liver factor=HNF4A\ track encTfChipPkENCFF837QHJ\ AdipocyteDifferentiationDay04Donor2_CNhs13410_tpm_fwd Tc:AdipoDiff_Day04D2+ bigWig Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_forward 1 1099 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor2.CNhs13410.13022-139D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13022-139D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D2+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor2_CNhs13410_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor2_CNhs13410_ctss_fwd Tc:AdipoDiff_Day04D2+ bigWig Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_forward 0 1099 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor2.CNhs13410.13022-139D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13022-139D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D2+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor2_CNhs13410_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF905JAC liver HNF4A 2 narrowPeak Transcription Factor ChIP-seq Peaks of HNF4A in liver from ENCODE 3 (ENCFF905JAC) 0 1100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of HNF4A in liver from ENCODE 3 (ENCFF905JAC)\ parent encTfChipPk off\ shortLabel liver HNF4A 2\ subGroups cellType=liver factor=HNF4A\ track encTfChipPkENCFF905JAC\ AdipocyteDifferentiationDay04Donor2_CNhs13410_tpm_rev Tc:AdipoDiff_Day04D2- bigWig Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_reverse 1 1100 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor2.CNhs13410.13022-139D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13022-139D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D2-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor2_CNhs13410_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor2_CNhs13410_ctss_rev Tc:AdipoDiff_Day04D2- bigWig Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_reverse 0 1100 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor2.CNhs13410.13022-139D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13022-139D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D2-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor2_CNhs13410_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF497MUF liver HNF4G narrowPeak Transcription Factor ChIP-seq Peaks of HNF4G in liver from ENCODE 3 (ENCFF497MUF) 0 1101 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of HNF4G in liver from ENCODE 3 (ENCFF497MUF)\ parent encTfChipPk off\ shortLabel liver HNF4G\ subGroups cellType=liver factor=HNF4G\ track encTfChipPkENCFF497MUF\ AdipocyteDifferentiationDay04Donor3_CNhs13413_tpm_fwd Tc:AdipoDiff_Day04D3+ bigWig Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_forward 1 1101 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor3.CNhs13413.13025-139E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13025-139E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D3+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor3_CNhs13413_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor3_CNhs13413_ctss_fwd Tc:AdipoDiff_Day04D3+ bigWig Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_forward 0 1101 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor3.CNhs13413.13025-139E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13025-139E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D3+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor3_CNhs13413_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF420PED liver JUND 1 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in liver from ENCODE 3 (ENCFF420PED) 0 1102 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of JUND in liver from ENCODE 3 (ENCFF420PED)\ parent encTfChipPk off\ shortLabel liver JUND 1\ subGroups cellType=liver factor=JUND\ track encTfChipPkENCFF420PED\ AdipocyteDifferentiationDay04Donor3_CNhs13413_tpm_rev Tc:AdipoDiff_Day04D3- bigWig Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_reverse 1 1102 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor3.CNhs13413.13025-139E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13025-139E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D3-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor3_CNhs13413_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor3_CNhs13413_ctss_rev Tc:AdipoDiff_Day04D3- bigWig Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_reverse 0 1102 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor3.CNhs13413.13025-139E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13025-139E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D3-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor3_CNhs13413_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF229COM liver JUND 2 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in liver from ENCODE 3 (ENCFF229COM) 0 1103 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of JUND in liver from ENCODE 3 (ENCFF229COM)\ parent encTfChipPk off\ shortLabel liver JUND 2\ subGroups cellType=liver factor=JUND\ track encTfChipPkENCFF229COM\ AdipocyteDifferentiationDay04Donor4_CNhs13417_tpm_fwd Tc:AdipoDiff_Day04D4+ bigWig Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_forward 1 1103 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor4.CNhs13417.13028-139E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13028-139E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D4+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor4_CNhs13417_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor4_CNhs13417_ctss_fwd Tc:AdipoDiff_Day04D4+ bigWig Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_forward 0 1103 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor4.CNhs13417.13028-139E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13028-139E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D4+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor4_CNhs13417_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF493ZMX liver MAX 1 narrowPeak Transcription Factor ChIP-seq Peaks of MAX in liver from ENCODE 3 (ENCFF493ZMX) 0 1104 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MAX in liver from ENCODE 3 (ENCFF493ZMX)\ parent encTfChipPk off\ shortLabel liver MAX 1\ subGroups cellType=liver factor=MAX\ track encTfChipPkENCFF493ZMX\ AdipocyteDifferentiationDay04Donor4_CNhs13417_tpm_rev Tc:AdipoDiff_Day04D4- bigWig Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_reverse 1 1104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor4.CNhs13417.13028-139E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13028-139E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D4-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor4_CNhs13417_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor4_CNhs13417_ctss_rev Tc:AdipoDiff_Day04D4- bigWig Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_reverse 0 1104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor4.CNhs13417.13028-139E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13028-139E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D4-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor4_CNhs13417_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF669BQN liver MAX 2 narrowPeak Transcription Factor ChIP-seq Peaks of MAX in liver from ENCODE 3 (ENCFF669BQN) 0 1105 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MAX in liver from ENCODE 3 (ENCFF669BQN)\ parent encTfChipPk off\ shortLabel liver MAX 2\ subGroups cellType=liver factor=MAX\ track encTfChipPkENCFF669BQN\ AdipocyteDifferentiationDay08Donor1_CNhs12517_tpm_fwd Tc:AdipoDiff_Day08D1+ bigWig Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_forward 1 1105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor1.CNhs12517.13020-139D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13020-139D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D1+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor1_CNhs12517_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor1_CNhs12517_ctss_fwd Tc:AdipoDiff_Day08D1+ bigWig Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_forward 0 1105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor1.CNhs12517.13020-139D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13020-139D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D1+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor1_CNhs12517_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF379TVQ liver NR2F2 1 narrowPeak Transcription Factor ChIP-seq Peaks of NR2F2 in liver from ENCODE 3 (ENCFF379TVQ) 0 1106 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NR2F2 in liver from ENCODE 3 (ENCFF379TVQ)\ parent encTfChipPk off\ shortLabel liver NR2F2 1\ subGroups cellType=liver factor=NR2F2\ track encTfChipPkENCFF379TVQ\ AdipocyteDifferentiationDay08Donor1_CNhs12517_tpm_rev Tc:AdipoDiff_Day08D1- bigWig Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_reverse 1 1106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor1.CNhs12517.13020-139D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13020-139D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D1-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor1_CNhs12517_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor1_CNhs12517_ctss_rev Tc:AdipoDiff_Day08D1- bigWig Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_reverse 0 1106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor1.CNhs12517.13020-139D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13020-139D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D1-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor1_CNhs12517_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF819WNB liver NR2F2 2 narrowPeak Transcription Factor ChIP-seq Peaks of NR2F2 in liver from ENCODE 3 (ENCFF819WNB) 0 1107 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NR2F2 in liver from ENCODE 3 (ENCFF819WNB)\ parent encTfChipPk off\ shortLabel liver NR2F2 2\ subGroups cellType=liver factor=NR2F2\ track encTfChipPkENCFF819WNB\ AdipocyteDifferentiationDay08Donor2_CNhs13411_tpm_fwd Tc:AdipoDiff_Day08D2+ bigWig Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_forward 1 1107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor2.CNhs13411.13023-139D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13023-139D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D2+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor2_CNhs13411_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor2_CNhs13411_ctss_fwd Tc:AdipoDiff_Day08D2+ bigWig Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_forward 0 1107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor2.CNhs13411.13023-139D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13023-139D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D2+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor2_CNhs13411_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF229WFR liver RAD21 1 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in liver from ENCODE 3 (ENCFF229WFR) 0 1108 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD21 in liver from ENCODE 3 (ENCFF229WFR)\ parent encTfChipPk off\ shortLabel liver RAD21 1\ subGroups cellType=liver factor=RAD21\ track encTfChipPkENCFF229WFR\ AdipocyteDifferentiationDay08Donor2_CNhs13411_tpm_rev Tc:AdipoDiff_Day08D2- bigWig Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_reverse 1 1108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor2.CNhs13411.13023-139D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13023-139D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D2-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor2_CNhs13411_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor2_CNhs13411_ctss_rev Tc:AdipoDiff_Day08D2- bigWig Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_reverse 0 1108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor2.CNhs13411.13023-139D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13023-139D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D2-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor2_CNhs13411_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF295GOD liver RAD21 2 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in liver from ENCODE 3 (ENCFF295GOD) 0 1109 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD21 in liver from ENCODE 3 (ENCFF295GOD)\ parent encTfChipPk off\ shortLabel liver RAD21 2\ subGroups cellType=liver factor=RAD21\ track encTfChipPkENCFF295GOD\ AdipocyteDifferentiationDay08Donor3_CNhs13415_tpm_fwd Tc:AdipoDiff_Day08D3+ bigWig Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_forward 1 1109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor3.CNhs13415.13026-139E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13026-139E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D3+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor3_CNhs13415_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor3_CNhs13415_ctss_fwd Tc:AdipoDiff_Day08D3+ bigWig Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_forward 0 1109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor3.CNhs13415.13026-139E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13026-139E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D3+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor3_CNhs13415_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF315BSV liver RAD21 3 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in liver from ENCODE 3 (ENCFF315BSV) 0 1110 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD21 in liver from ENCODE 3 (ENCFF315BSV)\ parent encTfChipPk off\ shortLabel liver RAD21 3\ subGroups cellType=liver factor=RAD21\ track encTfChipPkENCFF315BSV\ AdipocyteDifferentiationDay08Donor3_CNhs13415_tpm_rev Tc:AdipoDiff_Day08D3- bigWig Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_reverse 1 1110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor3.CNhs13415.13026-139E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13026-139E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D3-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor3_CNhs13415_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor3_CNhs13415_ctss_rev Tc:AdipoDiff_Day08D3- bigWig Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_reverse 0 1110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor3.CNhs13415.13026-139E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13026-139E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D3-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor3_CNhs13415_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF178WRO liver REST 1 narrowPeak Transcription Factor ChIP-seq Peaks of REST in liver from ENCODE 3 (ENCFF178WRO) 0 1111 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of REST in liver from ENCODE 3 (ENCFF178WRO)\ parent encTfChipPk off\ shortLabel liver REST 1\ subGroups cellType=liver factor=REST\ track encTfChipPkENCFF178WRO\ AdipocyteDifferentiationDay08Donor4_CNhs13418_tpm_fwd Tc:AdipoDiff_Day08D4+ bigWig Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_forward 1 1111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor4.CNhs13418.13029-139E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13029-139E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D4+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor4_CNhs13418_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor4_CNhs13418_ctss_fwd Tc:AdipoDiff_Day08D4+ bigWig Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_forward 0 1111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor4.CNhs13418.13029-139E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13029-139E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D4+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor4_CNhs13418_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF288XHG liver REST 2 narrowPeak Transcription Factor ChIP-seq Peaks of REST in liver from ENCODE 3 (ENCFF288XHG) 0 1112 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of REST in liver from ENCODE 3 (ENCFF288XHG)\ parent encTfChipPk off\ shortLabel liver REST 2\ subGroups cellType=liver factor=REST\ track encTfChipPkENCFF288XHG\ AdipocyteDifferentiationDay08Donor4_CNhs13418_tpm_rev Tc:AdipoDiff_Day08D4- bigWig Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_reverse 1 1112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor4.CNhs13418.13029-139E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13029-139E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D4-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor4_CNhs13418_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor4_CNhs13418_ctss_rev Tc:AdipoDiff_Day08D4- bigWig Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_reverse 0 1112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor4.CNhs13418.13029-139E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13029-139E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D4-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor4_CNhs13418_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF201KGJ liver RXRA 1 narrowPeak Transcription Factor ChIP-seq Peaks of RXRA in liver from ENCODE 3 (ENCFF201KGJ) 0 1113 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RXRA in liver from ENCODE 3 (ENCFF201KGJ)\ parent encTfChipPk off\ shortLabel liver RXRA 1\ subGroups cellType=liver factor=RXRA\ track encTfChipPkENCFF201KGJ\ AdipocyteDifferentiationDay12Donor1_CNhs13336_tpm_fwd Tc:AdipoDiff_Day12D1+ bigWig Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_forward 1 1113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor1.CNhs13336.13021-139D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13021-139D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D1+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor1_CNhs13336_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor1_CNhs13336_ctss_fwd Tc:AdipoDiff_Day12D1+ bigWig Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_forward 0 1113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor1.CNhs13336.13021-139D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13021-139D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D1+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor1_CNhs13336_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF572MCI liver RXRA 2 narrowPeak Transcription Factor ChIP-seq Peaks of RXRA in liver from ENCODE 3 (ENCFF572MCI) 0 1114 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RXRA in liver from ENCODE 3 (ENCFF572MCI)\ parent encTfChipPk off\ shortLabel liver RXRA 2\ subGroups cellType=liver factor=RXRA\ track encTfChipPkENCFF572MCI\ AdipocyteDifferentiationDay12Donor1_CNhs13336_tpm_rev Tc:AdipoDiff_Day12D1- bigWig Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_reverse 1 1114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor1.CNhs13336.13021-139D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13021-139D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D1-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor1_CNhs13336_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor1_CNhs13336_ctss_rev Tc:AdipoDiff_Day12D1- bigWig Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_reverse 0 1114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor1.CNhs13336.13021-139D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13021-139D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D1-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor1_CNhs13336_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF433EFF liver SP1 1 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in liver from ENCODE 3 (ENCFF433EFF) 0 1115 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SP1 in liver from ENCODE 3 (ENCFF433EFF)\ parent encTfChipPk off\ shortLabel liver SP1 1\ subGroups cellType=liver factor=SP1\ track encTfChipPkENCFF433EFF\ AdipocyteDifferentiationDay12Donor2_CNhs13412_tpm_fwd Tc:AdipoDiff_Day12D2+ bigWig Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_forward 1 1115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor2.CNhs13412.13024-139D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13024-139D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D2+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor2_CNhs13412_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor2_CNhs13412_ctss_fwd Tc:AdipoDiff_Day12D2+ bigWig Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_forward 0 1115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor2.CNhs13412.13024-139D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13024-139D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D2+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor2_CNhs13412_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF978TMH liver SP1 2 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in liver from ENCODE 3 (ENCFF978TMH) 0 1116 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SP1 in liver from ENCODE 3 (ENCFF978TMH)\ parent encTfChipPk off\ shortLabel liver SP1 2\ subGroups cellType=liver factor=SP1\ track encTfChipPkENCFF978TMH\ AdipocyteDifferentiationDay12Donor2_CNhs13412_tpm_rev Tc:AdipoDiff_Day12D2- bigWig Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_reverse 1 1116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor2.CNhs13412.13024-139D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13024-139D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D2-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor2_CNhs13412_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor2_CNhs13412_ctss_rev Tc:AdipoDiff_Day12D2- bigWig Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_reverse 0 1116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor2.CNhs13412.13024-139D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13024-139D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D2-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor2_CNhs13412_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF214OJW liver TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in liver from ENCODE 3 (ENCFF214OJW) 0 1117 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TAF1 in liver from ENCODE 3 (ENCFF214OJW)\ parent encTfChipPk off\ shortLabel liver TAF1\ subGroups cellType=liver factor=TAF1\ track encTfChipPkENCFF214OJW\ AdipocyteDifferentiationDay12Donor3_CNhs13416_tpm_fwd Tc:AdipoDiff_Day12D3+ bigWig Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_forward 1 1117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor3.CNhs13416.13027-139E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13027-139E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D3+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor3_CNhs13416_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor3_CNhs13416_ctss_fwd Tc:AdipoDiff_Day12D3+ bigWig Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_forward 0 1117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor3.CNhs13416.13027-139E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13027-139E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D3+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor3_CNhs13416_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF838VFX liver YY1 1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in liver from ENCODE 3 (ENCFF838VFX) 0 1118 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of YY1 in liver from ENCODE 3 (ENCFF838VFX)\ parent encTfChipPk off\ shortLabel liver YY1 1\ subGroups cellType=liver factor=YY1\ track encTfChipPkENCFF838VFX\ AdipocyteDifferentiationDay12Donor3_CNhs13416_tpm_rev Tc:AdipoDiff_Day12D3- bigWig Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_reverse 1 1118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor3.CNhs13416.13027-139E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13027-139E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D3-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor3_CNhs13416_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor3_CNhs13416_ctss_rev Tc:AdipoDiff_Day12D3- bigWig Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_reverse 0 1118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor3.CNhs13416.13027-139E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13027-139E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D3-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor3_CNhs13416_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF459TWF liver YY1 2 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in liver from ENCODE 3 (ENCFF459TWF) 0 1119 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of YY1 in liver from ENCODE 3 (ENCFF459TWF)\ parent encTfChipPk off\ shortLabel liver YY1 2\ subGroups cellType=liver factor=YY1\ track encTfChipPkENCFF459TWF\ AdipocyteDifferentiationDay12Donor4_CNhs13419_tpm_fwd Tc:AdipoDiff_Day12D4+ bigWig Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_forward 1 1119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor4.CNhs13419.13030-139E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13030-139E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D4+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor4_CNhs13419_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor4_CNhs13419_ctss_fwd Tc:AdipoDiff_Day12D4+ bigWig Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_forward 0 1119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor4.CNhs13419.13030-139E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13030-139E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D4+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor4_CNhs13419_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF882UHR liver ZBTB33 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in liver from ENCODE 3 (ENCFF882UHR) 0 1120 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in liver from ENCODE 3 (ENCFF882UHR)\ parent encTfChipPk off\ shortLabel liver ZBTB33 1\ subGroups cellType=liver factor=ZBTB33\ track encTfChipPkENCFF882UHR\ AdipocyteDifferentiationDay12Donor4_CNhs13419_tpm_rev Tc:AdipoDiff_Day12D4- bigWig Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_reverse 1 1120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor4.CNhs13419.13030-139E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13030-139E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D4-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor4_CNhs13419_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor4_CNhs13419_ctss_rev Tc:AdipoDiff_Day12D4- bigWig Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_reverse 0 1120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor4.CNhs13419.13030-139E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13030-139E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D4-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor4_CNhs13419_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF727ZIT liver ZBTB33 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in liver from ENCODE 3 (ENCFF727ZIT) 0 1121 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in liver from ENCODE 3 (ENCFF727ZIT)\ parent encTfChipPk off\ shortLabel liver ZBTB33 2\ subGroups cellType=liver factor=ZBTB33\ track encTfChipPkENCFF727ZIT\ 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_tpm_fwd Tc:293SlamRinderpest_00hrBr1+ bigWig 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_forward 1 1121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14406.13541-145H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13541-145H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_00hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_ctss_fwd Tc:293SlamRinderpest_00hrBr1+ bigWig 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_forward 0 1121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14406.13541-145H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13541-145H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_00hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF912XIE lwrLegSkin CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF912XIE) 0 1122 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF912XIE)\ parent encTfChipPk off\ shortLabel lwrLegSkin CTCF 1\ subGroups cellType=lower_leg_skin factor=CTCF\ track encTfChipPkENCFF912XIE\ 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_tpm_rev Tc:293SlamRinderpest_00hrBr1- bigWig 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_reverse 1 1122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14406.13541-145H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13541-145H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_00hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_ctss_rev Tc:293SlamRinderpest_00hrBr1- bigWig 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_reverse 0 1122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14406.13541-145H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13541-145H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_00hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF846VQK lwrLegSkin CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF846VQK) 0 1123 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF846VQK)\ parent encTfChipPk off\ shortLabel lwrLegSkin CTCF 2\ subGroups cellType=lower_leg_skin factor=CTCF\ track encTfChipPkENCFF846VQK\ 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_tpm_fwd Tc:293SlamRinderpest_00hrBr2+ bigWig 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_forward 1 1123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14407.13542-145H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13542-145H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_00hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_ctss_fwd Tc:293SlamRinderpest_00hrBr2+ bigWig 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_forward 0 1123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14407.13542-145H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13542-145H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_00hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF992DNN lwrLegSkin CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF992DNN) 0 1124 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF992DNN)\ parent encTfChipPk off\ shortLabel lwrLegSkin CTCF 3\ subGroups cellType=lower_leg_skin factor=CTCF\ track encTfChipPkENCFF992DNN\ 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_tpm_rev Tc:293SlamRinderpest_00hrBr2- bigWig 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_reverse 1 1124 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14407.13542-145H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13542-145H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_00hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_ctss_rev Tc:293SlamRinderpest_00hrBr2- bigWig 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_reverse 0 1124 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14407.13542-145H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13542-145H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_00hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF916FGF lwrLegSkin CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF916FGF) 0 1125 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF916FGF)\ parent encTfChipPk off\ shortLabel lwrLegSkin CTCF 4\ subGroups cellType=lower_leg_skin factor=CTCF\ track encTfChipPkENCFF916FGF\ 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_tpm_fwd Tc:293SlamRinderpest_00hrBr3+ bigWig 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_forward 1 1125 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14408.13543-145H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13543-145H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_00hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_ctss_fwd Tc:293SlamRinderpest_00hrBr3+ bigWig 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_forward 0 1125 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14408.13543-145H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13543-145H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_00hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF818GNJ lwrLgSkn POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in lower_leg_skin from ENCODE 3 (ENCFF818GNJ) 0 1126 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in lower_leg_skin from ENCODE 3 (ENCFF818GNJ)\ parent encTfChipPk off\ shortLabel lwrLgSkn POLR2A 1\ subGroups cellType=lower_leg_skin factor=POLR2A\ track encTfChipPkENCFF818GNJ\ 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_tpm_rev Tc:293SlamRinderpest_00hrBr3- bigWig 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_reverse 1 1126 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14408.13543-145H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13543-145H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_00hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_ctss_rev Tc:293SlamRinderpest_00hrBr3- bigWig 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_reverse 0 1126 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14408.13543-145H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13543-145H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_00hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF072MPX lwrLgSkn POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in lower_leg_skin from ENCODE 3 (ENCFF072MPX) 0 1127 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in lower_leg_skin from ENCODE 3 (ENCFF072MPX)\ parent encTfChipPk off\ shortLabel lwrLgSkn POLR2A 2\ subGroups cellType=lower_leg_skin factor=POLR2A\ track encTfChipPkENCFF072MPX\ 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_tpm_fwd Tc:293SlamRinderpest_06hrBr1+ bigWig 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_forward 1 1127 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14410.13544-145H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13544-145H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_06hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_ctss_fwd Tc:293SlamRinderpest_06hrBr1+ bigWig 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_forward 0 1127 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14410.13544-145H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13544-145H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_06hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF493HJH mammaryEpith CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in mammary_epithelial_cell from ENCODE 3 (ENCFF493HJH) 0 1128 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in mammary_epithelial_cell from ENCODE 3 (ENCFF493HJH)\ parent encTfChipPk off\ shortLabel mammaryEpith CTCF\ subGroups cellType=mammary_epithelial_cell factor=CTCF\ track encTfChipPkENCFF493HJH\ 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_tpm_rev Tc:293SlamRinderpest_06hrBr1- bigWig 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_reverse 1 1128 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14410.13544-145H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13544-145H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_06hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_ctss_rev Tc:293SlamRinderpest_06hrBr1- bigWig 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_reverse 0 1128 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14410.13544-145H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13544-145H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_06hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF845NAG medlblastoma CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in medulloblastoma from ENCODE 3 (ENCFF845NAG) 0 1129 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in medulloblastoma from ENCODE 3 (ENCFF845NAG)\ parent encTfChipPk off\ shortLabel medlblastoma CTCF\ subGroups cellType=medulloblastoma factor=CTCF\ track encTfChipPkENCFF845NAG\ 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_tpm_fwd Tc:293SlamRinderpest_06hrBr2+ bigWig 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_forward 1 1129 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14411.13545-145H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13545-145H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_06hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_ctss_fwd Tc:293SlamRinderpest_06hrBr2+ bigWig 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_forward 0 1129 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14411.13545-145H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13545-145H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_06hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF719TNH myotube CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in myotube from ENCODE 3 (ENCFF719TNH) 0 1130 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in myotube from ENCODE 3 (ENCFF719TNH)\ parent encTfChipPk off\ shortLabel myotube CTCF\ subGroups cellType=myotube factor=CTCF\ track encTfChipPkENCFF719TNH\ 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_tpm_rev Tc:293SlamRinderpest_06hrBr2- bigWig 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_reverse 1 1130 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14411.13545-145H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13545-145H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_06hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_ctss_rev Tc:293SlamRinderpest_06hrBr2- bigWig 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_reverse 0 1130 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14411.13545-145H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13545-145H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_06hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF372JOV neuralCell CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in neural_cell from ENCODE 3 (ENCFF372JOV) 0 1131 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in neural_cell from ENCODE 3 (ENCFF372JOV)\ parent encTfChipPk off\ shortLabel neuralCell CTCF\ subGroups cellType=neural_cell factor=CTCF\ track encTfChipPkENCFF372JOV\ 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_tpm_fwd Tc:293SlamRinderpest_06hrBr3+ bigWig 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_forward 1 1131 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14412.13546-145H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13546-145H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_06hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_ctss_fwd Tc:293SlamRinderpest_06hrBr3+ bigWig 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_forward 0 1131 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14412.13546-145H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13546-145H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_06hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF459ARL neuralCell EP300 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in neural_cell from ENCODE 3 (ENCFF459ARL) 0 1132 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in neural_cell from ENCODE 3 (ENCFF459ARL)\ parent encTfChipPk off\ shortLabel neuralCell EP300\ subGroups cellType=neural_cell factor=EP300\ track encTfChipPkENCFF459ARL\ 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_tpm_rev Tc:293SlamRinderpest_06hrBr3- bigWig 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_reverse 1 1132 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14412.13546-145H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13546-145H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_06hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_ctss_rev Tc:293SlamRinderpest_06hrBr3- bigWig 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_reverse 0 1132 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14412.13546-145H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13546-145H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_06hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF108BSU neuralCell EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in neural_cell from ENCODE 3 (ENCFF108BSU) 0 1133 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in neural_cell from ENCODE 3 (ENCFF108BSU)\ parent encTfChipPk off\ shortLabel neuralCell EZH2\ subGroups cellType=neural_cell factor=EZH2\ track encTfChipPkENCFF108BSU\ 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_tpm_fwd Tc:293SlamRinderpest_12hrBr1+ bigWig 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_forward 1 1133 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14413.13547-145I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13547-145I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_12hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_ctss_fwd Tc:293SlamRinderpest_12hrBr1+ bigWig 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_forward 0 1133 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14413.13547-145I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13547-145I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_12hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF255WJM neuralCell MXI1 narrowPeak Transcription Factor ChIP-seq Peaks of MXI1 in neural_cell from ENCODE 3 (ENCFF255WJM) 0 1134 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MXI1 in neural_cell from ENCODE 3 (ENCFF255WJM)\ parent encTfChipPk off\ shortLabel neuralCell MXI1\ subGroups cellType=neural_cell factor=MXI1\ track encTfChipPkENCFF255WJM\ 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_tpm_rev Tc:293SlamRinderpest_12hrBr1- bigWig 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_reverse 1 1134 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14413.13547-145I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13547-145I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_12hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_ctss_rev Tc:293SlamRinderpest_12hrBr1- bigWig 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_reverse 0 1134 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14413.13547-145I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13547-145I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_12hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF454TRL neuralCell RAD21 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in neural_cell from ENCODE 3 (ENCFF454TRL) 0 1135 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD21 in neural_cell from ENCODE 3 (ENCFF454TRL)\ parent encTfChipPk off\ shortLabel neuralCell RAD21\ subGroups cellType=neural_cell factor=RAD21\ track encTfChipPkENCFF454TRL\ 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_tpm_fwd Tc:293SlamRinderpest_12hrBr2+ bigWig 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_forward 1 1135 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14414.13548-145I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13548-145I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_12hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_ctss_fwd Tc:293SlamRinderpest_12hrBr2+ bigWig 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_forward 0 1135 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14414.13548-145I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13548-145I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_12hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF944KJO neuralCell SMC3 narrowPeak Transcription Factor ChIP-seq Peaks of SMC3 in neural_cell from ENCODE 3 (ENCFF944KJO) 0 1136 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SMC3 in neural_cell from ENCODE 3 (ENCFF944KJO)\ parent encTfChipPk off\ shortLabel neuralCell SMC3\ subGroups cellType=neural_cell factor=SMC3\ track encTfChipPkENCFF944KJO\ 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_tpm_rev Tc:293SlamRinderpest_12hrBr2- bigWig 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_reverse 1 1136 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14414.13548-145I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13548-145I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_12hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_ctss_rev Tc:293SlamRinderpest_12hrBr2- bigWig 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_reverse 0 1136 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14414.13548-145I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13548-145I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_12hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF560GGY neurlProgntr CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in neural_progenitor_cell from ENCODE 3 (ENCFF560GGY) 0 1137 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in neural_progenitor_cell from ENCODE 3 (ENCFF560GGY)\ parent encTfChipPk off\ shortLabel neurlProgntr CTCF\ subGroups cellType=neural_progenitor_cell factor=CTCF\ track encTfChipPkENCFF560GGY\ 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_tpm_fwd Tc:293SlamRinderpest_12hrBr3+ bigWig 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_forward 1 1137 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14415.13549-145I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13549-145I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_12hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_ctss_fwd Tc:293SlamRinderpest_12hrBr3+ bigWig 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_forward 0 1137 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14415.13549-145I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13549-145I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_12hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF295HQJ neurlProgntr EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in neural_progenitor_cell from ENCODE 3 (ENCFF295HQJ) 0 1138 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in neural_progenitor_cell from ENCODE 3 (ENCFF295HQJ)\ parent encTfChipPk off\ shortLabel neurlProgntr EZH2\ subGroups cellType=neural_progenitor_cell factor=EZH2\ track encTfChipPkENCFF295HQJ\ 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_tpm_rev Tc:293SlamRinderpest_12hrBr3- bigWig 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_reverse 1 1138 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14415.13549-145I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13549-145I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_12hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_ctss_rev Tc:293SlamRinderpest_12hrBr3- bigWig 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_reverse 0 1138 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14415.13549-145I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13549-145I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_12hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF122IMV neutrophil CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in neutrophil from ENCODE 3 (ENCFF122IMV) 0 1139 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in neutrophil from ENCODE 3 (ENCFF122IMV)\ parent encTfChipPk off\ shortLabel neutrophil CTCF\ subGroups cellType=neutrophil factor=CTCF\ track encTfChipPkENCFF122IMV\ 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_tpm_fwd Tc:293SlamRinderpest_24hrBr1+ bigWig 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_forward 1 1139 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14416.13550-145I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13550-145I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_24hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_ctss_fwd Tc:293SlamRinderpest_24hrBr1+ bigWig 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_forward 0 1139 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14416.13550-145I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13550-145I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_24hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF668UDC omentalFat CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in omental_fat_pad from ENCODE 3 (ENCFF668UDC) 0 1140 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in omental_fat_pad from ENCODE 3 (ENCFF668UDC)\ parent encTfChipPk off\ shortLabel omentalFat CTCF 1\ subGroups cellType=omental_fat_pad factor=CTCF\ track encTfChipPkENCFF668UDC\ 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_tpm_rev Tc:293SlamRinderpest_24hrBr1- bigWig 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_reverse 1 1140 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14416.13550-145I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13550-145I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_24hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_ctss_rev Tc:293SlamRinderpest_24hrBr1- bigWig 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_reverse 0 1140 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14416.13550-145I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13550-145I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_24hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF399NTP omentalFat CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in omental_fat_pad from ENCODE 3 (ENCFF399NTP) 0 1141 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in omental_fat_pad from ENCODE 3 (ENCFF399NTP)\ parent encTfChipPk off\ shortLabel omentalFat CTCF 2\ subGroups cellType=omental_fat_pad factor=CTCF\ track encTfChipPkENCFF399NTP\ 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_tpm_fwd Tc:293SlamRinderpest_24hrBr2+ bigWig 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_forward 1 1141 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14417.13551-145I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13551-145I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_24hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_ctss_fwd Tc:293SlamRinderpest_24hrBr2+ bigWig 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_forward 0 1141 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14417.13551-145I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13551-145I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_24hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF157OEN omentalFat CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in omental_fat_pad from ENCODE 3 (ENCFF157OEN) 0 1142 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in omental_fat_pad from ENCODE 3 (ENCFF157OEN)\ parent encTfChipPk off\ shortLabel omentalFat CTCF 3\ subGroups cellType=omental_fat_pad factor=CTCF\ track encTfChipPkENCFF157OEN\ 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_tpm_rev Tc:293SlamRinderpest_24hrBr2- bigWig 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_reverse 1 1142 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14417.13551-145I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13551-145I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_24hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_ctss_rev Tc:293SlamRinderpest_24hrBr2- bigWig 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_reverse 0 1142 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14417.13551-145I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13551-145I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_24hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF199FCD omntalFat EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF199FCD) 0 1143 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF199FCD)\ parent encTfChipPk off\ shortLabel omntalFat EP300 1\ subGroups cellType=omental_fat_pad factor=EP300\ track encTfChipPkENCFF199FCD\ 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_tpm_fwd Tc:293SlamRinderpest_24hrBr3+ bigWig 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_forward 1 1143 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14418.13552-145I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13552-145I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_24hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_ctss_fwd Tc:293SlamRinderpest_24hrBr3+ bigWig 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_forward 0 1143 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14418.13552-145I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13552-145I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_24hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF895RTD omntalFat EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF895RTD) 0 1144 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF895RTD)\ parent encTfChipPk off\ shortLabel omntalFat EP300 2\ subGroups cellType=omental_fat_pad factor=EP300\ track encTfChipPkENCFF895RTD\ 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_tpm_rev Tc:293SlamRinderpest_24hrBr3- bigWig 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_reverse 1 1144 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14418.13552-145I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13552-145I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_24hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_ctss_rev Tc:293SlamRinderpest_24hrBr3- bigWig 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_reverse 0 1144 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14418.13552-145I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13552-145I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_24hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF102IIP omntalFat EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF102IIP) 0 1145 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF102IIP)\ parent encTfChipPk off\ shortLabel omntalFat EP300 3\ subGroups cellType=omental_fat_pad factor=EP300\ track encTfChipPkENCFF102IIP\ COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_tpm_fwd Tc:COBL-aRinderpest(-C)_06hrBr1+ bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_forward 1 1145 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep1.CNhs14435.13568-146B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13568-146B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_ctss_fwd Tc:COBL-aRinderpest(-C)_06hrBr1+ bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_forward 0 1145 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep1.CNhs14435.13568-146B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13568-146B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF454DZP omntalFat EP300 4 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF454DZP) 0 1146 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF454DZP)\ parent encTfChipPk off\ shortLabel omntalFat EP300 4\ subGroups cellType=omental_fat_pad factor=EP300\ track encTfChipPkENCFF454DZP\ COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_tpm_rev Tc:COBL-aRinderpest(-C)_06hrBr1- bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_reverse 1 1146 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep1.CNhs14435.13568-146B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13568-146B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_ctss_rev Tc:COBL-aRinderpest(-C)_06hrBr1- bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_reverse 0 1146 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep1.CNhs14435.13568-146B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13568-146B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF006YGI ovary CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in ovary from ENCODE 3 (ENCFF006YGI) 0 1147 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in ovary from ENCODE 3 (ENCFF006YGI)\ parent encTfChipPk off\ shortLabel ovary CTCF 1\ subGroups cellType=ovary factor=CTCF\ track encTfChipPkENCFF006YGI\ COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_tpm_fwd Tc:COBL-aRinderpest(-C)_06hrBr2+ bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_forward 1 1147 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep2.CNhs14436.13569-146B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13569-146B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_ctss_fwd Tc:COBL-aRinderpest(-C)_06hrBr2+ bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_forward 0 1147 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep2.CNhs14436.13569-146B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13569-146B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF886WWT ovary CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in ovary from ENCODE 3 (ENCFF886WWT) 0 1148 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in ovary from ENCODE 3 (ENCFF886WWT)\ parent encTfChipPk off\ shortLabel ovary CTCF 2\ subGroups cellType=ovary factor=CTCF\ track encTfChipPkENCFF886WWT\ COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_tpm_rev Tc:COBL-aRinderpest(-C)_06hrBr2- bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_reverse 1 1148 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep2.CNhs14436.13569-146B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13569-146B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_ctss_rev Tc:COBL-aRinderpest(-C)_06hrBr2- bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_reverse 0 1148 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep2.CNhs14436.13569-146B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13569-146B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF970XBE ovary EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in ovary from ENCODE 3 (ENCFF970XBE) 0 1149 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in ovary from ENCODE 3 (ENCFF970XBE)\ parent encTfChipPk off\ shortLabel ovary EP300 1\ subGroups cellType=ovary factor=EP300\ track encTfChipPkENCFF970XBE\ COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_tpm_fwd Tc:COBL-aRinderpest(-C)_06hrBr3+ bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_forward 1 1149 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep3.CNhs14437.13570-146B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13570-146B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_ctss_fwd Tc:COBL-aRinderpest(-C)_06hrBr3+ bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_forward 0 1149 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep3.CNhs14437.13570-146B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13570-146B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF353CLB ovary EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in ovary from ENCODE 3 (ENCFF353CLB) 0 1150 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in ovary from ENCODE 3 (ENCFF353CLB)\ parent encTfChipPk off\ shortLabel ovary EP300 2\ subGroups cellType=ovary factor=EP300\ track encTfChipPkENCFF353CLB\ COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_tpm_rev Tc:COBL-aRinderpest(-C)_06hrBr3- bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_reverse 1 1150 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep3.CNhs14437.13570-146B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13570-146B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_ctss_rev Tc:COBL-aRinderpest(-C)_06hrBr3- bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_reverse 0 1150 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep3.CNhs14437.13570-146B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13570-146B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF016APK ovary POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in ovary from ENCODE 3 (ENCFF016APK) 0 1151 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in ovary from ENCODE 3 (ENCFF016APK)\ parent encTfChipPk off\ shortLabel ovary POLR2A\ subGroups cellType=ovary factor=POLR2A\ track encTfChipPkENCFF016APK\ COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_tpm_fwd Tc:COBL-aRinderpest(-C)_12hrBr1+ bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_forward 1 1151 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep1.CNhs14438.13571-146B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13571-146B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_ctss_fwd Tc:COBL-aRinderpest(-C)_12hrBr1+ bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_forward 0 1151 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep1.CNhs14438.13571-146B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13571-146B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF142JXX prostate CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in prostate_gland from ENCODE 3 (ENCFF142JXX) 0 1152 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in prostate_gland from ENCODE 3 (ENCFF142JXX)\ parent encTfChipPk off\ shortLabel prostate CTCF 1\ subGroups cellType=prostate_gland factor=CTCF\ track encTfChipPkENCFF142JXX\ COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_tpm_rev Tc:COBL-aRinderpest(-C)_12hrBr1- bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_reverse 1 1152 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep1.CNhs14438.13571-146B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13571-146B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_ctss_rev Tc:COBL-aRinderpest(-C)_12hrBr1- bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_reverse 0 1152 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep1.CNhs14438.13571-146B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13571-146B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF341UHT prostate CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in prostate_gland from ENCODE 3 (ENCFF341UHT) 0 1153 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in prostate_gland from ENCODE 3 (ENCFF341UHT)\ parent encTfChipPk off\ shortLabel prostate CTCF 2\ subGroups cellType=prostate_gland factor=CTCF\ track encTfChipPkENCFF341UHT\ COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_tpm_fwd Tc:COBL-aRinderpest(-C)_12hrBr2+ bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_forward 1 1153 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep2.CNhs14439.13572-146B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13572-146B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_ctss_fwd Tc:COBL-aRinderpest(-C)_12hrBr2+ bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_forward 0 1153 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep2.CNhs14439.13572-146B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13572-146B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF160SYU prostate POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in prostate_gland from ENCODE 3 (ENCFF160SYU) 0 1154 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in prostate_gland from ENCODE 3 (ENCFF160SYU)\ parent encTfChipPk off\ shortLabel prostate POLR2A 1\ subGroups cellType=prostate_gland factor=POLR2A\ track encTfChipPkENCFF160SYU\ COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_tpm_rev Tc:COBL-aRinderpest(-C)_12hrBr2- bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_reverse 1 1154 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep2.CNhs14439.13572-146B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13572-146B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_ctss_rev Tc:COBL-aRinderpest(-C)_12hrBr2- bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_reverse 0 1154 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep2.CNhs14439.13572-146B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13572-146B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF674MDG prostate POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in prostate_gland from ENCODE 3 (ENCFF674MDG) 0 1155 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in prostate_gland from ENCODE 3 (ENCFF674MDG)\ parent encTfChipPk off\ shortLabel prostate POLR2A 2\ subGroups cellType=prostate_gland factor=POLR2A\ track encTfChipPkENCFF674MDG\ COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_tpm_fwd Tc:COBL-aRinderpest(-C)_12hrBr3+ bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_forward 1 1155 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep3.CNhs14440.13573-146B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13573-146B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_ctss_fwd Tc:COBL-aRinderpest(-C)_12hrBr3+ bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_forward 0 1155 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep3.CNhs14440.13573-146B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13573-146B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF409DTL retinPgmtEpi CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in retinal_pigment_epithelial_cell from ENCODE 3 (ENCFF409DTL) 0 1156 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in retinal_pigment_epithelial_cell from ENCODE 3 (ENCFF409DTL)\ parent encTfChipPk off\ shortLabel retinPgmtEpi CTCF\ subGroups cellType=retinal_pigment_epithelial_cell factor=CTCF\ track encTfChipPkENCFF409DTL\ COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_tpm_rev Tc:COBL-aRinderpest(-C)_12hrBr3- bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_reverse 1 1156 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep3.CNhs14440.13573-146B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13573-146B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_ctss_rev Tc:COBL-aRinderpest(-C)_12hrBr3- bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_reverse 0 1156 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep3.CNhs14440.13573-146B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13573-146B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF136LAP liverRLobe CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in right_lobe_of_liver from ENCODE 3 (ENCFF136LAP) 0 1157 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in right_lobe_of_liver from ENCODE 3 (ENCFF136LAP)\ parent encTfChipPk off\ shortLabel liverRLobe CTCF 2\ subGroups cellType=right_lobe_of_liver factor=CTCF\ track encTfChipPkENCFF136LAP\ COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_tpm_fwd Tc:COBL-aRinderpest(-C)_24hrBr1+ bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_forward 1 1157 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep1.CNhs14441.13574-146C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13574-146C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_ctss_fwd Tc:COBL-aRinderpest(-C)_24hrBr1+ bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_forward 0 1157 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep1.CNhs14441.13574-146C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13574-146C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF113NNM liverRLobe CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in right_lobe_of_liver from ENCODE 3 (ENCFF113NNM) 0 1158 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in right_lobe_of_liver from ENCODE 3 (ENCFF113NNM)\ parent encTfChipPk off\ shortLabel liverRLobe CTCF 1\ subGroups cellType=right_lobe_of_liver factor=POLR2A\ track encTfChipPkENCFF113NNM\ COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_tpm_rev Tc:COBL-aRinderpest(-C)_24hrBr1- bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_reverse 1 1158 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep1.CNhs14441.13574-146C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13574-146C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_ctss_rev Tc:COBL-aRinderpest(-C)_24hrBr1- bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_reverse 0 1158 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep1.CNhs14441.13574-146C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13574-146C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF070ILT sigmdColon CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF070ILT) 0 1159 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF070ILT)\ parent encTfChipPk off\ shortLabel sigmdColon CTCF 1\ subGroups cellType=sigmoid_colon factor=CTCF\ track encTfChipPkENCFF070ILT\ COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_tpm_fwd Tc:COBL-aRinderpest(-C)_24hrBr2+ bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_forward 1 1159 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep2.CNhs14442.13575-146C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13575-146C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_ctss_fwd Tc:COBL-aRinderpest(-C)_24hrBr2+ bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_forward 0 1159 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep2.CNhs14442.13575-146C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13575-146C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF668SIT sigmdColon CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF668SIT) 0 1160 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF668SIT)\ parent encTfChipPk off\ shortLabel sigmdColon CTCF 2\ subGroups cellType=sigmoid_colon factor=CTCF\ track encTfChipPkENCFF668SIT\ COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_tpm_rev Tc:COBL-aRinderpest(-C)_24hrBr2- bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_reverse 1 1160 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep2.CNhs14442.13575-146C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13575-146C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_ctss_rev Tc:COBL-aRinderpest(-C)_24hrBr2- bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_reverse 0 1160 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep2.CNhs14442.13575-146C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13575-146C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF782FTD sigmdColon CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF782FTD) 0 1161 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF782FTD)\ parent encTfChipPk off\ shortLabel sigmdColon CTCF 3\ subGroups cellType=sigmoid_colon factor=CTCF\ track encTfChipPkENCFF782FTD\ COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_tpm_fwd Tc:COBL-aRinderpest(-C)_24hrBr3+ bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_forward 1 1161 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep3.CNhs14443.13576-146C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13576-146C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_ctss_fwd Tc:COBL-aRinderpest(-C)_24hrBr3+ bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_forward 0 1161 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep3.CNhs14443.13576-146C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13576-146C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF615AFS sigmdColon CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF615AFS) 0 1162 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF615AFS)\ parent encTfChipPk off\ shortLabel sigmdColon CTCF 4\ subGroups cellType=sigmoid_colon factor=CTCF\ track encTfChipPkENCFF615AFS\ COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_tpm_rev Tc:COBL-aRinderpest(-C)_24hrBr3- bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_reverse 1 1162 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep3.CNhs14443.13576-146C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13576-146C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_ctss_rev Tc:COBL-aRinderpest(-C)_24hrBr3- bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_reverse 0 1162 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep3.CNhs14443.13576-146C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13576-146C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF616YFR sigmdCln EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF616YFR) 0 1163 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF616YFR)\ parent encTfChipPk off\ shortLabel sigmdCln EP300 1\ subGroups cellType=sigmoid_colon factor=EP300\ track encTfChipPkENCFF616YFR\ COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_tpm_fwd Tc:COBL-aRinderpest(-C)_48hrBr1+ bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_forward 1 1163 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep1.CNhs14444.13577-146C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13577-146C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_ctss_fwd Tc:COBL-aRinderpest(-C)_48hrBr1+ bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_forward 0 1163 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep1.CNhs14444.13577-146C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13577-146C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF231LOU sigmdCln EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF231LOU) 0 1164 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF231LOU)\ parent encTfChipPk off\ shortLabel sigmdCln EP300 2\ subGroups cellType=sigmoid_colon factor=EP300\ track encTfChipPkENCFF231LOU\ COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_tpm_rev Tc:COBL-aRinderpest(-C)_48hrBr1- bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_reverse 1 1164 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep1.CNhs14444.13577-146C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13577-146C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_ctss_rev Tc:COBL-aRinderpest(-C)_48hrBr1- bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_reverse 0 1164 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep1.CNhs14444.13577-146C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13577-146C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF169FFA sigmdCln EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF169FFA) 0 1165 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF169FFA)\ parent encTfChipPk off\ shortLabel sigmdCln EP300 3\ subGroups cellType=sigmoid_colon factor=EP300\ track encTfChipPkENCFF169FFA\ COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_tpm_fwd Tc:COBL-aRinderpest(-C)_48hrBr2+ bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_forward 1 1165 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep2.CNhs14445.13578-146C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13578-146C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_ctss_fwd Tc:COBL-aRinderpest(-C)_48hrBr2+ bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_forward 0 1165 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep2.CNhs14445.13578-146C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13578-146C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF091KSY sigmdCln EP300 4 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF091KSY) 0 1166 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF091KSY)\ parent encTfChipPk off\ shortLabel sigmdCln EP300 4\ subGroups cellType=sigmoid_colon factor=EP300\ track encTfChipPkENCFF091KSY\ COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_tpm_rev Tc:COBL-aRinderpest(-C)_48hrBr2- bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_reverse 1 1166 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep2.CNhs14445.13578-146C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13578-146C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_ctss_rev Tc:COBL-aRinderpest(-C)_48hrBr2- bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_reverse 0 1166 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep2.CNhs14445.13578-146C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13578-146C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF328BTO sigmdCln POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF328BTO) 0 1167 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF328BTO)\ parent encTfChipPk off\ shortLabel sigmdCln POLR2A 1\ subGroups cellType=sigmoid_colon factor=POLR2A\ track encTfChipPkENCFF328BTO\ COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_tpm_fwd Tc:COBL-aRinderpest(-C)_48hrBr3+ bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_forward 1 1167 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep3.CNhs14446.13579-146C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13579-146C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_ctss_fwd Tc:COBL-aRinderpest(-C)_48hrBr3+ bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_forward 0 1167 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep3.CNhs14446.13579-146C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13579-146C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF182ETN sigmdCln POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF182ETN) 0 1168 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF182ETN)\ parent encTfChipPk off\ shortLabel sigmdCln POLR2A 2\ subGroups cellType=sigmoid_colon factor=POLR2A\ track encTfChipPkENCFF182ETN\ COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_tpm_rev Tc:COBL-aRinderpest(-C)_48hrBr3- bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_reverse 1 1168 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep3.CNhs14446.13579-146C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13579-146C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_ctss_rev Tc:COBL-aRinderpest(-C)_48hrBr3- bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_reverse 0 1168 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep3.CNhs14446.13579-146C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13579-146C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF680JEG sigmdCln POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF680JEG) 0 1169 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF680JEG)\ parent encTfChipPk off\ shortLabel sigmdCln POLR2A 3\ subGroups cellType=sigmoid_colon factor=POLR2A\ track encTfChipPkENCFF680JEG\ COBLaRinderpestInfection00hrBiolRep1_CNhs14419_tpm_fwd Tc:COBL-aRinderpest_00hrBr1+ bigWig COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_forward 1 1169 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14419.13553-145I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13553-145I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_00hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection00hrBiolRep1_CNhs14419_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection00hrBiolRep1_CNhs14419_ctss_fwd Tc:COBL-aRinderpest_00hrBr1+ bigWig COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_forward 0 1169 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14419.13553-145I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13553-145I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_00hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection00hrBiolRep1_CNhs14419_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF191BTJ sigmdCln POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF191BTJ) 0 1170 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF191BTJ)\ parent encTfChipPk off\ shortLabel sigmdCln POLR2A 4\ subGroups cellType=sigmoid_colon factor=POLR2A\ track encTfChipPkENCFF191BTJ\ COBLaRinderpestInfection00hrBiolRep1_CNhs14419_tpm_rev Tc:COBL-aRinderpest_00hrBr1- bigWig COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_reverse 1 1170 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14419.13553-145I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13553-145I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_00hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection00hrBiolRep1_CNhs14419_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection00hrBiolRep1_CNhs14419_ctss_rev Tc:COBL-aRinderpest_00hrBr1- bigWig COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_reverse 0 1170 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14419.13553-145I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13553-145I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_00hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection00hrBiolRep1_CNhs14419_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF928ZSB sigmdCln POLR2A 5 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF928ZSB) 0 1171 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF928ZSB)\ parent encTfChipPk off\ shortLabel sigmdCln POLR2A 5\ subGroups cellType=sigmoid_colon factor=POLR2A\ track encTfChipPkENCFF928ZSB\ COBLaRinderpestInfection00hrBiolRep2_CNhs14420_tpm_fwd Tc:COBL-aRinderpest_00hrBr2+ bigWig COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_forward 1 1171 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14420.13554-145I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13554-145I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_00hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection00hrBiolRep2_CNhs14420_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection00hrBiolRep2_CNhs14420_ctss_fwd Tc:COBL-aRinderpest_00hrBr2+ bigWig COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_forward 0 1171 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14420.13554-145I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13554-145I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_00hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection00hrBiolRep2_CNhs14420_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF141MTA smoothMuscle CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in smooth_muscle_cell from ENCODE 3 (ENCFF141MTA) 0 1172 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in smooth_muscle_cell from ENCODE 3 (ENCFF141MTA)\ parent encTfChipPk off\ shortLabel smoothMuscle CTCF\ subGroups cellType=smooth_muscle_cell factor=CTCF\ track encTfChipPkENCFF141MTA\ COBLaRinderpestInfection00hrBiolRep2_CNhs14420_tpm_rev Tc:COBL-aRinderpest_00hrBr2- bigWig COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_reverse 1 1172 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14420.13554-145I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13554-145I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_00hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection00hrBiolRep2_CNhs14420_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection00hrBiolRep2_CNhs14420_ctss_rev Tc:COBL-aRinderpest_00hrBr2- bigWig COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_reverse 0 1172 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14420.13554-145I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13554-145I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_00hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection00hrBiolRep2_CNhs14420_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF540DVR spleen CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF540DVR) 0 1173 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF540DVR)\ parent encTfChipPk off\ shortLabel spleen CTCF 1\ subGroups cellType=spleen factor=CTCF\ track encTfChipPkENCFF540DVR\ COBLaRinderpestInfection00hrBiolRep3_CNhs14421_tpm_fwd Tc:COBL-aRinderpest_00hrBr3+ bigWig COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_forward 1 1173 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14421.13555-145I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13555-145I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_00hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection00hrBiolRep3_CNhs14421_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection00hrBiolRep3_CNhs14421_ctss_fwd Tc:COBL-aRinderpest_00hrBr3+ bigWig COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_forward 0 1173 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14421.13555-145I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13555-145I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_00hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection00hrBiolRep3_CNhs14421_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF234VTM spleen CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF234VTM) 0 1174 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF234VTM)\ parent encTfChipPk off\ shortLabel spleen CTCF 2\ subGroups cellType=spleen factor=CTCF\ track encTfChipPkENCFF234VTM\ COBLaRinderpestInfection00hrBiolRep3_CNhs14421_tpm_rev Tc:COBL-aRinderpest_00hrBr3- bigWig COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_reverse 1 1174 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14421.13555-145I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13555-145I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_00hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection00hrBiolRep3_CNhs14421_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection00hrBiolRep3_CNhs14421_ctss_rev Tc:COBL-aRinderpest_00hrBr3- bigWig COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_reverse 0 1174 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14421.13555-145I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13555-145I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_00hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection00hrBiolRep3_CNhs14421_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF248QUD spleen CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF248QUD) 0 1175 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF248QUD)\ parent encTfChipPk off\ shortLabel spleen CTCF 3\ subGroups cellType=spleen factor=CTCF\ track encTfChipPkENCFF248QUD\ COBLaRinderpestInfection06hrBiolRep1_CNhs14422_tpm_fwd Tc:COBL-aRinderpest_06hrBr1+ bigWig COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_forward 1 1175 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14422.13556-146A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13556-146A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_06hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection06hrBiolRep1_CNhs14422_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection06hrBiolRep1_CNhs14422_ctss_fwd Tc:COBL-aRinderpest_06hrBr1+ bigWig COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_forward 0 1175 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14422.13556-146A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13556-146A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_06hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection06hrBiolRep1_CNhs14422_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF340BQM spleen CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF340BQM) 0 1176 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF340BQM)\ parent encTfChipPk off\ shortLabel spleen CTCF 4\ subGroups cellType=spleen factor=CTCF\ track encTfChipPkENCFF340BQM\ COBLaRinderpestInfection06hrBiolRep1_CNhs14422_tpm_rev Tc:COBL-aRinderpest_06hrBr1- bigWig COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_reverse 1 1176 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14422.13556-146A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13556-146A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_06hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection06hrBiolRep1_CNhs14422_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection06hrBiolRep1_CNhs14422_ctss_rev Tc:COBL-aRinderpest_06hrBr1- bigWig COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_reverse 0 1176 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14422.13556-146A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13556-146A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_06hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection06hrBiolRep1_CNhs14422_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF068YLN spleen CTCF 5 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF068YLN) 0 1177 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF068YLN)\ parent encTfChipPk off\ shortLabel spleen CTCF 5\ subGroups cellType=spleen factor=CTCF\ track encTfChipPkENCFF068YLN\ COBLaRinderpestInfection06hrBiolRep2_CNhs14423_tpm_fwd Tc:COBL-aRinderpest_06hrBr2+ bigWig COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_forward 1 1177 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14423.13557-146A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13557-146A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_06hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection06hrBiolRep2_CNhs14423_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection06hrBiolRep2_CNhs14423_ctss_fwd Tc:COBL-aRinderpest_06hrBr2+ bigWig COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_forward 0 1177 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14423.13557-146A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13557-146A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_06hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection06hrBiolRep2_CNhs14423_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF290BOD spleen POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF290BOD) 0 1178 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF290BOD)\ parent encTfChipPk off\ shortLabel spleen POLR2A 1\ subGroups cellType=spleen factor=POLR2A\ track encTfChipPkENCFF290BOD\ COBLaRinderpestInfection06hrBiolRep2_CNhs14423_tpm_rev Tc:COBL-aRinderpest_06hrBr2- bigWig COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_reverse 1 1178 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14423.13557-146A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13557-146A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_06hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection06hrBiolRep2_CNhs14423_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection06hrBiolRep2_CNhs14423_ctss_rev Tc:COBL-aRinderpest_06hrBr2- bigWig COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_reverse 0 1178 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14423.13557-146A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13557-146A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_06hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection06hrBiolRep2_CNhs14423_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF128AIK spleen POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF128AIK) 0 1179 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF128AIK)\ parent encTfChipPk off\ shortLabel spleen POLR2A 2\ subGroups cellType=spleen factor=POLR2A\ track encTfChipPkENCFF128AIK\ COBLaRinderpestInfection06hrBiolRep3_CNhs14424_tpm_fwd Tc:COBL-aRinderpest_06hrBr3+ bigWig COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_forward 1 1179 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14424.13558-146A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13558-146A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_06hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection06hrBiolRep3_CNhs14424_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection06hrBiolRep3_CNhs14424_ctss_fwd Tc:COBL-aRinderpest_06hrBr3+ bigWig COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_forward 0 1179 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14424.13558-146A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13558-146A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_06hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection06hrBiolRep3_CNhs14424_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF323FPP spleen POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF323FPP) 0 1180 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF323FPP)\ parent encTfChipPk off\ shortLabel spleen POLR2A 3\ subGroups cellType=spleen factor=POLR2A\ track encTfChipPkENCFF323FPP\ COBLaRinderpestInfection06hrBiolRep3_CNhs14424_tpm_rev Tc:COBL-aRinderpest_06hrBr3- bigWig COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_reverse 1 1180 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14424.13558-146A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13558-146A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_06hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection06hrBiolRep3_CNhs14424_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection06hrBiolRep3_CNhs14424_ctss_rev Tc:COBL-aRinderpest_06hrBr3- bigWig COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_reverse 0 1180 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14424.13558-146A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13558-146A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_06hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection06hrBiolRep3_CNhs14424_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF379SGB spleen POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF379SGB) 0 1181 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF379SGB)\ parent encTfChipPk off\ shortLabel spleen POLR2A 4\ subGroups cellType=spleen factor=POLR2A\ track encTfChipPkENCFF379SGB\ COBLaRinderpestInfection12hrBiolRep1_CNhs14425_tpm_fwd Tc:COBL-aRinderpest_12hrBr1+ bigWig COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_forward 1 1181 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14425.13559-146A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13559-146A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_12hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection12hrBiolRep1_CNhs14425_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection12hrBiolRep1_CNhs14425_ctss_fwd Tc:COBL-aRinderpest_12hrBr1+ bigWig COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_forward 0 1181 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14425.13559-146A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13559-146A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_12hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection12hrBiolRep1_CNhs14425_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF481CNC stomach CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF481CNC) 0 1182 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF481CNC)\ parent encTfChipPk off\ shortLabel stomach CTCF 1\ subGroups cellType=stomach factor=CTCF\ track encTfChipPkENCFF481CNC\ COBLaRinderpestInfection12hrBiolRep1_CNhs14425_tpm_rev Tc:COBL-aRinderpest_12hrBr1- bigWig COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_reverse 1 1182 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14425.13559-146A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13559-146A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_12hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection12hrBiolRep1_CNhs14425_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection12hrBiolRep1_CNhs14425_ctss_rev Tc:COBL-aRinderpest_12hrBr1- bigWig COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_reverse 0 1182 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14425.13559-146A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13559-146A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_12hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection12hrBiolRep1_CNhs14425_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF825XAC stomach CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF825XAC) 0 1183 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF825XAC)\ parent encTfChipPk off\ shortLabel stomach CTCF 2\ subGroups cellType=stomach factor=CTCF\ track encTfChipPkENCFF825XAC\ COBLaRinderpestInfection12hrBiolRep2_CNhs14426_tpm_fwd Tc:COBL-aRinderpest_12hrBr2+ bigWig COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_forward 1 1183 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14426.13560-146A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13560-146A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_12hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection12hrBiolRep2_CNhs14426_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection12hrBiolRep2_CNhs14426_ctss_fwd Tc:COBL-aRinderpest_12hrBr2+ bigWig COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_forward 0 1183 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14426.13560-146A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13560-146A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_12hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection12hrBiolRep2_CNhs14426_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF220VAH stomach CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF220VAH) 0 1184 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF220VAH)\ parent encTfChipPk off\ shortLabel stomach CTCF 3\ subGroups cellType=stomach factor=CTCF\ track encTfChipPkENCFF220VAH\ COBLaRinderpestInfection12hrBiolRep2_CNhs14426_tpm_rev Tc:COBL-aRinderpest_12hrBr2- bigWig COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_reverse 1 1184 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14426.13560-146A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13560-146A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_12hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection12hrBiolRep2_CNhs14426_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection12hrBiolRep2_CNhs14426_ctss_rev Tc:COBL-aRinderpest_12hrBr2- bigWig COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_reverse 0 1184 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14426.13560-146A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13560-146A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_12hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection12hrBiolRep2_CNhs14426_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF831BFL stomach CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF831BFL) 0 1185 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF831BFL)\ parent encTfChipPk off\ shortLabel stomach CTCF 4\ subGroups cellType=stomach factor=CTCF\ track encTfChipPkENCFF831BFL\ COBLaRinderpestInfection12hrBiolRep3_CNhs14427_tpm_fwd Tc:COBL-aRinderpest_12hrBr3+ bigWig COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_forward 1 1185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14427.13561-146A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13561-146A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_12hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection12hrBiolRep3_CNhs14427_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection12hrBiolRep3_CNhs14427_ctss_fwd Tc:COBL-aRinderpest_12hrBr3+ bigWig COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_forward 0 1185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14427.13561-146A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13561-146A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_12hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection12hrBiolRep3_CNhs14427_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF856BRS stomach EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in stomach from ENCODE 3 (ENCFF856BRS) 0 1186 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in stomach from ENCODE 3 (ENCFF856BRS)\ parent encTfChipPk off\ shortLabel stomach EP300 1\ subGroups cellType=stomach factor=EP300\ track encTfChipPkENCFF856BRS\ COBLaRinderpestInfection12hrBiolRep3_CNhs14427_tpm_rev Tc:COBL-aRinderpest_12hrBr3- bigWig COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_reverse 1 1186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14427.13561-146A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13561-146A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_12hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection12hrBiolRep3_CNhs14427_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection12hrBiolRep3_CNhs14427_ctss_rev Tc:COBL-aRinderpest_12hrBr3- bigWig COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_reverse 0 1186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14427.13561-146A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13561-146A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_12hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection12hrBiolRep3_CNhs14427_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF904COM stomach EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in stomach from ENCODE 3 (ENCFF904COM) 0 1187 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in stomach from ENCODE 3 (ENCFF904COM)\ parent encTfChipPk off\ shortLabel stomach EP300 2\ subGroups cellType=stomach factor=EP300\ track encTfChipPkENCFF904COM\ COBLaRinderpestInfection24hrBiolRep1_CNhs14428_tpm_fwd Tc:COBL-aRinderpest_24hrBr1+ bigWig COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_forward 1 1187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14428.13562-146A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13562-146A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_24hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection24hrBiolRep1_CNhs14428_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection24hrBiolRep1_CNhs14428_ctss_fwd Tc:COBL-aRinderpest_24hrBr1+ bigWig COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_forward 0 1187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14428.13562-146A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13562-146A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_24hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection24hrBiolRep1_CNhs14428_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF469SGL stomach EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in stomach from ENCODE 3 (ENCFF469SGL) 0 1188 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in stomach from ENCODE 3 (ENCFF469SGL)\ parent encTfChipPk off\ shortLabel stomach EP300 3\ subGroups cellType=stomach factor=EP300\ track encTfChipPkENCFF469SGL\ COBLaRinderpestInfection24hrBiolRep1_CNhs14428_tpm_rev Tc:COBL-aRinderpest_24hrBr1- bigWig COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_reverse 1 1188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14428.13562-146A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13562-146A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_24hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection24hrBiolRep1_CNhs14428_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection24hrBiolRep1_CNhs14428_ctss_rev Tc:COBL-aRinderpest_24hrBr1- bigWig COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_reverse 0 1188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14428.13562-146A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13562-146A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_24hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection24hrBiolRep1_CNhs14428_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF827SHP stomach POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF827SHP) 0 1189 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF827SHP)\ parent encTfChipPk off\ shortLabel stomach POLR2A 1\ subGroups cellType=stomach factor=POLR2A\ track encTfChipPkENCFF827SHP\ COBLaRinderpestInfection24hrBiolRep2_CNhs14429_tpm_fwd Tc:COBL-aRinderpest_24hrBr2+ bigWig COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_forward 1 1189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14429.13563-146A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13563-146A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_24hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection24hrBiolRep2_CNhs14429_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection24hrBiolRep2_CNhs14429_ctss_fwd Tc:COBL-aRinderpest_24hrBr2+ bigWig COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_forward 0 1189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14429.13563-146A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13563-146A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_24hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection24hrBiolRep2_CNhs14429_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF880FUR stomach POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF880FUR) 0 1190 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF880FUR)\ parent encTfChipPk off\ shortLabel stomach POLR2A 2\ subGroups cellType=stomach factor=POLR2A\ track encTfChipPkENCFF880FUR\ COBLaRinderpestInfection24hrBiolRep2_CNhs14429_tpm_rev Tc:COBL-aRinderpest_24hrBr2- bigWig COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_reverse 1 1190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14429.13563-146A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13563-146A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_24hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection24hrBiolRep2_CNhs14429_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection24hrBiolRep2_CNhs14429_ctss_rev Tc:COBL-aRinderpest_24hrBr2- bigWig COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_reverse 0 1190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14429.13563-146A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13563-146A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_24hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection24hrBiolRep2_CNhs14429_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF905CUU stomach POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF905CUU) 0 1191 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF905CUU)\ parent encTfChipPk off\ shortLabel stomach POLR2A 3\ subGroups cellType=stomach factor=POLR2A\ track encTfChipPkENCFF905CUU\ COBLaRinderpestInfection24hrBiolRep3_CNhs14430_tpm_fwd Tc:COBL-aRinderpest_24hrBr3+ bigWig COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_forward 1 1191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14430.13564-146A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13564-146A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_24hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection24hrBiolRep3_CNhs14430_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection24hrBiolRep3_CNhs14430_ctss_fwd Tc:COBL-aRinderpest_24hrBr3+ bigWig COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_forward 0 1191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14430.13564-146A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13564-146A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_24hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection24hrBiolRep3_CNhs14430_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF280GHS stomach POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF280GHS) 0 1192 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF280GHS)\ parent encTfChipPk off\ shortLabel stomach POLR2A 4\ subGroups cellType=stomach factor=POLR2A\ track encTfChipPkENCFF280GHS\ COBLaRinderpestInfection24hrBiolRep3_CNhs14430_tpm_rev Tc:COBL-aRinderpest_24hrBr3- bigWig COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_reverse 1 1192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14430.13564-146A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13564-146A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_24hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection24hrBiolRep3_CNhs14430_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection24hrBiolRep3_CNhs14430_ctss_rev Tc:COBL-aRinderpest_24hrBr3- bigWig COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_reverse 0 1192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14430.13564-146A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13564-146A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_24hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection24hrBiolRep3_CNhs14430_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF719VDM subcutAdip CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF719VDM) 0 1193 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF719VDM)\ parent encTfChipPk off\ shortLabel subcutAdip CTCF 1\ subGroups cellType=subcutaneous_adipose_tissue factor=CTCF\ track encTfChipPkENCFF719VDM\ COBLaRinderpestInfection48hrBiolRep1_CNhs14431_tpm_fwd Tc:COBL-aRinderpest_48hrBr1+ bigWig COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_forward 1 1193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep1.CNhs14431.13565-146B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13565-146B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_48hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection48hrBiolRep1_CNhs14431_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection48hrBiolRep1_CNhs14431_ctss_fwd Tc:COBL-aRinderpest_48hrBr1+ bigWig COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_forward 0 1193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep1.CNhs14431.13565-146B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13565-146B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_48hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection48hrBiolRep1_CNhs14431_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF688KFE subcutAdip CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF688KFE) 0 1194 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF688KFE)\ parent encTfChipPk off\ shortLabel subcutAdip CTCF 2\ subGroups cellType=subcutaneous_adipose_tissue factor=CTCF\ track encTfChipPkENCFF688KFE\ COBLaRinderpestInfection48hrBiolRep1_CNhs14431_tpm_rev Tc:COBL-aRinderpest_48hrBr1- bigWig COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_reverse 1 1194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep1.CNhs14431.13565-146B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13565-146B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_48hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection48hrBiolRep1_CNhs14431_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection48hrBiolRep1_CNhs14431_ctss_rev Tc:COBL-aRinderpest_48hrBr1- bigWig COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_reverse 0 1194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep1.CNhs14431.13565-146B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13565-146B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_48hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection48hrBiolRep1_CNhs14431_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF042DNR subcutAdp EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF042DNR) 0 1195 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF042DNR)\ parent encTfChipPk off\ shortLabel subcutAdp EP300 1\ subGroups cellType=subcutaneous_adipose_tissue factor=EP300\ track encTfChipPkENCFF042DNR\ COBLaRinderpestInfection48hrBiolRep2_CNhs14432_tpm_fwd Tc:COBL-aRinderpest_48hrBr2+ bigWig COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_forward 1 1195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep2.CNhs14432.13566-146B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13566-146B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_48hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection48hrBiolRep2_CNhs14432_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection48hrBiolRep2_CNhs14432_ctss_fwd Tc:COBL-aRinderpest_48hrBr2+ bigWig COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_forward 0 1195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep2.CNhs14432.13566-146B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13566-146B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_48hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection48hrBiolRep2_CNhs14432_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF191VCL subcutAdp EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF191VCL) 0 1196 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF191VCL)\ parent encTfChipPk off\ shortLabel subcutAdp EP300 2\ subGroups cellType=subcutaneous_adipose_tissue factor=EP300\ track encTfChipPkENCFF191VCL\ COBLaRinderpestInfection48hrBiolRep2_CNhs14432_tpm_rev Tc:COBL-aRinderpest_48hrBr2- bigWig COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_reverse 1 1196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep2.CNhs14432.13566-146B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13566-146B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_48hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection48hrBiolRep2_CNhs14432_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection48hrBiolRep2_CNhs14432_ctss_rev Tc:COBL-aRinderpest_48hrBr2- bigWig COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_reverse 0 1196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep2.CNhs14432.13566-146B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13566-146B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_48hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection48hrBiolRep2_CNhs14432_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF434OJH subcutAdp EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF434OJH) 0 1197 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF434OJH)\ parent encTfChipPk off\ shortLabel subcutAdp EP300 3\ subGroups cellType=subcutaneous_adipose_tissue factor=EP300\ track encTfChipPkENCFF434OJH\ COBLaRinderpestInfection48hrBiolRep3_CNhs14434_tpm_fwd Tc:COBL-aRinderpest_48hrBr3+ bigWig COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_forward 1 1197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep3.CNhs14434.13567-146B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13567-146B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_48hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection48hrBiolRep3_CNhs14434_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection48hrBiolRep3_CNhs14434_ctss_fwd Tc:COBL-aRinderpest_48hrBr3+ bigWig COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_forward 0 1197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep3.CNhs14434.13567-146B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13567-146B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_48hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection48hrBiolRep3_CNhs14434_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF085MWN subcutAdp EP300 4 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF085MWN) 0 1198 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF085MWN)\ parent encTfChipPk off\ shortLabel subcutAdp EP300 4\ subGroups cellType=subcutaneous_adipose_tissue factor=EP300\ track encTfChipPkENCFF085MWN\ COBLaRinderpestInfection48hrBiolRep3_CNhs14434_tpm_rev Tc:COBL-aRinderpest_48hrBr3- bigWig COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_reverse 1 1198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep3.CNhs14434.13567-146B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13567-146B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_48hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection48hrBiolRep3_CNhs14434_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection48hrBiolRep3_CNhs14434_ctss_rev Tc:COBL-aRinderpest_48hrBr3- bigWig COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_reverse 0 1198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep3.CNhs14434.13567-146B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13567-146B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_48hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection48hrBiolRep3_CNhs14434_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr00minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_forward 1 1199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep1%20%28A1%20T0%29.CNhs11918.12662-134I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12662-134I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr00minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_forward 0 1199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep1%20%28A1%20T0%29.CNhs11918.12662-134I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12662-134I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF687WWO suprpbSkin CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in suprapubic_skin from ENCODE 3 (ENCFF687WWO) 0 1199 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in suprapubic_skin from ENCODE 3 (ENCFF687WWO)\ parent encTfChipPk off\ shortLabel suprpbSkin CTCF 1\ subGroups cellType=suprapubic_skin factor=CTCF\ track encTfChipPkENCFF687WWO\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_tpm_rev Saos-2W/AscorbicAcidBgp_00hr00minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_reverse 1 1200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep1%20%28A1%20T0%29.CNhs11918.12662-134I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12662-134I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_ctss_rev Saos-2W/AscorbicAcidBgp_00hr00minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_reverse 0 1200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep1%20%28A1%20T0%29.CNhs11918.12662-134I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12662-134I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF102XCU suprpbSkin CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in suprapubic_skin from ENCODE 3 (ENCFF102XCU) 0 1200 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in suprapubic_skin from ENCODE 3 (ENCFF102XCU)\ parent encTfChipPk off\ shortLabel suprpbSkin CTCF 2\ subGroups cellType=suprapubic_skin factor=CTCF\ track encTfChipPkENCFF102XCU\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr00minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_forward 1 1201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep2%20%28A2%20T0%29.CNhs12859.12760-136B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12760-136B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr00minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_forward 0 1201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep2%20%28A2%20T0%29.CNhs12859.12760-136B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12760-136B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF783HDF suprpbSkin EP300 4 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF783HDF) 0 1201 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF783HDF)\ parent encTfChipPk off\ shortLabel suprpbSkin EP300 4\ subGroups cellType=suprapubic_skin factor=EP300\ track encTfChipPkENCFF783HDF\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_tpm_rev Saos-2W/AscorbicAcidBgp_00hr00minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_reverse 1 1202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep2%20%28A2%20T0%29.CNhs12859.12760-136B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12760-136B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_ctss_rev Saos-2W/AscorbicAcidBgp_00hr00minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_reverse 0 1202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep2%20%28A2%20T0%29.CNhs12859.12760-136B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12760-136B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF079BIZ suprpSkin EP300 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF079BIZ) 0 1202 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF079BIZ)\ parent encTfChipPk off\ shortLabel suprpSkin EP300\ subGroups cellType=suprapubic_skin factor=EP300\ track encTfChipPkENCFF079BIZ\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr00minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_forward 1 1203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep3%20%28A3%20T0%29.CNhs12952.12858-137D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12858-137D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr00minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_forward 0 1203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep3%20%28A3%20T0%29.CNhs12952.12858-137D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12858-137D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF104UOC suprpSkin EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF104UOC) 0 1203 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF104UOC)\ parent encTfChipPk off\ shortLabel suprpSkin EP300 1\ subGroups cellType=suprapubic_skin factor=EP300\ track encTfChipPkENCFF104UOC\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_tpm_rev Saos-2W/AscorbicAcidBgp_00hr00minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_reverse 1 1204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep3%20%28A3%20T0%29.CNhs12952.12858-137D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12858-137D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_ctss_rev Saos-2W/AscorbicAcidBgp_00hr00minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_reverse 0 1204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep3%20%28A3%20T0%29.CNhs12952.12858-137D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12858-137D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF266KJH suprpSkin EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF266KJH) 0 1204 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF266KJH)\ parent encTfChipPk off\ shortLabel suprpSkin EP300 2\ subGroups cellType=suprapubic_skin factor=EP300\ track encTfChipPkENCFF266KJH\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr15minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_forward 1 1205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep1%20%28A1%20T1%29.CNhs12381.12663-134I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12663-134I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr15minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_forward 0 1205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep1%20%28A1%20T1%29.CNhs12381.12663-134I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12663-134I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF401DJJ sprpSkin POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in suprapubic_skin from ENCODE 3 (ENCFF401DJJ) 0 1205 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in suprapubic_skin from ENCODE 3 (ENCFF401DJJ)\ parent encTfChipPk off\ shortLabel sprpSkin POLR2A 1\ subGroups cellType=suprapubic_skin factor=POLR2A\ track encTfChipPkENCFF401DJJ\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_tpm_rev Saos-2W/AscorbicAcidBgp_00hr15minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_reverse 1 1206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep1%20%28A1%20T1%29.CNhs12381.12663-134I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12663-134I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_ctss_rev Saos-2W/AscorbicAcidBgp_00hr15minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_reverse 0 1206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep1%20%28A1%20T1%29.CNhs12381.12663-134I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12663-134I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF480OTT sprpSkin POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in suprapubic_skin from ENCODE 3 (ENCFF480OTT) 0 1206 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in suprapubic_skin from ENCODE 3 (ENCFF480OTT)\ parent encTfChipPk off\ shortLabel sprpSkin POLR2A 2\ subGroups cellType=suprapubic_skin factor=POLR2A\ track encTfChipPkENCFF480OTT\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr15minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_forward 1 1207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep2%20%28A2%20T1%29.CNhs12860.12761-136B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12761-136B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr15minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_forward 0 1207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep2%20%28A2%20T1%29.CNhs12860.12761-136B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12761-136B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF788RFY testis CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in testis from ENCODE 3 (ENCFF788RFY) 0 1207 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in testis from ENCODE 3 (ENCFF788RFY)\ parent encTfChipPk off\ shortLabel testis CTCF 1\ subGroups cellType=testis factor=CTCF\ track encTfChipPkENCFF788RFY\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_tpm_rev Saos-2W/AscorbicAcidBgp_00hr15minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_reverse 1 1208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep2%20%28A2%20T1%29.CNhs12860.12761-136B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12761-136B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_ctss_rev Saos-2W/AscorbicAcidBgp_00hr15minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_reverse 0 1208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep2%20%28A2%20T1%29.CNhs12860.12761-136B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12761-136B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF644JKD testis CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in testis from ENCODE 3 (ENCFF644JKD) 0 1208 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in testis from ENCODE 3 (ENCFF644JKD)\ parent encTfChipPk off\ shortLabel testis CTCF 2\ subGroups cellType=testis factor=CTCF\ track encTfChipPkENCFF644JKD\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr15minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_forward 1 1209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep3%20%28A3%20T1%29.CNhs12877.12859-137D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12859-137D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr15minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_forward 0 1209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep3%20%28A3%20T1%29.CNhs12877.12859-137D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12859-137D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF046VTZ testis EP300 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in testis from ENCODE 3 (ENCFF046VTZ) 0 1209 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in testis from ENCODE 3 (ENCFF046VTZ)\ parent encTfChipPk off\ shortLabel testis EP300\ subGroups cellType=testis factor=EP300\ track encTfChipPkENCFF046VTZ\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_tpm_rev Saos-2W/AscorbicAcidBgp_00hr15minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_reverse 1 1210 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep3%20%28A3%20T1%29.CNhs12877.12859-137D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12859-137D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_ctss_rev Saos-2W/AscorbicAcidBgp_00hr15minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_reverse 0 1210 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep3%20%28A3%20T1%29.CNhs12877.12859-137D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12859-137D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF535DHF testis POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in testis from ENCODE 3 (ENCFF535DHF) 0 1210 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in testis from ENCODE 3 (ENCFF535DHF)\ parent encTfChipPk off\ shortLabel testis POLR2A\ subGroups cellType=testis factor=POLR2A\ track encTfChipPkENCFF535DHF\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr30minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_forward 1 1211 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep1%20%28A1%20T2%29.CNhs12382.12664-134I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12664-134I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr30minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_forward 0 1211 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep1%20%28A1%20T2%29.CNhs12382.12664-134I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12664-134I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF728IYI thyroid CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in thyroid_gland from ENCODE 3 (ENCFF728IYI) 0 1211 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in thyroid_gland from ENCODE 3 (ENCFF728IYI)\ parent encTfChipPk off\ shortLabel thyroid CTCF 1\ subGroups cellType=thyroid_gland factor=CTCF\ track encTfChipPkENCFF728IYI\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_tpm_rev Saos-2W/AscorbicAcidBgp_00hr30minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_reverse 1 1212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep1%20%28A1%20T2%29.CNhs12382.12664-134I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12664-134I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_ctss_rev Saos-2W/AscorbicAcidBgp_00hr30minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_reverse 0 1212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep1%20%28A1%20T2%29.CNhs12382.12664-134I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12664-134I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF026ZWL thyroid CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in thyroid_gland from ENCODE 3 (ENCFF026ZWL) 0 1212 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in thyroid_gland from ENCODE 3 (ENCFF026ZWL)\ parent encTfChipPk off\ shortLabel thyroid CTCF 2\ subGroups cellType=thyroid_gland factor=CTCF\ track encTfChipPkENCFF026ZWL\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr30minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_forward 1 1213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep2%20%28A2%20T2%29.CNhs12861.12762-136B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12762-136B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr30minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_forward 0 1213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep2%20%28A2%20T2%29.CNhs12861.12762-136B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12762-136B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF989JUA thyroid CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in thyroid_gland from ENCODE 3 (ENCFF989JUA) 0 1213 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in thyroid_gland from ENCODE 3 (ENCFF989JUA)\ parent encTfChipPk off\ shortLabel thyroid CTCF 3\ subGroups cellType=thyroid_gland factor=CTCF\ track encTfChipPkENCFF989JUA\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_tpm_rev Saos-2W/AscorbicAcidBgp_00hr30minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_reverse 1 1214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep2%20%28A2%20T2%29.CNhs12861.12762-136B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12762-136B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_ctss_rev Saos-2W/AscorbicAcidBgp_00hr30minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_reverse 0 1214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep2%20%28A2%20T2%29.CNhs12861.12762-136B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12762-136B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF710ZQC thyroid POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in thyroid_gland from ENCODE 3 (ENCFF710ZQC) 0 1214 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in thyroid_gland from ENCODE 3 (ENCFF710ZQC)\ parent encTfChipPk off\ shortLabel thyroid POLR2A 1\ subGroups cellType=thyroid_gland factor=POLR2A\ track encTfChipPkENCFF710ZQC\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr30minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_forward 1 1215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep3%20%28A3%20T2%29.CNhs12954.12860-137D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12860-137D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr30minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_forward 0 1215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep3%20%28A3%20T2%29.CNhs12954.12860-137D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12860-137D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF445NPR thyroid POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in thyroid_gland from ENCODE 3 (ENCFF445NPR) 0 1215 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in thyroid_gland from ENCODE 3 (ENCFF445NPR)\ parent encTfChipPk off\ shortLabel thyroid POLR2A 2\ subGroups cellType=thyroid_gland factor=POLR2A\ track encTfChipPkENCFF445NPR\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_tpm_rev Saos-2W/AscorbicAcidBgp_00hr30minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_reverse 1 1216 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep3%20%28A3%20T2%29.CNhs12954.12860-137D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12860-137D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_ctss_rev Saos-2W/AscorbicAcidBgp_00hr30minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_reverse 0 1216 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep3%20%28A3%20T2%29.CNhs12954.12860-137D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12860-137D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF960TOX tibialArtery CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in tibial_artery from ENCODE 3 (ENCFF960TOX) 0 1216 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in tibial_artery from ENCODE 3 (ENCFF960TOX)\ parent encTfChipPk off\ shortLabel tibialArtery CTCF\ subGroups cellType=tibial_artery factor=CTCF\ track encTfChipPkENCFF960TOX\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr45minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_forward 1 1217 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep1%20%28A1%20T3%29.CNhs12383.12665-135A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12665-135A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr45minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_forward 0 1217 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep1%20%28A1%20T3%29.CNhs12383.12665-135A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12665-135A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF237VLQ tbialNerve CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in tibial_nerve from ENCODE 3 (ENCFF237VLQ) 0 1217 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in tibial_nerve from ENCODE 3 (ENCFF237VLQ)\ parent encTfChipPk off\ shortLabel tbialNerve CTCF 1\ subGroups cellType=tibial_nerve factor=CTCF\ track encTfChipPkENCFF237VLQ\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_tpm_rev Saos-2W/AscorbicAcidBgp_00hr45minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_reverse 1 1218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep1%20%28A1%20T3%29.CNhs12383.12665-135A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12665-135A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_ctss_rev Saos-2W/AscorbicAcidBgp_00hr45minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_reverse 0 1218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep1%20%28A1%20T3%29.CNhs12383.12665-135A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12665-135A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF611MLV tbialNerve CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in tibial_nerve from ENCODE 3 (ENCFF611MLV) 0 1218 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in tibial_nerve from ENCODE 3 (ENCFF611MLV)\ parent encTfChipPk off\ shortLabel tbialNerve CTCF 2\ subGroups cellType=tibial_nerve factor=CTCF\ track encTfChipPkENCFF611MLV\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr45minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_forward 1 1219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep2%20%28A2%20T3%29.CNhs12862.12763-136B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12763-136B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr45minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_forward 0 1219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep2%20%28A2%20T3%29.CNhs12862.12763-136B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12763-136B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF691IPU tibialNerve CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in tibial_nerve from ENCODE 3 (ENCFF691IPU) 0 1219 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in tibial_nerve from ENCODE 3 (ENCFF691IPU)\ parent encTfChipPk off\ shortLabel tibialNerve CTCF\ subGroups cellType=tibial_nerve factor=CTCF\ track encTfChipPkENCFF691IPU\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_tpm_rev Saos-2W/AscorbicAcidBgp_00hr45minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_reverse 1 1220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep2%20%28A2%20T3%29.CNhs12862.12763-136B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12763-136B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_ctss_rev Saos-2W/AscorbicAcidBgp_00hr45minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_reverse 0 1220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep2%20%28A2%20T3%29.CNhs12862.12763-136B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12763-136B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF848EEE tbialNerv EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in tibial_nerve from ENCODE 3 (ENCFF848EEE) 0 1220 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in tibial_nerve from ENCODE 3 (ENCFF848EEE)\ parent encTfChipPk off\ shortLabel tbialNerv EP300 1\ subGroups cellType=tibial_nerve factor=EP300\ track encTfChipPkENCFF848EEE\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr45minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_forward 1 1221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep3%20%28A3%20T3%29.CNhs12878.12861-137D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12861-137D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr45minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_forward 0 1221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep3%20%28A3%20T3%29.CNhs12878.12861-137D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12861-137D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF049JNK tbialNerv EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in tibial_nerve from ENCODE 3 (ENCFF049JNK) 0 1221 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in tibial_nerve from ENCODE 3 (ENCFF049JNK)\ parent encTfChipPk off\ shortLabel tbialNerv EP300 2\ subGroups cellType=tibial_nerve factor=EP300\ track encTfChipPkENCFF049JNK\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_tpm_rev Saos-2W/AscorbicAcidBgp_00hr45minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_reverse 1 1222 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep3%20%28A3%20T3%29.CNhs12878.12861-137D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12861-137D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_ctss_rev Saos-2W/AscorbicAcidBgp_00hr45minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_reverse 0 1222 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep3%20%28A3%20T3%29.CNhs12878.12861-137D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12861-137D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF355SDI tblNerve POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in tibial_nerve from ENCODE 3 (ENCFF355SDI) 0 1222 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in tibial_nerve from ENCODE 3 (ENCFF355SDI)\ parent encTfChipPk off\ shortLabel tblNerve POLR2A 1\ subGroups cellType=tibial_nerve factor=POLR2A\ track encTfChipPkENCFF355SDI\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr00minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_forward 1 1223 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep1%20%28A1%20T4%29.CNhs12384.12666-135A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12666-135A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr00minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_forward 0 1223 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep1%20%28A1%20T4%29.CNhs12384.12666-135A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12666-135A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF663DIG tblNerve POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in tibial_nerve from ENCODE 3 (ENCFF663DIG) 0 1223 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in tibial_nerve from ENCODE 3 (ENCFF663DIG)\ parent encTfChipPk off\ shortLabel tblNerve POLR2A 2\ subGroups cellType=tibial_nerve factor=POLR2A\ track encTfChipPkENCFF663DIG\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_tpm_rev Saos-2W/AscorbicAcidBgp_01hr00minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_reverse 1 1224 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep1%20%28A1%20T4%29.CNhs12384.12666-135A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12666-135A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_ctss_rev Saos-2W/AscorbicAcidBgp_01hr00minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_reverse 0 1224 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep1%20%28A1%20T4%29.CNhs12384.12666-135A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12666-135A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF907KEJ trnsvColon CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF907KEJ) 0 1224 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF907KEJ)\ parent encTfChipPk off\ shortLabel trnsvColon CTCF 1\ subGroups cellType=transverse_colon factor=CTCF\ track encTfChipPkENCFF907KEJ\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr00minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_forward 1 1225 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep2%20%28A2%20T4%29.CNhs12863.12764-136C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12764-136C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr00minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_forward 0 1225 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep2%20%28A2%20T4%29.CNhs12863.12764-136C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12764-136C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF607VAP trnsvColon CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF607VAP) 0 1225 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF607VAP)\ parent encTfChipPk off\ shortLabel trnsvColon CTCF 2\ subGroups cellType=transverse_colon factor=CTCF\ track encTfChipPkENCFF607VAP\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_tpm_rev Saos-2W/AscorbicAcidBgp_01hr00minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_reverse 1 1226 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep2%20%28A2%20T4%29.CNhs12863.12764-136C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12764-136C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_ctss_rev Saos-2W/AscorbicAcidBgp_01hr00minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_reverse 0 1226 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep2%20%28A2%20T4%29.CNhs12863.12764-136C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12764-136C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF538QPY trnsvColon CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF538QPY) 0 1226 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF538QPY)\ parent encTfChipPk off\ shortLabel trnsvColon CTCF 3\ subGroups cellType=transverse_colon factor=CTCF\ track encTfChipPkENCFF538QPY\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr00minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_forward 1 1227 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep3%20%28A3%20T4%29.CNhs12955.12862-137D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12862-137D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr00minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_forward 0 1227 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep3%20%28A3%20T4%29.CNhs12955.12862-137D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12862-137D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF693TBO trnsvColon CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF693TBO) 0 1227 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF693TBO)\ parent encTfChipPk off\ shortLabel trnsvColon CTCF 4\ subGroups cellType=transverse_colon factor=CTCF\ track encTfChipPkENCFF693TBO\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_tpm_rev Saos-2W/AscorbicAcidBgp_01hr00minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_reverse 1 1228 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep3%20%28A3%20T4%29.CNhs12955.12862-137D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12862-137D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_ctss_rev Saos-2W/AscorbicAcidBgp_01hr00minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_reverse 0 1228 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep3%20%28A3%20T4%29.CNhs12955.12862-137D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12862-137D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF244FQD transvCln EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in transverse_colon from ENCODE 3 (ENCFF244FQD) 0 1228 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in transverse_colon from ENCODE 3 (ENCFF244FQD)\ parent encTfChipPk off\ shortLabel transvCln EP300 1\ subGroups cellType=transverse_colon factor=EP300\ track encTfChipPkENCFF244FQD\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr20minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_forward 1 1229 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep1%20%28A1%20T5%29.CNhs12386.12667-135A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12667-135A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr20minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_forward 0 1229 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep1%20%28A1%20T5%29.CNhs12386.12667-135A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12667-135A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF079CRY transvCln EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in transverse_colon from ENCODE 3 (ENCFF079CRY) 0 1229 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in transverse_colon from ENCODE 3 (ENCFF079CRY)\ parent encTfChipPk off\ shortLabel transvCln EP300 2\ subGroups cellType=transverse_colon factor=EP300\ track encTfChipPkENCFF079CRY\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_tpm_rev Saos-2W/AscorbicAcidBgp_01hr20minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_reverse 1 1230 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep1%20%28A1%20T5%29.CNhs12386.12667-135A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12667-135A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_ctss_rev Saos-2W/AscorbicAcidBgp_01hr20minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_reverse 0 1230 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep1%20%28A1%20T5%29.CNhs12386.12667-135A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12667-135A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF580NSJ transvCln EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in transverse_colon from ENCODE 3 (ENCFF580NSJ) 0 1230 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in transverse_colon from ENCODE 3 (ENCFF580NSJ)\ parent encTfChipPk off\ shortLabel transvCln EP300 3\ subGroups cellType=transverse_colon factor=EP300\ track encTfChipPkENCFF580NSJ\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr20minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_forward 1 1231 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep2%20%28A2%20T5%29.CNhs12864.12765-136C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12765-136C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr20minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_forward 0 1231 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep2%20%28A2%20T5%29.CNhs12864.12765-136C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12765-136C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF185LTG trnsvCln POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF185LTG) 0 1231 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF185LTG)\ parent encTfChipPk off\ shortLabel trnsvCln POLR2A 1\ subGroups cellType=transverse_colon factor=POLR2A\ track encTfChipPkENCFF185LTG\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_tpm_rev Saos-2W/AscorbicAcidBgp_01hr20minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_reverse 1 1232 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep2%20%28A2%20T5%29.CNhs12864.12765-136C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12765-136C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_ctss_rev Saos-2W/AscorbicAcidBgp_01hr20minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_reverse 0 1232 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep2%20%28A2%20T5%29.CNhs12864.12765-136C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12765-136C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF211VGU trnsvCln POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF211VGU) 0 1232 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF211VGU)\ parent encTfChipPk off\ shortLabel trnsvCln POLR2A 2\ subGroups cellType=transverse_colon factor=POLR2A\ track encTfChipPkENCFF211VGU\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr20minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_forward 1 1233 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep3%20%28A3%20T5%29.CNhs12879.12863-137E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12863-137E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr20minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_forward 0 1233 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep3%20%28A3%20T5%29.CNhs12879.12863-137E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12863-137E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF228NVN trnsvCln POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF228NVN) 0 1233 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF228NVN)\ parent encTfChipPk off\ shortLabel trnsvCln POLR2A 3\ subGroups cellType=transverse_colon factor=POLR2A\ track encTfChipPkENCFF228NVN\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_tpm_rev Saos-2W/AscorbicAcidBgp_01hr20minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_reverse 1 1234 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep3%20%28A3%20T5%29.CNhs12879.12863-137E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12863-137E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_ctss_rev Saos-2W/AscorbicAcidBgp_01hr20minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_reverse 0 1234 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep3%20%28A3%20T5%29.CNhs12879.12863-137E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12863-137E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF028RZP trnsvCln POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF028RZP) 0 1234 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF028RZP)\ parent encTfChipPk off\ shortLabel trnsvCln POLR2A 4\ subGroups cellType=transverse_colon factor=POLR2A\ track encTfChipPkENCFF028RZP\ encTfChipPkENCFF869YGK lungUpLobe CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF869YGK) 0 1235 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF869YGK)\ parent encTfChipPk off\ shortLabel lungUpLobe CTCF 1\ subGroups cellType=upper_lobe_of_left_lung factor=CTCF\ track encTfChipPkENCFF869YGK\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr40minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_forward 1 1235 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep1%20%28A1%20T6%29.CNhs12387.12668-135A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12668-135A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr40minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_forward 0 1235 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep1%20%28A1%20T6%29.CNhs12387.12668-135A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12668-135A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF749CMN lungUpLobe CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF749CMN) 0 1236 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF749CMN)\ parent encTfChipPk off\ shortLabel lungUpLobe CTCF 2\ subGroups cellType=upper_lobe_of_left_lung factor=CTCF\ track encTfChipPkENCFF749CMN\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_tpm_rev Saos-2W/AscorbicAcidBgp_01hr40minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_reverse 1 1236 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep1%20%28A1%20T6%29.CNhs12387.12668-135A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12668-135A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_ctss_rev Saos-2W/AscorbicAcidBgp_01hr40minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_reverse 0 1236 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep1%20%28A1%20T6%29.CNhs12387.12668-135A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12668-135A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF254NYT lungUpLobe CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF254NYT) 0 1237 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF254NYT)\ parent encTfChipPk off\ shortLabel lungUpLobe CTCF 3\ subGroups cellType=upper_lobe_of_left_lung factor=CTCF\ track encTfChipPkENCFF254NYT\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr40minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_forward 1 1237 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep2%20%28A2%20T6%29.CNhs12866.12766-136C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12766-136C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr40minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_forward 0 1237 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep2%20%28A2%20T6%29.CNhs12866.12766-136C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12766-136C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF716XFO lungUpLobe CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF716XFO) 0 1238 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF716XFO)\ parent encTfChipPk off\ shortLabel lungUpLobe CTCF 4\ subGroups cellType=upper_lobe_of_left_lung factor=CTCF\ track encTfChipPkENCFF716XFO\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_tpm_rev Saos-2W/AscorbicAcidBgp_01hr40minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_reverse 1 1238 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep2%20%28A2%20T6%29.CNhs12866.12766-136C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12766-136C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_ctss_rev Saos-2W/AscorbicAcidBgp_01hr40minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_reverse 0 1238 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep2%20%28A2%20T6%29.CNhs12866.12766-136C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12766-136C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF348MWL lungUpLbe EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF348MWL) 0 1239 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF348MWL)\ parent encTfChipPk off\ shortLabel lungUpLbe EP300 1\ subGroups cellType=upper_lobe_of_left_lung factor=EP300\ track encTfChipPkENCFF348MWL\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr40minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_forward 1 1239 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep3%20%28A3%20T6%29.CNhs12880.12864-137E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12864-137E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr40minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_forward 0 1239 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep3%20%28A3%20T6%29.CNhs12880.12864-137E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12864-137E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF676WYA lungUpLbe EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF676WYA) 0 1240 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF676WYA)\ parent encTfChipPk off\ shortLabel lungUpLbe EP300 2\ subGroups cellType=upper_lobe_of_left_lung factor=EP300\ track encTfChipPkENCFF676WYA\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_tpm_rev Saos-2W/AscorbicAcidBgp_01hr40minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_reverse 1 1240 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep3%20%28A3%20T6%29.CNhs12880.12864-137E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12864-137E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_ctss_rev Saos-2W/AscorbicAcidBgp_01hr40minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_reverse 0 1240 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep3%20%28A3%20T6%29.CNhs12880.12864-137E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12864-137E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF833NHM lungUpLbe EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF833NHM) 0 1241 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF833NHM)\ parent encTfChipPk off\ shortLabel lungUpLbe EP300 3\ subGroups cellType=upper_lobe_of_left_lung factor=EP300\ track encTfChipPkENCFF833NHM\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_tpm_fwd Saos-2W/AscorbicAcidBgp_02hr00minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_forward 1 1241 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep1%20%28A1%20T7%29.CNhs12388.12669-135A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12669-135A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_ctss_fwd Saos-2W/AscorbicAcidBgp_02hr00minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_forward 0 1241 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep1%20%28A1%20T7%29.CNhs12388.12669-135A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12669-135A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF567XKZ lungUpLbe EP300 4 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF567XKZ) 0 1242 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF567XKZ)\ parent encTfChipPk off\ shortLabel lungUpLbe EP300 4\ subGroups cellType=upper_lobe_of_left_lung factor=EP300\ track encTfChipPkENCFF567XKZ\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_tpm_rev Saos-2W/AscorbicAcidBgp_02hr00minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_reverse 1 1242 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep1%20%28A1%20T7%29.CNhs12388.12669-135A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12669-135A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_ctss_rev Saos-2W/AscorbicAcidBgp_02hr00minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_reverse 0 1242 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep1%20%28A1%20T7%29.CNhs12388.12669-135A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12669-135A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF665TLS lungUpLb POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF665TLS) 0 1243 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF665TLS)\ parent encTfChipPk off\ shortLabel lungUpLb POLR2A 1\ subGroups cellType=upper_lobe_of_left_lung factor=POLR2A\ track encTfChipPkENCFF665TLS\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_tpm_fwd Saos-2W/AscorbicAcidBgp_02hr00minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_forward 1 1243 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep2%20%28A2%20T7%29.CNhs12867.12767-136C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12767-136C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_ctss_fwd Saos-2W/AscorbicAcidBgp_02hr00minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_forward 0 1243 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep2%20%28A2%20T7%29.CNhs12867.12767-136C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12767-136C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF468AEV lungUpLb POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF468AEV) 0 1244 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF468AEV)\ parent encTfChipPk off\ shortLabel lungUpLb POLR2A 2\ subGroups cellType=upper_lobe_of_left_lung factor=POLR2A\ track encTfChipPkENCFF468AEV\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_tpm_rev Saos-2W/AscorbicAcidBgp_02hr00minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_reverse 1 1244 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep2%20%28A2%20T7%29.CNhs12867.12767-136C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12767-136C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_ctss_rev Saos-2W/AscorbicAcidBgp_02hr00minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_reverse 0 1244 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep2%20%28A2%20T7%29.CNhs12867.12767-136C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12767-136C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF626AFW lungUpLb POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF626AFW) 0 1245 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF626AFW)\ parent encTfChipPk off\ shortLabel lungUpLb POLR2A 3\ subGroups cellType=upper_lobe_of_left_lung factor=POLR2A\ track encTfChipPkENCFF626AFW\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_tpm_fwd Saos-2W/AscorbicAcidBgp_02hr00minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_forward 1 1245 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep3%20%28A3%20T7%29.CNhs12881.12865-137E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12865-137E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_ctss_fwd Saos-2W/AscorbicAcidBgp_02hr00minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_forward 0 1245 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep3%20%28A3%20T7%29.CNhs12881.12865-137E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12865-137E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF834DID lungUpLb POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF834DID) 0 1246 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF834DID)\ parent encTfChipPk off\ shortLabel lungUpLb POLR2A 4\ subGroups cellType=upper_lobe_of_left_lung factor=POLR2A\ track encTfChipPkENCFF834DID\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_tpm_rev Saos-2W/AscorbicAcidBgp_02hr00minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_reverse 1 1246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep3%20%28A3%20T7%29.CNhs12881.12865-137E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12865-137E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_ctss_rev Saos-2W/AscorbicAcidBgp_02hr00minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_reverse 0 1246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep3%20%28A3%20T7%29.CNhs12881.12865-137E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12865-137E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_tpm_fwd Saos-2W/AscorbicAcidBgp_02hr30minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_forward 1 1247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep1%20%28A1%20T8%29.CNhs12389.12670-135A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12670-135A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_ctss_fwd Saos-2W/AscorbicAcidBgp_02hr30minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_forward 0 1247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep1%20%28A1%20T8%29.CNhs12389.12670-135A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12670-135A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF866EIC uterus CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in uterus from ENCODE 3 (ENCFF866EIC) 0 1247 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in uterus from ENCODE 3 (ENCFF866EIC)\ parent encTfChipPk off\ shortLabel uterus CTCF 1\ subGroups cellType=uterus factor=CTCF\ track encTfChipPkENCFF866EIC\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_tpm_rev Saos-2W/AscorbicAcidBgp_02hr30minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_reverse 1 1248 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep1%20%28A1%20T8%29.CNhs12389.12670-135A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12670-135A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_ctss_rev Saos-2W/AscorbicAcidBgp_02hr30minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_reverse 0 1248 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep1%20%28A1%20T8%29.CNhs12389.12670-135A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12670-135A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF179YWB uterus CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in uterus from ENCODE 3 (ENCFF179YWB) 0 1248 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in uterus from ENCODE 3 (ENCFF179YWB)\ parent encTfChipPk off\ shortLabel uterus CTCF 2\ subGroups cellType=uterus factor=CTCF\ track encTfChipPkENCFF179YWB\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_tpm_fwd Saos-2W/AscorbicAcidBgp_02hr30minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_forward 1 1249 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep2%20%28A2%20T8%29.CNhs12868.12768-136C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12768-136C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_ctss_fwd Saos-2W/AscorbicAcidBgp_02hr30minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_forward 0 1249 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep2%20%28A2%20T8%29.CNhs12868.12768-136C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12768-136C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF236XBY uterus POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in uterus from ENCODE 3 (ENCFF236XBY) 0 1249 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in uterus from ENCODE 3 (ENCFF236XBY)\ parent encTfChipPk off\ shortLabel uterus POLR2A 1\ subGroups cellType=uterus factor=POLR2A\ track encTfChipPkENCFF236XBY\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_tpm_rev Saos-2W/AscorbicAcidBgp_02hr30minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_reverse 1 1250 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep2%20%28A2%20T8%29.CNhs12868.12768-136C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12768-136C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_ctss_rev Saos-2W/AscorbicAcidBgp_02hr30minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_reverse 0 1250 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep2%20%28A2%20T8%29.CNhs12868.12768-136C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12768-136C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF198EUQ uterus POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in uterus from ENCODE 3 (ENCFF198EUQ) 0 1250 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in uterus from ENCODE 3 (ENCFF198EUQ)\ parent encTfChipPk off\ shortLabel uterus POLR2A 2\ subGroups cellType=uterus factor=POLR2A\ track encTfChipPkENCFF198EUQ\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_tpm_fwd Saos-2W/AscorbicAcidBgp_02hr30minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_forward 1 1251 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep3%20%28A3%20T8%29.CNhs12882.12866-137E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12866-137E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_ctss_fwd Saos-2W/AscorbicAcidBgp_02hr30minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_forward 0 1251 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep3%20%28A3%20T8%29.CNhs12882.12866-137E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12866-137E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF579GUD vagina CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in vagina from ENCODE 3 (ENCFF579GUD) 0 1251 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in vagina from ENCODE 3 (ENCFF579GUD)\ parent encTfChipPk off\ shortLabel vagina CTCF 1\ subGroups cellType=vagina factor=CTCF\ track encTfChipPkENCFF579GUD\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_tpm_rev Saos-2W/AscorbicAcidBgp_02hr30minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_reverse 1 1252 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep3%20%28A3%20T8%29.CNhs12882.12866-137E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12866-137E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_ctss_rev Saos-2W/AscorbicAcidBgp_02hr30minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_reverse 0 1252 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep3%20%28A3%20T8%29.CNhs12882.12866-137E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12866-137E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF508LRF vagina CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in vagina from ENCODE 3 (ENCFF508LRF) 0 1252 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in vagina from ENCODE 3 (ENCFF508LRF)\ parent encTfChipPk off\ shortLabel vagina CTCF 2\ subGroups cellType=vagina factor=CTCF\ track encTfChipPkENCFF508LRF\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_tpm_fwd Saos-2W/AscorbicAcidBgp_03hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_forward 1 1253 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep1%20%28A1%20T9%29.CNhs12390.12671-135A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12671-135A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_ctss_fwd Saos-2W/AscorbicAcidBgp_03hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_forward 0 1253 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep1%20%28A1%20T9%29.CNhs12390.12671-135A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12671-135A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF116VEG vagina EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in vagina from ENCODE 3 (ENCFF116VEG) 0 1253 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in vagina from ENCODE 3 (ENCFF116VEG)\ parent encTfChipPk off\ shortLabel vagina EP300 1\ subGroups cellType=vagina factor=EP300\ track encTfChipPkENCFF116VEG\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_tpm_rev Saos-2W/AscorbicAcidBgp_03hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_reverse 1 1254 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep1%20%28A1%20T9%29.CNhs12390.12671-135A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12671-135A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_ctss_rev Saos-2W/AscorbicAcidBgp_03hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_reverse 0 1254 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep1%20%28A1%20T9%29.CNhs12390.12671-135A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12671-135A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF242HMY vagina EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in vagina from ENCODE 3 (ENCFF242HMY) 0 1254 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in vagina from ENCODE 3 (ENCFF242HMY)\ parent encTfChipPk off\ shortLabel vagina EP300 2\ subGroups cellType=vagina factor=EP300\ track encTfChipPkENCFF242HMY\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_tpm_fwd Saos-2W/AscorbicAcidBgp_03hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_forward 1 1255 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep2%20%28A2%20T9%29.CNhs12869.12769-136C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12769-136C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_ctss_fwd Saos-2W/AscorbicAcidBgp_03hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_forward 0 1255 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep2%20%28A2%20T9%29.CNhs12869.12769-136C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12769-136C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF865QLX vagina POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in vagina from ENCODE 3 (ENCFF865QLX) 0 1255 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in vagina from ENCODE 3 (ENCFF865QLX)\ parent encTfChipPk off\ shortLabel vagina POLR2A 1\ subGroups cellType=vagina factor=POLR2A\ track encTfChipPkENCFF865QLX\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_tpm_rev Saos-2W/AscorbicAcidBgp_03hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_reverse 1 1256 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep2%20%28A2%20T9%29.CNhs12869.12769-136C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12769-136C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_ctss_rev Saos-2W/AscorbicAcidBgp_03hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_reverse 0 1256 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep2%20%28A2%20T9%29.CNhs12869.12769-136C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12769-136C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF635MUK vagina POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in vagina from ENCODE 3 (ENCFF635MUK) 0 1256 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in vagina from ENCODE 3 (ENCFF635MUK)\ parent encTfChipPk off\ shortLabel vagina POLR2A 2\ subGroups cellType=vagina factor=POLR2A\ track encTfChipPkENCFF635MUK\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_tpm_fwd Saos-2W/AscorbicAcidBgp_03hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_forward 1 1257 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep3%20%28A3%20T9%29.CNhs12883.12867-137E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12867-137E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_ctss_fwd Saos-2W/AscorbicAcidBgp_03hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_forward 0 1257 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep3%20%28A3%20T9%29.CNhs12883.12867-137E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12867-137E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_tpm_rev Saos-2W/AscorbicAcidBgp_03hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_reverse 1 1258 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep3%20%28A3%20T9%29.CNhs12883.12867-137E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12867-137E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_ctss_rev Saos-2W/AscorbicAcidBgp_03hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_reverse 0 1258 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep3%20%28A3%20T9%29.CNhs12883.12867-137E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12867-137E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_tpm_fwd Saos-2W/AscorbicAcidBgp_04hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_forward 1 1259 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep1%20%28A1%20T10%29.CNhs12391.12672-135A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12672-135A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_ctss_fwd Saos-2W/AscorbicAcidBgp_04hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_forward 0 1259 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep1%20%28A1%20T10%29.CNhs12391.12672-135A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12672-135A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_tpm_rev Saos-2W/AscorbicAcidBgp_04hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_reverse 1 1260 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep1%20%28A1%20T10%29.CNhs12391.12672-135A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12672-135A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_ctss_rev Saos-2W/AscorbicAcidBgp_04hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_reverse 0 1260 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep1%20%28A1%20T10%29.CNhs12391.12672-135A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12672-135A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_tpm_fwd Saos-2W/AscorbicAcidBgp_04hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_forward 1 1261 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep2%20%28A2%20T10%29.CNhs12870.12770-136C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12770-136C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_ctss_fwd Saos-2W/AscorbicAcidBgp_04hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_forward 0 1261 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep2%20%28A2%20T10%29.CNhs12870.12770-136C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12770-136C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_tpm_rev Saos-2W/AscorbicAcidBgp_04hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_reverse 1 1262 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep2%20%28A2%20T10%29.CNhs12870.12770-136C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12770-136C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_ctss_rev Saos-2W/AscorbicAcidBgp_04hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_reverse 0 1262 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep2%20%28A2%20T10%29.CNhs12870.12770-136C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12770-136C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_tpm_fwd Saos-2W/AscorbicAcidBgp_04hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_forward 1 1263 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep3%20%28A3%20T10%29.CNhs12884.12868-137E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12868-137E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_ctss_fwd Saos-2W/AscorbicAcidBgp_04hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_forward 0 1263 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep3%20%28A3%20T10%29.CNhs12884.12868-137E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12868-137E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_tpm_rev Saos-2W/AscorbicAcidBgp_04hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_reverse 1 1264 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep3%20%28A3%20T10%29.CNhs12884.12868-137E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12868-137E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_ctss_rev Saos-2W/AscorbicAcidBgp_04hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_reverse 0 1264 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep3%20%28A3%20T10%29.CNhs12884.12868-137E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12868-137E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_tpm_fwd Saos-2W/AscorbicAcidBgp_08hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_forward 1 1265 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep1%20%28A1%20T11%29.CNhs12392.12673-135A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12673-135A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_ctss_fwd Saos-2W/AscorbicAcidBgp_08hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_forward 0 1265 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep1%20%28A1%20T11%29.CNhs12392.12673-135A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12673-135A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_tpm_rev Saos-2W/AscorbicAcidBgp_08hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_reverse 1 1266 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep1%20%28A1%20T11%29.CNhs12392.12673-135A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12673-135A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_ctss_rev Saos-2W/AscorbicAcidBgp_08hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_reverse 0 1266 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep1%20%28A1%20T11%29.CNhs12392.12673-135A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12673-135A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_tpm_fwd Saos-2W/AscorbicAcidBgp_08hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_forward 1 1267 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep2%20%28A2%20T11%29.CNhs12871.12771-136C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12771-136C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_ctss_fwd Saos-2W/AscorbicAcidBgp_08hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_forward 0 1267 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep2%20%28A2%20T11%29.CNhs12871.12771-136C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12771-136C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_tpm_rev Saos-2W/AscorbicAcidBgp_08hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_reverse 1 1268 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep2%20%28A2%20T11%29.CNhs12871.12771-136C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12771-136C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_ctss_rev Saos-2W/AscorbicAcidBgp_08hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_reverse 0 1268 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep2%20%28A2%20T11%29.CNhs12871.12771-136C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12771-136C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_tpm_fwd Saos-2W/AscorbicAcidBgp_08hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_forward 1 1269 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep3%20%28A3%20T11%29.CNhs12885.12869-137E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12869-137E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_ctss_fwd Saos-2W/AscorbicAcidBgp_08hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_forward 0 1269 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep3%20%28A3%20T11%29.CNhs12885.12869-137E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12869-137E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_tpm_rev Saos-2W/AscorbicAcidBgp_08hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_reverse 1 1270 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep3%20%28A3%20T11%29.CNhs12885.12869-137E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12869-137E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_ctss_rev Saos-2W/AscorbicAcidBgp_08hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_reverse 0 1270 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep3%20%28A3%20T11%29.CNhs12885.12869-137E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12869-137E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_tpm_fwd Saos-2W/AscorbicAcidBgp_24hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_forward 1 1271 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep1%20%28A1%20T12%29.CNhs12393.12674-135B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12674-135B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_ctss_fwd Saos-2W/AscorbicAcidBgp_24hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_forward 0 1271 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep1%20%28A1%20T12%29.CNhs12393.12674-135B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12674-135B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_tpm_rev Saos-2W/AscorbicAcidBgp_24hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_reverse 1 1272 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep1%20%28A1%20T12%29.CNhs12393.12674-135B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12674-135B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_ctss_rev Saos-2W/AscorbicAcidBgp_24hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_reverse 0 1272 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep1%20%28A1%20T12%29.CNhs12393.12674-135B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12674-135B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_tpm_fwd Saos-2W/AscorbicAcidBgp_24hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_forward 1 1273 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep2%20%28A2%20T12%29.CNhs12872.12772-136C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12772-136C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_ctss_fwd Saos-2W/AscorbicAcidBgp_24hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_forward 0 1273 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep2%20%28A2%20T12%29.CNhs12872.12772-136C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12772-136C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_tpm_rev Saos-2W/AscorbicAcidBgp_24hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_reverse 1 1274 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep2%20%28A2%20T12%29.CNhs12872.12772-136C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12772-136C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_ctss_rev Saos-2W/AscorbicAcidBgp_24hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_reverse 0 1274 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep2%20%28A2%20T12%29.CNhs12872.12772-136C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12772-136C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_tpm_fwd Saos-2W/AscorbicAcidBgp_24hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_forward 1 1275 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep3%20%28A3%20T12%29.CNhs12886.12870-137E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12870-137E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_ctss_fwd Saos-2W/AscorbicAcidBgp_24hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_forward 0 1275 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep3%20%28A3%20T12%29.CNhs12886.12870-137E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12870-137E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_tpm_rev Saos-2W/AscorbicAcidBgp_24hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_reverse 1 1276 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep3%20%28A3%20T12%29.CNhs12886.12870-137E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12870-137E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_ctss_rev Saos-2W/AscorbicAcidBgp_24hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_reverse 0 1276 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep3%20%28A3%20T12%29.CNhs12886.12870-137E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12870-137E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_tpm_fwd Saos-2W/AscorbicAcidBgp_Day04Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_forward 1 1277 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep1%20%28A1%20T13%29.CNhs12394.12675-135B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12675-135B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_ctss_fwd Saos-2W/AscorbicAcidBgp_Day04Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_forward 0 1277 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep1%20%28A1%20T13%29.CNhs12394.12675-135B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12675-135B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_tpm_rev Saos-2W/AscorbicAcidBgp_Day04Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_reverse 1 1278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep1%20%28A1%20T13%29.CNhs12394.12675-135B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12675-135B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_ctss_rev Saos-2W/AscorbicAcidBgp_Day04Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_reverse 0 1278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep1%20%28A1%20T13%29.CNhs12394.12675-135B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12675-135B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_tpm_fwd Saos-2W/AscorbicAcidBgp_Day04Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_forward 1 1279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep2%20%28A2%20T13%29.CNhs12873.12773-136D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12773-136D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_ctss_fwd Saos-2W/AscorbicAcidBgp_Day04Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_forward 0 1279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep2%20%28A2%20T13%29.CNhs12873.12773-136D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12773-136D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_tpm_rev Saos-2W/AscorbicAcidBgp_Day04Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_reverse 1 1280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep2%20%28A2%20T13%29.CNhs12873.12773-136D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12773-136D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_ctss_rev Saos-2W/AscorbicAcidBgp_Day04Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_reverse 0 1280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep2%20%28A2%20T13%29.CNhs12873.12773-136D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12773-136D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_tpm_fwd Saos-2W/AscorbicAcidBgp_Day04Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_forward 1 1281 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep3%20%28A3%20T13%29.CNhs12887.12871-137E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12871-137E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_ctss_fwd Saos-2W/AscorbicAcidBgp_Day04Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_forward 0 1281 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep3%20%28A3%20T13%29.CNhs12887.12871-137E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12871-137E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_tpm_rev Saos-2W/AscorbicAcidBgp_Day04Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_reverse 1 1282 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep3%20%28A3%20T13%29.CNhs12887.12871-137E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12871-137E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_ctss_rev Saos-2W/AscorbicAcidBgp_Day04Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_reverse 0 1282 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep3%20%28A3%20T13%29.CNhs12887.12871-137E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12871-137E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_tpm_fwd Saos-2W/AscorbicAcidBgp_Day07Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_forward 1 1283 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep1%20%28A1%20T14%29.CNhs12395.12676-135B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12676-135B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_ctss_fwd Saos-2W/AscorbicAcidBgp_Day07Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_forward 0 1283 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep1%20%28A1%20T14%29.CNhs12395.12676-135B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12676-135B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_tpm_rev Saos-2W/AscorbicAcidBgp_Day07Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_reverse 1 1284 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep1%20%28A1%20T14%29.CNhs12395.12676-135B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12676-135B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_ctss_rev Saos-2W/AscorbicAcidBgp_Day07Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_reverse 0 1284 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep1%20%28A1%20T14%29.CNhs12395.12676-135B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12676-135B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_tpm_fwd Saos-2W/AscorbicAcidBgp_Day07Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_forward 1 1285 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep2%20%28A2%20T14%29.CNhs12874.12774-136D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12774-136D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_ctss_fwd Saos-2W/AscorbicAcidBgp_Day07Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_forward 0 1285 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep2%20%28A2%20T14%29.CNhs12874.12774-136D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12774-136D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_tpm_rev Saos-2W/AscorbicAcidBgp_Day07Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_reverse 1 1286 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep2%20%28A2%20T14%29.CNhs12874.12774-136D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12774-136D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_ctss_rev Saos-2W/AscorbicAcidBgp_Day07Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_reverse 0 1286 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep2%20%28A2%20T14%29.CNhs12874.12774-136D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12774-136D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_tpm_fwd Saos-2W/AscorbicAcidBgp_Day07Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_forward 1 1287 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep3%20%28A3%20T14%29.CNhs12888.12872-137F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12872-137F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_ctss_fwd Saos-2W/AscorbicAcidBgp_Day07Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_forward 0 1287 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep3%20%28A3%20T14%29.CNhs12888.12872-137F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12872-137F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_tpm_rev Saos-2W/AscorbicAcidBgp_Day07Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_reverse 1 1288 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep3%20%28A3%20T14%29.CNhs12888.12872-137F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12872-137F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_ctss_rev Saos-2W/AscorbicAcidBgp_Day07Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_reverse 0 1288 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep3%20%28A3%20T14%29.CNhs12888.12872-137F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12872-137F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_tpm_fwd Saos-2W/AscorbicAcidBgp_Day14Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_forward 1 1289 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep1%20%28A1%20T15%29.CNhs12396.12677-135B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12677-135B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_ctss_fwd Saos-2W/AscorbicAcidBgp_Day14Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_forward 0 1289 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep1%20%28A1%20T15%29.CNhs12396.12677-135B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12677-135B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_tpm_rev Saos-2W/AscorbicAcidBgp_Day14Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_reverse 1 1290 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep1%20%28A1%20T15%29.CNhs12396.12677-135B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12677-135B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_ctss_rev Saos-2W/AscorbicAcidBgp_Day14Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_reverse 0 1290 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep1%20%28A1%20T15%29.CNhs12396.12677-135B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12677-135B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_tpm_fwd Saos-2W/AscorbicAcidBgp_Day14Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_forward 1 1291 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep2%20%28A2%20T15%29.CNhs12953.12775-136D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12775-136D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_ctss_fwd Saos-2W/AscorbicAcidBgp_Day14Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_forward 0 1291 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep2%20%28A2%20T15%29.CNhs12953.12775-136D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12775-136D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_tpm_rev Saos-2W/AscorbicAcidBgp_Day14Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_reverse 1 1292 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep2%20%28A2%20T15%29.CNhs12953.12775-136D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12775-136D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_ctss_rev Saos-2W/AscorbicAcidBgp_Day14Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_reverse 0 1292 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep2%20%28A2%20T15%29.CNhs12953.12775-136D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12775-136D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_tpm_fwd Saos-2W/AscorbicAcidBgp_Day14Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_forward 1 1293 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep3%20%28A3%20T15%29.CNhs12890.12873-137F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12873-137F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_ctss_fwd Saos-2W/AscorbicAcidBgp_Day14Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_forward 0 1293 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep3%20%28A3%20T15%29.CNhs12890.12873-137F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12873-137F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_tpm_rev Saos-2W/AscorbicAcidBgp_Day14Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_reverse 1 1294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep3%20%28A3%20T15%29.CNhs12890.12873-137F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12873-137F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_ctss_rev Saos-2W/AscorbicAcidBgp_Day14Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_reverse 0 1294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep3%20%28A3%20T15%29.CNhs12890.12873-137F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12873-137F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_tpm_fwd Saos-2W/AscorbicAcidBgp_Day21Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_forward 1 1295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep1%20%28A1%20T16%29.CNhs12397.12678-135B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12678-135B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_ctss_fwd Saos-2W/AscorbicAcidBgp_Day21Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_forward 0 1295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep1%20%28A1%20T16%29.CNhs12397.12678-135B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12678-135B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_tpm_rev Saos-2W/AscorbicAcidBgp_Day21Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_reverse 1 1296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep1%20%28A1%20T16%29.CNhs12397.12678-135B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12678-135B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_ctss_rev Saos-2W/AscorbicAcidBgp_Day21Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_reverse 0 1296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep1%20%28A1%20T16%29.CNhs12397.12678-135B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12678-135B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_tpm_fwd Saos-2W/AscorbicAcidBgp_Day21Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_forward 1 1297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep2%20%28A2%20T16%29.CNhs12875.12776-136D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12776-136D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_ctss_fwd Saos-2W/AscorbicAcidBgp_Day21Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_forward 0 1297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep2%20%28A2%20T16%29.CNhs12875.12776-136D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12776-136D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_tpm_rev Saos-2W/AscorbicAcidBgp_Day21Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_reverse 1 1298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep2%20%28A2%20T16%29.CNhs12875.12776-136D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12776-136D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_ctss_rev Saos-2W/AscorbicAcidBgp_Day21Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_reverse 0 1298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep2%20%28A2%20T16%29.CNhs12875.12776-136D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12776-136D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep3A3T16_CNhs12891_tpm_fwd Saos-2W/AscorbicAcidBgp_Day21Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep3 (A3 T16)_CNhs12891_12874-137F3_forward 1 1299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12874-137F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep3%20%28A3%20T16%29.CNhs12891.12874-137F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep3 (A3 T16)_CNhs12891_12874-137F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12874-137F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep3A3T16_CNhs12891_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12874-137F3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep3A3T16_CNhs12891_ctss_fwd Saos-2W/AscorbicAcidBgp_Day21Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep3 (A3 T16)_CNhs12891_12874-137F3_forward 0 1299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12874-137F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep3%20%28A3%20T16%29.CNhs12891.12874-137F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep3 (A3 T16)_CNhs12891_12874-137F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12874-137F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep3A3T16_CNhs12891_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12874-137F3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep3A3T16_CNhs12891_tpm_rev Saos-2W/AscorbicAcidBgp_Day21Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep3 (A3 T16)_CNhs12891_12874-137F3_reverse 1 1300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12874-137F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep3%20%28A3%20T16%29.CNhs12891.12874-137F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep3 (A3 T16)_CNhs12891_12874-137F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12874-137F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep3A3T16_CNhs12891_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12874-137F3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep3A3T16_CNhs12891_ctss_rev Saos-2W/AscorbicAcidBgp_Day21Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep3 (A3 T16)_CNhs12891_12874-137F3_reverse 0 1300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12874-137F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep3%20%28A3%20T16%29.CNhs12891.12874-137F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep3 (A3 T16)_CNhs12891_12874-137F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12874-137F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep3A3T16_CNhs12891_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12874-137F3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_tpm_fwd Saos-2W/AscorbicAcidBgp_Day28Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_forward 1 1301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep1%20%28A1%20T17%29.CNhs11919.12679-135B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12679-135B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_ctss_fwd Saos-2W/AscorbicAcidBgp_Day28Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_forward 0 1301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep1%20%28A1%20T17%29.CNhs11919.12679-135B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12679-135B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_tpm_rev Saos-2W/AscorbicAcidBgp_Day28Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_reverse 1 1302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep1%20%28A1%20T17%29.CNhs11919.12679-135B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12679-135B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_ctss_rev Saos-2W/AscorbicAcidBgp_Day28Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_reverse 0 1302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep1%20%28A1%20T17%29.CNhs11919.12679-135B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12679-135B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_tpm_fwd Saos-2W/AscorbicAcidBgp_Day28Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_forward 1 1303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep2%20%28A2%20T17%29.CNhs12876.12777-136D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12777-136D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_ctss_fwd Saos-2W/AscorbicAcidBgp_Day28Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_forward 0 1303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep2%20%28A2%20T17%29.CNhs12876.12777-136D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12777-136D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_tpm_rev Saos-2W/AscorbicAcidBgp_Day28Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_reverse 1 1304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep2%20%28A2%20T17%29.CNhs12876.12777-136D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12777-136D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_ctss_rev Saos-2W/AscorbicAcidBgp_Day28Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_reverse 0 1304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep2%20%28A2%20T17%29.CNhs12876.12777-136D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12777-136D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_tpm_fwd Saos-2W/AscorbicAcidBgp_Day28Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_forward 1 1305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep3%20%28A3%20T17%29.CNhs12892.12875-137F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12875-137F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_ctss_fwd Saos-2W/AscorbicAcidBgp_Day28Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_forward 0 1305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep3%20%28A3%20T17%29.CNhs12892.12875-137F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12875-137F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_tpm_rev Saos-2W/AscorbicAcidBgp_Day28Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_reverse 1 1306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep3%20%28A3%20T17%29.CNhs12892.12875-137F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12875-137F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_ctss_rev Saos-2W/AscorbicAcidBgp_Day28Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_reverse 0 1306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep3%20%28A3%20T17%29.CNhs12892.12875-137F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12875-137F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4\ urlLabel FANTOM5 Details:\ MesodermalTumorCellLineHIRSBM_CNhs12191_tpm_fwd Cl:HIRS-BM+ bigWig mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_forward 1 1307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesodermal%20tumor%20cell%20line%3aHIRS-BM.CNhs12191.10696-109G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10696-109G3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HIRS-BM+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track MesodermalTumorCellLineHIRSBM_CNhs12191_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3\ urlLabel FANTOM5 Details:\ MesodermalTumorCellLineHIRSBM_CNhs12191_ctss_fwd Cl:HIRS-BM+ bigWig mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_forward 0 1307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesodermal%20tumor%20cell%20line%3aHIRS-BM.CNhs12191.10696-109G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10696-109G3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HIRS-BM+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track MesodermalTumorCellLineHIRSBM_CNhs12191_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3\ urlLabel FANTOM5 Details:\ MesodermalTumorCellLineHIRSBM_CNhs12191_tpm_rev Cl:HIRS-BM- bigWig mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_reverse 1 1308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesodermal%20tumor%20cell%20line%3aHIRS-BM.CNhs12191.10696-109G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10696-109G3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HIRS-BM-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track MesodermalTumorCellLineHIRSBM_CNhs12191_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3\ urlLabel FANTOM5 Details:\ MesodermalTumorCellLineHIRSBM_CNhs12191_ctss_rev Cl:HIRS-BM- bigWig mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_reverse 0 1308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesodermal%20tumor%20cell%20line%3aHIRS-BM.CNhs12191.10696-109G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10696-109G3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HIRS-BM-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track MesodermalTumorCellLineHIRSBM_CNhs12191_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3\ urlLabel FANTOM5 Details:\ LeiomyosarcomaCellLineHs5_T_CNhs12192_tpm_fwd Cl:Hs5_T+ bigWig leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_forward 1 1309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyosarcoma%20cell%20line%3aHs%205%2eT.CNhs12192.10722-110A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10722-110A2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs5_T+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track LeiomyosarcomaCellLineHs5_T_CNhs12192_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2\ urlLabel FANTOM5 Details:\ LeiomyosarcomaCellLineHs5_T_CNhs12192_ctss_fwd Cl:Hs5_T+ bigWig leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_forward 0 1309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyosarcoma%20cell%20line%3aHs%205%2eT.CNhs12192.10722-110A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10722-110A2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs5_T+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track LeiomyosarcomaCellLineHs5_T_CNhs12192_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2\ urlLabel FANTOM5 Details:\ LeiomyosarcomaCellLineHs5_T_CNhs12192_tpm_rev Cl:Hs5_T- bigWig leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_reverse 1 1310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyosarcoma%20cell%20line%3aHs%205%2eT.CNhs12192.10722-110A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10722-110A2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs5_T-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track LeiomyosarcomaCellLineHs5_T_CNhs12192_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2\ urlLabel FANTOM5 Details:\ LeiomyosarcomaCellLineHs5_T_CNhs12192_ctss_rev Cl:Hs5_T- bigWig leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_reverse 0 1310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyosarcoma%20cell%20line%3aHs%205%2eT.CNhs12192.10722-110A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10722-110A2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs5_T-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track LeiomyosarcomaCellLineHs5_T_CNhs12192_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM0CellLineKasumi3_CNhs13241_tpm_fwd Cl:Kasumi-3+ bigWig acute myeloid leukemia (FAB M0) cell line:Kasumi-3_CNhs13241_10789-110H6_forward 1 1311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10789-110H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M0%29%20cell%20line%3aKasumi-3.CNhs13241.10789-110H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M0) cell line:Kasumi-3_CNhs13241_10789-110H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10789-110H6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Kasumi-3+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM0CellLineKasumi3_CNhs13241_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10789-110H6\ urlLabel FANTOM5 Details:\ 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line:10964C_CNhs11722_10569-108B2_reverse 1 1318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10569-108B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoma%20cell%20line%3a10964C.CNhs11722.10569-108B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel leiomyoma cell line:10964C_CNhs11722_10569-108B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10569-108B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:10964C-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LeiomyomaCellLine10964C_CNhs11722_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10569-108B2\ urlLabel FANTOM5 Details:\ LeiomyomaCellLine10964C_CNhs11722_ctss_rev Cl:10964C- bigWig leiomyoma cell line:10964C_CNhs11722_10569-108B2_reverse 0 1318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10569-108B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoma%20cell%20line%3a10964C.CNhs11722.10569-108B2.hg38.ctss.rev.bw\ color 0,0,255\ 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type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10510-107D6\ urlLabel FANTOM5 Details:\ OsteosarcomaCellLine143BTKneoR_CNhs11279_tpm_rev Cl:143B/TK^(-)neo^(R)- bigWig osteosarcoma cell line:143B/TK^(-)neo^(R)_CNhs11279_10510-107D6_reverse 1 1320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10510-107D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/osteosarcoma%20cell%20line%3a143B%20TK%5e%28-%29neo%5e%28R%29.CNhs11279.10510-107D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel osteosarcoma cell line:143B/TK^(-)neo^(R)_CNhs11279_10510-107D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10510-107D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:143B/TK^(-)neo^(R)-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OsteosarcomaCellLine143BTKneoR_CNhs11279_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10510-107D6\ urlLabel FANTOM5 Details:\ OsteosarcomaCellLine143BTKneoR_CNhs11279_ctss_rev Cl:143B/TK^(-)neo^(R)- 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longLabel neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10508-107D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:CHP-134+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroblastomaCellLineCHP134_CNhs11276_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4\ urlLabel FANTOM5 Details:\ NeuroblastomaCellLineCHP134_CNhs11276_ctss_fwd Cl:CHP-134+ bigWig neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_forward 0 1367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroblastoma%20cell%20line%3aCHP-134.CNhs11276.10508-107D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10508-107D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:CHP-134+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroblastomaCellLineCHP134_CNhs11276_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4\ urlLabel FANTOM5 Details:\ NeuroblastomaCellLineCHP134_CNhs11276_tpm_rev Cl:CHP-134- bigWig neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_reverse 1 1368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroblastoma%20cell%20line%3aCHP-134.CNhs11276.10508-107D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10508-107D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:CHP-134-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroblastomaCellLineCHP134_CNhs11276_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4\ urlLabel FANTOM5 Details:\ NeuroblastomaCellLineCHP134_CNhs11276_ctss_rev Cl:CHP-134- bigWig neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_reverse 0 1368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroblastoma%20cell%20line%3aCHP-134.CNhs11276.10508-107D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10508-107D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:CHP-134-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroblastomaCellLineCHP134_CNhs11276_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4\ urlLabel FANTOM5 Details:\ CordBloodDerivedCellLineCOBLa24hInfectionC_CNhs11049_tpm_fwd Cl:COBL-a24hinfection(-C)+ bigWig cord blood derived cell line:COBL-a 24h infection(-C)_CNhs11049_10452-106G2_forward 1 1369 255 0 0 255 127 127 0 0 0 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/gbdb/hg38/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%2024h%20infection%28-C%29.CNhs11049.10452-106G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cord blood derived cell line:COBL-a 24h infection(-C)_CNhs11049_10452-106G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10452-106G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COBL-a24hinfection(-C)+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CordBloodDerivedCellLineCOBLa24hInfectionC_CNhs11049_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10452-106G2\ urlLabel FANTOM5 Details:\ CordBloodDerivedCellLineCOBLa24hInfectionC_CNhs11049_tpm_rev Cl:COBL-a24hinfection(-C)- bigWig cord blood derived cell line:COBL-a 24h infection(-C)_CNhs11049_10452-106G2_reverse 1 1370 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10452-106G2 regulation 0 bigDataUrl 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/gbdb/hg38/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%2024h%20infection%28-C%29.CNhs11049.10452-106G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cord blood derived cell line:COBL-a 24h infection(-C)_CNhs11049_10452-106G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10452-106G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COBL-a24hinfection(-C)-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CordBloodDerivedCellLineCOBLa24hInfectionC_CNhs11049_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10452-106G2\ urlLabel FANTOM5 Details:\ CordBloodDerivedCellLineCOBLa24hInfection_CNhs11050_tpm_fwd Cl:COBL-a24hinfection+ bigWig cord blood derived cell line:COBL-a 24h infection_CNhs11050_10453-106G3_forward 1 1371 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10453-106G3 regulation 0 bigDataUrl 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color 255,0,0\ longLabel cord blood derived cell line:COBL-a 24h infection_CNhs11050_10453-106G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10453-106G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COBL-a24hinfection+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CordBloodDerivedCellLineCOBLa24hInfection_CNhs11050_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10453-106G3\ urlLabel FANTOM5 Details:\ CordBloodDerivedCellLineCOBLa24hInfection_CNhs11050_tpm_rev Cl:COBL-a24hinfection- bigWig cord blood derived cell line:COBL-a 24h infection_CNhs11050_10453-106G3_reverse 1 1372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10453-106G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%2024h%20infection.CNhs11050.10453-106G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cord blood derived cell line:COBL-a 24h infection_CNhs11050_10453-106G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10453-106G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COBL-a24hinfection-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CordBloodDerivedCellLineCOBLa24hInfection_CNhs11050_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10453-106G3\ urlLabel FANTOM5 Details:\ CordBloodDerivedCellLineCOBLa24hInfection_CNhs11050_ctss_rev Cl:COBL-a24hinfection- bigWig cord blood derived cell line:COBL-a 24h infection_CNhs11050_10453-106G3_reverse 0 1372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10453-106G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%2024h%20infection.CNhs11050.10453-106G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cord blood derived cell line:COBL-a 24h infection_CNhs11050_10453-106G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10453-106G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COBL-a24hinfection-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CordBloodDerivedCellLineCOBLa24hInfection_CNhs11050_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10453-106G3\ urlLabel FANTOM5 Details:\ CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_tpm_fwd Cl:COBL-auntreated+ bigWig cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_forward 1 1373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%20untreated.CNhs11045.10449-106F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10449-106F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COBL-auntreated+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8\ urlLabel FANTOM5 Details:\ CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_ctss_fwd Cl:COBL-auntreated+ bigWig cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_forward 0 1373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%20untreated.CNhs11045.10449-106F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10449-106F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COBL-auntreated+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8\ urlLabel FANTOM5 Details:\ CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_tpm_rev Cl:COBL-auntreated- bigWig cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_reverse 1 1374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%20untreated.CNhs11045.10449-106F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10449-106F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COBL-auntreated-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8\ urlLabel FANTOM5 Details:\ CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_ctss_rev Cl:COBL-auntreated- bigWig cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_reverse 0 1374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%20untreated.CNhs11045.10449-106F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10449-106F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COBL-auntreated-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8\ urlLabel FANTOM5 Details:\ ColonCarcinomaCellLineCOLO320_CNhs10737_tpm_fwd Cl:COLO-320+ bigWig colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_forward 1 1375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%20carcinoma%20cell%20line%3aCOLO-320.CNhs10737.10420-106C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10420-106C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COLO-320+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ColonCarcinomaCellLineCOLO320_CNhs10737_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6\ urlLabel FANTOM5 Details:\ ColonCarcinomaCellLineCOLO320_CNhs10737_ctss_fwd Cl:COLO-320+ bigWig colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_forward 0 1375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%20carcinoma%20cell%20line%3aCOLO-320.CNhs10737.10420-106C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_forward\ maxHeightPixels 100:8:8\ 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ColonCarcinomaCellLineCOLO320_CNhs10737_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6\ urlLabel FANTOM5 Details:\ ColonCarcinomaCellLineCOLO320_CNhs10737_ctss_rev Cl:COLO-320- bigWig colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_reverse 0 1376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%20carcinoma%20cell%20line%3aCOLO-320.CNhs10737.10420-106C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10420-106C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COLO-320-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ColonCarcinomaCellLineCOLO320_CNhs10737_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6\ urlLabel FANTOM5 Details:\ MelanomaCellLineCOLO679_CNhs11281_tpm_fwd Cl:COLO679+ bigWig 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http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoblastoma%20cell%20line%3aG-402.CNhs11848.10721-110A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel leiomyoblastoma cell line:G-402_CNhs11848_10721-110A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10721-110A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:G-402+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LeiomyoblastomaCellLineG402_CNhs11848_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1\ urlLabel FANTOM5 Details:\ LeiomyoblastomaCellLineG402_CNhs11848_ctss_fwd Cl:G-402+ bigWig leiomyoblastoma cell line:G-402_CNhs11848_10721-110A1_forward 0 1429 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoblastoma%20cell%20line%3aG-402.CNhs11848.10721-110A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel leiomyoblastoma cell 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track LeiomyoblastomaCellLineG402_CNhs11848_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1\ urlLabel FANTOM5 Details:\ LeiomyoblastomaCellLineG402_CNhs11848_ctss_rev Cl:G-402- bigWig leiomyoblastoma cell line:G-402_CNhs11848_10721-110A1_reverse 0 1430 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoblastoma%20cell%20line%3aG-402.CNhs11848.10721-110A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel leiomyoblastoma cell line:G-402_CNhs11848_10721-110A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10721-110A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:G-402-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LeiomyoblastomaCellLineG402_CNhs11848_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1\ urlLabel FANTOM5 Details:\ FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_tpm_fwd Cl:GCTTIB-223+ bigWig fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_forward 1 1431 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/fibrous%20histiocytoma%20cell%20line%3aGCT%20TIB-223.CNhs11842.10711-109H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10711-109H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GCTTIB-223+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9\ urlLabel FANTOM5 Details:\ FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_ctss_fwd Cl:GCTTIB-223+ bigWig fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_forward 0 1431 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/fibrous%20histiocytoma%20cell%20line%3aGCT%20TIB-223.CNhs11842.10711-109H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10711-109H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GCTTIB-223+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9\ urlLabel FANTOM5 Details:\ FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_tpm_rev Cl:GCTTIB-223- bigWig fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_reverse 1 1432 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/fibrous%20histiocytoma%20cell%20line%3aGCT%20TIB-223.CNhs11842.10711-109H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10711-109H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GCTTIB-223-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9\ urlLabel FANTOM5 Details:\ FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_ctss_rev Cl:GCTTIB-223- bigWig fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_reverse 0 1432 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/fibrous%20histiocytoma%20cell%20line%3aGCT%20TIB-223.CNhs11842.10711-109H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10711-109H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GCTTIB-223-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9\ urlLabel FANTOM5 Details:\ GliomaCellLineGI1_CNhs10731_tpm_fwd Cl:GI-1+ bigWig glioma cell line:GI-1_CNhs10731_10413-106B8_forward 1 1433 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/glioma%20cell%20line%3aGI-1.CNhs10731.10413-106B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel glioma cell line:GI-1_CNhs10731_10413-106B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10413-106B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GI-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GliomaCellLineGI1_CNhs10731_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8\ urlLabel FANTOM5 Details:\ GliomaCellLineGI1_CNhs10731_ctss_fwd Cl:GI-1+ bigWig glioma cell line:GI-1_CNhs10731_10413-106B8_forward 0 1433 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/glioma%20cell%20line%3aGI-1.CNhs10731.10413-106B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel glioma cell line:GI-1_CNhs10731_10413-106B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10413-106B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GI-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GliomaCellLineGI1_CNhs10731_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8\ urlLabel FANTOM5 Details:\ GliomaCellLineGI1_CNhs10731_tpm_rev Cl:GI-1- bigWig glioma cell line:GI-1_CNhs10731_10413-106B8_reverse 1 1434 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/glioma%20cell%20line%3aGI-1.CNhs10731.10413-106B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel glioma cell line:GI-1_CNhs10731_10413-106B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10413-106B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GI-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GliomaCellLineGI1_CNhs10731_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8\ urlLabel FANTOM5 Details:\ GliomaCellLineGI1_CNhs10731_ctss_rev Cl:GI-1- bigWig glioma cell line:GI-1_CNhs10731_10413-106B8_reverse 0 1434 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/glioma%20cell%20line%3aGI-1.CNhs10731.10413-106B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel glioma cell line:GI-1_CNhs10731_10413-106B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10413-106B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GI-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GliomaCellLineGI1_CNhs10731_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep1_CNhs12331_tpm_fwd Cl:GM12878Br1+ bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep1_CNhs12331_10821-111C2_forward 1 1435 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10821-111C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep1.CNhs12331.10821-111C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep1_CNhs12331_10821-111C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10821-111C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GM12878Br1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep1_CNhs12331_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10821-111C2\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep1_CNhs12331_ctss_fwd Cl:GM12878Br1+ bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep1_CNhs12331_10821-111C2_forward 0 1435 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10821-111C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep1.CNhs12331.10821-111C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep1_CNhs12331_10821-111C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10821-111C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GM12878Br1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep1_CNhs12331_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10821-111C2\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep1_CNhs12331_tpm_rev Cl:GM12878Br1- bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep1_CNhs12331_10821-111C2_reverse 1 1436 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10821-111C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep1.CNhs12331.10821-111C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep1_CNhs12331_10821-111C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10821-111C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GM12878Br1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep1_CNhs12331_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10821-111C2\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep1_CNhs12331_ctss_rev Cl:GM12878Br1- bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep1_CNhs12331_10821-111C2_reverse 0 1436 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10821-111C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep1.CNhs12331.10821-111C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep1_CNhs12331_10821-111C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10821-111C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GM12878Br1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep1_CNhs12331_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10821-111C2\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_tpm_fwd Cl:GM12878Br2+ bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_forward 1 1437 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep2.CNhs12332.10822-111C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10822-111C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GM12878Br2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_ctss_fwd Cl:GM12878Br2+ bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_forward 0 1437 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep2.CNhs12332.10822-111C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10822-111C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GM12878Br2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_tpm_rev Cl:GM12878Br2- bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_reverse 1 1438 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep2.CNhs12332.10822-111C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10822-111C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GM12878Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_ctss_rev Cl:GM12878Br2- bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_reverse 0 1438 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep2.CNhs12332.10822-111C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10822-111C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GM12878Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_tpm_fwd Cl:GM12878Br3+ bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_forward 1 1439 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep3.CNhs12333.10823-111C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10823-111C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GM12878Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_ctss_fwd Cl:GM12878Br3+ bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_forward 0 1439 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep3.CNhs12333.10823-111C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10823-111C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GM12878Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_tpm_rev Cl:GM12878Br3- bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_reverse 1 1440 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep3.CNhs12333.10823-111C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10823-111C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GM12878Br3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_ctss_rev Cl:GM12878Br3- bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_reverse 0 1440 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep3.CNhs12333.10823-111C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10823-111C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GM12878Br3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4\ urlLabel FANTOM5 Details:\ GastricCancerCellLineGSS_CNhs14241_tpm_fwd Cl:GSS+ bigWig gastric cancer cell line:GSS_CNhs14241_10560-108A2_forward 1 1441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10560-108A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastric%20cancer%20cell%20line%3aGSS.CNhs14241.10560-108A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel gastric cancer cell line:GSS_CNhs14241_10560-108A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10560-108A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GSS+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GastricCancerCellLineGSS_CNhs14241_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10560-108A2\ urlLabel FANTOM5 Details:\ GastricCancerCellLineGSS_CNhs14241_ctss_fwd Cl:GSS+ bigWig gastric cancer cell line:GSS_CNhs14241_10560-108A2_forward 0 1441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10560-108A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastric%20cancer%20cell%20line%3aGSS.CNhs14241.10560-108A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel gastric cancer cell line:GSS_CNhs14241_10560-108A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10560-108A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GSS+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GastricCancerCellLineGSS_CNhs14241_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10560-108A2\ urlLabel FANTOM5 Details:\ GastricCancerCellLineGSS_CNhs14241_tpm_rev Cl:GSS- bigWig gastric cancer cell line:GSS_CNhs14241_10560-108A2_reverse 1 1442 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10560-108A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastric%20cancer%20cell%20line%3aGSS.CNhs14241.10560-108A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel gastric cancer cell line:GSS_CNhs14241_10560-108A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10560-108A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GSS-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GastricCancerCellLineGSS_CNhs14241_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10560-108A2\ urlLabel FANTOM5 Details:\ GastricCancerCellLineGSS_CNhs14241_ctss_rev Cl:GSS- bigWig gastric cancer cell line:GSS_CNhs14241_10560-108A2_reverse 0 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/gbdb/hg38/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep2.CNhs12326.10816-111B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2_CNhs12326_10816-111B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10816-111B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HelaS3Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep2_CNhs12326_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10816-111B6\ urlLabel FANTOM5 Details:\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep2_CNhs12326_ctss_rev Cl:HelaS3Br2- bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2_CNhs12326_10816-111B6_reverse 0 1458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10816-111B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep2.CNhs12326.10816-111B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2_CNhs12326_10816-111B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10816-111B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HelaS3Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep2_CNhs12326_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10816-111B6\ urlLabel FANTOM5 Details:\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_tpm_fwd Cl:HelaS3Br3+ bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_forward 1 1459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep3.CNhs12327.10817-111B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10817-111B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HelaS3Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7\ urlLabel FANTOM5 Details:\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_ctss_fwd Cl:HelaS3Br3+ bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_forward 0 1459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep3.CNhs12327.10817-111B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10817-111B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HelaS3Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7\ urlLabel FANTOM5 Details:\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_tpm_rev Cl:HelaS3Br3- bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_reverse 1 1460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep3.CNhs12327.10817-111B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10817-111B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HelaS3Br3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7\ urlLabel FANTOM5 Details:\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_ctss_rev Cl:HelaS3Br3- bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_reverse 0 1460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep3.CNhs12327.10817-111B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10817-111B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HelaS3Br3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7\ urlLabel FANTOM5 Details:\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep1_CNhs12328_tpm_fwd Cl:HepG2Br1+ bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1_CNhs12328_10818-111B8_forward 1 1461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10818-111B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep1.CNhs12328.10818-111B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1_CNhs12328_10818-111B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10818-111B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HepG2Br1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep1_CNhs12328_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10818-111B8\ urlLabel FANTOM5 Details:\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep1_CNhs12328_ctss_fwd Cl:HepG2Br1+ bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1_CNhs12328_10818-111B8_forward 0 1461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10818-111B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep1.CNhs12328.10818-111B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1_CNhs12328_10818-111B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10818-111B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HepG2Br1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep1_CNhs12328_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10818-111B8\ urlLabel FANTOM5 Details:\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep1_CNhs12328_tpm_rev Cl:HepG2Br1- bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1_CNhs12328_10818-111B8_reverse 1 1462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10818-111B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep1.CNhs12328.10818-111B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1_CNhs12328_10818-111B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10818-111B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HepG2Br1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep1_CNhs12328_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10818-111B8\ urlLabel FANTOM5 Details:\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep1_CNhs12328_ctss_rev Cl:HepG2Br1- bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1_CNhs12328_10818-111B8_reverse 0 1462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10818-111B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep1.CNhs12328.10818-111B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1_CNhs12328_10818-111B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10818-111B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HepG2Br1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep1_CNhs12328_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10818-111B8\ urlLabel FANTOM5 Details:\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep2_CNhs12329_tpm_fwd Cl:HepG2Br2+ bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2_CNhs12329_10819-111B9_forward 1 1463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10819-111B9 regulation 0 bigDataUrl 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127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10694-109G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tridermal%20teratoma%20cell%20line%3aHGRT.CNhs11828.10694-109G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel tridermal teratoma cell line:HGRT_CNhs11828_10694-109G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10694-109G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HGRT-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TridermalTeratomaCellLineHGRT_CNhs11828_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10694-109G1\ urlLabel FANTOM5 Details:\ TridermalTeratomaCellLineHGRT_CNhs11828_ctss_rev Cl:HGRT- bigWig tridermal teratoma cell line:HGRT_CNhs11828_10694-109G1_reverse 0 1472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10694-109G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tridermal%20teratoma%20cell%20line%3aHGRT.CNhs11828.10694-109G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel tridermal 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SynovialSarcomaCellLineHSSYII_CNhs11244_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10441-106E9\ urlLabel FANTOM5 Details:\ SynovialSarcomaCellLineHSSYII_CNhs11244_tpm_rev Cl:HS-SY-II- bigWig synovial sarcoma cell line:HS-SY-II_CNhs11244_10441-106E9_reverse 1 1496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10441-106E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/synovial%20sarcoma%20cell%20line%3aHS-SY-II.CNhs11244.10441-106E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel synovial sarcoma cell line:HS-SY-II_CNhs11244_10441-106E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10441-106E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HS-SY-II-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SynovialSarcomaCellLineHSSYII_CNhs11244_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10441-106E9\ urlLabel FANTOM5 Details:\ SynovialSarcomaCellLineHSSYII_CNhs11244_ctss_rev Cl:HS-SY-II- bigWig synovial sarcoma cell line:HS-SY-II_CNhs11244_10441-106E9_reverse 0 1496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10441-106E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/synovial%20sarcoma%20cell%20line%3aHS-SY-II.CNhs11244.10441-106E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel synovial sarcoma cell line:HS-SY-II_CNhs11244_10441-106E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10441-106E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HS-SY-II-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SynovialSarcomaCellLineHSSYII_CNhs11244_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10441-106E9\ urlLabel FANTOM5 Details:\ SpindleCellSarcomaCellLineHs132_T_CNhs11857_tpm_fwd Cl:Hs132_T+ bigWig spindle cell sarcoma cell line:Hs 132_T_CNhs11857_10737-110B8_forward 1 1497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10737-110B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spindle%20cell%20sarcoma%20cell%20line%3aHs%20132%2eT.CNhs11857.10737-110B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel spindle cell sarcoma cell line:Hs 132_T_CNhs11857_10737-110B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10737-110B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs132_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SpindleCellSarcomaCellLineHs132_T_CNhs11857_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10737-110B8\ urlLabel FANTOM5 Details:\ SpindleCellSarcomaCellLineHs132_T_CNhs11857_ctss_fwd Cl:Hs132_T+ bigWig spindle cell sarcoma cell line:Hs 132_T_CNhs11857_10737-110B8_forward 0 1497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10737-110B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spindle%20cell%20sarcoma%20cell%20line%3aHs%20132%2eT.CNhs11857.10737-110B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel spindle cell sarcoma cell line:Hs 132_T_CNhs11857_10737-110B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10737-110B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs132_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SpindleCellSarcomaCellLineHs132_T_CNhs11857_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10737-110B8\ urlLabel FANTOM5 Details:\ SpindleCellSarcomaCellLineHs132_T_CNhs11857_tpm_rev Cl:Hs132_T- bigWig spindle cell sarcoma cell line:Hs 132_T_CNhs11857_10737-110B8_reverse 1 1498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10737-110B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spindle%20cell%20sarcoma%20cell%20line%3aHs%20132%2eT.CNhs11857.10737-110B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel spindle cell sarcoma cell line:Hs 132_T_CNhs11857_10737-110B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10737-110B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs132_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SpindleCellSarcomaCellLineHs132_T_CNhs11857_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10737-110B8\ urlLabel FANTOM5 Details:\ SpindleCellSarcomaCellLineHs132_T_CNhs11857_ctss_rev Cl:Hs132_T- bigWig spindle cell sarcoma cell line:Hs 132_T_CNhs11857_10737-110B8_reverse 0 1498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10737-110B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spindle%20cell%20sarcoma%20cell%20line%3aHs%20132%2eT.CNhs11857.10737-110B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel spindle cell sarcoma cell line:Hs 132_T_CNhs11857_10737-110B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10737-110B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs132_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SpindleCellSarcomaCellLineHs132_T_CNhs11857_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10737-110B8\ urlLabel FANTOM5 Details:\ NeurofibromaCellLineHs53_T_CNhs11854_tpm_fwd Cl:Hs53_T+ bigWig neurofibroma cell line:Hs 53_T_CNhs11854_10729-110A9_forward 1 1499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10729-110A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neurofibroma%20cell%20line%3aHs%2053%2eT.CNhs11854.10729-110A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel neurofibroma cell line:Hs 53_T_CNhs11854_10729-110A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10729-110A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs53_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeurofibromaCellLineHs53_T_CNhs11854_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10729-110A9\ urlLabel FANTOM5 Details:\ NeurofibromaCellLineHs53_T_CNhs11854_ctss_fwd Cl:Hs53_T+ bigWig neurofibroma cell line:Hs 53_T_CNhs11854_10729-110A9_forward 0 1499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10729-110A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neurofibroma%20cell%20line%3aHs%2053%2eT.CNhs11854.10729-110A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel neurofibroma cell line:Hs 53_T_CNhs11854_10729-110A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10729-110A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs53_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeurofibromaCellLineHs53_T_CNhs11854_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10729-110A9\ urlLabel FANTOM5 Details:\ NeurofibromaCellLineHs53_T_CNhs11854_tpm_rev Cl:Hs53_T- bigWig neurofibroma cell line:Hs 53_T_CNhs11854_10729-110A9_reverse 1 1500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10729-110A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neurofibroma%20cell%20line%3aHs%2053%2eT.CNhs11854.10729-110A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel neurofibroma cell line:Hs 53_T_CNhs11854_10729-110A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10729-110A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs53_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeurofibromaCellLineHs53_T_CNhs11854_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10729-110A9\ urlLabel FANTOM5 Details:\ NeurofibromaCellLineHs53_T_CNhs11854_ctss_rev Cl:Hs53_T- bigWig neurofibroma cell line:Hs 53_T_CNhs11854_10729-110A9_reverse 0 1500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10729-110A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neurofibroma%20cell%20line%3aHs%2053%2eT.CNhs11854.10729-110A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel neurofibroma cell line:Hs 53_T_CNhs11854_10729-110A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10729-110A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs53_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeurofibromaCellLineHs53_T_CNhs11854_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10729-110A9\ urlLabel FANTOM5 Details:\ OsteoclastomaCellLineHs706_T_CNhs11835_tpm_fwd Cl:Hs706_T+ bigWig osteoclastoma cell line:Hs 706_T_CNhs11835_10704-109H2_forward 1 1501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10704-109H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/osteoclastoma%20cell%20line%3aHs%20706%2eT.CNhs11835.10704-109H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel osteoclastoma cell line:Hs 706_T_CNhs11835_10704-109H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10704-109H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs706_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OsteoclastomaCellLineHs706_T_CNhs11835_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10704-109H2\ urlLabel FANTOM5 Details:\ OsteoclastomaCellLineHs706_T_CNhs11835_ctss_fwd Cl:Hs706_T+ bigWig osteoclastoma cell line:Hs 706_T_CNhs11835_10704-109H2_forward 0 1501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10704-109H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/osteoclastoma%20cell%20line%3aHs%20706%2eT.CNhs11835.10704-109H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel osteoclastoma cell line:Hs 706_T_CNhs11835_10704-109H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10704-109H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs706_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OsteoclastomaCellLineHs706_T_CNhs11835_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10704-109H2\ urlLabel FANTOM5 Details:\ OsteoclastomaCellLineHs706_T_CNhs11835_tpm_rev Cl:Hs706_T- bigWig osteoclastoma cell line:Hs 706_T_CNhs11835_10704-109H2_reverse 1 1502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10704-109H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/osteoclastoma%20cell%20line%3aHs%20706%2eT.CNhs11835.10704-109H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel osteoclastoma cell line:Hs 706_T_CNhs11835_10704-109H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10704-109H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs706_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OsteoclastomaCellLineHs706_T_CNhs11835_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10704-109H2\ urlLabel FANTOM5 Details:\ OsteoclastomaCellLineHs706_T_CNhs11835_ctss_rev Cl:Hs706_T- bigWig osteoclastoma cell line:Hs 706_T_CNhs11835_10704-109H2_reverse 0 1502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10704-109H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/osteoclastoma%20cell%20line%3aHs%20706%2eT.CNhs11835.10704-109H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel osteoclastoma cell line:Hs 706_T_CNhs11835_10704-109H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10704-109H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs706_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OsteoclastomaCellLineHs706_T_CNhs11835_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10704-109H2\ urlLabel FANTOM5 Details:\ TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_tpm_fwd Cl:Hs769_T+ bigWig transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_forward 1 1503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/transitional%20cell%20carcinoma%20cell%20line%3aHs%20769%2eT.CNhs11837.10707-109H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10707-109H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs769_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5\ urlLabel FANTOM5 Details:\ TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_ctss_fwd Cl:Hs769_T+ bigWig transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_forward 0 1503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/transitional%20cell%20carcinoma%20cell%20line%3aHs%20769%2eT.CNhs11837.10707-109H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10707-109H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs769_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5\ urlLabel FANTOM5 Details:\ TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_tpm_rev Cl:Hs769_T- bigWig transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_reverse 1 1504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/transitional%20cell%20carcinoma%20cell%20line%3aHs%20769%2eT.CNhs11837.10707-109H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10707-109H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs769_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5\ urlLabel FANTOM5 Details:\ TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_ctss_rev Cl:Hs769_T- bigWig transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_reverse 0 1504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/transitional%20cell%20carcinoma%20cell%20line%3aHs%20769%2eT.CNhs11837.10707-109H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10707-109H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs769_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5\ urlLabel FANTOM5 Details:\ EwingsSarcomaCellLineHs863_T_CNhs11836_tpm_fwd Cl:Hs863_T+ bigWig Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_forward 1 1505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ewing%27s%20sarcoma%20cell%20line%3aHs%20863%2eT.CNhs11836.10705-109H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10705-109H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs863_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EwingsSarcomaCellLineHs863_T_CNhs11836_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3\ urlLabel FANTOM5 Details:\ EwingsSarcomaCellLineHs863_T_CNhs11836_ctss_fwd Cl:Hs863_T+ bigWig Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_forward 0 1505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ewing%27s%20sarcoma%20cell%20line%3aHs%20863%2eT.CNhs11836.10705-109H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10705-109H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs863_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EwingsSarcomaCellLineHs863_T_CNhs11836_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3\ urlLabel FANTOM5 Details:\ EwingsSarcomaCellLineHs863_T_CNhs11836_tpm_rev Cl:Hs863_T- bigWig Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_reverse 1 1506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ewing%27s%20sarcoma%20cell%20line%3aHs%20863%2eT.CNhs11836.10705-109H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10705-109H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs863_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EwingsSarcomaCellLineHs863_T_CNhs11836_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3\ urlLabel FANTOM5 Details:\ EwingsSarcomaCellLineHs863_T_CNhs11836_ctss_rev Cl:Hs863_T- bigWig Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_reverse 0 1506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ewing%27s%20sarcoma%20cell%20line%3aHs%20863%2eT.CNhs11836.10705-109H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10705-109H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs863_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EwingsSarcomaCellLineHs863_T_CNhs11836_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3\ urlLabel FANTOM5 Details:\ PagetoidSarcomaCellLineHs925_T_CNhs11856_tpm_fwd Cl:Hs925_T+ bigWig pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_forward 1 1507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pagetoid%20sarcoma%20cell%20line%3aHs%20925%2eT.CNhs11856.10732-110B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10732-110B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs925_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PagetoidSarcomaCellLineHs925_T_CNhs11856_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3\ urlLabel FANTOM5 Details:\ PagetoidSarcomaCellLineHs925_T_CNhs11856_ctss_fwd Cl:Hs925_T+ bigWig pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_forward 0 1507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3 regulation 0 bigDataUrl 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maxHeightPixels 100:8:8\ metadata ontology_id=10732-110B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs925_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PagetoidSarcomaCellLineHs925_T_CNhs11856_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3\ urlLabel FANTOM5 Details:\ PagetoidSarcomaCellLineHs925_T_CNhs11856_ctss_rev Cl:Hs925_T- bigWig pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_reverse 0 1508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pagetoid%20sarcoma%20cell%20line%3aHs%20925%2eT.CNhs11856.10732-110B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10732-110B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs925_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PagetoidSarcomaCellLineHs925_T_CNhs11856_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3\ urlLabel FANTOM5 Details:\ OralSquamousCellCarcinomaCellLineHSC3_CNhs11717_tpm_fwd Cl:HSC-3+ bigWig oral squamous cell carcinoma cell line:HSC-3_CNhs11717_10545-107H5_forward 1 1509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10545-107H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aHSC-3.CNhs11717.10545-107H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel oral squamous cell carcinoma cell line:HSC-3_CNhs11717_10545-107H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10545-107H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HSC-3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OralSquamousCellCarcinomaCellLineHSC3_CNhs11717_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10545-107H5\ urlLabel FANTOM5 Details:\ 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maxHeightPixels 100:8:8\ metadata ontology_id=10687-109F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HSKTC+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track KrukenbergTumorCellLineHSKTC_CNhs11822_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10687-109F3\ urlLabel FANTOM5 Details:\ KrukenbergTumorCellLineHSKTC_CNhs11822_ctss_fwd Cl:HSKTC+ bigWig Krukenberg tumor cell line:HSKTC_CNhs11822_10687-109F3_forward 0 1511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10687-109F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Krukenberg%20tumor%20cell%20line%3aHSKTC.CNhs11822.10687-109F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Krukenberg tumor cell line:HSKTC_CNhs11822_10687-109F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10687-109F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HSKTC+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track KrukenbergTumorCellLineHSKTC_CNhs11822_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10687-109F3\ urlLabel FANTOM5 Details:\ KrukenbergTumorCellLineHSKTC_CNhs11822_tpm_rev Cl:HSKTC- bigWig Krukenberg tumor cell line:HSKTC_CNhs11822_10687-109F3_reverse 1 1512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10687-109F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Krukenberg%20tumor%20cell%20line%3aHSKTC.CNhs11822.10687-109F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Krukenberg tumor cell line:HSKTC_CNhs11822_10687-109F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10687-109F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HSKTC-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track KrukenbergTumorCellLineHSKTC_CNhs11822_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10687-109F3\ urlLabel FANTOM5 Details:\ KrukenbergTumorCellLineHSKTC_CNhs11822_ctss_rev Cl:HSKTC- bigWig Krukenberg tumor cell line:HSKTC_CNhs11822_10687-109F3_reverse 0 1512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10687-109F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Krukenberg%20tumor%20cell%20line%3aHSKTC.CNhs11822.10687-109F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Krukenberg tumor cell line:HSKTC_CNhs11822_10687-109F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10687-109F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HSKTC-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track KrukenbergTumorCellLineHSKTC_CNhs11822_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10687-109F3\ urlLabel FANTOM5 Details:\ MaxillarySinusTumorCellLineHSQ89_CNhs10732_tpm_fwd Cl:HSQ-89+ bigWig maxillary sinus tumor cell line:HSQ-89_CNhs10732_10414-106B9_forward 1 1513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10414-106B9 regulation 0 bigDataUrl 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maxHeightPixels 100:8:8\ metadata ontology_id=10414-106B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HSQ-89+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MaxillarySinusTumorCellLineHSQ89_CNhs10732_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10414-106B9\ urlLabel FANTOM5 Details:\ MaxillarySinusTumorCellLineHSQ89_CNhs10732_tpm_rev Cl:HSQ-89- bigWig maxillary sinus tumor cell line:HSQ-89_CNhs10732_10414-106B9_reverse 1 1514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10414-106B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/maxillary%20sinus%20tumor%20cell%20line%3aHSQ-89.CNhs10732.10414-106B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel maxillary sinus tumor cell line:HSQ-89_CNhs10732_10414-106B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10414-106B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HSQ-89-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MaxillarySinusTumorCellLineHSQ89_CNhs10732_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10414-106B9\ urlLabel FANTOM5 Details:\ MaxillarySinusTumorCellLineHSQ89_CNhs10732_ctss_rev Cl:HSQ-89- bigWig maxillary sinus tumor cell line:HSQ-89_CNhs10732_10414-106B9_reverse 0 1514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10414-106B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/maxillary%20sinus%20tumor%20cell%20line%3aHSQ-89.CNhs10732.10414-106B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel maxillary sinus tumor cell line:HSQ-89_CNhs10732_10414-106B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10414-106B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HSQ-89-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MaxillarySinusTumorCellLineHSQ89_CNhs10732_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10414-106B9\ urlLabel FANTOM5 Details:\ FibrosarcomaCellLineHT1080_CNhs11860_tpm_fwd Cl:HT-1080+ bigWig fibrosarcoma cell line:HT-1080_CNhs11860_10758-110E2_forward 1 1515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10758-110E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/fibrosarcoma%20cell%20line%3aHT-1080.CNhs11860.10758-110E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel fibrosarcoma cell line:HT-1080_CNhs11860_10758-110E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10758-110E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HT-1080+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track FibrosarcomaCellLineHT1080_CNhs11860_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10758-110E2\ urlLabel FANTOM5 Details:\ FibrosarcomaCellLineHT1080_CNhs11860_ctss_fwd Cl:HT-1080+ bigWig fibrosarcoma cell line:HT-1080_CNhs11860_10758-110E2_forward 0 1515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10758-110E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/fibrosarcoma%20cell%20line%3aHT-1080.CNhs11860.10758-110E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel fibrosarcoma cell line:HT-1080_CNhs11860_10758-110E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10758-110E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HT-1080+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track FibrosarcomaCellLineHT1080_CNhs11860_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10758-110E2\ urlLabel FANTOM5 Details:\ FibrosarcomaCellLineHT1080_CNhs11860_tpm_rev Cl:HT-1080- bigWig fibrosarcoma cell line:HT-1080_CNhs11860_10758-110E2_reverse 1 1516 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10758-110E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/fibrosarcoma%20cell%20line%3aHT-1080.CNhs11860.10758-110E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel fibrosarcoma cell line:HT-1080_CNhs11860_10758-110E2_reverse\ maxHeightPixels 100:8:8\ metadata 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/gbdb/hg38/fantom5/chronic%20myeloblastic%20leukemia%20%28CML%29%20cell%20line%3aKCL-22.CNhs11886.10801-110I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel chronic myeloblastic leukemia (CML) cell line:KCL-22_CNhs11886_10801-110I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10801-110I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KCL-22-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChronicMyeloblasticLeukemiaCMLCellLineKCL22_CNhs11886_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10801-110I9\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM0CellLineKG1_CNhs13053_tpm_fwd Cl:KG-1+ bigWig acute myeloid leukemia (FAB M0) cell line:KG-1_CNhs13053_10827-111C8_forward 1 1573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10827-111C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M0%29%20cell%20line%3aKG-1.CNhs13053.10827-111C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M0) cell line:KG-1_CNhs13053_10827-111C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10827-111C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KG-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM0CellLineKG1_CNhs13053_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10827-111C8\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM0CellLineKG1_CNhs13053_ctss_fwd Cl:KG-1+ bigWig acute myeloid leukemia (FAB M0) cell line:KG-1_CNhs13053_10827-111C8_forward 0 1573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10827-111C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M0%29%20cell%20line%3aKG-1.CNhs13053.10827-111C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M0) cell line:KG-1_CNhs13053_10827-111C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10827-111C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KG-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM0CellLineKG1_CNhs13053_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10827-111C8\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM0CellLineKG1_CNhs13053_tpm_rev Cl:KG-1- bigWig acute myeloid leukemia (FAB M0) cell line:KG-1_CNhs13053_10827-111C8_reverse 1 1574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10827-111C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M0%29%20cell%20line%3aKG-1.CNhs13053.10827-111C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M0) cell line:KG-1_CNhs13053_10827-111C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10827-111C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KG-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track 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GranulosaCellTumorCellLineKGN_CNhs11740_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10624-108H3\ urlLabel FANTOM5 Details:\ ThyroidCarcinomaCellLineKHM5M_CNhs14140_tpm_fwd Cl:KHM-5M+ bigWig thyroid carcinoma cell line:KHM-5M_CNhs14140_10776-110G2_forward 1 1577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10776-110G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%20carcinoma%20cell%20line%3aKHM-5M.CNhs14140.10776-110G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thyroid carcinoma cell line:KHM-5M_CNhs14140_10776-110G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10776-110G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KHM-5M+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ThyroidCarcinomaCellLineKHM5M_CNhs14140_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10776-110G2\ urlLabel FANTOM5 Details:\ ThyroidCarcinomaCellLineKHM5M_CNhs14140_ctss_fwd Cl:KHM-5M+ bigWig thyroid carcinoma cell line:KHM-5M_CNhs14140_10776-110G2_forward 0 1577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10776-110G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%20carcinoma%20cell%20line%3aKHM-5M.CNhs14140.10776-110G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thyroid carcinoma cell line:KHM-5M_CNhs14140_10776-110G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10776-110G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KHM-5M+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ThyroidCarcinomaCellLineKHM5M_CNhs14140_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10776-110G2\ urlLabel FANTOM5 Details:\ ThyroidCarcinomaCellLineKHM5M_CNhs14140_tpm_rev Cl:KHM-5M- bigWig thyroid carcinoma cell line:KHM-5M_CNhs14140_10776-110G2_reverse 1 1578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10776-110G2 regulation 0 bigDataUrl 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NKTCellLeukemiaCellLineKHYG1_CNhs11867_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10777-110G3\ urlLabel FANTOM5 Details:\ NKTCellLeukemiaCellLineKHYG1_CNhs11867_ctss_fwd Cl:KHYG-1+ bigWig NK T cell leukemia cell line:KHYG-1_CNhs11867_10777-110G3_forward 0 1579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10777-110G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/NK%20T%20cell%20leukemia%20cell%20line%3aKHYG-1.CNhs11867.10777-110G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel NK T cell leukemia cell line:KHYG-1_CNhs11867_10777-110G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10777-110G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KHYG-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NKTCellLeukemiaCellLineKHYG1_CNhs11867_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10777-110G3\ urlLabel FANTOM5 Details:\ NKTCellLeukemiaCellLineKHYG1_CNhs11867_tpm_rev Cl:KHYG-1- bigWig NK T cell leukemia cell line:KHYG-1_CNhs11867_10777-110G3_reverse 1 1580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10777-110G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/NK%20T%20cell%20leukemia%20cell%20line%3aKHYG-1.CNhs11867.10777-110G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel NK T cell leukemia cell line:KHYG-1_CNhs11867_10777-110G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10777-110G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KHYG-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NKTCellLeukemiaCellLineKHYG1_CNhs11867_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10777-110G3\ urlLabel FANTOM5 Details:\ NKTCellLeukemiaCellLineKHYG1_CNhs11867_ctss_rev Cl:KHYG-1- bigWig NK T cell leukemia cell line:KHYG-1_CNhs11867_10777-110G3_reverse 0 1580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10777-110G3 regulation 0 bigDataUrl 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PeripheralNeuroectodermalTumorCellLineKUSN_CNhs11830_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10697-109G4\ urlLabel FANTOM5 Details:\ ChronicMyelogenousLeukemiaCellLineKU812_CNhs10727_tpm_fwd Cl:KU812+ bigWig chronic myelogenous leukemia cell line:KU812_CNhs10727_10409-106B4_forward 1 1591 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10409-106B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aKU812.CNhs10727.10409-106B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel chronic myelogenous leukemia cell line:KU812_CNhs10727_10409-106B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10409-106B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KU812+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChronicMyelogenousLeukemiaCellLineKU812_CNhs10727_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10409-106B4\ urlLabel FANTOM5 Details:\ 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127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10409-106B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aKU812.CNhs10727.10409-106B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel chronic myelogenous leukemia cell line:KU812_CNhs10727_10409-106B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10409-106B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KU812-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChronicMyelogenousLeukemiaCellLineKU812_CNhs10727_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10409-106B4\ urlLabel FANTOM5 Details:\ ChronicMyelogenousLeukemiaCellLineKU812_CNhs10727_ctss_rev Cl:KU812- bigWig chronic myelogenous leukemia cell line:KU812_CNhs10727_10409-106B4_reverse 0 1592 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10409-106B4 regulation 0 bigDataUrl 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/gbdb/hg38/fantom5/lymphoma%2c%20malignant%2c%20hairy%20B-cell%20cell%20line%3aMLMA.CNhs11935.10775-110G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10775-110G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MLMA+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1\ urlLabel FANTOM5 Details:\ LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_tpm_rev Cl:MLMA- bigWig lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_reverse 1 1650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lymphoma%2c%20malignant%2c%20hairy%20B-cell%20cell%20line%3aMLMA.CNhs11935.10775-110G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10775-110G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MLMA-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1\ urlLabel FANTOM5 Details:\ LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_ctss_rev Cl:MLMA- bigWig lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_reverse 0 1650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lymphoma%2c%20malignant%2c%20hairy%20B-cell%20cell%20line%3aMLMA.CNhs11935.10775-110G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10775-110G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MLMA-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1\ urlLabel FANTOM5 Details:\ HairyCellLeukemiaCellLineMo_CNhs11843_tpm_fwd Cl:Mo+ bigWig hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_forward 1 1651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hairy%20cell%20leukemia%20cell%20line%3aMo.CNhs11843.10712-109I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10712-109I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mo+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HairyCellLeukemiaCellLineMo_CNhs11843_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1\ urlLabel FANTOM5 Details:\ HairyCellLeukemiaCellLineMo_CNhs11843_ctss_fwd Cl:Mo+ bigWig hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_forward 0 1651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hairy%20cell%20leukemia%20cell%20line%3aMo.CNhs11843.10712-109I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10712-109I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mo+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HairyCellLeukemiaCellLineMo_CNhs11843_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1\ urlLabel FANTOM5 Details:\ HairyCellLeukemiaCellLineMo_CNhs11843_tpm_rev Cl:Mo- bigWig hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_reverse 1 1652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hairy%20cell%20leukemia%20cell%20line%3aMo.CNhs11843.10712-109I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10712-109I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mo-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HairyCellLeukemiaCellLineMo_CNhs11843_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1\ urlLabel FANTOM5 Details:\ HairyCellLeukemiaCellLineMo_CNhs11843_ctss_rev Cl:Mo- bigWig hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_reverse 0 1652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hairy%20cell%20leukemia%20cell%20line%3aMo.CNhs11843.10712-109I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hairy cell leukemia cell 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strand=forward\ track MerkelCellCarcinomaCellLineMS1_CNhs12839_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10844-111E7\ urlLabel FANTOM5 Details:\ MerkelCellCarcinomaCellLineMS1_CNhs12839_ctss_fwd Cl:MS-1+ bigWig merkel cell carcinoma cell line:MS-1_CNhs12839_10844-111E7_forward 0 1653 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10844-111E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/merkel%20cell%20carcinoma%20cell%20line%3aMS-1.CNhs12839.10844-111E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel merkel cell carcinoma cell line:MS-1_CNhs12839_10844-111E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10844-111E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MS-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MerkelCellCarcinomaCellLineMS1_CNhs12839_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10844-111E7\ urlLabel FANTOM5 Details:\ MerkelCellCarcinomaCellLineMS1_CNhs12839_tpm_rev Cl:MS-1- bigWig merkel cell carcinoma cell line:MS-1_CNhs12839_10844-111E7_reverse 1 1654 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10844-111E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/merkel%20cell%20carcinoma%20cell%20line%3aMS-1.CNhs12839.10844-111E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel merkel cell carcinoma cell line:MS-1_CNhs12839_10844-111E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10844-111E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MS-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MerkelCellCarcinomaCellLineMS1_CNhs12839_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10844-111E7\ urlLabel FANTOM5 Details:\ MerkelCellCarcinomaCellLineMS1_CNhs12839_ctss_rev Cl:MS-1- bigWig merkel cell carcinoma cell line:MS-1_CNhs12839_10844-111E7_reverse 0 1654 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10844-111E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/merkel%20cell%20carcinoma%20cell%20line%3aMS-1.CNhs12839.10844-111E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel merkel cell carcinoma cell line:MS-1_CNhs12839_10844-111E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10844-111E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MS-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MerkelCellCarcinomaCellLineMS1_CNhs12839_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10844-111E7\ urlLabel FANTOM5 Details:\ BiphenotypicBMyelomonocyticLeukemiaCellLineMV411_CNhs11845_tpm_fwd Cl:MV-4-11+ bigWig biphenotypic B myelomonocytic leukemia cell line:MV-4-11_CNhs11845_10718-109I7_forward 1 1655 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10718-109I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/biphenotypic%20B%20myelomonocytic%20leukemia%20cell%20line%3aMV-4-11.CNhs11845.10718-109I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel biphenotypic B myelomonocytic leukemia cell line:MV-4-11_CNhs11845_10718-109I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10718-109I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MV-4-11+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BiphenotypicBMyelomonocyticLeukemiaCellLineMV411_CNhs11845_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10718-109I7\ urlLabel FANTOM5 Details:\ BiphenotypicBMyelomonocyticLeukemiaCellLineMV411_CNhs11845_ctss_fwd Cl:MV-4-11+ bigWig biphenotypic B myelomonocytic leukemia cell line:MV-4-11_CNhs11845_10718-109I7_forward 0 1655 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10718-109I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/biphenotypic%20B%20myelomonocytic%20leukemia%20cell%20line%3aMV-4-11.CNhs11845.10718-109I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel biphenotypic B myelomonocytic leukemia cell line:MV-4-11_CNhs11845_10718-109I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10718-109I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MV-4-11+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BiphenotypicBMyelomonocyticLeukemiaCellLineMV411_CNhs11845_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10718-109I7\ urlLabel FANTOM5 Details:\ BiphenotypicBMyelomonocyticLeukemiaCellLineMV411_CNhs11845_tpm_rev Cl:MV-4-11- bigWig biphenotypic B myelomonocytic leukemia cell line:MV-4-11_CNhs11845_10718-109I7_reverse 1 1656 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10718-109I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/biphenotypic%20B%20myelomonocytic%20leukemia%20cell%20line%3aMV-4-11.CNhs11845.10718-109I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel biphenotypic B myelomonocytic leukemia cell line:MV-4-11_CNhs11845_10718-109I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10718-109I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel 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BiphenotypicBMyelomonocyticLeukemiaCellLineMV411_CNhs11845_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10718-109I7\ urlLabel FANTOM5 Details:\ AcuteLymphoblasticLeukemiaBALLCellLineNALM6_CNhs11282_tpm_fwd Cl:NALM-6+ bigWig acute lymphoblastic leukemia (B-ALL) cell line:NALM-6_CNhs11282_10534-107G3_forward 1 1657 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10534-107G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20lymphoblastic%20leukemia%20%28B-ALL%29%20cell%20line%3aNALM-6.CNhs11282.10534-107G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute lymphoblastic leukemia (B-ALL) cell line:NALM-6_CNhs11282_10534-107G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10534-107G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NALM-6+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteLymphoblasticLeukemiaBALLCellLineNALM6_CNhs11282_tpm_fwd\ type bigWig\ url 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AcuteLymphoblasticLeukemiaBALLCellLineNALM6_CNhs11282_tpm_rev Cl:NALM-6- bigWig acute lymphoblastic leukemia (B-ALL) cell line:NALM-6_CNhs11282_10534-107G3_reverse 1 1658 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10534-107G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20lymphoblastic%20leukemia%20%28B-ALL%29%20cell%20line%3aNALM-6.CNhs11282.10534-107G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute lymphoblastic leukemia (B-ALL) cell line:NALM-6_CNhs11282_10534-107G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10534-107G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NALM-6-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteLymphoblasticLeukemiaBALLCellLineNALM6_CNhs11282_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10534-107G3\ urlLabel FANTOM5 Details:\ AcuteLymphoblasticLeukemiaBALLCellLineNALM6_CNhs11282_ctss_rev Cl:NALM-6- bigWig acute lymphoblastic leukemia (B-ALL) cell 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/gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor0%20%28nuclear%20fraction%29.CNhs12402.14314-155D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Aortic, donor0 (nuclear fraction)_CNhs12402_14314-155D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14314-155D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAorticCytofracD0-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track SmoothMuscleCellsAorticDonor0NuclearFraction_CNhs12402_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14314-155D3\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAorticDonor0NuclearFraction_CNhs12402_ctss_rev SmcAorticCytofracD0- bigWig Smooth Muscle Cells - Aortic, donor0 (nuclear fraction)_CNhs12402_14314-155D3_reverse 0 1886 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14314-155D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor0%20%28nuclear%20fraction%29.CNhs12402.14314-155D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Aortic, donor0 (nuclear fraction)_CNhs12402_14314-155D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14314-155D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAorticCytofracD0-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track SmoothMuscleCellsAorticDonor0NuclearFraction_CNhs12402_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14314-155D3\ urlLabel FANTOM5 Details:\ BasophilsDonor1_CNhs12546_tpm_fwd BasophilsD1+ bigWig Basophils, donor1_CNhs12546_12241-129G9_forward 1 1887 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12241-129G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor1.CNhs12546.12241-129G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Basophils, donor1_CNhs12546_12241-129G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12241-129G9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel BasophilsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track BasophilsDonor1_CNhs12546_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12241-129G9\ urlLabel FANTOM5 Details:\ BasophilsDonor1_CNhs12546_ctss_fwd BasophilsD1+ bigWig Basophils, donor1_CNhs12546_12241-129G9_forward 0 1887 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12241-129G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor1.CNhs12546.12241-129G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Basophils, donor1_CNhs12546_12241-129G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12241-129G9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel BasophilsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track BasophilsDonor1_CNhs12546_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12241-129G9\ urlLabel FANTOM5 Details:\ BasophilsDonor1_CNhs12546_tpm_rev BasophilsD1- bigWig Basophils, donor1_CNhs12546_12241-129G9_reverse 1 1888 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12241-129G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor1.CNhs12546.12241-129G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Basophils, donor1_CNhs12546_12241-129G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12241-129G9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel BasophilsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track BasophilsDonor1_CNhs12546_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12241-129G9\ urlLabel FANTOM5 Details:\ BasophilsDonor1_CNhs12546_ctss_rev BasophilsD1- bigWig Basophils, donor1_CNhs12546_12241-129G9_reverse 0 1888 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12241-129G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor1.CNhs12546.12241-129G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Basophils, donor1_CNhs12546_12241-129G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12241-129G9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel BasophilsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track BasophilsDonor1_CNhs12546_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12241-129G9\ urlLabel FANTOM5 Details:\ BasophilsDonor2_CNhs12563_tpm_fwd BasophilsD2+ bigWig Basophils, donor2_CNhs12563_12242-129H1_forward 1 1889 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12242-129H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor2.CNhs12563.12242-129H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Basophils, donor2_CNhs12563_12242-129H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12242-129H1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel BasophilsD2+\ 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donor2_CNhs12563_12242-129H1_reverse 1 1890 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12242-129H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor2.CNhs12563.12242-129H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Basophils, donor2_CNhs12563_12242-129H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12242-129H1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel BasophilsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track BasophilsDonor2_CNhs12563_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12242-129H1\ urlLabel FANTOM5 Details:\ BasophilsDonor2_CNhs12563_ctss_rev BasophilsD2- bigWig Basophils, donor2_CNhs12563_12242-129H1_reverse 0 1890 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12242-129H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor2.CNhs12563.12242-129H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Basophils, donor2_CNhs12563_12242-129H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12242-129H1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel BasophilsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track BasophilsDonor2_CNhs12563_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12242-129H1\ urlLabel FANTOM5 Details:\ CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_tpm_fwd Cd133+StemCellsAdultBoneMarrowPl1+ bigWig CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_forward 1 1891 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD133%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20pool1.CNhs12552.12224-129F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12224-129F1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd133+StemCellsAdultBoneMarrowPl1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1\ urlLabel FANTOM5 Details:\ CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_ctss_fwd Cd133+StemCellsAdultBoneMarrowPl1+ bigWig CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_forward 0 1891 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD133%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20pool1.CNhs12552.12224-129F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12224-129F1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd133+StemCellsAdultBoneMarrowPl1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1\ urlLabel FANTOM5 Details:\ CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_tpm_rev Cd133+StemCellsAdultBoneMarrowPl1- bigWig CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_reverse 1 1892 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD133%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20pool1.CNhs12552.12224-129F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12224-129F1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd133+StemCellsAdultBoneMarrowPl1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1\ urlLabel FANTOM5 Details:\ CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_ctss_rev Cd133+StemCellsAdultBoneMarrowPl1- bigWig CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_reverse 0 1892 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD133%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20pool1.CNhs12552.12224-129F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12224-129F1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd133+StemCellsAdultBoneMarrowPl1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1\ urlLabel FANTOM5 Details:\ CD133StemCellsCordBloodDerivedPool1_CNhs12545_tpm_fwd Cd133+StemCellsCordBloodPl1+ bigWig CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_forward 1 1893 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD133%2b%20stem%20cells%20-%20cord%20blood%20derived%2c%20pool1.CNhs12545.12223-129E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12223-129E9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd133+StemCellsCordBloodPl1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD133StemCellsCordBloodDerivedPool1_CNhs12545_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9\ urlLabel FANTOM5 Details:\ CD133StemCellsCordBloodDerivedPool1_CNhs12545_ctss_fwd Cd133+StemCellsCordBloodPl1+ bigWig CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_forward 0 1893 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD133%2b%20stem%20cells%20-%20cord%20blood%20derived%2c%20pool1.CNhs12545.12223-129E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12223-129E9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd133+StemCellsCordBloodPl1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD133StemCellsCordBloodDerivedPool1_CNhs12545_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9\ urlLabel FANTOM5 Details:\ CD133StemCellsCordBloodDerivedPool1_CNhs12545_tpm_rev Cd133+StemCellsCordBloodPl1- bigWig CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_reverse 1 1894 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD133%2b%20stem%20cells%20-%20cord%20blood%20derived%2c%20pool1.CNhs12545.12223-129E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12223-129E9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd133+StemCellsCordBloodPl1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD133StemCellsCordBloodDerivedPool1_CNhs12545_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9\ urlLabel FANTOM5 Details:\ CD133StemCellsCordBloodDerivedPool1_CNhs12545_ctss_rev Cd133+StemCellsCordBloodPl1- bigWig CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_reverse 0 1894 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD133%2b%20stem%20cells%20-%20cord%20blood%20derived%2c%20pool1.CNhs12545.12223-129E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12223-129E9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd133+StemCellsCordBloodPl1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD133StemCellsCordBloodDerivedPool1_CNhs12545_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13229_tpm_fwd Cd14-cd16+MonocytesD1+ bigWig CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_forward 1 1895 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor1.CNhs13229.11790-124B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11790-124B8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14-cd16+MonocytesD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor1_CNhs13229_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13229_ctss_fwd Cd14-cd16+MonocytesD1+ bigWig CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_forward 0 1895 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor1.CNhs13229.11790-124B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11790-124B8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14-cd16+MonocytesD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor1_CNhs13229_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13229_tpm_rev Cd14-cd16+MonocytesD1- bigWig CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_reverse 1 1896 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor1.CNhs13229.11790-124B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11790-124B8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14-cd16+MonocytesD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor1_CNhs13229_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13229_ctss_rev Cd14-cd16+MonocytesD1- bigWig CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_reverse 0 1896 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor1.CNhs13229.11790-124B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11790-124B8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14-cd16+MonocytesD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor1_CNhs13229_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation1_CNhs12177_tpm_fwd Cd19+BCellsPluriD090309Dn1+ bigWig CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_forward 1 1897 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12177.12189-129B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12189-129B2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090309Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090309Donation1_CNhs12177_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation1_CNhs12177_ctss_fwd Cd19+BCellsPluriD090309Dn1+ bigWig CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_forward 0 1897 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12177.12189-129B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12189-129B2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090309Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090309Donation1_CNhs12177_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation1_CNhs12177_tpm_rev Cd19+BCellsPluriD090309Dn1- bigWig CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_reverse 1 1898 0 0 255 127 127 255 0 0 0 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/gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12177.12189-129B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12189-129B2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090309Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090309Donation1_CNhs12177_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation2_CNhs12179_tpm_fwd Cd19+BCellsPluriD090309Dn2+ bigWig CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_forward 1 1899 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12179.12194-129B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12194-129B7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090309Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090309Donation2_CNhs12179_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation2_CNhs12179_ctss_fwd Cd19+BCellsPluriD090309Dn2+ bigWig CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_forward 0 1899 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12179.12194-129B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12194-129B7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090309Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090309Donation2_CNhs12179_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation2_CNhs12179_tpm_rev Cd19+BCellsPluriD090309Dn2- bigWig CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_reverse 1 1900 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12179.12194-129B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12194-129B7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090309Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090309Donation2_CNhs12179_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation2_CNhs12179_ctss_rev Cd19+BCellsPluriD090309Dn2- bigWig CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_reverse 0 1900 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12179.12194-129B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12194-129B7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090309Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090309Donation2_CNhs12179_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation3_CNhs12181_tpm_fwd Cd19+BCellsPluriD090309Dn3+ bigWig CD19+ B Cells (pluriselect), donor090309, donation3_CNhs12181_12199-129C3_forward 1 1901 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12199-129C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation3.CNhs12181.12199-129C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090309, donation3_CNhs12181_12199-129C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12199-129C3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090309Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090309Donation3_CNhs12181_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12199-129C3\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation3_CNhs12181_ctss_fwd Cd19+BCellsPluriD090309Dn3+ bigWig CD19+ B Cells (pluriselect), donor090309, donation3_CNhs12181_12199-129C3_forward 0 1901 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12199-129C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation3.CNhs12181.12199-129C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090309, donation3_CNhs12181_12199-129C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12199-129C3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090309Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090309Donation3_CNhs12181_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12199-129C3\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation3_CNhs12181_tpm_rev Cd19+BCellsPluriD090309Dn3- bigWig CD19+ B Cells (pluriselect), donor090309, donation3_CNhs12181_12199-129C3_reverse 1 1902 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12199-129C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation3.CNhs12181.12199-129C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090309, donation3_CNhs12181_12199-129C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12199-129C3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090309Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090309Donation3_CNhs12181_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12199-129C3\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation3_CNhs12181_ctss_rev Cd19+BCellsPluriD090309Dn3- bigWig CD19+ B Cells (pluriselect), donor090309, donation3_CNhs12181_12199-129C3_reverse 0 1902 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12199-129C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation3.CNhs12181.12199-129C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090309, donation3_CNhs12181_12199-129C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12199-129C3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090309Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090309Donation3_CNhs12181_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12199-129C3\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090325Donation1_CNhs12531_tpm_fwd Cd19+BCellsPluriD090325Dn1+ bigWig CD19+ B Cells (pluriselect), donor090325, donation1_CNhs12531_12151-128F9_forward 1 1903 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12151-128F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation1.CNhs12531.12151-128F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090325, donation1_CNhs12531_12151-128F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12151-128F9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090325Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090325Donation1_CNhs12531_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12151-128F9\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090325Donation1_CNhs12531_ctss_fwd Cd19+BCellsPluriD090325Dn1+ bigWig CD19+ B Cells (pluriselect), donor090325, donation1_CNhs12531_12151-128F9_forward 0 1903 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12151-128F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation1.CNhs12531.12151-128F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090325, donation1_CNhs12531_12151-128F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12151-128F9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090325Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090325Donation1_CNhs12531_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12151-128F9\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090325Donation1_CNhs12531_tpm_rev Cd19+BCellsPluriD090325Dn1- bigWig CD19+ B Cells (pluriselect), donor090325, donation1_CNhs12531_12151-128F9_reverse 1 1904 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12151-128F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation1.CNhs12531.12151-128F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090325, donation1_CNhs12531_12151-128F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12151-128F9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090325Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090325Donation1_CNhs12531_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12151-128F9\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090325Donation1_CNhs12531_ctss_rev Cd19+BCellsPluriD090325Dn1- bigWig CD19+ B Cells (pluriselect), donor090325, donation1_CNhs12531_12151-128F9_reverse 0 1904 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12151-128F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation1.CNhs12531.12151-128F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090325, donation1_CNhs12531_12151-128F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12151-128F9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090325Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090325Donation1_CNhs12531_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12151-128F9\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090325Donation2_CNhs12175_tpm_fwd Cd19+BCellsPluriD090325Dn2+ bigWig CD19+ B Cells (pluriselect), donor090325, donation2_CNhs12175_12174-128I5_forward 1 1905 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12174-128I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation2.CNhs12175.12174-128I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090325, donation2_CNhs12175_12174-128I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12174-128I5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090325Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090325Donation2_CNhs12175_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12174-128I5\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090325Donation2_CNhs12175_ctss_fwd Cd19+BCellsPluriD090325Dn2+ bigWig CD19+ B Cells (pluriselect), donor090325, donation2_CNhs12175_12174-128I5_forward 0 1905 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12174-128I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation2.CNhs12175.12174-128I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090325, donation2_CNhs12175_12174-128I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12174-128I5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090325Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090325Donation2_CNhs12175_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12174-128I5\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090325Donation2_CNhs12175_tpm_rev Cd19+BCellsPluriD090325Dn2- bigWig CD19+ B Cells (pluriselect), donor090325, donation2_CNhs12175_12174-128I5_reverse 1 1906 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12174-128I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation2.CNhs12175.12174-128I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090325, donation2_CNhs12175_12174-128I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12174-128I5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090325Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090325Donation2_CNhs12175_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12174-128I5\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090325Donation2_CNhs12175_ctss_rev Cd19+BCellsPluriD090325Dn2- bigWig CD19+ B Cells (pluriselect), donor090325, donation2_CNhs12175_12174-128I5_reverse 0 1906 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12174-128I5 regulation 0 bigDataUrl 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/gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation1.CNhs12183.12204-129C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090612, donation1_CNhs12183_12204-129C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12204-129C8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090612Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090612Donation1_CNhs12183_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12204-129C8\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation1_CNhs12183_ctss_fwd Cd19+BCellsPluriD090612Dn1+ bigWig CD19+ B Cells (pluriselect), donor090612, donation1_CNhs12183_12204-129C8_forward 0 1907 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12204-129C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation1.CNhs12183.12204-129C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090612, donation1_CNhs12183_12204-129C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12204-129C8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090612Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090612Donation1_CNhs12183_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12204-129C8\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation1_CNhs12183_tpm_rev Cd19+BCellsPluriD090612Dn1- bigWig CD19+ B Cells (pluriselect), donor090612, donation1_CNhs12183_12204-129C8_reverse 1 1908 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12204-129C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation1.CNhs12183.12204-129C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090612, donation1_CNhs12183_12204-129C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12204-129C8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090612Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090612Donation1_CNhs12183_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12204-129C8\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation1_CNhs12183_ctss_rev Cd19+BCellsPluriD090612Dn1- bigWig CD19+ B Cells (pluriselect), donor090612, donation1_CNhs12183_12204-129C8_reverse 0 1908 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12204-129C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation1.CNhs12183.12204-129C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090612, donation1_CNhs12183_12204-129C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12204-129C8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090612Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090612Donation1_CNhs12183_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12204-129C8\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation2_CNhs12185_tpm_fwd Cd19+BCellsPluriD090612Dn2+ bigWig CD19+ B Cells (pluriselect), donor090612, donation2_CNhs12185_12209-129D4_forward 1 1909 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12209-129D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12185.12209-129D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090612, donation2_CNhs12185_12209-129D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12209-129D4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090612Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090612Donation2_CNhs12185_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12209-129D4\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation2_CNhs12185_ctss_fwd Cd19+BCellsPluriD090612Dn2+ bigWig CD19+ B Cells (pluriselect), donor090612, donation2_CNhs12185_12209-129D4_forward 0 1909 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12209-129D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12185.12209-129D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090612, donation2_CNhs12185_12209-129D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12209-129D4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090612Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090612Donation2_CNhs12185_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12209-129D4\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation2_CNhs12185_tpm_rev Cd19+BCellsPluriD090612Dn2- bigWig CD19+ B Cells (pluriselect), donor090612, donation2_CNhs12185_12209-129D4_reverse 1 1910 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12209-129D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12185.12209-129D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090612, donation2_CNhs12185_12209-129D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12209-129D4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090612Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090612Donation2_CNhs12185_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12209-129D4\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation2_CNhs12185_ctss_rev Cd19+BCellsPluriD090612Dn2- bigWig CD19+ B Cells (pluriselect), donor090612, donation2_CNhs12185_12209-129D4_reverse 0 1910 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12209-129D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12185.12209-129D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090612, donation2_CNhs12185_12209-129D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12209-129D4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090612Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090612Donation2_CNhs12185_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12209-129D4\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation3_CNhs12188_tpm_fwd Cd19+BCellsPluriD090612Dn3+ bigWig CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_forward 1 1911 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12188.12214-129D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12214-129D9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090612Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090612Donation3_CNhs12188_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation3_CNhs12188_ctss_fwd Cd19+BCellsPluriD090612Dn3+ bigWig CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_forward 0 1911 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12188.12214-129D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12214-129D9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090612Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090612Donation3_CNhs12188_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation3_CNhs12188_tpm_rev Cd19+BCellsPluriD090612Dn3- bigWig CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_reverse 1 1912 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12188.12214-129D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12214-129D9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090612Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090612Donation3_CNhs12188_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation3_CNhs12188_ctss_rev Cd19+BCellsPluriD090612Dn3- bigWig CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_reverse 0 1912 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12188.12214-129D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12214-129D9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090612Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090612Donation3_CNhs12188_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9\ urlLabel FANTOM5 Details:\ CD34ProgenitorsDonor1_CNhs13227_tpm_fwd Cd34+ProgenitorsD1+ bigWig CD34+ Progenitors, donor1_CNhs13227_11545-120B6_forward 1 1913 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20Progenitors%2c%20donor1.CNhs13227.11545-120B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD34+ Progenitors, donor1_CNhs13227_11545-120B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11545-120B6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+ProgenitorsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD34ProgenitorsDonor1_CNhs13227_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6\ urlLabel FANTOM5 Details:\ CD34ProgenitorsDonor1_CNhs13227_ctss_fwd Cd34+ProgenitorsD1+ bigWig CD34+ Progenitors, donor1_CNhs13227_11545-120B6_forward 0 1913 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20Progenitors%2c%20donor1.CNhs13227.11545-120B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD34+ Progenitors, donor1_CNhs13227_11545-120B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11545-120B6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+ProgenitorsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD34ProgenitorsDonor1_CNhs13227_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6\ urlLabel FANTOM5 Details:\ CD34ProgenitorsDonor1_CNhs13227_tpm_rev Cd34+ProgenitorsD1- bigWig CD34+ Progenitors, donor1_CNhs13227_11545-120B6_reverse 1 1914 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20Progenitors%2c%20donor1.CNhs13227.11545-120B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD34+ Progenitors, donor1_CNhs13227_11545-120B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11545-120B6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+ProgenitorsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD34ProgenitorsDonor1_CNhs13227_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6\ urlLabel FANTOM5 Details:\ CD34ProgenitorsDonor1_CNhs13227_ctss_rev Cd34+ProgenitorsD1- bigWig CD34+ Progenitors, donor1_CNhs13227_11545-120B6_reverse 0 1914 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20Progenitors%2c%20donor1.CNhs13227.11545-120B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD34+ Progenitors, donor1_CNhs13227_11545-120B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11545-120B6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+ProgenitorsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD34ProgenitorsDonor1_CNhs13227_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6\ urlLabel FANTOM5 Details:\ CD34ProgenitorsDonor2_CNhs12205_tpm_fwd Cd34+ProgenitorsD2+ bigWig CD34+ Progenitors, donor2_CNhs12205_11625-122B5_forward 1 1915 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20Progenitors%2c%20donor2.CNhs12205.11625-122B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD34+ Progenitors, donor2_CNhs12205_11625-122B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11625-122B5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+ProgenitorsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD34ProgenitorsDonor2_CNhs12205_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5\ urlLabel FANTOM5 Details:\ CD34ProgenitorsDonor2_CNhs12205_ctss_fwd Cd34+ProgenitorsD2+ bigWig CD34+ Progenitors, donor2_CNhs12205_11625-122B5_forward 0 1915 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20Progenitors%2c%20donor2.CNhs12205.11625-122B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD34+ Progenitors, donor2_CNhs12205_11625-122B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11625-122B5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+ProgenitorsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD34ProgenitorsDonor2_CNhs12205_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5\ urlLabel FANTOM5 Details:\ CD34ProgenitorsDonor2_CNhs12205_tpm_rev Cd34+ProgenitorsD2- bigWig CD34+ Progenitors, donor2_CNhs12205_11625-122B5_reverse 1 1916 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20Progenitors%2c%20donor2.CNhs12205.11625-122B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD34+ Progenitors, donor2_CNhs12205_11625-122B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11625-122B5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+ProgenitorsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD34ProgenitorsDonor2_CNhs12205_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5\ urlLabel FANTOM5 Details:\ CD34ProgenitorsDonor2_CNhs12205_ctss_rev Cd34+ProgenitorsD2- bigWig CD34+ Progenitors, donor2_CNhs12205_11625-122B5_reverse 0 1916 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20Progenitors%2c%20donor2.CNhs12205.11625-122B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD34+ Progenitors, donor2_CNhs12205_11625-122B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11625-122B5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+ProgenitorsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD34ProgenitorsDonor2_CNhs12205_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5\ urlLabel FANTOM5 Details:\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_tpm_fwd Cd34+StemCellsAdultBoneMarrowD1Tr2+ bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_forward 1 1917 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep2.CNhs12553.12225-129F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_ctss_fwd Cd34+StemCellsAdultBoneMarrowD1Tr2+ bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_forward 0 1917 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep2.CNhs12553.12225-129F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_tpm_rev Cd34+StemCellsAdultBoneMarrowD1Tr2- bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_reverse 1 1918 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep2.CNhs12553.12225-129F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_ctss_rev Cd34+StemCellsAdultBoneMarrowD1Tr2- bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_reverse 0 1918 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep2.CNhs12553.12225-129F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_tpm_fwd Cd4+cd25+cd45ra+D1+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_forward 1 1919 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor1.CNhs13238.11780-124A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11780-124A7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+D1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_ctss_fwd Cd4+cd25+cd45ra+D1+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_forward 0 1919 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor1.CNhs13238.11780-124A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11780-124A7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+D1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_tpm_rev Cd4+cd25+cd45ra+D1- bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_reverse 1 1920 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor1.CNhs13238.11780-124A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11780-124A7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+D1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_ctss_rev Cd4+cd25+cd45ra+D1- bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_reverse 0 1920 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor1.CNhs13238.11780-124A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11780-124A7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+D1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_tpm_fwd Cd4+cd25+cd45ra+D2+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_forward 1 1921 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor2.CNhs13235.11796-124C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11796-124C5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+D2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_ctss_fwd Cd4+cd25+cd45ra+D2+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_forward 0 1921 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor2.CNhs13235.11796-124C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11796-124C5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+D2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_tpm_rev Cd4+cd25+cd45ra+D2- bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_reverse 1 1922 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor2.CNhs13235.11796-124C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11796-124C5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+D2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_ctss_rev Cd4+cd25+cd45ra+D2- bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_reverse 0 1922 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor2.CNhs13235.11796-124C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11796-124C5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+D2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_tpm_fwd Cd4+cd25-cd45ra-D1+ bigWig CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_forward 1 1923 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor1.CNhs13239.11786-124B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11786-124B4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-D1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_ctss_fwd Cd4+cd25-cd45ra-D1+ bigWig CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_forward 0 1923 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor1.CNhs13239.11786-124B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11786-124B4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-D1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_tpm_rev Cd4+cd25-cd45ra-D1- bigWig CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_reverse 1 1924 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor1.CNhs13239.11786-124B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11786-124B4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-D1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_ctss_rev Cd4+cd25-cd45ra-D1- bigWig CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_reverse 0 1924 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor1.CNhs13239.11786-124B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11786-124B4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-D1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_tpm_fwd Cd4+cd25-cd45ra-D2+ bigWig CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_forward 1 1925 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor2.CNhs13237.11798-124C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11798-124C7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-D2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_ctss_fwd Cd4+cd25-cd45ra-D2+ bigWig CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_forward 0 1925 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor2.CNhs13237.11798-124C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11798-124C7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-D2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_tpm_rev Cd4+cd25-cd45ra-D2- bigWig CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_reverse 1 1926 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor2.CNhs13237.11798-124C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11798-124C7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-D2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_ctss_rev Cd4+cd25-cd45ra-D2- bigWig CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_reverse 0 1926 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor2.CNhs13237.11798-124C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11798-124C7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-D2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation1_CNhs12176_tpm_fwd Cd8+TCellsPluriD090309Dn1+ bigWig CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_forward 1 1927 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12176.12186-129A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12186-129A8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090309Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090309Donation1_CNhs12176_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation1_CNhs12176_ctss_fwd Cd8+TCellsPluriD090309Dn1+ bigWig CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_forward 0 1927 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12176.12186-129A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12186-129A8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090309Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090309Donation1_CNhs12176_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation1_CNhs12176_tpm_rev Cd8+TCellsPluriD090309Dn1- bigWig CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_reverse 1 1928 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12176.12186-129A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12186-129A8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090309Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090309Donation1_CNhs12176_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation1_CNhs12176_ctss_rev Cd8+TCellsPluriD090309Dn1- bigWig CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_reverse 0 1928 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12176.12186-129A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12186-129A8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090309Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090309Donation1_CNhs12176_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation2_CNhs12178_tpm_fwd Cd8+TCellsPluriD090309Dn2+ bigWig CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_forward 1 1929 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12178.12191-129B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12191-129B4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090309Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090309Donation2_CNhs12178_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation2_CNhs12178_ctss_fwd Cd8+TCellsPluriD090309Dn2+ bigWig CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_forward 0 1929 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12178.12191-129B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12191-129B4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090309Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090309Donation2_CNhs12178_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation2_CNhs12178_tpm_rev Cd8+TCellsPluriD090309Dn2- bigWig CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_reverse 1 1930 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12178.12191-129B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12191-129B4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090309Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090309Donation2_CNhs12178_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation2_CNhs12178_ctss_rev Cd8+TCellsPluriD090309Dn2- bigWig CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_reverse 0 1930 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12178.12191-129B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12191-129B4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090309Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090309Donation2_CNhs12178_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation3_CNhs12180_tpm_fwd Cd8+TCellsPluriD090309Dn3+ bigWig CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_forward 1 1931 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation3.CNhs12180.12196-129B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12196-129B9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090309Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090309Donation3_CNhs12180_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation3_CNhs12180_ctss_fwd Cd8+TCellsPluriD090309Dn3+ bigWig CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_forward 0 1931 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation3.CNhs12180.12196-129B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12196-129B9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090309Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090309Donation3_CNhs12180_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation3_CNhs12180_tpm_rev Cd8+TCellsPluriD090309Dn3- bigWig CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_reverse 1 1932 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation3.CNhs12180.12196-129B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12196-129B9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090309Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090309Donation3_CNhs12180_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation3_CNhs12180_ctss_rev Cd8+TCellsPluriD090309Dn3- bigWig CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_reverse 0 1932 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation3.CNhs12180.12196-129B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12196-129B9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090309Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090309Donation3_CNhs12180_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090325Donation1_CNhs12201_tpm_fwd Cd8+TCellsPluriD090325Dn1+ bigWig CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_forward 1 1933 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation1.CNhs12201.12148-128F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12148-128F6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090325Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090325Donation1_CNhs12201_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090325Donation1_CNhs12201_ctss_fwd Cd8+TCellsPluriD090325Dn1+ bigWig CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_forward 0 1933 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation1.CNhs12201.12148-128F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12148-128F6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090325Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090325Donation1_CNhs12201_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090325Donation1_CNhs12201_tpm_rev Cd8+TCellsPluriD090325Dn1- bigWig CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_reverse 1 1934 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation1.CNhs12201.12148-128F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12148-128F6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090325Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090325Donation1_CNhs12201_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090325Donation1_CNhs12201_ctss_rev Cd8+TCellsPluriD090325Dn1- bigWig CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_reverse 0 1934 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation1.CNhs12201.12148-128F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12148-128F6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090325Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090325Donation1_CNhs12201_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090325Donation2_CNhs12199_tpm_fwd Cd8+TCellsPluriD090325Dn2+ bigWig CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_forward 1 1935 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation2.CNhs12199.12171-128I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12171-128I2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090325Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090325Donation2_CNhs12199_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090325Donation2_CNhs12199_ctss_fwd Cd8+TCellsPluriD090325Dn2+ bigWig CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_forward 0 1935 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation2.CNhs12199.12171-128I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12171-128I2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090325Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090325Donation2_CNhs12199_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090325Donation2_CNhs12199_tpm_rev Cd8+TCellsPluriD090325Dn2- bigWig CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_reverse 1 1936 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation2.CNhs12199.12171-128I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12171-128I2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090325Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090325Donation2_CNhs12199_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090325Donation2_CNhs12199_ctss_rev Cd8+TCellsPluriD090325Dn2- bigWig CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_reverse 0 1936 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation2.CNhs12199.12171-128I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12171-128I2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090325Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090325Donation2_CNhs12199_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation1_CNhs12182_tpm_fwd Cd8+TCellsPluriD090612Dn1+ bigWig CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_forward 1 1937 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation1.CNhs12182.12201-129C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12201-129C5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090612Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090612Donation1_CNhs12182_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation1_CNhs12182_ctss_fwd Cd8+TCellsPluriD090612Dn1+ bigWig CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_forward 0 1937 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation1.CNhs12182.12201-129C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12201-129C5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090612Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090612Donation1_CNhs12182_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation1_CNhs12182_tpm_rev Cd8+TCellsPluriD090612Dn1- bigWig CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_reverse 1 1938 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation1.CNhs12182.12201-129C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12201-129C5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090612Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090612Donation1_CNhs12182_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation1_CNhs12182_ctss_rev Cd8+TCellsPluriD090612Dn1- bigWig CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_reverse 0 1938 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation1.CNhs12182.12201-129C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12201-129C5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090612Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090612Donation1_CNhs12182_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation2_CNhs12184_tpm_fwd Cd8+TCellsPluriD090612Dn2+ bigWig CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_forward 1 1939 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12184.12206-129D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12206-129D1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090612Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090612Donation2_CNhs12184_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation2_CNhs12184_ctss_fwd Cd8+TCellsPluriD090612Dn2+ bigWig CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_forward 0 1939 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12184.12206-129D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12206-129D1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090612Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090612Donation2_CNhs12184_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation2_CNhs12184_tpm_rev Cd8+TCellsPluriD090612Dn2- bigWig CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_reverse 1 1940 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12184.12206-129D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12206-129D1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090612Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090612Donation2_CNhs12184_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation2_CNhs12184_ctss_rev Cd8+TCellsPluriD090612Dn2- bigWig CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_reverse 0 1940 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12184.12206-129D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12206-129D1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090612Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090612Donation2_CNhs12184_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation3_CNhs12187_tpm_fwd Cd8+TCellsPluriD090612Dn3+ bigWig CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_forward 1 1941 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12187.12211-129D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12211-129D6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090612Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090612Donation3_CNhs12187_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation3_CNhs12187_ctss_fwd Cd8+TCellsPluriD090612Dn3+ bigWig CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_forward 0 1941 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12187.12211-129D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12211-129D6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090612Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090612Donation3_CNhs12187_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation3_CNhs12187_tpm_rev Cd8+TCellsPluriD090612Dn3- bigWig CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_reverse 1 1942 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12187.12211-129D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12211-129D6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090612Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090612Donation3_CNhs12187_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation3_CNhs12187_ctss_rev Cd8+TCellsPluriD090612Dn3- bigWig CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_reverse 0 1942 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12187.12211-129D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12211-129D6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090612Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090612Donation3_CNhs12187_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6\ urlLabel FANTOM5 Details:\ CommonMyeloidProgenitorCMPDonor1_CNhs12518_tpm_fwd CommonMyeloidProgenitorCmpD1+ bigWig common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_forward 1 1943 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor1.CNhs12518.12130-128D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12130-128D6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel CommonMyeloidProgenitorCmpD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CommonMyeloidProgenitorCMPDonor1_CNhs12518_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6\ urlLabel FANTOM5 Details:\ CommonMyeloidProgenitorCMPDonor1_CNhs12518_ctss_fwd CommonMyeloidProgenitorCmpD1+ bigWig common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_forward 0 1943 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor1.CNhs12518.12130-128D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12130-128D6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel CommonMyeloidProgenitorCmpD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CommonMyeloidProgenitorCMPDonor1_CNhs12518_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6\ urlLabel FANTOM5 Details:\ CommonMyeloidProgenitorCMPDonor1_CNhs12518_tpm_rev CommonMyeloidProgenitorCmpD1- bigWig common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_reverse 1 1944 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor1.CNhs12518.12130-128D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12130-128D6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel CommonMyeloidProgenitorCmpD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CommonMyeloidProgenitorCMPDonor1_CNhs12518_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6\ urlLabel FANTOM5 Details:\ CommonMyeloidProgenitorCMPDonor1_CNhs12518_ctss_rev CommonMyeloidProgenitorCmpD1- bigWig common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_reverse 0 1944 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor1.CNhs12518.12130-128D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12130-128D6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel CommonMyeloidProgenitorCmpD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CommonMyeloidProgenitorCMPDonor1_CNhs12518_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6\ urlLabel FANTOM5 Details:\ CommonMyeloidProgenitorCMPDonor2_CNhs12523_tpm_fwd CommonMyeloidProgenitorCmpD2+ bigWig common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_forward 1 1945 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor2.CNhs12523.12134-128E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12134-128E1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel CommonMyeloidProgenitorCmpD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CommonMyeloidProgenitorCMPDonor2_CNhs12523_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1\ urlLabel FANTOM5 Details:\ CommonMyeloidProgenitorCMPDonor2_CNhs12523_ctss_fwd CommonMyeloidProgenitorCmpD2+ bigWig common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_forward 0 1945 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor2.CNhs12523.12134-128E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12134-128E1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel CommonMyeloidProgenitorCmpD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CommonMyeloidProgenitorCMPDonor2_CNhs12523_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1\ urlLabel FANTOM5 Details:\ CommonMyeloidProgenitorCMPDonor2_CNhs12523_tpm_rev CommonMyeloidProgenitorCmpD2- bigWig common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_reverse 1 1946 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor2.CNhs12523.12134-128E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12134-128E1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel CommonMyeloidProgenitorCmpD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CommonMyeloidProgenitorCMPDonor2_CNhs12523_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1\ urlLabel FANTOM5 Details:\ CommonMyeloidProgenitorCMPDonor2_CNhs12523_ctss_rev CommonMyeloidProgenitorCmpD2- bigWig common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_reverse 0 1946 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor2.CNhs12523.12134-128E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12134-128E1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel CommonMyeloidProgenitorCmpD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CommonMyeloidProgenitorCMPDonor2_CNhs12523_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1\ urlLabel FANTOM5 Details:\ DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_tpm_fwd DendriticCellsMonocyteImmatureD2+ bigWig Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_forward 1 1947 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor2.CNhs12195.11308-117C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11308-117C3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsMonocyteImmatureD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3\ urlLabel FANTOM5 Details:\ DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_ctss_fwd DendriticCellsMonocyteImmatureD2+ bigWig Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_forward 0 1947 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor2.CNhs12195.11308-117C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11308-117C3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsMonocyteImmatureD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3\ urlLabel FANTOM5 Details:\ DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_tpm_rev DendriticCellsMonocyteImmatureD2- bigWig Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_reverse 1 1948 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor2.CNhs12195.11308-117C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11308-117C3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsMonocyteImmatureD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3\ urlLabel FANTOM5 Details:\ DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_ctss_rev DendriticCellsMonocyteImmatureD2- bigWig Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_reverse 0 1948 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor2.CNhs12195.11308-117C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11308-117C3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsMonocyteImmatureD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor2_CNhs12196_tpm_fwd DendriticCellsPlasmacytoidD2+ bigWig Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_forward 1 1949 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor2.CNhs12196.11309-117C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11309-117C4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsPlasmacytoidD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track DendriticCellsPlasmacytoidDonor2_CNhs12196_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor2_CNhs12196_ctss_fwd DendriticCellsPlasmacytoidD2+ bigWig Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_forward 0 1949 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor2.CNhs12196.11309-117C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11309-117C4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsPlasmacytoidD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track DendriticCellsPlasmacytoidDonor2_CNhs12196_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor2_CNhs12196_tpm_rev DendriticCellsPlasmacytoidD2- bigWig Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_reverse 1 1950 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor2.CNhs12196.11309-117C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11309-117C4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsPlasmacytoidD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track DendriticCellsPlasmacytoidDonor2_CNhs12196_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor2_CNhs12196_ctss_rev DendriticCellsPlasmacytoidD2- bigWig Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_reverse 0 1950 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor2.CNhs12196.11309-117C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11309-117C4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsPlasmacytoidD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track DendriticCellsPlasmacytoidDonor2_CNhs12196_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor3_CNhs12200_tpm_fwd DendriticCellsPlasmacytoidD3+ bigWig Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_forward 1 1951 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor3.CNhs12200.11385-118B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11385-118B8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsPlasmacytoidD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track DendriticCellsPlasmacytoidDonor3_CNhs12200_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor3_CNhs12200_ctss_fwd DendriticCellsPlasmacytoidD3+ bigWig Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_forward 0 1951 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor3.CNhs12200.11385-118B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11385-118B8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsPlasmacytoidD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track DendriticCellsPlasmacytoidDonor3_CNhs12200_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor3_CNhs12200_tpm_rev DendriticCellsPlasmacytoidD3- bigWig Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_reverse 1 1952 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor3.CNhs12200.11385-118B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11385-118B8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsPlasmacytoidD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track DendriticCellsPlasmacytoidDonor3_CNhs12200_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor3_CNhs12200_ctss_rev DendriticCellsPlasmacytoidD3- bigWig Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_reverse 0 1952 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor3.CNhs12200.11385-118B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11385-118B8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsPlasmacytoidD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track DendriticCellsPlasmacytoidDonor3_CNhs12200_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8\ urlLabel FANTOM5 Details:\ EosinophilsDonor1_CNhs12547_tpm_fwd EosinophilsD1+ bigWig Eosinophils, donor1_CNhs12547_12244-129H3_forward 1 1953 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor1.CNhs12547.12244-129H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Eosinophils, donor1_CNhs12547_12244-129H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12244-129H3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel EosinophilsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track EosinophilsDonor1_CNhs12547_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3\ urlLabel FANTOM5 Details:\ EosinophilsDonor1_CNhs12547_ctss_fwd EosinophilsD1+ bigWig Eosinophils, donor1_CNhs12547_12244-129H3_forward 0 1953 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor1.CNhs12547.12244-129H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Eosinophils, donor1_CNhs12547_12244-129H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12244-129H3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel EosinophilsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track EosinophilsDonor1_CNhs12547_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3\ urlLabel FANTOM5 Details:\ EosinophilsDonor1_CNhs12547_tpm_rev EosinophilsD1- bigWig Eosinophils, donor1_CNhs12547_12244-129H3_reverse 1 1954 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor1.CNhs12547.12244-129H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Eosinophils, donor1_CNhs12547_12244-129H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12244-129H3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel EosinophilsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track EosinophilsDonor1_CNhs12547_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3\ urlLabel FANTOM5 Details:\ EosinophilsDonor1_CNhs12547_ctss_rev EosinophilsD1- bigWig Eosinophils, donor1_CNhs12547_12244-129H3_reverse 0 1954 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor1.CNhs12547.12244-129H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Eosinophils, donor1_CNhs12547_12244-129H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12244-129H3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel EosinophilsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track EosinophilsDonor1_CNhs12547_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3\ urlLabel FANTOM5 Details:\ EosinophilsDonor2_CNhs12548_tpm_fwd EosinophilsD2+ bigWig Eosinophils, donor2_CNhs12548_12245-129H4_forward 1 1955 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor2.CNhs12548.12245-129H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Eosinophils, donor2_CNhs12548_12245-129H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12245-129H4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel EosinophilsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track EosinophilsDonor2_CNhs12548_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4\ urlLabel FANTOM5 Details:\ EosinophilsDonor2_CNhs12548_ctss_fwd EosinophilsD2+ bigWig Eosinophils, donor2_CNhs12548_12245-129H4_forward 0 1955 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor2.CNhs12548.12245-129H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Eosinophils, donor2_CNhs12548_12245-129H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12245-129H4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel EosinophilsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track EosinophilsDonor2_CNhs12548_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4\ urlLabel FANTOM5 Details:\ EosinophilsDonor2_CNhs12548_tpm_rev EosinophilsD2- bigWig Eosinophils, donor2_CNhs12548_12245-129H4_reverse 1 1956 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor2.CNhs12548.12245-129H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Eosinophils, donor2_CNhs12548_12245-129H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12245-129H4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel EosinophilsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track EosinophilsDonor2_CNhs12548_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4\ urlLabel FANTOM5 Details:\ EosinophilsDonor2_CNhs12548_ctss_rev EosinophilsD2- bigWig Eosinophils, donor2_CNhs12548_12245-129H4_reverse 0 1956 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor2.CNhs12548.12245-129H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Eosinophils, donor2_CNhs12548_12245-129H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12245-129H4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel EosinophilsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track EosinophilsDonor2_CNhs12548_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4\ urlLabel FANTOM5 Details:\ EosinophilsDonor3_CNhs12549_tpm_fwd EosinophilsD3+ bigWig Eosinophils, donor3_CNhs12549_12246-129H5_forward 1 1957 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor3.CNhs12549.12246-129H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Eosinophils, donor3_CNhs12549_12246-129H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12246-129H5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel EosinophilsD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track EosinophilsDonor3_CNhs12549_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5\ urlLabel FANTOM5 Details:\ EosinophilsDonor3_CNhs12549_ctss_fwd EosinophilsD3+ bigWig Eosinophils, donor3_CNhs12549_12246-129H5_forward 0 1957 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor3.CNhs12549.12246-129H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Eosinophils, donor3_CNhs12549_12246-129H5_forward\ maxHeightPixels 100:8:8\ metadata 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http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5\ urlLabel FANTOM5 Details:\ EosinophilsDonor3_CNhs12549_ctss_rev EosinophilsD3- bigWig Eosinophils, donor3_CNhs12549_12246-129H5_reverse 0 1958 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor3.CNhs12549.12246-129H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Eosinophils, donor3_CNhs12549_12246-129H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12246-129H5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel EosinophilsD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track EosinophilsDonor3_CNhs12549_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor1_CNhs12519_tpm_fwd GranulocyteMacrophageProgenitorD1+ bigWig granulocyte macrophage progenitor, donor1_CNhs12519_12131-128D7_forward 1 1959 255 0 0 255 127 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/gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor1.CNhs12519.12131-128D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel granulocyte macrophage progenitor, donor1_CNhs12519_12131-128D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12131-128D7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel GranulocyteMacrophageProgenitorD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track GranulocyteMacrophageProgenitorDonor1_CNhs12519_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12131-128D7\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor1_CNhs12519_tpm_rev GranulocyteMacrophageProgenitorD1- bigWig granulocyte macrophage progenitor, donor1_CNhs12519_12131-128D7_reverse 1 1960 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12131-128D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor1.CNhs12519.12131-128D7.hg38.tpm.rev.bw\ color 0,0,255\ 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subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track GranulocyteMacrophageProgenitorDonor2_CNhs12524_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor2_CNhs12524_ctss_fwd GranulocyteMacrophageProgenitorD2+ bigWig granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_forward 0 1961 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor2.CNhs12524.12135-128E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12135-128E2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel GranulocyteMacrophageProgenitorD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track GranulocyteMacrophageProgenitorDonor2_CNhs12524_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor2_CNhs12524_tpm_rev GranulocyteMacrophageProgenitorD2- bigWig granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_reverse 1 1962 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor2.CNhs12524.12135-128E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12135-128E2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel GranulocyteMacrophageProgenitorD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track GranulocyteMacrophageProgenitorDonor2_CNhs12524_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor2_CNhs12524_ctss_rev GranulocyteMacrophageProgenitorD2- bigWig granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_reverse 0 1962 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor2.CNhs12524.12135-128E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12135-128E2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel GranulocyteMacrophageProgenitorD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track GranulocyteMacrophageProgenitorDonor2_CNhs12524_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor3_CNhs12528_tpm_fwd GranulocyteMacrophageProgenitorD3+ bigWig granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_forward 1 1963 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor3.CNhs12528.12139-128E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12139-128E6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel GranulocyteMacrophageProgenitorD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track GranulocyteMacrophageProgenitorDonor3_CNhs12528_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor3_CNhs12528_ctss_fwd GranulocyteMacrophageProgenitorD3+ bigWig granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_forward 0 1963 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor3.CNhs12528.12139-128E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12139-128E6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel GranulocyteMacrophageProgenitorD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track GranulocyteMacrophageProgenitorDonor3_CNhs12528_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor3_CNhs12528_tpm_rev GranulocyteMacrophageProgenitorD3- bigWig granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_reverse 1 1964 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor3.CNhs12528.12139-128E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12139-128E6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel GranulocyteMacrophageProgenitorD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track GranulocyteMacrophageProgenitorDonor3_CNhs12528_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor3_CNhs12528_ctss_rev GranulocyteMacrophageProgenitorD3- bigWig granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_reverse 0 1964 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor3.CNhs12528.12139-128E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12139-128E6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel GranulocyteMacrophageProgenitorD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track GranulocyteMacrophageProgenitorDonor3_CNhs12528_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor1MZH3_CNhs12538_tpm_fwd MallassezCellsD1+ bigWig Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_forward 1 1965 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor1%20%28MZH3%29.CNhs12538.12142-128E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12142-128E9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MallassezCellsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MallassezderivedCellsDonor1MZH3_CNhs12538_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor1MZH3_CNhs12538_ctss_fwd MallassezCellsD1+ bigWig Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_forward 0 1965 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor1%20%28MZH3%29.CNhs12538.12142-128E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12142-128E9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MallassezCellsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MallassezderivedCellsDonor1MZH3_CNhs12538_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor1MZH3_CNhs12538_tpm_rev MallassezCellsD1- bigWig Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_reverse 1 1966 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor1%20%28MZH3%29.CNhs12538.12142-128E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12142-128E9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MallassezCellsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MallassezderivedCellsDonor1MZH3_CNhs12538_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor1MZH3_CNhs12538_ctss_rev MallassezCellsD1- bigWig Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_reverse 0 1966 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor1%20%28MZH3%29.CNhs12538.12142-128E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12142-128E9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MallassezCellsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MallassezderivedCellsDonor1MZH3_CNhs12538_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor1_CNhs12558_tpm_fwd MatureAdipocyteD1+ bigWig mature adipocyte, donor1_CNhs12558_12231-129F8_forward 1 1967 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor1.CNhs12558.12231-129F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor1_CNhs12558_12231-129F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12231-129F8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor1_CNhs12558_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor1_CNhs12558_ctss_fwd MatureAdipocyteD1+ bigWig mature adipocyte, donor1_CNhs12558_12231-129F8_forward 0 1967 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor1.CNhs12558.12231-129F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor1_CNhs12558_12231-129F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12231-129F8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor1_CNhs12558_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor1_CNhs12558_tpm_rev MatureAdipocyteD1- bigWig mature adipocyte, donor1_CNhs12558_12231-129F8_reverse 1 1968 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor1.CNhs12558.12231-129F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor1_CNhs12558_12231-129F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12231-129F8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor1_CNhs12558_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor1_CNhs12558_ctss_rev MatureAdipocyteD1- bigWig mature adipocyte, donor1_CNhs12558_12231-129F8_reverse 0 1968 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor1.CNhs12558.12231-129F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor1_CNhs12558_12231-129F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12231-129F8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor1_CNhs12558_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor2_CNhs12559_tpm_fwd MatureAdipocyteD2+ bigWig mature adipocyte, donor2_CNhs12559_12232-129F9_forward 1 1969 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor2.CNhs12559.12232-129F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor2_CNhs12559_12232-129F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12232-129F9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor2_CNhs12559_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor2_CNhs12559_ctss_fwd MatureAdipocyteD2+ bigWig mature adipocyte, donor2_CNhs12559_12232-129F9_forward 0 1969 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor2.CNhs12559.12232-129F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor2_CNhs12559_12232-129F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12232-129F9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor2_CNhs12559_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor2_CNhs12559_tpm_rev MatureAdipocyteD2- bigWig mature adipocyte, donor2_CNhs12559_12232-129F9_reverse 1 1970 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor2.CNhs12559.12232-129F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor2_CNhs12559_12232-129F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12232-129F9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor2_CNhs12559_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor2_CNhs12559_ctss_rev MatureAdipocyteD2- bigWig mature adipocyte, donor2_CNhs12559_12232-129F9_reverse 0 1970 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor2.CNhs12559.12232-129F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor2_CNhs12559_12232-129F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12232-129F9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor2_CNhs12559_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor3_CNhs12560_tpm_fwd MatureAdipocyteD3+ bigWig mature adipocyte, donor3_CNhs12560_12233-129G1_forward 1 1971 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor3.CNhs12560.12233-129G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor3_CNhs12560_12233-129G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12233-129G1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor3_CNhs12560_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor3_CNhs12560_ctss_fwd MatureAdipocyteD3+ bigWig mature adipocyte, donor3_CNhs12560_12233-129G1_forward 0 1971 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor3.CNhs12560.12233-129G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor3_CNhs12560_12233-129G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12233-129G1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor3_CNhs12560_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor3_CNhs12560_tpm_rev MatureAdipocyteD3- bigWig mature adipocyte, donor3_CNhs12560_12233-129G1_reverse 1 1972 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor3.CNhs12560.12233-129G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor3_CNhs12560_12233-129G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12233-129G1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor3_CNhs12560_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor3_CNhs12560_ctss_rev MatureAdipocyteD3- bigWig mature adipocyte, donor3_CNhs12560_12233-129G1_reverse 0 1972 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor3.CNhs12560.12233-129G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor3_CNhs12560_12233-129G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12233-129G1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor3_CNhs12560_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor4_CNhs12562_tpm_fwd MatureAdipocyteD4+ bigWig mature adipocyte, donor4_CNhs12562_12234-129G2_forward 1 1973 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor4.CNhs12562.12234-129G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor4_CNhs12562_12234-129G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12234-129G2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD4+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor4_CNhs12562_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor4_CNhs12562_ctss_fwd MatureAdipocyteD4+ bigWig mature adipocyte, donor4_CNhs12562_12234-129G2_forward 0 1973 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor4.CNhs12562.12234-129G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor4_CNhs12562_12234-129G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12234-129G2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD4+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor4_CNhs12562_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor4_CNhs12562_tpm_rev MatureAdipocyteD4- bigWig mature adipocyte, donor4_CNhs12562_12234-129G2_reverse 1 1974 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor4.CNhs12562.12234-129G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor4_CNhs12562_12234-129G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12234-129G2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD4-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor4_CNhs12562_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor4_CNhs12562_ctss_rev MatureAdipocyteD4- bigWig mature adipocyte, donor4_CNhs12562_12234-129G2_reverse 0 1974 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor4.CNhs12562.12234-129G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor4_CNhs12562_12234-129G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12234-129G2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD4-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor4_CNhs12562_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor2_CNhs12197_tpm_fwd MesothelialCellsD2+ bigWig Mesothelial Cells, donor2_CNhs12197_12156-128G5_forward 1 1975 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor2.CNhs12197.12156-128G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesothelial Cells, donor2_CNhs12197_12156-128G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12156-128G5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MesothelialCellsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MesothelialCellsDonor2_CNhs12197_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor2_CNhs12197_ctss_fwd MesothelialCellsD2+ bigWig Mesothelial Cells, donor2_CNhs12197_12156-128G5_forward 0 1975 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor2.CNhs12197.12156-128G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesothelial Cells, donor2_CNhs12197_12156-128G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12156-128G5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MesothelialCellsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MesothelialCellsDonor2_CNhs12197_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor2_CNhs12197_tpm_rev MesothelialCellsD2- bigWig Mesothelial Cells, donor2_CNhs12197_12156-128G5_reverse 1 1976 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor2.CNhs12197.12156-128G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesothelial Cells, donor2_CNhs12197_12156-128G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12156-128G5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MesothelialCellsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MesothelialCellsDonor2_CNhs12197_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor2_CNhs12197_ctss_rev MesothelialCellsD2- bigWig Mesothelial Cells, donor2_CNhs12197_12156-128G5_reverse 0 1976 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor2.CNhs12197.12156-128G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesothelial Cells, donor2_CNhs12197_12156-128G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12156-128G5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MesothelialCellsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MesothelialCellsDonor2_CNhs12197_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor1TechRep2_CNhs12554_tpm_fwd NasalEpithelialCellsD1Tr2+ bigWig nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_forward 1 1977 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep2.CNhs12554.12226-129F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NasalEpithelialCellsD1Tr2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NasalEpithelialCellsDonor1TechRep2_CNhs12554_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor1TechRep2_CNhs12554_ctss_fwd NasalEpithelialCellsD1Tr2+ bigWig nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_forward 0 1977 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep2.CNhs12554.12226-129F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NasalEpithelialCellsD1Tr2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NasalEpithelialCellsDonor1TechRep2_CNhs12554_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor1TechRep2_CNhs12554_tpm_rev NasalEpithelialCellsD1Tr2- bigWig nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_reverse 1 1978 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep2.CNhs12554.12226-129F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NasalEpithelialCellsD1Tr2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NasalEpithelialCellsDonor1TechRep2_CNhs12554_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor1TechRep2_CNhs12554_ctss_rev NasalEpithelialCellsD1Tr2- bigWig nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_reverse 0 1978 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep2.CNhs12554.12226-129F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NasalEpithelialCellsD1Tr2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NasalEpithelialCellsDonor1TechRep2_CNhs12554_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor1_CNhs12522_tpm_fwd NeutrophilPmnD1+ bigWig neutrophil PMN, donor1_CNhs12522_12133-128D9_forward 1 1979 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor1.CNhs12522.12133-128D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel neutrophil PMN, donor1_CNhs12522_12133-128D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12133-128D9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilPmnD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NeutrophilPMNDonor1_CNhs12522_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor1_CNhs12522_ctss_fwd NeutrophilPmnD1+ bigWig neutrophil PMN, donor1_CNhs12522_12133-128D9_forward 0 1979 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor1.CNhs12522.12133-128D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel neutrophil PMN, donor1_CNhs12522_12133-128D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12133-128D9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilPmnD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NeutrophilPMNDonor1_CNhs12522_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor1_CNhs12522_tpm_rev NeutrophilPmnD1- bigWig neutrophil PMN, donor1_CNhs12522_12133-128D9_reverse 1 1980 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor1.CNhs12522.12133-128D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel neutrophil PMN, donor1_CNhs12522_12133-128D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12133-128D9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilPmnD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NeutrophilPMNDonor1_CNhs12522_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor1_CNhs12522_ctss_rev NeutrophilPmnD1- bigWig neutrophil PMN, donor1_CNhs12522_12133-128D9_reverse 0 1980 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor1.CNhs12522.12133-128D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel neutrophil PMN, donor1_CNhs12522_12133-128D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12133-128D9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilPmnD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NeutrophilPMNDonor1_CNhs12522_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor2_CNhs12526_tpm_fwd NeutrophilPmnD2+ bigWig neutrophil PMN, donor2_CNhs12526_12137-128E4_forward 1 1981 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor2.CNhs12526.12137-128E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel neutrophil PMN, donor2_CNhs12526_12137-128E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12137-128E4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilPmnD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NeutrophilPMNDonor2_CNhs12526_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor2_CNhs12526_ctss_fwd NeutrophilPmnD2+ bigWig neutrophil PMN, donor2_CNhs12526_12137-128E4_forward 0 1981 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor2.CNhs12526.12137-128E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel neutrophil PMN, donor2_CNhs12526_12137-128E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12137-128E4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilPmnD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NeutrophilPMNDonor2_CNhs12526_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor2_CNhs12526_tpm_rev NeutrophilPmnD2- bigWig neutrophil PMN, donor2_CNhs12526_12137-128E4_reverse 1 1982 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor2.CNhs12526.12137-128E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel neutrophil PMN, donor2_CNhs12526_12137-128E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12137-128E4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilPmnD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NeutrophilPMNDonor2_CNhs12526_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor2_CNhs12526_ctss_rev NeutrophilPmnD2- bigWig neutrophil PMN, donor2_CNhs12526_12137-128E4_reverse 0 1982 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor2.CNhs12526.12137-128E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel neutrophil PMN, donor2_CNhs12526_12137-128E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12137-128E4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilPmnD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NeutrophilPMNDonor2_CNhs12526_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor3_CNhs12530_tpm_fwd NeutrophilPmnD3+ bigWig neutrophil PMN, donor3_CNhs12530_12141-128E8_forward 1 1983 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor3.CNhs12530.12141-128E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel neutrophil PMN, donor3_CNhs12530_12141-128E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12141-128E8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilPmnD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NeutrophilPMNDonor3_CNhs12530_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor3_CNhs12530_ctss_fwd NeutrophilPmnD3+ bigWig neutrophil PMN, donor3_CNhs12530_12141-128E8_forward 0 1983 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor3.CNhs12530.12141-128E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel neutrophil PMN, donor3_CNhs12530_12141-128E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12141-128E8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilPmnD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NeutrophilPMNDonor3_CNhs12530_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor3_CNhs12530_tpm_rev NeutrophilPmnD3- bigWig neutrophil PMN, donor3_CNhs12530_12141-128E8_reverse 1 1984 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor3.CNhs12530.12141-128E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel neutrophil PMN, donor3_CNhs12530_12141-128E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12141-128E8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilPmnD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NeutrophilPMNDonor3_CNhs12530_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor3_CNhs12530_ctss_rev NeutrophilPmnD3- bigWig neutrophil PMN, donor3_CNhs12530_12141-128E8_reverse 0 1984 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor3.CNhs12530.12141-128E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel neutrophil PMN, donor3_CNhs12530_12141-128E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12141-128E8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilPmnD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NeutrophilPMNDonor3_CNhs12530_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor1_CNhs12520_tpm_fwd Promyelocytes/myelocytesPmcD1+ bigWig promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_forward 1 1985 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor1.CNhs12520.12132-128D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12132-128D8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Promyelocytes/myelocytesPmcD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track PromyelocytesmyelocytesPMCDonor1_CNhs12520_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor1_CNhs12520_ctss_fwd Promyelocytes/myelocytesPmcD1+ bigWig promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_forward 0 1985 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor1.CNhs12520.12132-128D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12132-128D8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Promyelocytes/myelocytesPmcD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track PromyelocytesmyelocytesPMCDonor1_CNhs12520_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor1_CNhs12520_tpm_rev Promyelocytes/myelocytesPmcD1- bigWig promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_reverse 1 1986 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor1.CNhs12520.12132-128D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12132-128D8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Promyelocytes/myelocytesPmcD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track PromyelocytesmyelocytesPMCDonor1_CNhs12520_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor1_CNhs12520_ctss_rev Promyelocytes/myelocytesPmcD1- bigWig promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_reverse 0 1986 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor1.CNhs12520.12132-128D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12132-128D8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Promyelocytes/myelocytesPmcD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track PromyelocytesmyelocytesPMCDonor1_CNhs12520_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor2_CNhs12525_tpm_fwd Promyelocytes/myelocytesPmcD2+ bigWig promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_forward 1 1987 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor2.CNhs12525.12136-128E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12136-128E3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Promyelocytes/myelocytesPmcD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track PromyelocytesmyelocytesPMCDonor2_CNhs12525_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor2_CNhs12525_ctss_fwd Promyelocytes/myelocytesPmcD2+ bigWig promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_forward 0 1987 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor2.CNhs12525.12136-128E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12136-128E3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Promyelocytes/myelocytesPmcD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track PromyelocytesmyelocytesPMCDonor2_CNhs12525_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor2_CNhs12525_tpm_rev Promyelocytes/myelocytesPmcD2- bigWig promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_reverse 1 1988 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor2.CNhs12525.12136-128E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12136-128E3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Promyelocytes/myelocytesPmcD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track PromyelocytesmyelocytesPMCDonor2_CNhs12525_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor2_CNhs12525_ctss_rev Promyelocytes/myelocytesPmcD2- bigWig promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_reverse 0 1988 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor2.CNhs12525.12136-128E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12136-128E3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Promyelocytes/myelocytesPmcD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track PromyelocytesmyelocytesPMCDonor2_CNhs12525_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor3_CNhs12529_tpm_fwd Promyelocytes/myelocytesPmcD3+ bigWig promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_forward 1 1989 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor3.CNhs12529.12140-128E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12140-128E7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Promyelocytes/myelocytesPmcD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track PromyelocytesmyelocytesPMCDonor3_CNhs12529_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor3_CNhs12529_ctss_fwd Promyelocytes/myelocytesPmcD3+ bigWig promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_forward 0 1989 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor3.CNhs12529.12140-128E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12140-128E7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Promyelocytes/myelocytesPmcD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track PromyelocytesmyelocytesPMCDonor3_CNhs12529_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor3_CNhs12529_tpm_rev Promyelocytes/myelocytesPmcD3- bigWig promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_reverse 1 1990 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor3.CNhs12529.12140-128E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12140-128E7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Promyelocytes/myelocytesPmcD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track PromyelocytesmyelocytesPMCDonor3_CNhs12529_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor3_CNhs12529_ctss_rev Promyelocytes/myelocytesPmcD3- bigWig promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_reverse 0 1990 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor3.CNhs12529.12140-128E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12140-128E7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Promyelocytes/myelocytesPmcD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track PromyelocytesmyelocytesPMCDonor3_CNhs12529_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor1_CNhs11051_tpm_fwd AdipocyteBreastD1+ bigWig Adipocyte - breast, donor1_CNhs11051_11376-118A8_forward 1 1991 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20breast%2c%20donor1.CNhs11051.11376-118A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - breast, donor1_CNhs11051_11376-118A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11376-118A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteBreastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteBreastDonor1_CNhs11051_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor1_CNhs11051_ctss_fwd AdipocyteBreastD1+ bigWig Adipocyte - breast, donor1_CNhs11051_11376-118A8_forward 0 1991 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20breast%2c%20donor1.CNhs11051.11376-118A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - breast, donor1_CNhs11051_11376-118A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11376-118A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteBreastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteBreastDonor1_CNhs11051_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor1_CNhs11051_tpm_rev AdipocyteBreastD1- bigWig Adipocyte - breast, donor1_CNhs11051_11376-118A8_reverse 1 1992 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20breast%2c%20donor1.CNhs11051.11376-118A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - breast, donor1_CNhs11051_11376-118A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11376-118A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteBreastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteBreastDonor1_CNhs11051_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor1_CNhs11051_ctss_rev AdipocyteBreastD1- bigWig Adipocyte - breast, donor1_CNhs11051_11376-118A8_reverse 0 1992 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20breast%2c%20donor1.CNhs11051.11376-118A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - breast, donor1_CNhs11051_11376-118A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11376-118A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteBreastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteBreastDonor1_CNhs11051_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor2_CNhs11969_tpm_fwd AdipocyteBreastD2+ bigWig Adipocyte - breast, donor2_CNhs11969_11327-117E4_forward 1 1993 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20breast%2c%20donor2.CNhs11969.11327-117E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - breast, donor2_CNhs11969_11327-117E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11327-117E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteBreastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteBreastDonor2_CNhs11969_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor2_CNhs11969_ctss_fwd AdipocyteBreastD2+ bigWig Adipocyte - breast, donor2_CNhs11969_11327-117E4_forward 0 1993 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20breast%2c%20donor2.CNhs11969.11327-117E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - breast, donor2_CNhs11969_11327-117E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11327-117E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteBreastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteBreastDonor2_CNhs11969_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor2_CNhs11969_tpm_rev AdipocyteBreastD2- bigWig Adipocyte - breast, donor2_CNhs11969_11327-117E4_reverse 1 1994 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20breast%2c%20donor2.CNhs11969.11327-117E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - breast, donor2_CNhs11969_11327-117E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11327-117E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteBreastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteBreastDonor2_CNhs11969_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor2_CNhs11969_ctss_rev AdipocyteBreastD2- bigWig Adipocyte - breast, donor2_CNhs11969_11327-117E4_reverse 0 1994 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20breast%2c%20donor2.CNhs11969.11327-117E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - breast, donor2_CNhs11969_11327-117E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11327-117E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteBreastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteBreastDonor2_CNhs11969_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor1_CNhs11054_tpm_fwd AdipocyteOmentalD1+ bigWig Adipocyte - omental, donor1_CNhs11054_11473-119C6_forward 1 1995 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor1.CNhs11054.11473-119C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - omental, donor1_CNhs11054_11473-119C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11473-119C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteOmentalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteOmentalDonor1_CNhs11054_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor1_CNhs11054_ctss_fwd AdipocyteOmentalD1+ bigWig Adipocyte - omental, donor1_CNhs11054_11473-119C6_forward 0 1995 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor1.CNhs11054.11473-119C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - omental, donor1_CNhs11054_11473-119C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11473-119C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteOmentalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteOmentalDonor1_CNhs11054_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor1_CNhs11054_tpm_rev AdipocyteOmentalD1- bigWig Adipocyte - omental, donor1_CNhs11054_11473-119C6_reverse 1 1996 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor1.CNhs11054.11473-119C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - omental, donor1_CNhs11054_11473-119C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11473-119C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteOmentalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteOmentalDonor1_CNhs11054_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor1_CNhs11054_ctss_rev AdipocyteOmentalD1- bigWig Adipocyte - omental, donor1_CNhs11054_11473-119C6_reverse 0 1996 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor1.CNhs11054.11473-119C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - omental, donor1_CNhs11054_11473-119C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11473-119C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteOmentalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteOmentalDonor1_CNhs11054_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor2_CNhs12067_tpm_fwd AdipocyteOmentalD2+ bigWig Adipocyte - omental, donor2_CNhs12067_11474-119C7_forward 1 1997 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor2.CNhs12067.11474-119C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - omental, donor2_CNhs12067_11474-119C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11474-119C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteOmentalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteOmentalDonor2_CNhs12067_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor2_CNhs12067_ctss_fwd AdipocyteOmentalD2+ bigWig Adipocyte - omental, donor2_CNhs12067_11474-119C7_forward 0 1997 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor2.CNhs12067.11474-119C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - omental, donor2_CNhs12067_11474-119C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11474-119C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteOmentalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteOmentalDonor2_CNhs12067_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor2_CNhs12067_tpm_rev AdipocyteOmentalD2- bigWig Adipocyte - omental, donor2_CNhs12067_11474-119C7_reverse 1 1998 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor2.CNhs12067.11474-119C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - omental, donor2_CNhs12067_11474-119C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11474-119C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteOmentalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteOmentalDonor2_CNhs12067_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor2_CNhs12067_ctss_rev AdipocyteOmentalD2- bigWig Adipocyte - omental, donor2_CNhs12067_11474-119C7_reverse 0 1998 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor2.CNhs12067.11474-119C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - omental, donor2_CNhs12067_11474-119C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11474-119C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteOmentalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteOmentalDonor2_CNhs12067_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor3_CNhs12068_tpm_fwd AdipocyteOmentalD3+ bigWig Adipocyte - omental, donor3_CNhs12068_11475-119C8_forward 1 1999 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor3.CNhs12068.11475-119C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - omental, donor3_CNhs12068_11475-119C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11475-119C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteOmentalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteOmentalDonor3_CNhs12068_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor3_CNhs12068_ctss_fwd AdipocyteOmentalD3+ bigWig Adipocyte - omental, donor3_CNhs12068_11475-119C8_forward 0 1999 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor3.CNhs12068.11475-119C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - omental, donor3_CNhs12068_11475-119C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11475-119C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteOmentalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteOmentalDonor3_CNhs12068_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor3_CNhs12068_tpm_rev AdipocyteOmentalD3- bigWig Adipocyte - omental, donor3_CNhs12068_11475-119C8_reverse 1 2000 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor3.CNhs12068.11475-119C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - omental, donor3_CNhs12068_11475-119C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11475-119C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteOmentalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteOmentalDonor3_CNhs12068_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor3_CNhs12068_ctss_rev AdipocyteOmentalD3- bigWig Adipocyte - omental, donor3_CNhs12068_11475-119C8_reverse 0 2000 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor3.CNhs12068.11475-119C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - omental, donor3_CNhs12068_11475-119C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11475-119C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteOmentalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteOmentalDonor3_CNhs12068_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8\ urlLabel FANTOM5 Details:\ AdipocytePerirenalDonor1_CNhs12069_tpm_fwd AdipocytePerirenalD1+ bigWig Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_forward 1 2001 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20perirenal%2c%20donor1.CNhs12069.11476-119C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11476-119C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocytePerirenalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocytePerirenalDonor1_CNhs12069_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9\ urlLabel FANTOM5 Details:\ AdipocytePerirenalDonor1_CNhs12069_ctss_fwd AdipocytePerirenalD1+ bigWig Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_forward 0 2001 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20perirenal%2c%20donor1.CNhs12069.11476-119C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11476-119C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocytePerirenalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocytePerirenalDonor1_CNhs12069_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9\ urlLabel FANTOM5 Details:\ AdipocytePerirenalDonor1_CNhs12069_tpm_rev AdipocytePerirenalD1- bigWig Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_reverse 1 2002 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20perirenal%2c%20donor1.CNhs12069.11476-119C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11476-119C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocytePerirenalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocytePerirenalDonor1_CNhs12069_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9\ urlLabel FANTOM5 Details:\ AdipocytePerirenalDonor1_CNhs12069_ctss_rev AdipocytePerirenalD1- bigWig Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_reverse 0 2002 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20perirenal%2c%20donor1.CNhs12069.11476-119C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11476-119C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocytePerirenalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocytePerirenalDonor1_CNhs12069_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor1_CNhs12494_tpm_fwd AdipocyteSubcutaneousD1+ bigWig Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_forward 1 2003 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor1.CNhs12494.11259-116F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11259-116F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteSubcutaneousD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteSubcutaneousDonor1_CNhs12494_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor1_CNhs12494_ctss_fwd AdipocyteSubcutaneousD1+ bigWig Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_forward 0 2003 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor1.CNhs12494.11259-116F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11259-116F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteSubcutaneousD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteSubcutaneousDonor1_CNhs12494_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor1_CNhs12494_tpm_rev AdipocyteSubcutaneousD1- bigWig Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_reverse 1 2004 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor1.CNhs12494.11259-116F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11259-116F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteSubcutaneousD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteSubcutaneousDonor1_CNhs12494_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor1_CNhs12494_ctss_rev AdipocyteSubcutaneousD1- bigWig Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_reverse 0 2004 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor1.CNhs12494.11259-116F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11259-116F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteSubcutaneousD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteSubcutaneousDonor1_CNhs12494_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor2_CNhs11371_tpm_fwd AdipocyteSubcutaneousD2+ bigWig Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_forward 1 2005 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor2.CNhs11371.11336-117F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11336-117F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteSubcutaneousD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteSubcutaneousDonor2_CNhs11371_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor2_CNhs11371_ctss_fwd AdipocyteSubcutaneousD2+ bigWig Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_forward 0 2005 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor2.CNhs11371.11336-117F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11336-117F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteSubcutaneousD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteSubcutaneousDonor2_CNhs11371_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor2_CNhs11371_tpm_rev AdipocyteSubcutaneousD2- bigWig Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_reverse 1 2006 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor2.CNhs11371.11336-117F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11336-117F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteSubcutaneousD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteSubcutaneousDonor2_CNhs11371_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor2_CNhs11371_ctss_rev AdipocyteSubcutaneousD2- bigWig Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_reverse 0 2006 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor2.CNhs11371.11336-117F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11336-117F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteSubcutaneousD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteSubcutaneousDonor2_CNhs11371_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor3_CNhs12017_tpm_fwd AdipocyteSubcutaneousD3+ bigWig Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_forward 1 2007 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor3.CNhs12017.11408-118E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11408-118E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteSubcutaneousD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteSubcutaneousDonor3_CNhs12017_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor3_CNhs12017_ctss_fwd AdipocyteSubcutaneousD3+ bigWig Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_forward 0 2007 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor3.CNhs12017.11408-118E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11408-118E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteSubcutaneousD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteSubcutaneousDonor3_CNhs12017_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor3_CNhs12017_tpm_rev AdipocyteSubcutaneousD3- bigWig Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_reverse 1 2008 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor3.CNhs12017.11408-118E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11408-118E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteSubcutaneousD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteSubcutaneousDonor3_CNhs12017_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor3_CNhs12017_ctss_rev AdipocyteSubcutaneousD3- bigWig Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_reverse 0 2008 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor3.CNhs12017.11408-118E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11408-118E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteSubcutaneousD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteSubcutaneousDonor3_CNhs12017_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4\ urlLabel FANTOM5 Details:\ AlveolarEpithelialCellsDonor1_CNhs11325_tpm_fwd AlveolarEpithelialCellsD1+ bigWig Alveolar Epithelial Cells, donor1_CNhs11325_11510-119G7_forward 1 2009 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11510-119G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor1.CNhs11325.11510-119G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Alveolar Epithelial Cells, donor1_CNhs11325_11510-119G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11510-119G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AlveolarEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AlveolarEpithelialCellsDonor1_CNhs11325_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11510-119G7\ urlLabel FANTOM5 Details:\ AlveolarEpithelialCellsDonor1_CNhs11325_ctss_fwd AlveolarEpithelialCellsD1+ bigWig Alveolar Epithelial Cells, donor1_CNhs11325_11510-119G7_forward 0 2009 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11510-119G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor1.CNhs11325.11510-119G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Alveolar Epithelial Cells, donor1_CNhs11325_11510-119G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11510-119G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AlveolarEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AlveolarEpithelialCellsDonor1_CNhs11325_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11510-119G7\ urlLabel FANTOM5 Details:\ AlveolarEpithelialCellsDonor1_CNhs11325_tpm_rev AlveolarEpithelialCellsD1- bigWig Alveolar Epithelial Cells, donor1_CNhs11325_11510-119G7_reverse 1 2010 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11510-119G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor1.CNhs11325.11510-119G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Alveolar Epithelial Cells, donor1_CNhs11325_11510-119G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11510-119G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AlveolarEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AlveolarEpithelialCellsDonor1_CNhs11325_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11510-119G7\ urlLabel FANTOM5 Details:\ AlveolarEpithelialCellsDonor1_CNhs11325_ctss_rev AlveolarEpithelialCellsD1- bigWig Alveolar Epithelial Cells, donor1_CNhs11325_11510-119G7_reverse 0 2010 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11510-119G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor1.CNhs11325.11510-119G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Alveolar Epithelial Cells, donor1_CNhs11325_11510-119G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11510-119G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AlveolarEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AlveolarEpithelialCellsDonor1_CNhs11325_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11510-119G7\ urlLabel FANTOM5 Details:\ AlveolarEpithelialCellsDonor2_CNhs12084_tpm_fwd AlveolarEpithelialCellsD2+ bigWig Alveolar Epithelial Cells, donor2_CNhs12084_11590-120G6_forward 1 2011 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11590-120G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor2.CNhs12084.11590-120G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Alveolar Epithelial Cells, donor2_CNhs12084_11590-120G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11590-120G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AlveolarEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AlveolarEpithelialCellsDonor2_CNhs12084_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11590-120G6\ urlLabel FANTOM5 Details:\ AlveolarEpithelialCellsDonor2_CNhs12084_ctss_fwd AlveolarEpithelialCellsD2+ bigWig Alveolar Epithelial Cells, donor2_CNhs12084_11590-120G6_forward 0 2011 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11590-120G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor2.CNhs12084.11590-120G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Alveolar Epithelial Cells, donor2_CNhs12084_11590-120G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11590-120G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AlveolarEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AlveolarEpithelialCellsDonor2_CNhs12084_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11590-120G6\ urlLabel FANTOM5 Details:\ AlveolarEpithelialCellsDonor2_CNhs12084_tpm_rev AlveolarEpithelialCellsD2- bigWig Alveolar Epithelial Cells, donor2_CNhs12084_11590-120G6_reverse 1 2012 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11590-120G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor2.CNhs12084.11590-120G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Alveolar Epithelial Cells, donor2_CNhs12084_11590-120G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11590-120G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AlveolarEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AlveolarEpithelialCellsDonor2_CNhs12084_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11590-120G6\ urlLabel FANTOM5 Details:\ AlveolarEpithelialCellsDonor2_CNhs12084_ctss_rev AlveolarEpithelialCellsD2- bigWig Alveolar Epithelial Cells, donor2_CNhs12084_11590-120G6_reverse 0 2012 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11590-120G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor2.CNhs12084.11590-120G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Alveolar Epithelial Cells, donor2_CNhs12084_11590-120G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11590-120G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AlveolarEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AlveolarEpithelialCellsDonor2_CNhs12084_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11590-120G6\ urlLabel FANTOM5 Details:\ AlveolarEpithelialCellsDonor3_CNhs12119_tpm_fwd AlveolarEpithelialCellsD3+ bigWig Alveolar Epithelial Cells, donor3_CNhs12119_11671-122G6_forward 1 2013 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11671-122G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor3.CNhs12119.11671-122G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Alveolar Epithelial Cells, donor3_CNhs12119_11671-122G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11671-122G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AlveolarEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AlveolarEpithelialCellsDonor3_CNhs12119_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11671-122G6\ urlLabel FANTOM5 Details:\ AlveolarEpithelialCellsDonor3_CNhs12119_ctss_fwd AlveolarEpithelialCellsD3+ bigWig Alveolar Epithelial Cells, donor3_CNhs12119_11671-122G6_forward 0 2013 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11671-122G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor3.CNhs12119.11671-122G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Alveolar Epithelial Cells, donor3_CNhs12119_11671-122G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11671-122G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AlveolarEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AlveolarEpithelialCellsDonor3_CNhs12119_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11671-122G6\ urlLabel FANTOM5 Details:\ AlveolarEpithelialCellsDonor3_CNhs12119_tpm_rev AlveolarEpithelialCellsD3- bigWig Alveolar Epithelial Cells, donor3_CNhs12119_11671-122G6_reverse 1 2014 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11671-122G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor3.CNhs12119.11671-122G6.hg38.tpm.rev.bw\ color 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type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11533-120A3\ urlLabel FANTOM5 Details:\ AmnioticEpithelialCellsDonor1_CNhs11341_ctss_fwd AmnioticEpithelialCellsD1+ bigWig Amniotic Epithelial Cells, donor1_CNhs11341_11533-120A3_forward 0 2015 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11533-120A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Amniotic%20Epithelial%20Cells%2c%20donor1.CNhs11341.11533-120A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Amniotic Epithelial Cells, donor1_CNhs11341_11533-120A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11533-120A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmnioticEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AmnioticEpithelialCellsDonor1_CNhs11341_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11533-120A3\ urlLabel FANTOM5 Details:\ AmnioticEpithelialCellsDonor1_CNhs11341_tpm_rev AmnioticEpithelialCellsD1- bigWig 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Details:\ AmnioticMembraneCellsDonor1_CNhs12502_ctss_fwd AmnioticMembraneCellsD1+ bigWig amniotic membrane cells, donor1_CNhs12502_12235-129G3_forward 0 2021 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12235-129G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amniotic%20membrane%20cells%2c%20donor1.CNhs12502.12235-129G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel amniotic membrane cells, donor1_CNhs12502_12235-129G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12235-129G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmnioticMembraneCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AmnioticMembraneCellsDonor1_CNhs12502_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12235-129G3\ urlLabel FANTOM5 Details:\ AmnioticMembraneCellsDonor1_CNhs12502_tpm_rev AmnioticMembraneCellsD1- bigWig amniotic membrane cells, donor1_CNhs12502_12235-129G3_reverse 1 2022 0 0 255 127 127 255 0 0 0 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AnulusPulposusCellDonor1_CNhs10876_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11248-116E6\ urlLabel FANTOM5 Details:\ AnulusPulposusCellDonor2_CNhs12064_tpm_fwd AnulusPulposusCellD2+ bigWig Anulus Pulposus Cell, donor2_CNhs12064_11463-119B5_forward 1 2029 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11463-119B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Anulus%20Pulposus%20Cell%2c%20donor2.CNhs12064.11463-119B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Anulus Pulposus Cell, donor2_CNhs12064_11463-119B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11463-119B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AnulusPulposusCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AnulusPulposusCellDonor2_CNhs12064_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11463-119B5\ urlLabel FANTOM5 Details:\ AnulusPulposusCellDonor2_CNhs12064_ctss_fwd AnulusPulposusCellD2+ bigWig Anulus Pulposus Cell, donor2_CNhs12064_11463-119B5_forward 0 2029 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11463-119B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Anulus%20Pulposus%20Cell%2c%20donor2.CNhs12064.11463-119B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Anulus Pulposus Cell, donor2_CNhs12064_11463-119B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11463-119B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AnulusPulposusCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AnulusPulposusCellDonor2_CNhs12064_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11463-119B5\ urlLabel FANTOM5 Details:\ AnulusPulposusCellDonor2_CNhs12064_tpm_rev AnulusPulposusCellD2- bigWig Anulus Pulposus Cell, donor2_CNhs12064_11463-119B5_reverse 1 2030 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11463-119B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Anulus%20Pulposus%20Cell%2c%20donor2.CNhs12064.11463-119B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Anulus Pulposus Cell, donor2_CNhs12064_11463-119B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11463-119B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AnulusPulposusCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AnulusPulposusCellDonor2_CNhs12064_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11463-119B5\ urlLabel FANTOM5 Details:\ AnulusPulposusCellDonor2_CNhs12064_ctss_rev AnulusPulposusCellD2- bigWig Anulus Pulposus Cell, donor2_CNhs12064_11463-119B5_reverse 0 2030 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11463-119B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Anulus%20Pulposus%20Cell%2c%20donor2.CNhs12064.11463-119B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Anulus Pulposus Cell, donor2_CNhs12064_11463-119B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11463-119B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AnulusPulposusCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AnulusPulposusCellDonor2_CNhs12064_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11463-119B5\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor1_CNhs11321_tpm_fwd AstrocyteCerebellumD1+ bigWig Astrocyte - cerebellum, donor1_CNhs11321_11500-119F6_forward 1 2031 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11500-119F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor1.CNhs11321.11500-119F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebellum, donor1_CNhs11321_11500-119F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11500-119F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebellumD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebellumDonor1_CNhs11321_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11500-119F6\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor1_CNhs11321_ctss_fwd AstrocyteCerebellumD1+ bigWig Astrocyte - cerebellum, donor1_CNhs11321_11500-119F6_forward 0 2031 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11500-119F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor1.CNhs11321.11500-119F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebellum, donor1_CNhs11321_11500-119F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11500-119F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebellumD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebellumDonor1_CNhs11321_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11500-119F6\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor1_CNhs11321_tpm_rev AstrocyteCerebellumD1- bigWig Astrocyte - cerebellum, donor1_CNhs11321_11500-119F6_reverse 1 2032 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11500-119F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor1.CNhs11321.11500-119F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebellum, donor1_CNhs11321_11500-119F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11500-119F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebellumD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebellumDonor1_CNhs11321_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11500-119F6\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor1_CNhs11321_ctss_rev AstrocyteCerebellumD1- bigWig Astrocyte - cerebellum, donor1_CNhs11321_11500-119F6_reverse 0 2032 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11500-119F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor1.CNhs11321.11500-119F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebellum, donor1_CNhs11321_11500-119F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11500-119F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebellumD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebellumDonor1_CNhs11321_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11500-119F6\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor2_CNhs12081_tpm_fwd AstrocyteCerebellumD2+ bigWig Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_forward 1 2033 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor2.CNhs12081.11580-120F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11580-120F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebellumD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebellumDonor2_CNhs12081_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor2_CNhs12081_ctss_fwd AstrocyteCerebellumD2+ bigWig Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_forward 0 2033 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor2.CNhs12081.11580-120F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11580-120F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebellumD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebellumDonor2_CNhs12081_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor2_CNhs12081_tpm_rev AstrocyteCerebellumD2- bigWig Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_reverse 1 2034 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor2.CNhs12081.11580-120F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11580-120F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebellumD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebellumDonor2_CNhs12081_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor2_CNhs12081_ctss_rev AstrocyteCerebellumD2- bigWig Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_reverse 0 2034 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor2.CNhs12081.11580-120F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11580-120F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebellumD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebellumDonor2_CNhs12081_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor3_CNhs12117_tpm_fwd AstrocyteCerebellumD3+ bigWig Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_forward 1 2035 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor3.CNhs12117.11661-122F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11661-122F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebellumD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebellumDonor3_CNhs12117_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor3_CNhs12117_ctss_fwd AstrocyteCerebellumD3+ bigWig Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_forward 0 2035 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor3.CNhs12117.11661-122F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11661-122F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebellumD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebellumDonor3_CNhs12117_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor3_CNhs12117_tpm_rev AstrocyteCerebellumD3- bigWig Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_reverse 1 2036 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor3.CNhs12117.11661-122F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11661-122F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebellumD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebellumDonor3_CNhs12117_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor3_CNhs12117_ctss_rev AstrocyteCerebellumD3- bigWig Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_reverse 0 2036 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor3.CNhs12117.11661-122F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11661-122F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebellumD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebellumDonor3_CNhs12117_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor1_CNhs10864_tpm_fwd AstrocyteCerebralCortexD1+ bigWig Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_forward 1 2037 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor1.CNhs10864.11235-116D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11235-116D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebralCortexD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebralCortexDonor1_CNhs10864_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor1_CNhs10864_ctss_fwd AstrocyteCerebralCortexD1+ bigWig Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_forward 0 2037 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor1.CNhs10864.11235-116D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11235-116D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebralCortexD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebralCortexDonor1_CNhs10864_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor1_CNhs10864_tpm_rev AstrocyteCerebralCortexD1- bigWig Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_reverse 1 2038 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor1.CNhs10864.11235-116D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11235-116D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebralCortexD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebralCortexDonor1_CNhs10864_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor1_CNhs10864_ctss_rev AstrocyteCerebralCortexD1- bigWig Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_reverse 0 2038 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor1.CNhs10864.11235-116D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11235-116D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebralCortexD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebralCortexDonor1_CNhs10864_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor2_CNhs11960_tpm_fwd AstrocyteCerebralCortexD2+ bigWig Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_forward 1 2039 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor2.CNhs11960.11316-117D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11316-117D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebralCortexD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebralCortexDonor2_CNhs11960_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor2_CNhs11960_ctss_fwd AstrocyteCerebralCortexD2+ bigWig Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_forward 0 2039 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor2.CNhs11960.11316-117D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11316-117D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebralCortexD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebralCortexDonor2_CNhs11960_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor2_CNhs11960_tpm_rev AstrocyteCerebralCortexD2- bigWig Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_reverse 1 2040 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor2.CNhs11960.11316-117D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11316-117D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebralCortexD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebralCortexDonor2_CNhs11960_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor2_CNhs11960_ctss_rev AstrocyteCerebralCortexD2- bigWig Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_reverse 0 2040 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor2.CNhs11960.11316-117D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11316-117D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebralCortexD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebralCortexDonor2_CNhs11960_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor3_CNhs12005_tpm_fwd AstrocyteCerebralCortexD3+ bigWig Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_forward 1 2041 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor3.CNhs12005.11392-118C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11392-118C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebralCortexD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebralCortexDonor3_CNhs12005_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor3_CNhs12005_ctss_fwd AstrocyteCerebralCortexD3+ bigWig Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_forward 0 2041 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor3.CNhs12005.11392-118C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11392-118C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebralCortexD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebralCortexDonor3_CNhs12005_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor3_CNhs12005_tpm_rev AstrocyteCerebralCortexD3- bigWig Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_reverse 1 2042 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor3.CNhs12005.11392-118C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11392-118C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebralCortexD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebralCortexDonor3_CNhs12005_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor3_CNhs12005_ctss_rev AstrocyteCerebralCortexD3- bigWig Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_reverse 0 2042 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor3.CNhs12005.11392-118C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11392-118C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebralCortexD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebralCortexDonor3_CNhs12005_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6\ urlLabel FANTOM5 Details:\ BasophilsDonor3_CNhs12575_tpm_fwd BasophilsD3+ bigWig Basophils, donor3_CNhs12575_12243-129H2_forward 1 2043 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor3.CNhs12575.12243-129H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Basophils, donor3_CNhs12575_12243-129H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12243-129H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BasophilsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BasophilsDonor3_CNhs12575_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2\ urlLabel FANTOM5 Details:\ BasophilsDonor3_CNhs12575_ctss_fwd BasophilsD3+ bigWig Basophils, donor3_CNhs12575_12243-129H2_forward 0 2043 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor3.CNhs12575.12243-129H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Basophils, donor3_CNhs12575_12243-129H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12243-129H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BasophilsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BasophilsDonor3_CNhs12575_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2\ urlLabel FANTOM5 Details:\ BasophilsDonor3_CNhs12575_tpm_rev BasophilsD3- bigWig Basophils, donor3_CNhs12575_12243-129H2_reverse 1 2044 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor3.CNhs12575.12243-129H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Basophils, donor3_CNhs12575_12243-129H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12243-129H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BasophilsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BasophilsDonor3_CNhs12575_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2\ urlLabel FANTOM5 Details:\ BasophilsDonor3_CNhs12575_ctss_rev BasophilsD3- bigWig Basophils, donor3_CNhs12575_12243-129H2_reverse 0 2044 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor3.CNhs12575.12243-129H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Basophils, donor3_CNhs12575_12243-129H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12243-129H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BasophilsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BasophilsDonor3_CNhs12575_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor1_CNhs11327_tpm_fwd BronchialEpithelialCellD1+ bigWig Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_forward 1 2045 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor1.CNhs11327.11511-119G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11511-119G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor1_CNhs11327_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor1_CNhs11327_ctss_fwd BronchialEpithelialCellD1+ bigWig Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_forward 0 2045 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor1.CNhs11327.11511-119G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11511-119G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor1_CNhs11327_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor1_CNhs11327_tpm_rev BronchialEpithelialCellD1- bigWig Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_reverse 1 2046 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor1.CNhs11327.11511-119G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11511-119G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor1_CNhs11327_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor1_CNhs11327_ctss_rev BronchialEpithelialCellD1- bigWig Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_reverse 0 2046 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor1.CNhs11327.11511-119G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11511-119G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor1_CNhs11327_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor2_CNhs12085_tpm_fwd BronchialEpithelialCellD2+ bigWig Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_forward 1 2047 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor2.CNhs12085.11591-120G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11591-120G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor2_CNhs12085_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor2_CNhs12085_ctss_fwd BronchialEpithelialCellD2+ bigWig Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_forward 0 2047 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor2.CNhs12085.11591-120G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11591-120G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor2_CNhs12085_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor2_CNhs12085_tpm_rev BronchialEpithelialCellD2- bigWig Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_reverse 1 2048 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor2.CNhs12085.11591-120G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11591-120G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor2_CNhs12085_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor2_CNhs12085_ctss_rev BronchialEpithelialCellD2- bigWig Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_reverse 0 2048 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor2.CNhs12085.11591-120G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11591-120G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor2_CNhs12085_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor3_CNhs12623_tpm_fwd BronchialEpithelialCellD3+ bigWig Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_forward 1 2049 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor3.CNhs12623.11672-122G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11672-122G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor3_CNhs12623_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor3_CNhs12623_ctss_fwd BronchialEpithelialCellD3+ bigWig Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_forward 0 2049 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor3.CNhs12623.11672-122G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11672-122G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor3_CNhs12623_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor3_CNhs12623_tpm_rev BronchialEpithelialCellD3- bigWig Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_reverse 1 2050 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor3.CNhs12623.11672-122G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11672-122G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor3_CNhs12623_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor3_CNhs12623_ctss_rev BronchialEpithelialCellD3- bigWig Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_reverse 0 2050 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor3.CNhs12623.11672-122G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11672-122G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor3_CNhs12623_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor4_CNhs12054_tpm_fwd BronchialEpithelialCellD4+ bigWig Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_forward 1 2051 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor4.CNhs12054.11453-119A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11453-119A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor4_CNhs12054_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor4_CNhs12054_ctss_fwd BronchialEpithelialCellD4+ bigWig Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_forward 0 2051 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor4.CNhs12054.11453-119A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11453-119A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor4_CNhs12054_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor4_CNhs12054_tpm_rev BronchialEpithelialCellD4- bigWig Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_reverse 1 2052 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor4.CNhs12054.11453-119A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11453-119A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor4_CNhs12054_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor4_CNhs12054_ctss_rev BronchialEpithelialCellD4- bigWig Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_reverse 0 2052 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor4.CNhs12054.11453-119A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11453-119A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor4_CNhs12054_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor5_CNhs12058_tpm_fwd BronchialEpithelialCellD5+ bigWig Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_forward 1 2053 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor5.CNhs12058.11457-119A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11457-119A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor5_CNhs12058_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor5_CNhs12058_ctss_fwd BronchialEpithelialCellD5+ bigWig Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_forward 0 2053 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor5.CNhs12058.11457-119A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11457-119A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor5_CNhs12058_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor5_CNhs12058_tpm_rev BronchialEpithelialCellD5- bigWig Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_reverse 1 2054 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor5.CNhs12058.11457-119A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11457-119A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor5_CNhs12058_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor5_CNhs12058_ctss_rev BronchialEpithelialCellD5- bigWig Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_reverse 0 2054 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor5.CNhs12058.11457-119A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11457-119A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor5_CNhs12058_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor6_CNhs12062_tpm_fwd BronchialEpithelialCellD6+ bigWig Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_forward 1 2055 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor6.CNhs12062.11461-119B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11461-119B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor6_CNhs12062_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor6_CNhs12062_ctss_fwd BronchialEpithelialCellD6+ bigWig Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_forward 0 2055 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor6.CNhs12062.11461-119B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11461-119B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor6_CNhs12062_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor6_CNhs12062_tpm_rev BronchialEpithelialCellD6- bigWig Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_reverse 1 2056 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor6.CNhs12062.11461-119B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11461-119B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor6_CNhs12062_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor6_CNhs12062_ctss_rev BronchialEpithelialCellD6- bigWig Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_reverse 0 2056 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor6.CNhs12062.11461-119B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11461-119B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor6_CNhs12062_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor7_CNhs12642_tpm_fwd BronchialEpithelialCellD7+ bigWig Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_forward 1 2057 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor7.CNhs12642.11769-123I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11769-123I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD7+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor7_CNhs12642_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor7_CNhs12642_ctss_fwd BronchialEpithelialCellD7+ bigWig Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_forward 0 2057 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor7.CNhs12642.11769-123I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11769-123I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD7+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor7_CNhs12642_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor7_CNhs12642_tpm_rev BronchialEpithelialCellD7- bigWig Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_reverse 1 2058 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor7.CNhs12642.11769-123I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11769-123I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD7-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor7_CNhs12642_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor7_CNhs12642_ctss_rev BronchialEpithelialCellD7- bigWig Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_reverse 0 2058 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor7.CNhs12642.11769-123I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11769-123I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD7-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor7_CNhs12642_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor1_CNhs12341_tpm_fwd CardiacMyocyteD1+ bigWig Cardiac Myocyte, donor1_CNhs12341_11525-119I4_forward 1 2059 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Cardiac%20Myocyte%2c%20donor1.CNhs12341.11525-119I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Cardiac Myocyte, donor1_CNhs12341_11525-119I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11525-119I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CardiacMyocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CardiacMyocyteDonor1_CNhs12341_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor1_CNhs12341_ctss_fwd CardiacMyocyteD1+ bigWig Cardiac Myocyte, donor1_CNhs12341_11525-119I4_forward 0 2059 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Cardiac%20Myocyte%2c%20donor1.CNhs12341.11525-119I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Cardiac Myocyte, donor1_CNhs12341_11525-119I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11525-119I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CardiacMyocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CardiacMyocyteDonor1_CNhs12341_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor1_CNhs12341_tpm_rev CardiacMyocyteD1- bigWig Cardiac Myocyte, donor1_CNhs12341_11525-119I4_reverse 1 2060 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Cardiac%20Myocyte%2c%20donor1.CNhs12341.11525-119I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Cardiac Myocyte, donor1_CNhs12341_11525-119I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11525-119I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CardiacMyocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CardiacMyocyteDonor1_CNhs12341_tpm_rev\ type bigWig\ url 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CD14CD16MonocytesDonor1_CNhs13541_ctss_rev Cd14+cd16+MonocytesD1- bigWig CD14+CD16+ Monocytes, donor1_CNhs13541_11789-124B7_reverse 0 2070 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11789-124B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor1.CNhs13541.11789-124B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+CD16+ Monocytes, donor1_CNhs13541_11789-124B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11789-124B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16+MonocytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor1_CNhs13541_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11789-124B7\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13208_tpm_fwd Cd14+cd16+MonocytesD2+ bigWig CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_forward 1 2071 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor2.CNhs13208.11801-124D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11801-124D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16+MonocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor2_CNhs13208_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13208_ctss_fwd Cd14+cd16+MonocytesD2+ bigWig CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_forward 0 2071 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor2.CNhs13208.11801-124D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11801-124D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16+MonocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor2_CNhs13208_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13208_tpm_rev Cd14+cd16+MonocytesD2- bigWig CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_reverse 1 2072 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor2.CNhs13208.11801-124D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11801-124D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16+MonocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor2_CNhs13208_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13208_ctss_rev Cd14+cd16+MonocytesD2- bigWig CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_reverse 0 2072 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor2.CNhs13208.11801-124D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11801-124D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16+MonocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor2_CNhs13208_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13549_tpm_fwd Cd14+cd16+MonocytesD3+ bigWig CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_forward 1 2073 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor3.CNhs13549.11912-125G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11912-125G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16+MonocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor3_CNhs13549_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13549_ctss_fwd Cd14+cd16+MonocytesD3+ bigWig CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_forward 0 2073 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor3.CNhs13549.11912-125G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11912-125G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16+MonocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor3_CNhs13549_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13549_tpm_rev Cd14+cd16+MonocytesD3- bigWig CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_reverse 1 2074 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor3.CNhs13549.11912-125G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11912-125G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16+MonocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor3_CNhs13549_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13549_ctss_rev Cd14+cd16+MonocytesD3- bigWig CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_reverse 0 2074 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor3.CNhs13549.11912-125G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11912-125G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16+MonocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor3_CNhs13549_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13224_tpm_fwd Cd14+cd16-MonocytesD1+ bigWig CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_forward 1 2075 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor1.CNhs13224.11788-124B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11788-124B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16-MonocytesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor1_CNhs13224_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13224_ctss_fwd Cd14+cd16-MonocytesD1+ bigWig CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_forward 0 2075 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor1.CNhs13224.11788-124B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11788-124B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16-MonocytesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor1_CNhs13224_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13224_tpm_rev Cd14+cd16-MonocytesD1- bigWig CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_reverse 1 2076 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor1.CNhs13224.11788-124B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11788-124B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16-MonocytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor1_CNhs13224_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13224_ctss_rev Cd14+cd16-MonocytesD1- bigWig CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_reverse 0 2076 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor1.CNhs13224.11788-124B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11788-124B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16-MonocytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor1_CNhs13224_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13216_tpm_fwd Cd14+cd16-MonocytesD2+ bigWig CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_forward 1 2077 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor2.CNhs13216.11799-124C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11799-124C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16-MonocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor2_CNhs13216_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13216_ctss_fwd Cd14+cd16-MonocytesD2+ bigWig CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_forward 0 2077 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor2.CNhs13216.11799-124C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11799-124C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16-MonocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor2_CNhs13216_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13216_tpm_rev Cd14+cd16-MonocytesD2- bigWig CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_reverse 1 2078 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor2.CNhs13216.11799-124C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11799-124C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16-MonocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor2_CNhs13216_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13216_ctss_rev Cd14+cd16-MonocytesD2- bigWig CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_reverse 0 2078 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor2.CNhs13216.11799-124C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11799-124C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16-MonocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor2_CNhs13216_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13540_tpm_fwd Cd14+cd16-MonocytesD3+ bigWig CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_forward 1 2079 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor3.CNhs13540.11910-125G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11910-125G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16-MonocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor3_CNhs13540_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13540_ctss_fwd Cd14+cd16-MonocytesD3+ bigWig CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_forward 0 2079 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor3.CNhs13540.11910-125G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11910-125G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16-MonocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor3_CNhs13540_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13540_tpm_rev Cd14+cd16-MonocytesD3- bigWig CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_reverse 1 2080 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor3.CNhs13540.11910-125G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11910-125G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16-MonocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor3_CNhs13540_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13540_ctss_rev Cd14+cd16-MonocytesD3- bigWig CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_reverse 0 2080 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor3.CNhs13540.11910-125G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11910-125G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16-MonocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor3_CNhs13540_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor1_CNhs10852_tpm_fwd Cd14+MoD1+ bigWig CD14+ Monocytes, donor1_CNhs10852_11224-116B9_forward 1 2081 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor1.CNhs10852.11224-116B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ Monocytes, donor1_CNhs10852_11224-116B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11224-116B9 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd14+MoD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesDonor1_CNhs10852_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor1_CNhs10852_ctss_fwd Cd14+MoD1+ bigWig CD14+ Monocytes, donor1_CNhs10852_11224-116B9_forward 0 2081 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor1.CNhs10852.11224-116B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ Monocytes, donor1_CNhs10852_11224-116B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11224-116B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesDonor1_CNhs10852_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor1_CNhs10852_tpm_rev Cd14+MoD1- bigWig CD14+ Monocytes, donor1_CNhs10852_11224-116B9_reverse 1 2082 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor1.CNhs10852.11224-116B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ Monocytes, donor1_CNhs10852_11224-116B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11224-116B9 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd14+MoD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesDonor1_CNhs10852_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor1_CNhs10852_ctss_rev Cd14+MoD1- bigWig CD14+ Monocytes, donor1_CNhs10852_11224-116B9_reverse 0 2082 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor1.CNhs10852.11224-116B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ Monocytes, donor1_CNhs10852_11224-116B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11224-116B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesDonor1_CNhs10852_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor2_CNhs11954_tpm_fwd Cd14+MoD2+ bigWig CD14+ Monocytes, donor2_CNhs11954_11305-117B9_forward 1 2083 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor2.CNhs11954.11305-117B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ Monocytes, donor2_CNhs11954_11305-117B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11305-117B9 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd14+MoD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesDonor2_CNhs11954_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor2_CNhs11954_ctss_fwd Cd14+MoD2+ bigWig CD14+ Monocytes, donor2_CNhs11954_11305-117B9_forward 0 2083 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor2.CNhs11954.11305-117B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ Monocytes, donor2_CNhs11954_11305-117B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11305-117B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesDonor2_CNhs11954_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor2_CNhs11954_tpm_rev Cd14+MoD2- bigWig CD14+ Monocytes, donor2_CNhs11954_11305-117B9_reverse 1 2084 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor2.CNhs11954.11305-117B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ Monocytes, donor2_CNhs11954_11305-117B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11305-117B9 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd14+MoD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesDonor2_CNhs11954_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor2_CNhs11954_ctss_rev Cd14+MoD2- bigWig CD14+ Monocytes, donor2_CNhs11954_11305-117B9_reverse 0 2084 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor2.CNhs11954.11305-117B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ Monocytes, donor2_CNhs11954_11305-117B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11305-117B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesDonor2_CNhs11954_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor3_CNhs11997_tpm_fwd Cd14+MoD3+ bigWig CD14+ Monocytes, donor3_CNhs11997_11381-118B4_forward 1 2085 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor3.CNhs11997.11381-118B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ Monocytes, donor3_CNhs11997_11381-118B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11381-118B4 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd14+MoD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesDonor3_CNhs11997_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor3_CNhs11997_ctss_fwd Cd14+MoD3+ bigWig CD14+ Monocytes, donor3_CNhs11997_11381-118B4_forward 0 2085 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor3.CNhs11997.11381-118B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ Monocytes, donor3_CNhs11997_11381-118B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11381-118B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesDonor3_CNhs11997_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor3_CNhs11997_tpm_rev Cd14+MoD3- bigWig CD14+ Monocytes, donor3_CNhs11997_11381-118B4_reverse 1 2086 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor3.CNhs11997.11381-118B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ Monocytes, donor3_CNhs11997_11381-118B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11381-118B4 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd14+MoD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesDonor3_CNhs11997_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor3_CNhs11997_ctss_rev Cd14+MoD3- bigWig CD14+ Monocytes, donor3_CNhs11997_11381-118B4_reverse 0 2086 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor3.CNhs11997.11381-118B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ Monocytes, donor3_CNhs11997_11381-118B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11381-118B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesDonor3_CNhs11997_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_tpm_fwd Cd14+MoEndothelialProgenitorCellsD1+ bigWig CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_forward 1 2087 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor1.CNhs10858.11229-116C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11229-116C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoEndothelialProgenitorCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_ctss_fwd Cd14+MoEndothelialProgenitorCellsD1+ bigWig CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_forward 0 2087 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor1.CNhs10858.11229-116C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11229-116C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoEndothelialProgenitorCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_tpm_rev Cd14+MoEndothelialProgenitorCellsD1- bigWig CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_reverse 1 2088 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor1.CNhs10858.11229-116C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11229-116C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoEndothelialProgenitorCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_ctss_rev Cd14+MoEndothelialProgenitorCellsD1- bigWig CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_reverse 0 2088 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor1.CNhs10858.11229-116C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11229-116C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoEndothelialProgenitorCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor2_CNhs11897_tpm_fwd Cd14+MoEndothelialProgenitorCellsD2+ bigWig CD14+ monocyte derived endothelial progenitor cells, donor2_CNhs11897_11310-117C5_forward 1 2089 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11310-117C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor2.CNhs11897.11310-117C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor2_CNhs11897_11310-117C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11310-117C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoEndothelialProgenitorCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor2_CNhs11897_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11310-117C5\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor2_CNhs11897_ctss_fwd Cd14+MoEndothelialProgenitorCellsD2+ bigWig CD14+ monocyte derived endothelial progenitor cells, donor2_CNhs11897_11310-117C5_forward 0 2089 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11310-117C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor2.CNhs11897.11310-117C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor2_CNhs11897_11310-117C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11310-117C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoEndothelialProgenitorCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor2_CNhs11897_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11310-117C5\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor2_CNhs11897_tpm_rev Cd14+MoEndothelialProgenitorCellsD2- bigWig CD14+ monocyte derived endothelial progenitor cells, donor2_CNhs11897_11310-117C5_reverse 1 2090 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11310-117C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor2.CNhs11897.11310-117C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor2_CNhs11897_11310-117C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11310-117C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoEndothelialProgenitorCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor2_CNhs11897_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11310-117C5\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor2_CNhs11897_ctss_rev Cd14+MoEndothelialProgenitorCellsD2- bigWig CD14+ monocyte derived endothelial progenitor cells, donor2_CNhs11897_11310-117C5_reverse 0 2090 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11310-117C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor2.CNhs11897.11310-117C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor2_CNhs11897_11310-117C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11310-117C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoEndothelialProgenitorCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor2_CNhs11897_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11310-117C5\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor3_CNhs11904_tpm_fwd Cd14+MoEndothelialProgenitorCellsD3+ bigWig CD14+ monocyte derived endothelial progenitor cells, donor3_CNhs11904_11386-118B9_forward 1 2091 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11386-118B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor3.CNhs11904.11386-118B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor3_CNhs11904_11386-118B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11386-118B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoEndothelialProgenitorCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor3_CNhs11904_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11386-118B9\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor3_CNhs11904_ctss_fwd Cd14+MoEndothelialProgenitorCellsD3+ bigWig CD14+ monocyte derived endothelial progenitor cells, donor3_CNhs11904_11386-118B9_forward 0 2091 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11386-118B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor3.CNhs11904.11386-118B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor3_CNhs11904_11386-118B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11386-118B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoEndothelialProgenitorCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor3_CNhs11904_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11386-118B9\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor3_CNhs11904_tpm_rev Cd14+MoEndothelialProgenitorCellsD3- bigWig CD14+ monocyte derived endothelial progenitor cells, donor3_CNhs11904_11386-118B9_reverse 1 2092 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11386-118B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor3.CNhs11904.11386-118B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor3_CNhs11904_11386-118B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11386-118B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoEndothelialProgenitorCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor3_CNhs11904_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11386-118B9\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor3_CNhs11904_ctss_rev Cd14+MoEndothelialProgenitorCellsD3- bigWig CD14+ monocyte derived endothelial progenitor cells, donor3_CNhs11904_11386-118B9_reverse 0 2092 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11386-118B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor3.CNhs11904.11386-118B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor3_CNhs11904_11386-118B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11386-118B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoEndothelialProgenitorCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor3_CNhs11904_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11386-118B9\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor1_CNhs13468_tpm_fwd Cd14+MoMockTreatedD1+ bigWig CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_forward 1 2093 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor1.CNhs13468.11863-125A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11863-125A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoMockTreatedD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesMockTreatedDonor1_CNhs13468_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor1_CNhs13468_ctss_fwd Cd14+MoMockTreatedD1+ bigWig CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_forward 0 2093 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor1.CNhs13468.11863-125A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11863-125A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoMockTreatedD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesMockTreatedDonor1_CNhs13468_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor1_CNhs13468_tpm_rev Cd14+MoMockTreatedD1- bigWig CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_reverse 1 2094 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor1.CNhs13468.11863-125A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11863-125A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoMockTreatedD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesMockTreatedDonor1_CNhs13468_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor1_CNhs13468_ctss_rev Cd14+MoMockTreatedD1- bigWig CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_reverse 0 2094 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor1.CNhs13468.11863-125A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11863-125A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoMockTreatedD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesMockTreatedDonor1_CNhs13468_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor2_CNhs13484_tpm_fwd Cd14+MoMockTreatedD2+ bigWig CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_forward 1 2095 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor2.CNhs13484.11873-125C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11873-125C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoMockTreatedD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesMockTreatedDonor2_CNhs13484_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor2_CNhs13484_ctss_fwd Cd14+MoMockTreatedD2+ bigWig CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_forward 0 2095 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor2.CNhs13484.11873-125C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11873-125C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoMockTreatedD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesMockTreatedDonor2_CNhs13484_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor2_CNhs13484_tpm_rev Cd14+MoMockTreatedD2- bigWig CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_reverse 1 2096 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor2.CNhs13484.11873-125C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11873-125C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoMockTreatedD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesMockTreatedDonor2_CNhs13484_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor2_CNhs13484_ctss_rev Cd14+MoMockTreatedD2- bigWig CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_reverse 0 2096 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor2.CNhs13484.11873-125C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11873-125C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoMockTreatedD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesMockTreatedDonor2_CNhs13484_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor3_CNhs13491_tpm_fwd Cd14+MoMockTreatedD3+ bigWig CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_forward 1 2097 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor3.CNhs13491.11883-125D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11883-125D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoMockTreatedD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesMockTreatedDonor3_CNhs13491_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor3_CNhs13491_ctss_fwd Cd14+MoMockTreatedD3+ bigWig CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_forward 0 2097 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor3.CNhs13491.11883-125D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11883-125D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoMockTreatedD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesMockTreatedDonor3_CNhs13491_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor3_CNhs13491_tpm_rev Cd14+MoMockTreatedD3- bigWig CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_reverse 1 2098 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor3.CNhs13491.11883-125D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11883-125D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoMockTreatedD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesMockTreatedDonor3_CNhs13491_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor3_CNhs13491_ctss_rev Cd14+MoMockTreatedD3- bigWig CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_reverse 0 2098 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor3.CNhs13491.11883-125D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11883-125D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoMockTreatedD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesMockTreatedDonor3_CNhs13491_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_tpm_fwd Cd14+MoW/B-glucanD1+ bigWig CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_forward 1 2099 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor1.CNhs13474.11869-125B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11869-125B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/B-glucanD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_ctss_fwd Cd14+MoW/B-glucanD1+ bigWig CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_forward 0 2099 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor1.CNhs13474.11869-125B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11869-125B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/B-glucanD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_tpm_rev Cd14+MoW/B-glucanD1- bigWig CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_reverse 1 2100 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor1.CNhs13474.11869-125B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11869-125B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/B-glucanD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_ctss_rev Cd14+MoW/B-glucanD1- bigWig CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_reverse 0 2100 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor1.CNhs13474.11869-125B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11869-125B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/B-glucanD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_tpm_fwd Cd14+MoW/B-glucanD2+ bigWig CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_forward 1 2101 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor2.CNhs13489.11879-125C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11879-125C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/B-glucanD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_ctss_fwd Cd14+MoW/B-glucanD2+ bigWig CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_forward 0 2101 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor2.CNhs13489.11879-125C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11879-125C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/B-glucanD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_tpm_rev Cd14+MoW/B-glucanD2- bigWig CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_reverse 1 2102 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor2.CNhs13489.11879-125C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11879-125C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/B-glucanD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_ctss_rev Cd14+MoW/B-glucanD2- bigWig CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_reverse 0 2102 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor2.CNhs13489.11879-125C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11879-125C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/B-glucanD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_tpm_fwd Cd14+MoW/B-glucanD3+ bigWig CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_forward 1 2103 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor3.CNhs13495.11889-125D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11889-125D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/B-glucanD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_ctss_fwd Cd14+MoW/B-glucanD3+ bigWig CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_forward 0 2103 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor3.CNhs13495.11889-125D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11889-125D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/B-glucanD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_tpm_rev Cd14+MoW/B-glucanD3- bigWig CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_reverse 1 2104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor3.CNhs13495.11889-125D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11889-125D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/B-glucanD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_ctss_rev Cd14+MoW/B-glucanD3- bigWig CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_reverse 0 2104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor3.CNhs13495.11889-125D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11889-125D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/B-glucanD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor1_CNhs13465_tpm_fwd Cd14+MoW/BcgD1+ bigWig CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_forward 1 2105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor1.CNhs13465.11860-125A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11860-125A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/BcgD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBCGDonor1_CNhs13465_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor1_CNhs13465_ctss_fwd Cd14+MoW/BcgD1+ bigWig CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_forward 0 2105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor1.CNhs13465.11860-125A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11860-125A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/BcgD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBCGDonor1_CNhs13465_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor1_CNhs13465_tpm_rev Cd14+MoW/BcgD1- bigWig CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_reverse 1 2106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor1.CNhs13465.11860-125A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11860-125A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/BcgD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBCGDonor1_CNhs13465_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor1_CNhs13465_ctss_rev Cd14+MoW/BcgD1- bigWig CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_reverse 0 2106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor1.CNhs13465.11860-125A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11860-125A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/BcgD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBCGDonor1_CNhs13465_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor2_CNhs13475_tpm_fwd Cd14+MoW/BcgD2+ bigWig CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_forward 1 2107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor2.CNhs13475.11870-125B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11870-125B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/BcgD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBCGDonor2_CNhs13475_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor2_CNhs13475_ctss_fwd Cd14+MoW/BcgD2+ bigWig CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_forward 0 2107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor2.CNhs13475.11870-125B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11870-125B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/BcgD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBCGDonor2_CNhs13475_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor2_CNhs13475_tpm_rev Cd14+MoW/BcgD2- bigWig CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_reverse 1 2108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor2.CNhs13475.11870-125B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11870-125B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/BcgD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBCGDonor2_CNhs13475_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor2_CNhs13475_ctss_rev Cd14+MoW/BcgD2- bigWig CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_reverse 0 2108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor2.CNhs13475.11870-125B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11870-125B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/BcgD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBCGDonor2_CNhs13475_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor3_CNhs13543_tpm_fwd Cd14+MoW/BcgD3+ bigWig CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_forward 1 2109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor3.CNhs13543.11880-125C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11880-125C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/BcgD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBCGDonor3_CNhs13543_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor3_CNhs13543_ctss_fwd Cd14+MoW/BcgD3+ bigWig CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_forward 0 2109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor3.CNhs13543.11880-125C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11880-125C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/BcgD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBCGDonor3_CNhs13543_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor3_CNhs13543_tpm_rev Cd14+MoW/BcgD3- bigWig CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_reverse 1 2110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor3.CNhs13543.11880-125C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11880-125C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/BcgD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBCGDonor3_CNhs13543_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor3_CNhs13543_ctss_rev Cd14+MoW/BcgD3- bigWig CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_reverse 0 2110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor3.CNhs13543.11880-125C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11880-125C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/BcgD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBCGDonor3_CNhs13543_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_tpm_fwd Cd14+MoW/CandidaD1+ bigWig CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_forward 1 2111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor1.CNhs13473.11868-125B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11868-125B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CandidaD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_ctss_fwd Cd14+MoW/CandidaD1+ bigWig CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_forward 0 2111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor1.CNhs13473.11868-125B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11868-125B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CandidaD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_tpm_rev Cd14+MoW/CandidaD1- bigWig CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_reverse 1 2112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor1.CNhs13473.11868-125B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11868-125B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CandidaD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_ctss_rev Cd14+MoW/CandidaD1- bigWig CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_reverse 0 2112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor1.CNhs13473.11868-125B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11868-125B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CandidaD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_tpm_fwd Cd14+MoW/CandidaD2+ bigWig CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_forward 1 2113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor2.CNhs13488.11878-125C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11878-125C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CandidaD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_ctss_fwd Cd14+MoW/CandidaD2+ bigWig CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_forward 0 2113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor2.CNhs13488.11878-125C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11878-125C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CandidaD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_tpm_rev Cd14+MoW/CandidaD2- bigWig CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_reverse 1 2114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor2.CNhs13488.11878-125C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11878-125C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CandidaD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_ctss_rev Cd14+MoW/CandidaD2- bigWig CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_reverse 0 2114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor2.CNhs13488.11878-125C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11878-125C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CandidaD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_tpm_fwd Cd14+MoW/CandidaD3+ bigWig CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_forward 1 2115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor3.CNhs13494.11888-125D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11888-125D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CandidaD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_ctss_fwd Cd14+MoW/CandidaD3+ bigWig CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_forward 0 2115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor3.CNhs13494.11888-125D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11888-125D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CandidaD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_tpm_rev Cd14+MoW/CandidaD3- bigWig CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_reverse 1 2116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor3.CNhs13494.11888-125D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11888-125D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CandidaD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_ctss_rev Cd14+MoW/CandidaD3- bigWig CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_reverse 0 2116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor3.CNhs13494.11888-125D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11888-125D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CandidaD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_tpm_fwd Cd14+MoW/CryptococcusD1+ bigWig CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_forward 1 2117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor1.CNhs13472.11867-125B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11867-125B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CryptococcusD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_ctss_fwd Cd14+MoW/CryptococcusD1+ bigWig CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_forward 0 2117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor1.CNhs13472.11867-125B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11867-125B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CryptococcusD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_tpm_rev Cd14+MoW/CryptococcusD1- bigWig CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_reverse 1 2118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor1.CNhs13472.11867-125B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11867-125B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CryptococcusD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_ctss_rev Cd14+MoW/CryptococcusD1- bigWig CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_reverse 0 2118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor1.CNhs13472.11867-125B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11867-125B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CryptococcusD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_tpm_fwd Cd14+MoW/CryptococcusD2+ bigWig CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_forward 1 2119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor2.CNhs13487.11877-125C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11877-125C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CryptococcusD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_ctss_fwd Cd14+MoW/CryptococcusD2+ bigWig CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_forward 0 2119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor2.CNhs13487.11877-125C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11877-125C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CryptococcusD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_tpm_rev Cd14+MoW/CryptococcusD2- bigWig CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_reverse 1 2120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor2.CNhs13487.11877-125C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11877-125C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CryptococcusD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_ctss_rev Cd14+MoW/CryptococcusD2- bigWig CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_reverse 0 2120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor2.CNhs13487.11877-125C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11877-125C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CryptococcusD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_tpm_fwd Cd14+MoW/CryptococcusD3+ bigWig CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_forward 1 2121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor3.CNhs13546.11887-125D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11887-125D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CryptococcusD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_ctss_fwd Cd14+MoW/CryptococcusD3+ bigWig CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_forward 0 2121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor3.CNhs13546.11887-125D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11887-125D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CryptococcusD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_tpm_rev Cd14+MoW/CryptococcusD3- bigWig CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_reverse 1 2122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor3.CNhs13546.11887-125D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11887-125D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CryptococcusD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_ctss_rev Cd14+MoW/CryptococcusD3- bigWig CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_reverse 0 2122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor3.CNhs13546.11887-125D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11887-125D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CryptococcusD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_tpm_fwd Cd14+MoW/GroupAStreptococciD1+ bigWig CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_forward 1 2123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor1.CNhs13469.11864-125B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11864-125B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/GroupAStreptococciD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_ctss_fwd Cd14+MoW/GroupAStreptococciD1+ bigWig CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_forward 0 2123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor1.CNhs13469.11864-125B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11864-125B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/GroupAStreptococciD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_tpm_rev Cd14+MoW/GroupAStreptococciD1- bigWig CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_reverse 1 2124 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor1.CNhs13469.11864-125B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11864-125B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/GroupAStreptococciD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_ctss_rev Cd14+MoW/GroupAStreptococciD1- bigWig CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_reverse 0 2124 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor1.CNhs13469.11864-125B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11864-125B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/GroupAStreptococciD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_tpm_fwd Cd14+MoW/GroupAStreptococciD2+ bigWig CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_forward 1 2125 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor2.CNhs13532.11874-125C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11874-125C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/GroupAStreptococciD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_ctss_fwd Cd14+MoW/GroupAStreptococciD2+ bigWig CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_forward 0 2125 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor2.CNhs13532.11874-125C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11874-125C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/GroupAStreptococciD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_tpm_rev Cd14+MoW/GroupAStreptococciD2- bigWig CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_reverse 1 2126 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor2.CNhs13532.11874-125C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11874-125C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/GroupAStreptococciD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_ctss_rev Cd14+MoW/GroupAStreptococciD2- bigWig CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_reverse 0 2126 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor2.CNhs13532.11874-125C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11874-125C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/GroupAStreptococciD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_tpm_fwd Cd14+MoW/GroupAStreptococciD3+ bigWig CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_forward 1 2127 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor3.CNhs13492.11884-125D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11884-125D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/GroupAStreptococciD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_ctss_fwd Cd14+MoW/GroupAStreptococciD3+ bigWig CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_forward 0 2127 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor3.CNhs13492.11884-125D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11884-125D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/GroupAStreptococciD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_tpm_rev Cd14+MoW/GroupAStreptococciD3- bigWig CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_reverse 1 2128 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor3.CNhs13492.11884-125D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11884-125D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/GroupAStreptococciD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_ctss_rev Cd14+MoW/GroupAStreptococciD3- bigWig CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_reverse 0 2128 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor3.CNhs13492.11884-125D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11884-125D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/GroupAStreptococciD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_tpm_fwd Cd14+MoW/Ifn+N-hexaneD1+ bigWig CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_forward 1 2129 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor1.CNhs13466.11861-125A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11861-125A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/Ifn+N-hexaneD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_ctss_fwd Cd14+MoW/Ifn+N-hexaneD1+ bigWig CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_forward 0 2129 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor1.CNhs13466.11861-125A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11861-125A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/Ifn+N-hexaneD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_tpm_rev Cd14+MoW/Ifn+N-hexaneD1- bigWig CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_reverse 1 2130 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor1.CNhs13466.11861-125A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11861-125A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/Ifn+N-hexaneD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_ctss_rev Cd14+MoW/Ifn+N-hexaneD1- bigWig CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_reverse 0 2130 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor1.CNhs13466.11861-125A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11861-125A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/Ifn+N-hexaneD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_tpm_fwd Cd14+MoW/Ifn+N-hexaneD2+ bigWig CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_forward 1 2131 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor2.CNhs13476.11871-125B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11871-125B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/Ifn+N-hexaneD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_ctss_fwd Cd14+MoW/Ifn+N-hexaneD2+ bigWig CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_forward 0 2131 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor2.CNhs13476.11871-125B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11871-125B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/Ifn+N-hexaneD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_tpm_rev Cd14+MoW/Ifn+N-hexaneD2- bigWig CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_reverse 1 2132 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor2.CNhs13476.11871-125B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11871-125B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/Ifn+N-hexaneD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_ctss_rev Cd14+MoW/Ifn+N-hexaneD2- bigWig CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_reverse 0 2132 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor2.CNhs13476.11871-125B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11871-125B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/Ifn+N-hexaneD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_tpm_fwd Cd14+MoW/Ifn+N-hexaneD3+ bigWig CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_forward 1 2133 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor3.CNhs13490.11881-125C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11881-125C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/Ifn+N-hexaneD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_ctss_fwd Cd14+MoW/Ifn+N-hexaneD3+ bigWig CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_forward 0 2133 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor3.CNhs13490.11881-125C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11881-125C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/Ifn+N-hexaneD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_tpm_rev Cd14+MoW/Ifn+N-hexaneD3- bigWig CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_reverse 1 2134 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor3.CNhs13490.11881-125C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11881-125C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/Ifn+N-hexaneD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_ctss_rev Cd14+MoW/Ifn+N-hexaneD3- bigWig CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_reverse 0 2134 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor3.CNhs13490.11881-125C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11881-125C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/Ifn+N-hexaneD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_tpm_fwd Cd14+MoW/LipopolysaccharideD1+ bigWig CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_forward 1 2135 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor1.CNhs13470.11865-125B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11865-125B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/LipopolysaccharideD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_ctss_fwd Cd14+MoW/LipopolysaccharideD1+ bigWig CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_forward 0 2135 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor1.CNhs13470.11865-125B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11865-125B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/LipopolysaccharideD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_tpm_rev Cd14+MoW/LipopolysaccharideD1- bigWig CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_reverse 1 2136 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor1.CNhs13470.11865-125B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11865-125B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/LipopolysaccharideD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_ctss_rev Cd14+MoW/LipopolysaccharideD1- bigWig CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_reverse 0 2136 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor1.CNhs13470.11865-125B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11865-125B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/LipopolysaccharideD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_tpm_fwd Cd14+MoW/LipopolysaccharideD2+ bigWig CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_forward 1 2137 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor2.CNhs13533.11875-125C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11875-125C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/LipopolysaccharideD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_ctss_fwd Cd14+MoW/LipopolysaccharideD2+ bigWig CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_forward 0 2137 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor2.CNhs13533.11875-125C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11875-125C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/LipopolysaccharideD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_tpm_rev Cd14+MoW/LipopolysaccharideD2- bigWig CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_reverse 1 2138 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor2.CNhs13533.11875-125C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11875-125C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/LipopolysaccharideD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_ctss_rev Cd14+MoW/LipopolysaccharideD2- bigWig CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_reverse 0 2138 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor2.CNhs13533.11875-125C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11875-125C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/LipopolysaccharideD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_tpm_fwd Cd14+MoW/LipopolysaccharideD3+ bigWig CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_forward 1 2139 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor3.CNhs13545.11885-125D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11885-125D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/LipopolysaccharideD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_ctss_fwd Cd14+MoW/LipopolysaccharideD3+ bigWig CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_forward 0 2139 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor3.CNhs13545.11885-125D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11885-125D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/LipopolysaccharideD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_tpm_rev Cd14+MoW/LipopolysaccharideD3- bigWig CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_reverse 1 2140 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor3.CNhs13545.11885-125D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11885-125D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/LipopolysaccharideD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_ctss_rev Cd14+MoW/LipopolysaccharideD3- bigWig CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_reverse 0 2140 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor3.CNhs13545.11885-125D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11885-125D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/LipopolysaccharideD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_tpm_fwd Cd14+MoW/SalmonellaD1+ bigWig CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_forward 1 2141 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor1.CNhs13471.11866-125B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11866-125B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/SalmonellaD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_ctss_fwd Cd14+MoW/SalmonellaD1+ bigWig CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_forward 0 2141 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor1.CNhs13471.11866-125B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11866-125B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/SalmonellaD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_tpm_rev Cd14+MoW/SalmonellaD1- bigWig CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_reverse 1 2142 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor1.CNhs13471.11866-125B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11866-125B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/SalmonellaD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_ctss_rev Cd14+MoW/SalmonellaD1- bigWig CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_reverse 0 2142 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor1.CNhs13471.11866-125B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11866-125B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/SalmonellaD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_tpm_fwd Cd14+MoW/SalmonellaD2+ bigWig CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_forward 1 2143 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor2.CNhs13485.11876-125C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11876-125C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/SalmonellaD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_ctss_fwd Cd14+MoW/SalmonellaD2+ bigWig CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_forward 0 2143 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor2.CNhs13485.11876-125C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11876-125C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/SalmonellaD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_tpm_rev Cd14+MoW/SalmonellaD2- bigWig CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_reverse 1 2144 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor2.CNhs13485.11876-125C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11876-125C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/SalmonellaD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_ctss_rev Cd14+MoW/SalmonellaD2- bigWig CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_reverse 0 2144 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor2.CNhs13485.11876-125C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11876-125C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/SalmonellaD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_tpm_fwd Cd14+MoW/SalmonellaD3+ bigWig CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_forward 1 2145 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor3.CNhs13493.11886-125D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11886-125D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/SalmonellaD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_ctss_fwd Cd14+MoW/SalmonellaD3+ bigWig CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_forward 0 2145 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor3.CNhs13493.11886-125D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11886-125D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/SalmonellaD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_tpm_rev Cd14+MoW/SalmonellaD3- bigWig CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_reverse 1 2146 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor3.CNhs13493.11886-125D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11886-125D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/SalmonellaD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_ctss_rev Cd14+MoW/SalmonellaD3- bigWig CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_reverse 0 2146 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor3.CNhs13493.11886-125D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11886-125D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/SalmonellaD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_tpm_fwd Cd14+MoW/TrehaloseDimycolateD1+ bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_forward 1 2147 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor1.CNhs13467.11862-125A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11862-125A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/TrehaloseDimycolateD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_ctss_fwd Cd14+MoW/TrehaloseDimycolateD1+ bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_forward 0 2147 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor1.CNhs13467.11862-125A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11862-125A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/TrehaloseDimycolateD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_tpm_rev Cd14+MoW/TrehaloseDimycolateD1- bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_reverse 1 2148 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor1.CNhs13467.11862-125A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11862-125A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/TrehaloseDimycolateD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_ctss_rev Cd14+MoW/TrehaloseDimycolateD1- bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_reverse 0 2148 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor1.CNhs13467.11862-125A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11862-125A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/TrehaloseDimycolateD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_tpm_fwd Cd14+MoW/TrehaloseDimycolateD2+ bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_forward 1 2149 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor2.CNhs13483.11872-125B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11872-125B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/TrehaloseDimycolateD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_ctss_fwd Cd14+MoW/TrehaloseDimycolateD2+ bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_forward 0 2149 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor2.CNhs13483.11872-125B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11872-125B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/TrehaloseDimycolateD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_tpm_rev Cd14+MoW/TrehaloseDimycolateD2- bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_reverse 1 2150 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor2.CNhs13483.11872-125B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11872-125B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/TrehaloseDimycolateD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_ctss_rev Cd14+MoW/TrehaloseDimycolateD2- bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_reverse 0 2150 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor2.CNhs13483.11872-125B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11872-125B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/TrehaloseDimycolateD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_tpm_fwd Cd14+MoW/TrehaloseDimycolateD3+ bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_forward 1 2151 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor3.CNhs13544.11882-125D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11882-125D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/TrehaloseDimycolateD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_ctss_fwd Cd14+MoW/TrehaloseDimycolateD3+ bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_forward 0 2151 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor3.CNhs13544.11882-125D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11882-125D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/TrehaloseDimycolateD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_tpm_rev Cd14+MoW/TrehaloseDimycolateD3- bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_reverse 1 2152 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor3.CNhs13544.11882-125D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11882-125D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/TrehaloseDimycolateD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_ctss_rev Cd14+MoW/TrehaloseDimycolateD3- bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_reverse 0 2152 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor3.CNhs13544.11882-125D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11882-125D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/TrehaloseDimycolateD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13207_tpm_fwd Cd14-cd16+MonocytesD2+ bigWig CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_forward 1 2153 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor2.CNhs13207.11800-124C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11800-124C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14-cd16+MonocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor2_CNhs13207_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13207_ctss_fwd Cd14-cd16+MonocytesD2+ bigWig CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_forward 0 2153 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor2.CNhs13207.11800-124C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11800-124C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14-cd16+MonocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor2_CNhs13207_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13207_tpm_rev Cd14-cd16+MonocytesD2- bigWig CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_reverse 1 2154 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor2.CNhs13207.11800-124C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11800-124C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14-cd16+MonocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor2_CNhs13207_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13207_ctss_rev Cd14-cd16+MonocytesD2- bigWig CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_reverse 0 2154 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor2.CNhs13207.11800-124C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11800-124C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14-cd16+MonocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor2_CNhs13207_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13548_tpm_fwd Cd14-cd16+MonocytesD3+ bigWig CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_forward 1 2155 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor3.CNhs13548.11911-125G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11911-125G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14-cd16+MonocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor3_CNhs13548_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13548_ctss_fwd Cd14-cd16+MonocytesD3+ bigWig CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_forward 0 2155 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor3.CNhs13548.11911-125G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11911-125G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14-cd16+MonocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor3_CNhs13548_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13548_tpm_rev Cd14-cd16+MonocytesD3- bigWig CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_reverse 1 2156 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor3.CNhs13548.11911-125G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11911-125G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14-cd16+MonocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor3_CNhs13548_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13548_ctss_rev Cd14-cd16+MonocytesD3- bigWig CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_reverse 0 2156 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor3.CNhs13548.11911-125G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11911-125G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14-cd16+MonocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor3_CNhs13548_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3\ urlLabel FANTOM5 Details:\ CD19BCellsDonor1_CNhs12343_tpm_fwd Cd19+BCellsD1+ bigWig CD19+ B Cells, donor1_CNhs12343_11544-120B5_forward 1 2157 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor1.CNhs12343.11544-120B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells, donor1_CNhs12343_11544-120B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11544-120B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD19BCellsDonor1_CNhs12343_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5\ urlLabel FANTOM5 Details:\ CD19BCellsDonor1_CNhs12343_ctss_fwd Cd19+BCellsD1+ bigWig CD19+ B Cells, donor1_CNhs12343_11544-120B5_forward 0 2157 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor1.CNhs12343.11544-120B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells, donor1_CNhs12343_11544-120B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11544-120B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD19BCellsDonor1_CNhs12343_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5\ urlLabel FANTOM5 Details:\ CD19BCellsDonor1_CNhs12343_tpm_rev Cd19+BCellsD1- bigWig CD19+ B Cells, donor1_CNhs12343_11544-120B5_reverse 1 2158 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor1.CNhs12343.11544-120B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells, donor1_CNhs12343_11544-120B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11544-120B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD19BCellsDonor1_CNhs12343_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5\ urlLabel FANTOM5 Details:\ CD19BCellsDonor1_CNhs12343_ctss_rev Cd19+BCellsD1- bigWig CD19+ B Cells, donor1_CNhs12343_11544-120B5_reverse 0 2158 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor1.CNhs12343.11544-120B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells, donor1_CNhs12343_11544-120B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11544-120B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD19BCellsDonor1_CNhs12343_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5\ urlLabel FANTOM5 Details:\ CD19BCellsDonor2_CNhs12352_tpm_fwd Cd19+BCellsD2+ bigWig CD19+ B Cells, donor2_CNhs12352_11624-122B4_forward 1 2159 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor2.CNhs12352.11624-122B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells, donor2_CNhs12352_11624-122B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11624-122B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD19BCellsDonor2_CNhs12352_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4\ urlLabel FANTOM5 Details:\ CD19BCellsDonor2_CNhs12352_ctss_fwd Cd19+BCellsD2+ bigWig CD19+ B Cells, donor2_CNhs12352_11624-122B4_forward 0 2159 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor2.CNhs12352.11624-122B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells, donor2_CNhs12352_11624-122B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11624-122B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD19BCellsDonor2_CNhs12352_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4\ urlLabel FANTOM5 Details:\ CD19BCellsDonor2_CNhs12352_tpm_rev Cd19+BCellsD2- bigWig CD19+ B Cells, donor2_CNhs12352_11624-122B4_reverse 1 2160 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor2.CNhs12352.11624-122B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells, donor2_CNhs12352_11624-122B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11624-122B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD19BCellsDonor2_CNhs12352_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4\ urlLabel FANTOM5 Details:\ CD19BCellsDonor2_CNhs12352_ctss_rev Cd19+BCellsD2- bigWig CD19+ B Cells, donor2_CNhs12352_11624-122B4_reverse 0 2160 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor2.CNhs12352.11624-122B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells, donor2_CNhs12352_11624-122B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11624-122B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD19BCellsDonor2_CNhs12352_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4\ urlLabel FANTOM5 Details:\ CD19BCellsDonor3_CNhs12354_tpm_fwd Cd19+BCellsD3+ bigWig CD19+ B Cells, donor3_CNhs12354_11705-123B4_forward 1 2161 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor3.CNhs12354.11705-123B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells, donor3_CNhs12354_11705-123B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11705-123B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD19BCellsDonor3_CNhs12354_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4\ urlLabel FANTOM5 Details:\ CD19BCellsDonor3_CNhs12354_ctss_fwd Cd19+BCellsD3+ bigWig CD19+ B Cells, donor3_CNhs12354_11705-123B4_forward 0 2161 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor3.CNhs12354.11705-123B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells, donor3_CNhs12354_11705-123B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11705-123B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD19BCellsDonor3_CNhs12354_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4\ urlLabel FANTOM5 Details:\ CD19BCellsDonor3_CNhs12354_tpm_rev Cd19+BCellsD3- bigWig CD19+ B Cells, donor3_CNhs12354_11705-123B4_reverse 1 2162 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor3.CNhs12354.11705-123B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells, donor3_CNhs12354_11705-123B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11705-123B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD19BCellsDonor3_CNhs12354_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4\ urlLabel FANTOM5 Details:\ CD19BCellsDonor3_CNhs12354_ctss_rev Cd19+BCellsD3- bigWig CD19+ B Cells, donor3_CNhs12354_11705-123B4_reverse 0 2162 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor3.CNhs12354.11705-123B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells, donor3_CNhs12354_11705-123B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11705-123B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD19BCellsDonor3_CNhs12354_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4\ urlLabel FANTOM5 Details:\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_tpm_fwd Cd34+StemCellsAdultBoneMarrowD1Tr1+ bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_forward 1 2163 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep1.CNhs12588.12225-129F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_ctss_fwd Cd34+StemCellsAdultBoneMarrowD1Tr1+ bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_forward 0 2163 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep1.CNhs12588.12225-129F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_tpm_rev Cd34+StemCellsAdultBoneMarrowD1Tr1- bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_reverse 1 2164 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep1.CNhs12588.12225-129F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_ctss_rev Cd34+StemCellsAdultBoneMarrowD1Tr1- bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_reverse 0 2164 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep1.CNhs12588.12225-129F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_tpm_fwd Cd34ErythrocyteBr1+ bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_forward 1 2165 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep1.CNhs13552.11931-125I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11931-125I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34ErythrocyteBr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5\ urlLabel FANTOM5 Details:\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_ctss_fwd Cd34ErythrocyteBr1+ bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_forward 0 2165 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep1.CNhs13552.11931-125I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11931-125I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34ErythrocyteBr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5\ urlLabel FANTOM5 Details:\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_tpm_rev Cd34ErythrocyteBr1- bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_reverse 1 2166 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep1.CNhs13552.11931-125I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11931-125I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34ErythrocyteBr1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5\ urlLabel FANTOM5 Details:\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_ctss_rev Cd34ErythrocyteBr1- bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_reverse 0 2166 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep1.CNhs13552.11931-125I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11931-125I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34ErythrocyteBr1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5\ urlLabel FANTOM5 Details:\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_tpm_fwd Cd34ErythrocyteBr2+ bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_forward 1 2167 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep2.CNhs13553.11932-125I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11932-125I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34ErythrocyteBr2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6\ urlLabel FANTOM5 Details:\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_ctss_fwd Cd34ErythrocyteBr2+ bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_forward 0 2167 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep2.CNhs13553.11932-125I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11932-125I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34ErythrocyteBr2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6\ urlLabel FANTOM5 Details:\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_tpm_rev Cd34ErythrocyteBr2- bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_reverse 1 2168 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep2.CNhs13553.11932-125I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11932-125I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34ErythrocyteBr2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6\ urlLabel FANTOM5 Details:\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_ctss_rev Cd34ErythrocyteBr2- bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_reverse 0 2168 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep2.CNhs13553.11932-125I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11932-125I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34ErythrocyteBr2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_tpm_fwd Cd4+cd25+cd45ra+D3+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_forward 1 2169 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor3.CNhs13513.11907-125F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11907-125F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_ctss_fwd Cd4+cd25+cd45ra+D3+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_forward 0 2169 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor3.CNhs13513.11907-125F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11907-125F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_tpm_rev Cd4+cd25+cd45ra+D3- bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_reverse 1 2170 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor3.CNhs13513.11907-125F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11907-125F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_ctss_rev Cd4+cd25+cd45ra+D3- bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_reverse 0 2170 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor3.CNhs13513.11907-125F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11907-125F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_tpm_fwd Cd4+cd25+cd45ra+ExpdD1+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_forward 1 2171 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13203.11793-124C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11793-124C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_ctss_fwd Cd4+cd25+cd45ra+ExpdD1+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_forward 0 2171 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13203.11793-124C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11793-124C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_tpm_rev Cd4+cd25+cd45ra+ExpdD1- bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_reverse 1 2172 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13203.11793-124C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11793-124C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_ctss_rev Cd4+cd25+cd45ra+ExpdD1- bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_reverse 0 2172 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13203.11793-124C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11793-124C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_tpm_fwd Cd4+cd25+cd45ra+ExpdD2+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_forward 1 2173 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13918.11915-125G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11915-125G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_ctss_fwd Cd4+cd25+cd45ra+ExpdD2+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_forward 0 2173 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13918.11915-125G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11915-125G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_tpm_rev Cd4+cd25+cd45ra+ExpdD2- bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_reverse 1 2174 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13918.11915-125G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11915-125G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_ctss_rev Cd4+cd25+cd45ra+ExpdD2- bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_reverse 0 2174 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13918.11915-125G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11915-125G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_tpm_fwd Cd4+cd25+cd45ra+ExpdD3+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_forward 1 2175 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13919.11919-125H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11919-125H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_ctss_fwd Cd4+cd25+cd45ra+ExpdD3+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_forward 0 2175 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13919.11919-125H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11919-125H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_tpm_rev Cd4+cd25+cd45ra+ExpdD3- bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_reverse 1 2176 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13919.11919-125H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11919-125H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_ctss_rev Cd4+cd25+cd45ra+ExpdD3- bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_reverse 0 2176 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13919.11919-125H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11919-125H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_tpm_fwd Cd4+cd25+cd45ra-D1+ bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_forward 1 2177 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor1.CNhs13195.11782-124A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11782-124A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-D1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_ctss_fwd Cd4+cd25+cd45ra-D1+ bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_forward 0 2177 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor1.CNhs13195.11782-124A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11782-124A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-D1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_tpm_rev Cd4+cd25+cd45ra-D1- bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_reverse 1 2178 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor1.CNhs13195.11782-124A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11782-124A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-D1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_ctss_rev Cd4+cd25+cd45ra-D1- bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_reverse 0 2178 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor1.CNhs13195.11782-124A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11782-124A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-D1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_tpm_fwd Cd4+cd25+cd45ra-D2+ bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_forward 1 2179 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor2.CNhs13206.11797-124C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11797-124C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-D2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_ctss_fwd Cd4+cd25+cd45ra-D2+ bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_forward 0 2179 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor2.CNhs13206.11797-124C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11797-124C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-D2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_tpm_rev Cd4+cd25+cd45ra-D2- bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_reverse 1 2180 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor2.CNhs13206.11797-124C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11797-124C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-D2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_ctss_rev Cd4+cd25+cd45ra-D2- bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_reverse 0 2180 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor2.CNhs13206.11797-124C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11797-124C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-D2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_tpm_fwd Cd4+cd25+cd45ra-D3+ bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_forward 1 2181 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor3.CNhs13538.11908-125F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11908-125F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_ctss_fwd Cd4+cd25+cd45ra-D3+ bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_forward 0 2181 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor3.CNhs13538.11908-125F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11908-125F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_tpm_rev Cd4+cd25+cd45ra-D3- bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_reverse 1 2182 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor3.CNhs13538.11908-125F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11908-125F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_ctss_rev Cd4+cd25+cd45ra-D3- bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_reverse 0 2182 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor3.CNhs13538.11908-125F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11908-125F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_tpm_fwd Cd4+cd25+cd45ra-ExpdD1+ bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_forward 1 2183 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13204.11794-124C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11794-124C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_ctss_fwd Cd4+cd25+cd45ra-ExpdD1+ bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_forward 0 2183 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13204.11794-124C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11794-124C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_tpm_rev Cd4+cd25+cd45ra-ExpdD1- bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_reverse 1 2184 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13204.11794-124C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11794-124C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_ctss_rev Cd4+cd25+cd45ra-ExpdD1- bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_reverse 0 2184 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13204.11794-124C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11794-124C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_tpm_fwd Cd4+cd25+cd45ra-ExpdD2+ bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_forward 1 2185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13811.11916-125G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11916-125G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_ctss_fwd Cd4+cd25+cd45ra-ExpdD2+ bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_forward 0 2185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13811.11916-125G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11916-125G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_tpm_rev Cd4+cd25+cd45ra-ExpdD2- bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_reverse 1 2186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13811.11916-125G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11916-125G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_ctss_rev Cd4+cd25+cd45ra-ExpdD2- bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_reverse 0 2186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13811.11916-125G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11916-125G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_tpm_fwd Cd4+cd25+cd45ra-ExpdD3+ bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_forward 1 2187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13812.11920-125H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11920-125H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_ctss_fwd Cd4+cd25+cd45ra-ExpdD3+ bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_forward 0 2187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13812.11920-125H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11920-125H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_tpm_rev Cd4+cd25+cd45ra-ExpdD3- bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_reverse 1 2188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13812.11920-125H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11920-125H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_ctss_rev Cd4+cd25+cd45ra-ExpdD3- bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_reverse 0 2188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13812.11920-125H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11920-125H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_tpm_fwd Cd4+cd25-cd45ra+D1+ bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_forward 1 2189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor1.CNhs13223.11784-124B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11784-124B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+D1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_ctss_fwd Cd4+cd25-cd45ra+D1+ bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_forward 0 2189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor1.CNhs13223.11784-124B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11784-124B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+D1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_tpm_rev Cd4+cd25-cd45ra+D1- bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_reverse 1 2190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor1.CNhs13223.11784-124B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11784-124B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+D1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_ctss_rev Cd4+cd25-cd45ra+D1- bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_reverse 0 2190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor1.CNhs13223.11784-124B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11784-124B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+D1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_tpm_fwd Cd4+cd25-cd45ra+D2+ bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_forward 1 2191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor2.CNhs13205.11795-124C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11795-124C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+D2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_ctss_fwd Cd4+cd25-cd45ra+D2+ bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_forward 0 2191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor2.CNhs13205.11795-124C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11795-124C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+D2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_tpm_rev Cd4+cd25-cd45ra+D2- bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_reverse 1 2192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor2.CNhs13205.11795-124C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11795-124C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+D2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_ctss_rev Cd4+cd25-cd45ra+D2- bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_reverse 0 2192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor2.CNhs13205.11795-124C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11795-124C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+D2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_tpm_fwd Cd4+cd25-cd45ra+D3+ bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_forward 1 2193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor3.CNhs13512.11906-125F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11906-125F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_ctss_fwd Cd4+cd25-cd45ra+D3+ bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_forward 0 2193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor3.CNhs13512.11906-125F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11906-125F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_tpm_rev Cd4+cd25-cd45ra+D3- bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_reverse 1 2194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor3.CNhs13512.11906-125F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11906-125F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_ctss_rev Cd4+cd25-cd45ra+D3- bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_reverse 0 2194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor3.CNhs13512.11906-125F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11906-125F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_tpm_fwd Cd4+cd25-cd45ra+ExpdD1+ bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_forward 1 2195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13202.11791-124B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11791-124B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_ctss_fwd Cd4+cd25-cd45ra+ExpdD1+ bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_forward 0 2195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13202.11791-124B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11791-124B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_tpm_rev Cd4+cd25-cd45ra+ExpdD1- bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_reverse 1 2196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13202.11791-124B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11791-124B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_ctss_rev Cd4+cd25-cd45ra+ExpdD1- bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_reverse 0 2196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13202.11791-124B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11791-124B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_tpm_fwd Cd4+cd25-cd45ra+ExpdD2+ bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_forward 1 2197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13813.11913-125G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11913-125G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_ctss_fwd Cd4+cd25-cd45ra+ExpdD2+ bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_forward 0 2197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13813.11913-125G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11913-125G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_tpm_rev Cd4+cd25-cd45ra+ExpdD2- bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_reverse 1 2198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13813.11913-125G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11913-125G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_ctss_rev Cd4+cd25-cd45ra+ExpdD2- bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_reverse 0 2198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13813.11913-125G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11913-125G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_tpm_fwd Cd4+cd25-cd45ra+ExpdD3+ bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_forward 1 2199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13814.11917-125G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11917-125G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_ctss_fwd Cd4+cd25-cd45ra+ExpdD3+ bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_forward 0 2199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13814.11917-125G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11917-125G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_tpm_rev Cd4+cd25-cd45ra+ExpdD3- bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_reverse 1 2200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13814.11917-125G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11917-125G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_ctss_rev Cd4+cd25-cd45ra+ExpdD3- bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_reverse 0 2200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13814.11917-125G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11917-125G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_tpm_fwd Cd4+cd25-cd45ra-D3+ bigWig CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_forward 1 2201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor3.CNhs13539.11909-125G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11909-125G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_ctss_fwd Cd4+cd25-cd45ra-D3+ bigWig CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_forward 0 2201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor3.CNhs13539.11909-125G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11909-125G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_tpm_rev Cd4+cd25-cd45ra-D3- bigWig CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_reverse 1 2202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor3.CNhs13539.11909-125G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11909-125G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_ctss_rev Cd4+cd25-cd45ra-D3- bigWig CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_reverse 0 2202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor3.CNhs13539.11909-125G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11909-125G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_tpm_fwd Cd4+cd25-cd45ra-ExpdD1+ bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_forward 1 2203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13215.11792-124C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11792-124C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_ctss_fwd Cd4+cd25-cd45ra-ExpdD1+ bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_forward 0 2203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13215.11792-124C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11792-124C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_tpm_rev Cd4+cd25-cd45ra-ExpdD1- bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_reverse 1 2204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13215.11792-124C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11792-124C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_ctss_rev Cd4+cd25-cd45ra-ExpdD1- bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_reverse 0 2204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13215.11792-124C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11792-124C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_tpm_fwd Cd4+cd25-cd45ra-ExpdD2+ bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_forward 1 2205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13920.11914-125G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11914-125G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_ctss_fwd Cd4+cd25-cd45ra-ExpdD2+ bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_forward 0 2205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13920.11914-125G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11914-125G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_tpm_rev Cd4+cd25-cd45ra-ExpdD2- bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_reverse 1 2206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13920.11914-125G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11914-125G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_ctss_rev Cd4+cd25-cd45ra-ExpdD2- bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_reverse 0 2206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13920.11914-125G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11914-125G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_tpm_fwd Cd4+cd25-cd45ra-ExpdD3+ bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_forward 1 2207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13921.11918-125H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11918-125H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_ctss_fwd Cd4+cd25-cd45ra-ExpdD3+ bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_forward 0 2207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13921.11918-125H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11918-125H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_tpm_rev Cd4+cd25-cd45ra-ExpdD3- bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_reverse 1 2208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13921.11918-125H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11918-125H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_ctss_rev Cd4+cd25-cd45ra-ExpdD3- bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_reverse 0 2208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13921.11918-125H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11918-125H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor1_CNhs10853_tpm_fwd Cd4+TCellsD1+ bigWig CD4+ T Cells, donor1_CNhs10853_11225-116C1_forward 1 2209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor1.CNhs10853.11225-116C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+ T Cells, donor1_CNhs10853_11225-116C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11225-116C1 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd4+TCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4TCellsDonor1_CNhs10853_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor1_CNhs10853_ctss_fwd Cd4+TCellsD1+ bigWig CD4+ T Cells, donor1_CNhs10853_11225-116C1_forward 0 2209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor1.CNhs10853.11225-116C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+ T Cells, donor1_CNhs10853_11225-116C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11225-116C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+TCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4TCellsDonor1_CNhs10853_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor1_CNhs10853_tpm_rev Cd4+TCellsD1- bigWig CD4+ T Cells, donor1_CNhs10853_11225-116C1_reverse 1 2210 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor1.CNhs10853.11225-116C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+ T Cells, donor1_CNhs10853_11225-116C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11225-116C1 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd4+TCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4TCellsDonor1_CNhs10853_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor1_CNhs10853_ctss_rev Cd4+TCellsD1- bigWig CD4+ T Cells, donor1_CNhs10853_11225-116C1_reverse 0 2210 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor1.CNhs10853.11225-116C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+ T Cells, donor1_CNhs10853_11225-116C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11225-116C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+TCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4TCellsDonor1_CNhs10853_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor2_CNhs11955_tpm_fwd Cd4+TCellsD2+ bigWig CD4+ T Cells, donor2_CNhs11955_11306-117C1_forward 1 2211 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor2.CNhs11955.11306-117C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+ T Cells, donor2_CNhs11955_11306-117C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11306-117C1 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd4+TCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4TCellsDonor2_CNhs11955_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor2_CNhs11955_ctss_fwd Cd4+TCellsD2+ bigWig CD4+ T Cells, donor2_CNhs11955_11306-117C1_forward 0 2211 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor2.CNhs11955.11306-117C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+ T Cells, donor2_CNhs11955_11306-117C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11306-117C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+TCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4TCellsDonor2_CNhs11955_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor2_CNhs11955_tpm_rev Cd4+TCellsD2- bigWig CD4+ T Cells, donor2_CNhs11955_11306-117C1_reverse 1 2212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor2.CNhs11955.11306-117C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+ T Cells, donor2_CNhs11955_11306-117C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11306-117C1 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd4+TCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4TCellsDonor2_CNhs11955_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor2_CNhs11955_ctss_rev Cd4+TCellsD2- bigWig CD4+ T Cells, donor2_CNhs11955_11306-117C1_reverse 0 2212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor2.CNhs11955.11306-117C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+ T Cells, donor2_CNhs11955_11306-117C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11306-117C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+TCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4TCellsDonor2_CNhs11955_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor3_CNhs11998_tpm_fwd Cd4+TCellsD3+ bigWig CD4+ T Cells, donor3_CNhs11998_11382-118B5_forward 1 2213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor3.CNhs11998.11382-118B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+ T Cells, donor3_CNhs11998_11382-118B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11382-118B5 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd4+TCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4TCellsDonor3_CNhs11998_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5\ urlLabel FANTOM5 Details:\ CD4TCellsDonor3_CNhs11998_ctss_fwd Cd4+TCellsD3+ bigWig CD4+ T Cells, donor3_CNhs11998_11382-118B5_forward 0 2213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor3.CNhs11998.11382-118B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+ T Cells, donor3_CNhs11998_11382-118B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11382-118B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+TCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4TCellsDonor3_CNhs11998_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5\ urlLabel FANTOM5 Details:\ CD4TCellsDonor3_CNhs11998_tpm_rev Cd4+TCellsD3- bigWig CD4+ T Cells, donor3_CNhs11998_11382-118B5_reverse 1 2214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor3.CNhs11998.11382-118B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+ T Cells, donor3_CNhs11998_11382-118B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11382-118B5 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd4+TCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4TCellsDonor3_CNhs11998_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5\ urlLabel FANTOM5 Details:\ CD4TCellsDonor3_CNhs11998_ctss_rev Cd4+TCellsD3- bigWig CD4+ T Cells, donor3_CNhs11998_11382-118B5_reverse 0 2214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor3.CNhs11998.11382-118B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+ T Cells, donor3_CNhs11998_11382-118B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11382-118B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+TCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4TCellsDonor3_CNhs11998_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5\ urlLabel FANTOM5 Details:\ CD8TCellsDonor1_CNhs10854_tpm_fwd Cd8+TCellsD1+ bigWig CD8+ T Cells, donor1_CNhs10854_11226-116C2_forward 1 2215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor1.CNhs10854.11226-116C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells, donor1_CNhs10854_11226-116C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11226-116C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD8TCellsDonor1_CNhs10854_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2\ urlLabel FANTOM5 Details:\ CD8TCellsDonor1_CNhs10854_ctss_fwd Cd8+TCellsD1+ bigWig CD8+ T Cells, donor1_CNhs10854_11226-116C2_forward 0 2215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor1.CNhs10854.11226-116C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells, donor1_CNhs10854_11226-116C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11226-116C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD8TCellsDonor1_CNhs10854_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2\ urlLabel FANTOM5 Details:\ CD8TCellsDonor1_CNhs10854_tpm_rev Cd8+TCellsD1- bigWig CD8+ T Cells, donor1_CNhs10854_11226-116C2_reverse 1 2216 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor1.CNhs10854.11226-116C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells, donor1_CNhs10854_11226-116C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11226-116C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD8TCellsDonor1_CNhs10854_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2\ urlLabel FANTOM5 Details:\ CD8TCellsDonor1_CNhs10854_ctss_rev Cd8+TCellsD1- bigWig CD8+ T Cells, donor1_CNhs10854_11226-116C2_reverse 0 2216 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor1.CNhs10854.11226-116C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells, donor1_CNhs10854_11226-116C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11226-116C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD8TCellsDonor1_CNhs10854_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2\ urlLabel FANTOM5 Details:\ CD8TCellsDonor2_CNhs11956_tpm_fwd Cd8+TCellsD2+ bigWig CD8+ T Cells, donor2_CNhs11956_11307-117C2_forward 1 2217 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor2.CNhs11956.11307-117C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells, donor2_CNhs11956_11307-117C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11307-117C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD8TCellsDonor2_CNhs11956_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2\ urlLabel FANTOM5 Details:\ CD8TCellsDonor2_CNhs11956_ctss_fwd Cd8+TCellsD2+ bigWig CD8+ T Cells, donor2_CNhs11956_11307-117C2_forward 0 2217 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor2.CNhs11956.11307-117C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells, donor2_CNhs11956_11307-117C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11307-117C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD8TCellsDonor2_CNhs11956_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2\ urlLabel FANTOM5 Details:\ CD8TCellsDonor2_CNhs11956_tpm_rev Cd8+TCellsD2- bigWig CD8+ T Cells, donor2_CNhs11956_11307-117C2_reverse 1 2218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor2.CNhs11956.11307-117C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells, donor2_CNhs11956_11307-117C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11307-117C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD8TCellsDonor2_CNhs11956_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2\ urlLabel FANTOM5 Details:\ CD8TCellsDonor2_CNhs11956_ctss_rev Cd8+TCellsD2- bigWig CD8+ T Cells, donor2_CNhs11956_11307-117C2_reverse 0 2218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor2.CNhs11956.11307-117C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells, donor2_CNhs11956_11307-117C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11307-117C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD8TCellsDonor2_CNhs11956_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2\ urlLabel FANTOM5 Details:\ CD8TCellsDonor3_CNhs11999_tpm_fwd Cd8+TCellsD3+ bigWig CD8+ T Cells, donor3_CNhs11999_11383-118B6_forward 1 2219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor3.CNhs11999.11383-118B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells, donor3_CNhs11999_11383-118B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11383-118B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD8TCellsDonor3_CNhs11999_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6\ urlLabel FANTOM5 Details:\ CD8TCellsDonor3_CNhs11999_ctss_fwd Cd8+TCellsD3+ bigWig CD8+ T Cells, donor3_CNhs11999_11383-118B6_forward 0 2219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor3.CNhs11999.11383-118B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells, donor3_CNhs11999_11383-118B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11383-118B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD8TCellsDonor3_CNhs11999_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6\ urlLabel FANTOM5 Details:\ CD8TCellsDonor3_CNhs11999_tpm_rev Cd8+TCellsD3- bigWig CD8+ T Cells, donor3_CNhs11999_11383-118B6_reverse 1 2220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor3.CNhs11999.11383-118B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells, donor3_CNhs11999_11383-118B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11383-118B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD8TCellsDonor3_CNhs11999_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6\ urlLabel FANTOM5 Details:\ CD8TCellsDonor3_CNhs11999_ctss_rev Cd8+TCellsD3- bigWig CD8+ T Cells, donor3_CNhs11999_11383-118B6_reverse 0 2220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor3.CNhs11999.11383-118B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells, donor3_CNhs11999_11383-118B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11383-118B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD8TCellsDonor3_CNhs11999_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor1_CNhs11923_tpm_fwd ChondrocyteDeDiffD1+ bigWig Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_forward 1 2221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor1.CNhs11923.11261-116G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11261-116G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteDeDiffD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteDeDiffDonor1_CNhs11923_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor1_CNhs11923_ctss_fwd ChondrocyteDeDiffD1+ bigWig Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_forward 0 2221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor1.CNhs11923.11261-116G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11261-116G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteDeDiffD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteDeDiffDonor1_CNhs11923_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor1_CNhs11923_tpm_rev ChondrocyteDeDiffD1- bigWig Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_reverse 1 2222 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor1.CNhs11923.11261-116G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11261-116G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteDeDiffD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteDeDiffDonor1_CNhs11923_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor1_CNhs11923_ctss_rev ChondrocyteDeDiffD1- bigWig Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_reverse 0 2222 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor1.CNhs11923.11261-116G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11261-116G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteDeDiffD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteDeDiffDonor1_CNhs11923_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor2_CNhs11372_tpm_fwd ChondrocyteDeDiffD2+ bigWig Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_forward 1 2223 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor2.CNhs11372.11338-117F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11338-117F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteDeDiffD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteDeDiffDonor2_CNhs11372_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor2_CNhs11372_ctss_fwd ChondrocyteDeDiffD2+ bigWig Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_forward 0 2223 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor2.CNhs11372.11338-117F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11338-117F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteDeDiffD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteDeDiffDonor2_CNhs11372_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor2_CNhs11372_tpm_rev ChondrocyteDeDiffD2- bigWig Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_reverse 1 2224 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor2.CNhs11372.11338-117F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11338-117F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteDeDiffD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteDeDiffDonor2_CNhs11372_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor2_CNhs11372_ctss_rev ChondrocyteDeDiffD2- bigWig Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_reverse 0 2224 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor2.CNhs11372.11338-117F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11338-117F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteDeDiffD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteDeDiffDonor2_CNhs11372_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor3_CNhs12020_tpm_fwd ChondrocyteDeDiffD3+ bigWig Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_forward 1 2225 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor3.CNhs12020.11410-118E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11410-118E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteDeDiffD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteDeDiffDonor3_CNhs12020_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor3_CNhs12020_ctss_fwd ChondrocyteDeDiffD3+ bigWig Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_forward 0 2225 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor3.CNhs12020.11410-118E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11410-118E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteDeDiffD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteDeDiffDonor3_CNhs12020_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor3_CNhs12020_tpm_rev ChondrocyteDeDiffD3- bigWig Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_reverse 1 2226 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor3.CNhs12020.11410-118E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11410-118E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteDeDiffD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteDeDiffDonor3_CNhs12020_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor3_CNhs12020_ctss_rev ChondrocyteDeDiffD3- bigWig Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_reverse 0 2226 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor3.CNhs12020.11410-118E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11410-118E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteDeDiffD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteDeDiffDonor3_CNhs12020_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6\ urlLabel FANTOM5 Details:\ ChondrocyteReDiffDonor2_CNhs11373_tpm_fwd ChondrocyteReDiffD2+ bigWig Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_forward 1 2227 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor2.CNhs11373.11339-117F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11339-117F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteReDiffD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteReDiffDonor2_CNhs11373_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7\ urlLabel FANTOM5 Details:\ ChondrocyteReDiffDonor2_CNhs11373_ctss_fwd ChondrocyteReDiffD2+ bigWig Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_forward 0 2227 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor2.CNhs11373.11339-117F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11339-117F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteReDiffD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteReDiffDonor2_CNhs11373_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7\ urlLabel FANTOM5 Details:\ ChondrocyteReDiffDonor2_CNhs11373_tpm_rev ChondrocyteReDiffD2- bigWig Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_reverse 1 2228 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor2.CNhs11373.11339-117F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11339-117F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteReDiffD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteReDiffDonor2_CNhs11373_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7\ urlLabel FANTOM5 Details:\ ChondrocyteReDiffDonor2_CNhs11373_ctss_rev ChondrocyteReDiffD2- bigWig Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_reverse 0 2228 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor2.CNhs11373.11339-117F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11339-117F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteReDiffD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteReDiffDonor2_CNhs11373_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7\ urlLabel FANTOM5 Details:\ ChondrocyteReDiffDonor3_CNhs12021_tpm_fwd ChondrocyteReDiffD3+ bigWig Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_forward 1 2229 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor3.CNhs12021.11411-118E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11411-118E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteReDiffD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteReDiffDonor3_CNhs12021_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7\ urlLabel FANTOM5 Details:\ ChondrocyteReDiffDonor3_CNhs12021_ctss_fwd ChondrocyteReDiffD3+ bigWig Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_forward 0 2229 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor3.CNhs12021.11411-118E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11411-118E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteReDiffD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteReDiffDonor3_CNhs12021_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7\ urlLabel FANTOM5 Details:\ ChondrocyteReDiffDonor3_CNhs12021_tpm_rev ChondrocyteReDiffD3- bigWig Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_reverse 1 2230 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor3.CNhs12021.11411-118E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11411-118E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteReDiffD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteReDiffDonor3_CNhs12021_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7\ urlLabel FANTOM5 Details:\ ChondrocyteReDiffDonor3_CNhs12021_ctss_rev ChondrocyteReDiffD3- bigWig Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_reverse 0 2230 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor3.CNhs12021.11411-118E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11411-118E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteReDiffD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteReDiffDonor3_CNhs12021_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor1_CNhs12504_tpm_fwd ChorionicMembraneCellsD1+ bigWig chorionic membrane cells, donor1_CNhs12504_12238-129G6_forward 1 2231 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor1.CNhs12504.12238-129G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel chorionic membrane cells, donor1_CNhs12504_12238-129G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12238-129G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChorionicMembraneCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChorionicMembraneCellsDonor1_CNhs12504_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor1_CNhs12504_ctss_fwd ChorionicMembraneCellsD1+ bigWig chorionic membrane cells, donor1_CNhs12504_12238-129G6_forward 0 2231 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor1.CNhs12504.12238-129G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel chorionic membrane cells, donor1_CNhs12504_12238-129G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12238-129G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChorionicMembraneCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChorionicMembraneCellsDonor1_CNhs12504_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor1_CNhs12504_tpm_rev ChorionicMembraneCellsD1- bigWig chorionic membrane cells, donor1_CNhs12504_12238-129G6_reverse 1 2232 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor1.CNhs12504.12238-129G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel chorionic membrane cells, donor1_CNhs12504_12238-129G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12238-129G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChorionicMembraneCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChorionicMembraneCellsDonor1_CNhs12504_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor1_CNhs12504_ctss_rev ChorionicMembraneCellsD1- bigWig chorionic membrane cells, donor1_CNhs12504_12238-129G6_reverse 0 2232 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor1.CNhs12504.12238-129G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel chorionic membrane cells, donor1_CNhs12504_12238-129G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12238-129G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChorionicMembraneCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChorionicMembraneCellsDonor1_CNhs12504_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor2_CNhs12506_tpm_fwd ChorionicMembraneCellsD2+ bigWig chorionic membrane cells, donor2_CNhs12506_12239-129G7_forward 1 2233 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor2.CNhs12506.12239-129G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel chorionic membrane cells, donor2_CNhs12506_12239-129G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12239-129G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChorionicMembraneCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChorionicMembraneCellsDonor2_CNhs12506_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor2_CNhs12506_ctss_fwd ChorionicMembraneCellsD2+ bigWig chorionic membrane cells, donor2_CNhs12506_12239-129G7_forward 0 2233 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor2.CNhs12506.12239-129G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel chorionic membrane cells, donor2_CNhs12506_12239-129G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12239-129G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChorionicMembraneCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChorionicMembraneCellsDonor2_CNhs12506_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor2_CNhs12506_tpm_rev ChorionicMembraneCellsD2- bigWig chorionic membrane cells, donor2_CNhs12506_12239-129G7_reverse 1 2234 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor2.CNhs12506.12239-129G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel chorionic membrane cells, donor2_CNhs12506_12239-129G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12239-129G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChorionicMembraneCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChorionicMembraneCellsDonor2_CNhs12506_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor2_CNhs12506_ctss_rev ChorionicMembraneCellsD2- bigWig chorionic membrane cells, donor2_CNhs12506_12239-129G7_reverse 0 2234 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor2.CNhs12506.12239-129G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel chorionic membrane cells, donor2_CNhs12506_12239-129G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12239-129G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChorionicMembraneCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChorionicMembraneCellsDonor2_CNhs12506_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor3_CNhs12380_tpm_fwd ChorionicMembraneCellsD3+ bigWig chorionic membrane cells, donor3_CNhs12380_12240-129G8_forward 1 2235 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor3.CNhs12380.12240-129G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel chorionic membrane cells, donor3_CNhs12380_12240-129G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12240-129G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChorionicMembraneCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChorionicMembraneCellsDonor3_CNhs12380_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor3_CNhs12380_ctss_fwd ChorionicMembraneCellsD3+ bigWig chorionic membrane cells, donor3_CNhs12380_12240-129G8_forward 0 2235 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor3.CNhs12380.12240-129G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel chorionic membrane cells, donor3_CNhs12380_12240-129G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12240-129G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChorionicMembraneCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChorionicMembraneCellsDonor3_CNhs12380_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor3_CNhs12380_tpm_rev ChorionicMembraneCellsD3- bigWig chorionic membrane cells, donor3_CNhs12380_12240-129G8_reverse 1 2236 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor3.CNhs12380.12240-129G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel chorionic membrane cells, donor3_CNhs12380_12240-129G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12240-129G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChorionicMembraneCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChorionicMembraneCellsDonor3_CNhs12380_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor3_CNhs12380_ctss_rev ChorionicMembraneCellsD3- bigWig chorionic membrane cells, donor3_CNhs12380_12240-129G8_reverse 0 2236 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor3.CNhs12380.12240-129G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel chorionic membrane cells, donor3_CNhs12380_12240-129G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12240-129G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChorionicMembraneCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChorionicMembraneCellsDonor3_CNhs12380_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor1_CNhs10871_tpm_fwd CiliaryEpithelialCellsD1+ bigWig Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_forward 1 2237 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor1.CNhs10871.11242-116D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11242-116D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CiliaryEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CiliaryEpithelialCellsDonor1_CNhs10871_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor1_CNhs10871_ctss_fwd CiliaryEpithelialCellsD1+ bigWig Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_forward 0 2237 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor1.CNhs10871.11242-116D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11242-116D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CiliaryEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CiliaryEpithelialCellsDonor1_CNhs10871_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor1_CNhs10871_tpm_rev CiliaryEpithelialCellsD1- bigWig Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_reverse 1 2238 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor1.CNhs10871.11242-116D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11242-116D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CiliaryEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CiliaryEpithelialCellsDonor1_CNhs10871_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor1_CNhs10871_ctss_rev CiliaryEpithelialCellsD1- bigWig Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_reverse 0 2238 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor1.CNhs10871.11242-116D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11242-116D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CiliaryEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CiliaryEpithelialCellsDonor1_CNhs10871_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor2_CNhs11966_tpm_fwd CiliaryEpithelialCellsD2+ bigWig Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_forward 1 2239 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor2.CNhs11966.11323-117D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11323-117D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CiliaryEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CiliaryEpithelialCellsDonor2_CNhs11966_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor2_CNhs11966_ctss_fwd CiliaryEpithelialCellsD2+ bigWig Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_forward 0 2239 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor2.CNhs11966.11323-117D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11323-117D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CiliaryEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CiliaryEpithelialCellsDonor2_CNhs11966_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor2_CNhs11966_tpm_rev CiliaryEpithelialCellsD2- bigWig Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_reverse 1 2240 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor2.CNhs11966.11323-117D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11323-117D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CiliaryEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CiliaryEpithelialCellsDonor2_CNhs11966_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor2_CNhs11966_ctss_rev CiliaryEpithelialCellsD2- bigWig Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_reverse 0 2240 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor2.CNhs11966.11323-117D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11323-117D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CiliaryEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CiliaryEpithelialCellsDonor2_CNhs11966_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor3_CNhs12009_tpm_fwd CiliaryEpithelialCellsD3+ bigWig Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_forward 1 2241 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor3.CNhs12009.11399-118D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11399-118D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CiliaryEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CiliaryEpithelialCellsDonor3_CNhs12009_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor3_CNhs12009_ctss_fwd CiliaryEpithelialCellsD3+ bigWig Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_forward 0 2241 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor3.CNhs12009.11399-118D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11399-118D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CiliaryEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CiliaryEpithelialCellsDonor3_CNhs12009_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor3_CNhs12009_tpm_rev CiliaryEpithelialCellsD3- bigWig Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_reverse 1 2242 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor3.CNhs12009.11399-118D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11399-118D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CiliaryEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CiliaryEpithelialCellsDonor3_CNhs12009_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor3_CNhs12009_ctss_rev CiliaryEpithelialCellsD3- bigWig Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_reverse 0 2242 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor3.CNhs12009.11399-118D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11399-118D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CiliaryEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CiliaryEpithelialCellsDonor3_CNhs12009_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4\ urlLabel FANTOM5 Details:\ CornealEpithelialCellsDonor1_CNhs11336_tpm_fwd CornealEpithelialCellsD1+ bigWig Corneal Epithelial Cells, donor1_CNhs11336_11526-119I5_forward 1 2243 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11526-119I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor1.CNhs11336.11526-119I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Corneal Epithelial Cells, donor1_CNhs11336_11526-119I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11526-119I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CornealEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CornealEpithelialCellsDonor1_CNhs11336_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11526-119I5\ urlLabel FANTOM5 Details:\ CornealEpithelialCellsDonor1_CNhs11336_ctss_fwd CornealEpithelialCellsD1+ bigWig Corneal Epithelial Cells, donor1_CNhs11336_11526-119I5_forward 0 2243 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11526-119I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor1.CNhs11336.11526-119I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Corneal Epithelial Cells, donor1_CNhs11336_11526-119I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11526-119I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CornealEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CornealEpithelialCellsDonor1_CNhs11336_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11526-119I5\ urlLabel FANTOM5 Details:\ CornealEpithelialCellsDonor1_CNhs11336_tpm_rev CornealEpithelialCellsD1- bigWig Corneal Epithelial Cells, donor1_CNhs11336_11526-119I5_reverse 1 2244 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11526-119I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor1.CNhs11336.11526-119I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Corneal Epithelial Cells, donor1_CNhs11336_11526-119I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11526-119I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CornealEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CornealEpithelialCellsDonor1_CNhs11336_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11526-119I5\ urlLabel FANTOM5 Details:\ CornealEpithelialCellsDonor1_CNhs11336_ctss_rev CornealEpithelialCellsD1- bigWig Corneal Epithelial Cells, donor1_CNhs11336_11526-119I5_reverse 0 2244 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11526-119I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor1.CNhs11336.11526-119I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Corneal Epithelial Cells, donor1_CNhs11336_11526-119I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11526-119I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CornealEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CornealEpithelialCellsDonor1_CNhs11336_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11526-119I5\ urlLabel FANTOM5 Details:\ CornealEpithelialCellsDonor2_CNhs12094_tpm_fwd CornealEpithelialCellsD2+ bigWig Corneal Epithelial Cells, donor2_CNhs12094_11606-120I4_forward 1 2245 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11606-120I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor2.CNhs12094.11606-120I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Corneal Epithelial Cells, donor2_CNhs12094_11606-120I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11606-120I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CornealEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CornealEpithelialCellsDonor2_CNhs12094_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11606-120I4\ urlLabel FANTOM5 Details:\ CornealEpithelialCellsDonor2_CNhs12094_ctss_fwd CornealEpithelialCellsD2+ bigWig Corneal Epithelial Cells, donor2_CNhs12094_11606-120I4_forward 0 2245 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11606-120I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor2.CNhs12094.11606-120I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Corneal Epithelial Cells, donor2_CNhs12094_11606-120I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11606-120I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CornealEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CornealEpithelialCellsDonor2_CNhs12094_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11606-120I4\ urlLabel FANTOM5 Details:\ CornealEpithelialCellsDonor2_CNhs12094_tpm_rev CornealEpithelialCellsD2- bigWig Corneal Epithelial Cells, donor2_CNhs12094_11606-120I4_reverse 1 2246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11606-120I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor2.CNhs12094.11606-120I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Corneal Epithelial Cells, donor2_CNhs12094_11606-120I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11606-120I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CornealEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CornealEpithelialCellsDonor2_CNhs12094_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11606-120I4\ urlLabel FANTOM5 Details:\ CornealEpithelialCellsDonor2_CNhs12094_ctss_rev CornealEpithelialCellsD2- bigWig Corneal Epithelial Cells, donor2_CNhs12094_11606-120I4_reverse 0 2246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11606-120I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor2.CNhs12094.11606-120I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Corneal Epithelial Cells, donor2_CNhs12094_11606-120I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11606-120I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CornealEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CornealEpithelialCellsDonor2_CNhs12094_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11606-120I4\ urlLabel FANTOM5 Details:\ CornealEpithelialCellsDonor3_CNhs12123_tpm_fwd CornealEpithelialCellsD3+ bigWig Corneal Epithelial Cells, donor3_CNhs12123_11687-122I4_forward 1 2247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11687-122I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor3.CNhs12123.11687-122I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Corneal Epithelial Cells, donor3_CNhs12123_11687-122I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11687-122I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CornealEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CornealEpithelialCellsDonor3_CNhs12123_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11687-122I4\ urlLabel FANTOM5 Details:\ CornealEpithelialCellsDonor3_CNhs12123_ctss_fwd CornealEpithelialCellsD3+ bigWig Corneal Epithelial Cells, donor3_CNhs12123_11687-122I4_forward 0 2247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11687-122I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor3.CNhs12123.11687-122I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Corneal Epithelial Cells, donor3_CNhs12123_11687-122I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11687-122I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CornealEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CornealEpithelialCellsDonor3_CNhs12123_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11687-122I4\ urlLabel FANTOM5 Details:\ CornealEpithelialCellsDonor3_CNhs12123_tpm_rev CornealEpithelialCellsD3- bigWig Corneal Epithelial Cells, donor3_CNhs12123_11687-122I4_reverse 1 2248 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11687-122I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor3.CNhs12123.11687-122I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Corneal Epithelial Cells, donor3_CNhs12123_11687-122I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11687-122I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CornealEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CornealEpithelialCellsDonor3_CNhs12123_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11687-122I4\ urlLabel FANTOM5 Details:\ CornealEpithelialCellsDonor3_CNhs12123_ctss_rev CornealEpithelialCellsD3- bigWig Corneal Epithelial Cells, donor3_CNhs12123_11687-122I4_reverse 0 2248 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11687-122I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor3.CNhs12123.11687-122I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Corneal Epithelial Cells, donor3_CNhs12123_11687-122I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11687-122I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CornealEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CornealEpithelialCellsDonor3_CNhs12123_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11687-122I4\ urlLabel FANTOM5 Details:\ DendriticCellsMonocyteImmatureDerivedDonor1TechRep1_CNhs10855_tpm_fwd DendriticCellsMonocyteImmatureD1Tr1+ bigWig Dendritic Cells - monocyte immature derived, donor1, tech_rep1_CNhs10855_11227-116C3_forward 1 2249 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11227-116C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor1%2c%20tech_rep1.CNhs10855.11227-116C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - monocyte immature derived, donor1, tech_rep1_CNhs10855_11227-116C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11227-116C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsMonocyteImmatureD1Tr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track DendriticCellsMonocyteImmatureDerivedDonor1TechRep1_CNhs10855_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11227-116C3\ urlLabel FANTOM5 Details:\ DendriticCellsMonocyteImmatureDerivedDonor1TechRep1_CNhs10855_ctss_fwd DendriticCellsMonocyteImmatureD1Tr1+ bigWig Dendritic Cells - monocyte immature derived, donor1, tech_rep1_CNhs10855_11227-116C3_forward 0 2249 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11227-116C3 regulation 0 bigDataUrl 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EndothelialCellsVeinD2- bigWig Endothelial Cells - Vein, donor2_CNhs11377_11344-117G3_reverse 1 2294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11344-117G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor2.CNhs11377.11344-117G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Vein, donor2_CNhs11377_11344-117G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11344-117G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsVeinD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsVeinDonor2_CNhs11377_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11344-117G3\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor2_CNhs11377_ctss_rev EndothelialCellsVeinD2- bigWig Endothelial Cells - Vein, donor2_CNhs11377_11344-117G3_reverse 0 2294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11344-117G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor2.CNhs11377.11344-117G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Vein, donor2_CNhs11377_11344-117G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11344-117G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsVeinD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsVeinDonor2_CNhs11377_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11344-117G3\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor3_CNhs12026_tpm_fwd EndothelialCellsVeinD3+ bigWig Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_forward 1 2295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor3.CNhs12026.11416-118F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11416-118F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsVeinD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsVeinDonor3_CNhs12026_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor3_CNhs12026_ctss_fwd EndothelialCellsVeinD3+ bigWig Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_forward 0 2295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor3.CNhs12026.11416-118F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11416-118F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsVeinD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsVeinDonor3_CNhs12026_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor3_CNhs12026_tpm_rev EndothelialCellsVeinD3- bigWig Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_reverse 1 2296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor3.CNhs12026.11416-118F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11416-118F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsVeinD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsVeinDonor3_CNhs12026_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor3_CNhs12026_ctss_rev EndothelialCellsVeinD3- bigWig Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_reverse 0 2296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor3.CNhs12026.11416-118F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11416-118F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsVeinD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsVeinDonor3_CNhs12026_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor1_CNhs11323_tpm_fwd EsophagealEpithelialCellsD1+ bigWig Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_forward 1 2297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor1.CNhs11323.11507-119G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11507-119G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagealEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EsophagealEpithelialCellsDonor1_CNhs11323_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor1_CNhs11323_ctss_fwd EsophagealEpithelialCellsD1+ bigWig Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_forward 0 2297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor1.CNhs11323.11507-119G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11507-119G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagealEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EsophagealEpithelialCellsDonor1_CNhs11323_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor1_CNhs11323_tpm_rev EsophagealEpithelialCellsD1- bigWig Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_reverse 1 2298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor1.CNhs11323.11507-119G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11507-119G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagealEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EsophagealEpithelialCellsDonor1_CNhs11323_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor1_CNhs11323_ctss_rev EsophagealEpithelialCellsD1- bigWig Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_reverse 0 2298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor1.CNhs11323.11507-119G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11507-119G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagealEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EsophagealEpithelialCellsDonor1_CNhs11323_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor2_CNhs12083_tpm_fwd EsophagealEpithelialCellsD2+ bigWig Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_forward 1 2299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor2.CNhs12083.11587-120G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11587-120G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagealEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EsophagealEpithelialCellsDonor2_CNhs12083_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor2_CNhs12083_ctss_fwd EsophagealEpithelialCellsD2+ bigWig Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_forward 0 2299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor2.CNhs12083.11587-120G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11587-120G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagealEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EsophagealEpithelialCellsDonor2_CNhs12083_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor2_CNhs12083_tpm_rev EsophagealEpithelialCellsD2- bigWig Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_reverse 1 2300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor2.CNhs12083.11587-120G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11587-120G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagealEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EsophagealEpithelialCellsDonor2_CNhs12083_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor2_CNhs12083_ctss_rev EsophagealEpithelialCellsD2- bigWig Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_reverse 0 2300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor2.CNhs12083.11587-120G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11587-120G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagealEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EsophagealEpithelialCellsDonor2_CNhs12083_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor3_CNhs12622_tpm_fwd EsophagealEpithelialCellsD3+ bigWig Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_forward 1 2301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor3.CNhs12622.11668-122G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11668-122G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagealEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EsophagealEpithelialCellsDonor3_CNhs12622_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor3_CNhs12622_ctss_fwd EsophagealEpithelialCellsD3+ bigWig Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_forward 0 2301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor3.CNhs12622.11668-122G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11668-122G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagealEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EsophagealEpithelialCellsDonor3_CNhs12622_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor3_CNhs12622_tpm_rev EsophagealEpithelialCellsD3- bigWig Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_reverse 1 2302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor3.CNhs12622.11668-122G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11668-122G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagealEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EsophagealEpithelialCellsDonor3_CNhs12622_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor3_CNhs12622_ctss_rev EsophagealEpithelialCellsD3- bigWig Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_reverse 0 2302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor3.CNhs12622.11668-122G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11668-122G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagealEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EsophagealEpithelialCellsDonor3_CNhs12622_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor1_CNhs10874_tpm_fwd FibroAorticAdventitialD1+ bigWig Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_forward 1 2303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor1.CNhs10874.11245-116E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11245-116E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastAorticAdventitialDonor1_CNhs10874_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor1_CNhs10874_ctss_fwd FibroAorticAdventitialD1+ bigWig Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_forward 0 2303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor1.CNhs10874.11245-116E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11245-116E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastAorticAdventitialDonor1_CNhs10874_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor1_CNhs10874_tpm_rev FibroAorticAdventitialD1- bigWig Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_reverse 1 2304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor1.CNhs10874.11245-116E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11245-116E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastAorticAdventitialDonor1_CNhs10874_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor1_CNhs10874_ctss_rev FibroAorticAdventitialD1- bigWig Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_reverse 0 2304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor1.CNhs10874.11245-116E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11245-116E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastAorticAdventitialDonor1_CNhs10874_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor2_CNhs11968_tpm_fwd FibroAorticAdventitialD2+ bigWig Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_forward 1 2305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor2.CNhs11968.11326-117E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11326-117E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastAorticAdventitialDonor2_CNhs11968_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor2_CNhs11968_ctss_fwd FibroAorticAdventitialD2+ bigWig Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_forward 0 2305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor2.CNhs11968.11326-117E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11326-117E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastAorticAdventitialDonor2_CNhs11968_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor2_CNhs11968_tpm_rev FibroAorticAdventitialD2- bigWig Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_reverse 1 2306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor2.CNhs11968.11326-117E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11326-117E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastAorticAdventitialDonor2_CNhs11968_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor2_CNhs11968_ctss_rev FibroAorticAdventitialD2- bigWig Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_reverse 0 2306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor2.CNhs11968.11326-117E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11326-117E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastAorticAdventitialDonor2_CNhs11968_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor3_CNhs12011_tpm_fwd FibroAorticAdventitialD3+ bigWig Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_forward 1 2307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor3.CNhs12011.11401-118D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11401-118D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastAorticAdventitialDonor3_CNhs12011_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor3_CNhs12011_ctss_fwd FibroAorticAdventitialD3+ bigWig Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_forward 0 2307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor3.CNhs12011.11401-118D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11401-118D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastAorticAdventitialDonor3_CNhs12011_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor3_CNhs12011_tpm_rev FibroAorticAdventitialD3- bigWig Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_reverse 1 2308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor3.CNhs12011.11401-118D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11401-118D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastAorticAdventitialDonor3_CNhs12011_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor3_CNhs12011_ctss_rev FibroAorticAdventitialD3- bigWig Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_reverse 0 2308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor3.CNhs12011.11401-118D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11401-118D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastAorticAdventitialDonor3_CNhs12011_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor1_CNhs12498_tpm_fwd FibroCardiacD1+ bigWig Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_forward 1 2309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor1.CNhs12498.11268-116G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11268-116G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor1_CNhs12498_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor1_CNhs12498_ctss_fwd FibroCardiacD1+ bigWig Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_forward 0 2309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor1.CNhs12498.11268-116G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11268-116G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor1_CNhs12498_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor1_CNhs12498_tpm_rev FibroCardiacD1- bigWig Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_reverse 1 2310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor1.CNhs12498.11268-116G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11268-116G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor1_CNhs12498_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor1_CNhs12498_ctss_rev FibroCardiacD1- bigWig Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_reverse 0 2310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor1.CNhs12498.11268-116G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11268-116G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor1_CNhs12498_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor2_CNhs11378_tpm_fwd FibroCardiacD2+ bigWig Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_forward 1 2311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor2.CNhs11378.11345-117G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11345-117G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor2_CNhs11378_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor2_CNhs11378_ctss_fwd FibroCardiacD2+ bigWig Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_forward 0 2311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor2.CNhs11378.11345-117G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11345-117G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor2_CNhs11378_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor2_CNhs11378_tpm_rev FibroCardiacD2- bigWig Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_reverse 1 2312 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor2.CNhs11378.11345-117G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11345-117G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor2_CNhs11378_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor2_CNhs11378_ctss_rev FibroCardiacD2- bigWig Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_reverse 0 2312 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor2.CNhs11378.11345-117G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11345-117G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor2_CNhs11378_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor3_CNhs12027_tpm_fwd FibroCardiacD3+ bigWig Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_forward 1 2313 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor3.CNhs12027.11417-118F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11417-118F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor3_CNhs12027_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor3_CNhs12027_ctss_fwd FibroCardiacD3+ bigWig Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_forward 0 2313 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor3.CNhs12027.11417-118F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11417-118F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor3_CNhs12027_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor3_CNhs12027_tpm_rev FibroCardiacD3- bigWig Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_reverse 1 2314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor3.CNhs12027.11417-118F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11417-118F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor3_CNhs12027_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor3_CNhs12027_ctss_rev FibroCardiacD3- bigWig Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_reverse 0 2314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor3.CNhs12027.11417-118F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11417-118F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor3_CNhs12027_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor4_CNhs11909_tpm_fwd FibroCardiacD4+ bigWig Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_forward 1 2315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor4.CNhs11909.11452-119A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11452-119A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor4_CNhs11909_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor4_CNhs11909_ctss_fwd FibroCardiacD4+ bigWig Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_forward 0 2315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor4.CNhs11909.11452-119A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11452-119A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor4_CNhs11909_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor4_CNhs11909_tpm_rev FibroCardiacD4- bigWig Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_reverse 1 2316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor4.CNhs11909.11452-119A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11452-119A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor4_CNhs11909_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor4_CNhs11909_ctss_rev FibroCardiacD4- bigWig Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_reverse 0 2316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor4.CNhs11909.11452-119A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11452-119A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor4_CNhs11909_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor5_CNhs12057_tpm_fwd FibroCardiacD5+ bigWig Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_forward 1 2317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor5.CNhs12057.11456-119A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11456-119A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor5_CNhs12057_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor5_CNhs12057_ctss_fwd FibroCardiacD5+ bigWig Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_forward 0 2317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor5.CNhs12057.11456-119A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11456-119A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor5_CNhs12057_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor5_CNhs12057_tpm_rev FibroCardiacD5- bigWig Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_reverse 1 2318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor5.CNhs12057.11456-119A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11456-119A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor5_CNhs12057_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor5_CNhs12057_ctss_rev FibroCardiacD5- bigWig Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_reverse 0 2318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor5.CNhs12057.11456-119A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11456-119A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor5_CNhs12057_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor6_CNhs12061_tpm_fwd FibroCardiacD6+ bigWig Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_forward 1 2319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor6.CNhs12061.11460-119B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11460-119B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor6_CNhs12061_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor6_CNhs12061_ctss_fwd FibroCardiacD6+ bigWig Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_forward 0 2319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor6.CNhs12061.11460-119B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11460-119B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor6_CNhs12061_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor6_CNhs12061_tpm_rev FibroCardiacD6- bigWig Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_reverse 1 2320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor6.CNhs12061.11460-119B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11460-119B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor6_CNhs12061_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor6_CNhs12061_ctss_rev FibroCardiacD6- bigWig Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_reverse 0 2320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor6.CNhs12061.11460-119B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11460-119B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor6_CNhs12061_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor1_CNhs11319_tpm_fwd FibroChoroidPlexusD1+ bigWig Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_forward 1 2321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor1.CNhs11319.11492-119E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11492-119E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroChoroidPlexusD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastChoroidPlexusDonor1_CNhs11319_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor1_CNhs11319_ctss_fwd FibroChoroidPlexusD1+ bigWig Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_forward 0 2321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor1.CNhs11319.11492-119E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11492-119E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroChoroidPlexusD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastChoroidPlexusDonor1_CNhs11319_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor1_CNhs11319_tpm_rev FibroChoroidPlexusD1- bigWig Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_reverse 1 2322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor1.CNhs11319.11492-119E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11492-119E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroChoroidPlexusD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastChoroidPlexusDonor1_CNhs11319_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor1_CNhs11319_ctss_rev FibroChoroidPlexusD1- bigWig Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_reverse 0 2322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor1.CNhs11319.11492-119E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11492-119E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroChoroidPlexusD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastChoroidPlexusDonor1_CNhs11319_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor2_CNhs12344_tpm_fwd FibroChoroidPlexusD2+ bigWig Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_forward 1 2323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor2.CNhs12344.11572-120E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11572-120E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroChoroidPlexusD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastChoroidPlexusDonor2_CNhs12344_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor2_CNhs12344_ctss_fwd FibroChoroidPlexusD2+ bigWig Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_forward 0 2323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor2.CNhs12344.11572-120E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11572-120E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroChoroidPlexusD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastChoroidPlexusDonor2_CNhs12344_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor2_CNhs12344_tpm_rev FibroChoroidPlexusD2- bigWig Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_reverse 1 2324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor2.CNhs12344.11572-120E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11572-120E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroChoroidPlexusD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastChoroidPlexusDonor2_CNhs12344_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor2_CNhs12344_ctss_rev FibroChoroidPlexusD2- bigWig Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_reverse 0 2324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor2.CNhs12344.11572-120E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11572-120E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroChoroidPlexusD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastChoroidPlexusDonor2_CNhs12344_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor3_CNhs12620_tpm_fwd FibroChoroidPlexusD3+ bigWig Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_forward 1 2325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor3.CNhs12620.11653-122E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11653-122E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroChoroidPlexusD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastChoroidPlexusDonor3_CNhs12620_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor3_CNhs12620_ctss_fwd FibroChoroidPlexusD3+ bigWig Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_forward 0 2325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor3.CNhs12620.11653-122E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11653-122E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroChoroidPlexusD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastChoroidPlexusDonor3_CNhs12620_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor3_CNhs12620_tpm_rev FibroChoroidPlexusD3- bigWig Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_reverse 1 2326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor3.CNhs12620.11653-122E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11653-122E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroChoroidPlexusD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastChoroidPlexusDonor3_CNhs12620_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor3_CNhs12620_ctss_rev FibroChoroidPlexusD3- bigWig Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_reverse 0 2326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor3.CNhs12620.11653-122E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11653-122E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroChoroidPlexusD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastChoroidPlexusDonor3_CNhs12620_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6\ urlLabel FANTOM5 Details:\ FibroblastConjunctivalDonor1_CNhs11339_tpm_fwd FibroConjunctivalD1+ bigWig Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_forward 1 2327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor1.CNhs11339.11531-120A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11531-120A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroConjunctivalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastConjunctivalDonor1_CNhs11339_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1\ urlLabel FANTOM5 Details:\ FibroblastConjunctivalDonor1_CNhs11339_ctss_fwd FibroConjunctivalD1+ bigWig Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_forward 0 2327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor1.CNhs11339.11531-120A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11531-120A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroConjunctivalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastConjunctivalDonor1_CNhs11339_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1\ urlLabel FANTOM5 Details:\ FibroblastConjunctivalDonor1_CNhs11339_tpm_rev FibroConjunctivalD1- bigWig Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_reverse 1 2328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor1.CNhs11339.11531-120A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11531-120A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroConjunctivalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastConjunctivalDonor1_CNhs11339_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1\ urlLabel FANTOM5 Details:\ FibroblastConjunctivalDonor1_CNhs11339_ctss_rev FibroConjunctivalD1- bigWig Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_reverse 0 2328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor1.CNhs11339.11531-120A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11531-120A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroConjunctivalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastConjunctivalDonor1_CNhs11339_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1\ urlLabel FANTOM5 Details:\ FibroblastConjunctivalDonor3_CNhs12734_tpm_fwd FibroConjunctivalD3+ bigWig Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_forward 1 2329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor3.CNhs12734.11692-122I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11692-122I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroConjunctivalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastConjunctivalDonor3_CNhs12734_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9\ urlLabel FANTOM5 Details:\ FibroblastConjunctivalDonor3_CNhs12734_ctss_fwd FibroConjunctivalD3+ bigWig Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_forward 0 2329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor3.CNhs12734.11692-122I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11692-122I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroConjunctivalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastConjunctivalDonor3_CNhs12734_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9\ urlLabel FANTOM5 Details:\ FibroblastConjunctivalDonor3_CNhs12734_tpm_rev FibroConjunctivalD3- bigWig Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_reverse 1 2330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor3.CNhs12734.11692-122I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11692-122I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroConjunctivalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastConjunctivalDonor3_CNhs12734_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9\ urlLabel FANTOM5 Details:\ FibroblastConjunctivalDonor3_CNhs12734_ctss_rev FibroConjunctivalD3- bigWig Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_reverse 0 2330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor3.CNhs12734.11692-122I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11692-122I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroConjunctivalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastConjunctivalDonor3_CNhs12734_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor1_CNhs12499_tpm_fwd FibroDermalD1+ bigWig Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_forward 1 2331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor1.CNhs12499.11269-116G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11269-116G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor1_CNhs12499_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor1_CNhs12499_ctss_fwd FibroDermalD1+ bigWig Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_forward 0 2331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor1.CNhs12499.11269-116G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11269-116G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor1_CNhs12499_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor1_CNhs12499_tpm_rev FibroDermalD1- bigWig Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_reverse 1 2332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor1.CNhs12499.11269-116G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11269-116G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor1_CNhs12499_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor1_CNhs12499_ctss_rev FibroDermalD1- bigWig Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_reverse 0 2332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor1.CNhs12499.11269-116G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11269-116G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor1_CNhs12499_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor2_CNhs11379_tpm_fwd FibroDermalD2+ bigWig Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_forward 1 2333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor2.CNhs11379.11346-117G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11346-117G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor2_CNhs11379_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor2_CNhs11379_ctss_fwd FibroDermalD2+ bigWig Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_forward 0 2333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor2.CNhs11379.11346-117G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11346-117G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor2_CNhs11379_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor2_CNhs11379_tpm_rev FibroDermalD2- bigWig Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_reverse 1 2334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor2.CNhs11379.11346-117G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11346-117G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor2_CNhs11379_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor2_CNhs11379_ctss_rev FibroDermalD2- bigWig Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_reverse 0 2334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor2.CNhs11379.11346-117G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11346-117G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor2_CNhs11379_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor3_CNhs12028_tpm_fwd FibroDermalD3+ bigWig Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_forward 1 2335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor3.CNhs12028.11418-118F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11418-118F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor3_CNhs12028_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor3_CNhs12028_ctss_fwd FibroDermalD3+ bigWig Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_forward 0 2335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor3.CNhs12028.11418-118F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11418-118F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor3_CNhs12028_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor3_CNhs12028_tpm_rev FibroDermalD3- bigWig Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_reverse 1 2336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor3.CNhs12028.11418-118F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11418-118F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor3_CNhs12028_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor3_CNhs12028_ctss_rev FibroDermalD3- bigWig Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_reverse 0 2336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor3.CNhs12028.11418-118F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11418-118F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor3_CNhs12028_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor4_CNhs12052_tpm_fwd FibroDermalD4+ bigWig Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_forward 1 2337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor4.CNhs12052.11450-119A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11450-119A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor4_CNhs12052_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor4_CNhs12052_ctss_fwd FibroDermalD4+ bigWig Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_forward 0 2337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor4.CNhs12052.11450-119A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11450-119A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor4_CNhs12052_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor4_CNhs12052_tpm_rev FibroDermalD4- bigWig Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_reverse 1 2338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor4.CNhs12052.11450-119A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11450-119A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor4_CNhs12052_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor4_CNhs12052_ctss_rev FibroDermalD4- bigWig Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_reverse 0 2338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor4.CNhs12052.11450-119A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11450-119A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor4_CNhs12052_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor5_CNhs12055_tpm_fwd FibroDermalD5+ bigWig Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_forward 1 2339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor5.CNhs12055.11454-119A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11454-119A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor5_CNhs12055_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor5_CNhs12055_ctss_fwd FibroDermalD5+ bigWig Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_forward 0 2339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor5.CNhs12055.11454-119A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11454-119A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor5_CNhs12055_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor5_CNhs12055_tpm_rev FibroDermalD5- bigWig Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_reverse 1 2340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor5.CNhs12055.11454-119A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11454-119A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor5_CNhs12055_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor5_CNhs12055_ctss_rev FibroDermalD5- bigWig Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_reverse 0 2340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor5.CNhs12055.11454-119A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11454-119A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor5_CNhs12055_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor6_CNhs12059_tpm_fwd FibroDermalD6+ bigWig Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_forward 1 2341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor6.CNhs12059.11458-119A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11458-119A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor6_CNhs12059_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor6_CNhs12059_ctss_fwd FibroDermalD6+ bigWig Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_forward 0 2341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor6.CNhs12059.11458-119A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11458-119A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor6_CNhs12059_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor6_CNhs12059_tpm_rev FibroDermalD6- bigWig Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_reverse 1 2342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor6.CNhs12059.11458-119A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11458-119A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor6_CNhs12059_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor6_CNhs12059_ctss_rev FibroDermalD6- bigWig Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_reverse 0 2342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor6.CNhs12059.11458-119A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11458-119A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor6_CNhs12059_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor1_CNhs10866_tpm_fwd FibroGingivalD1+ bigWig Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_forward 1 2343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor1.CNhs10866.11237-116D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11237-116D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor1_CNhs10866_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor1_CNhs10866_ctss_fwd FibroGingivalD1+ bigWig Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_forward 0 2343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor1.CNhs10866.11237-116D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11237-116D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor1_CNhs10866_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor1_CNhs10866_tpm_rev FibroGingivalD1- bigWig Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_reverse 1 2344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor1.CNhs10866.11237-116D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11237-116D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor1_CNhs10866_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor1_CNhs10866_ctss_rev FibroGingivalD1- bigWig Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_reverse 0 2344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor1.CNhs10866.11237-116D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11237-116D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor1_CNhs10866_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor10Periodontitis_CNhs14135_tpm_fwd FibroGingivalD10 (p+ bigWig Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_forward 1 2345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor10%20%28periodontitis%29.CNhs14135.11928-125I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11928-125I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD10 (p+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor10Periodontitis_CNhs14135_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor10Periodontitis_CNhs14135_ctss_fwd FibroGingivalD10 (p+ bigWig Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_forward 0 2345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor10%20%28periodontitis%29.CNhs14135.11928-125I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11928-125I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD10 (p+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor10Periodontitis_CNhs14135_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor10Periodontitis_CNhs14135_tpm_rev FibroGingivalD10 (p- bigWig Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_reverse 1 2346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor10%20%28periodontitis%29.CNhs14135.11928-125I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11928-125I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD10 (p-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor10Periodontitis_CNhs14135_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor10Periodontitis_CNhs14135_ctss_rev FibroGingivalD10 (p- bigWig Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_reverse 0 2346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor10%20%28periodontitis%29.CNhs14135.11928-125I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11928-125I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD10 (p-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor10Periodontitis_CNhs14135_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor2_CNhs11961_tpm_fwd FibroGingivalD2+ bigWig Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_forward 1 2347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor2.CNhs11961.11318-117D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11318-117D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor2_CNhs11961_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor2_CNhs11961_ctss_fwd FibroGingivalD2+ bigWig Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_forward 0 2347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor2.CNhs11961.11318-117D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11318-117D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor2_CNhs11961_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor2_CNhs11961_tpm_rev FibroGingivalD2- bigWig Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_reverse 1 2348 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor2.CNhs11961.11318-117D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11318-117D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor2_CNhs11961_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor2_CNhs11961_ctss_rev FibroGingivalD2- bigWig Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_reverse 0 2348 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor2.CNhs11961.11318-117D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11318-117D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor2_CNhs11961_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor3_CNhs12006_tpm_fwd FibroGingivalD3+ bigWig Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_forward 1 2349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor3.CNhs12006.11394-118C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11394-118C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor3_CNhs12006_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor3_CNhs12006_ctss_fwd FibroGingivalD3+ bigWig Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_forward 0 2349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor3.CNhs12006.11394-118C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11394-118C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor3_CNhs12006_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor3_CNhs12006_tpm_rev FibroGingivalD3- bigWig Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_reverse 1 2350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor3.CNhs12006.11394-118C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11394-118C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor3_CNhs12006_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor3_CNhs12006_ctss_rev FibroGingivalD3- bigWig Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_reverse 0 2350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor3.CNhs12006.11394-118C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11394-118C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor3_CNhs12006_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor4GFH2_CNhs10848_tpm_fwd FibroGingivalD4+ bigWig Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_forward 1 2351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor4%20%28GFH2%29.CNhs10848.11222-116B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11222-116B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor4GFH2_CNhs10848_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor4GFH2_CNhs10848_ctss_fwd FibroGingivalD4+ bigWig Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_forward 0 2351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor4%20%28GFH2%29.CNhs10848.11222-116B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11222-116B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor4GFH2_CNhs10848_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor4GFH2_CNhs10848_tpm_rev FibroGingivalD4- bigWig Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_reverse 1 2352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor4%20%28GFH2%29.CNhs10848.11222-116B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11222-116B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor4GFH2_CNhs10848_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor4GFH2_CNhs10848_ctss_rev FibroGingivalD4- bigWig Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_reverse 0 2352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor4%20%28GFH2%29.CNhs10848.11222-116B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11222-116B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor4GFH2_CNhs10848_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor5GFH3_CNhs11952_tpm_fwd FibroGingivalD5+ bigWig Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_forward 1 2353 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor5%20%28GFH3%29.CNhs11952.11303-117B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11303-117B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor5GFH3_CNhs11952_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor5GFH3_CNhs11952_ctss_fwd FibroGingivalD5+ bigWig Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_forward 0 2353 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor5%20%28GFH3%29.CNhs11952.11303-117B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11303-117B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor5GFH3_CNhs11952_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor5GFH3_CNhs11952_tpm_rev FibroGingivalD5- bigWig Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_reverse 1 2354 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor5%20%28GFH3%29.CNhs11952.11303-117B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11303-117B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor5GFH3_CNhs11952_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor5GFH3_CNhs11952_ctss_rev FibroGingivalD5- bigWig Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_reverse 0 2354 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor5%20%28GFH3%29.CNhs11952.11303-117B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11303-117B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor5GFH3_CNhs11952_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor6Control_CNhs14129_tpm_fwd FibroGingivalD6+ bigWig Fibroblast - Gingival, donor6 (control)_CNhs14129_11922-125H5_forward 1 2355 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11922-125H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor6%20%28control%29.CNhs14129.11922-125H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor6 (control)_CNhs14129_11922-125H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11922-125H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor6Control_CNhs14129_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11922-125H5\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor6AggressivePeriodontitis_CNhs14128_ctss_fwd FibroGingivalD6+ bigWig Fibroblast - Gingival, donor6 (aggressive periodontitis)_CNhs14128_11921-125H4_forward 0 2355 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11921-125H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor6%20%28aggressive%20periodontitis%29.CNhs14128.11921-125H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor6 (aggressive periodontitis)_CNhs14128_11921-125H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11921-125H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor6AggressivePeriodontitis_CNhs14128_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11921-125H4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor6AggressivePeriodontitis_CNhs14128_tpm_fwd FibroGingivalD6+ bigWig Fibroblast - Gingival, donor6 (aggressive periodontitis)_CNhs14128_11921-125H4_forward 1 2356 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11921-125H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor6%20%28aggressive%20periodontitis%29.CNhs14128.11921-125H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor6 (aggressive periodontitis)_CNhs14128_11921-125H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11921-125H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor6AggressivePeriodontitis_CNhs14128_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11921-125H4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor6Control_CNhs14129_ctss_fwd FibroGingivalD6+ bigWig Fibroblast - Gingival, donor6 (control)_CNhs14129_11922-125H5_forward 0 2356 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11922-125H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor6%20%28control%29.CNhs14129.11922-125H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor6 (control)_CNhs14129_11922-125H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11922-125H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor6Control_CNhs14129_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11922-125H5\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor6Control_CNhs14129_tpm_rev FibroGingivalD6- bigWig Fibroblast - Gingival, donor6 (control)_CNhs14129_11922-125H5_reverse 1 2357 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11922-125H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor6%20%28control%29.CNhs14129.11922-125H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor6 (control)_CNhs14129_11922-125H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11922-125H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor6Control_CNhs14129_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11922-125H5\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor6Control_CNhs14129_ctss_rev FibroGingivalD6- bigWig Fibroblast - Gingival, donor6 (control)_CNhs14129_11922-125H5_reverse 0 2357 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11922-125H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor6%20%28control%29.CNhs14129.11922-125H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor6 (control)_CNhs14129_11922-125H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11922-125H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor6Control_CNhs14129_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11922-125H5\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor6AggressivePeriodontitis_CNhs14128_tpm_rev FibroGingivalD6- bigWig Fibroblast - Gingival, donor6 (aggressive periodontitis)_CNhs14128_11921-125H4_reverse 1 2358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11921-125H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor6%20%28aggressive%20periodontitis%29.CNhs14128.11921-125H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor6 (aggressive periodontitis)_CNhs14128_11921-125H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11921-125H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor6AggressivePeriodontitis_CNhs14128_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11921-125H4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor6AggressivePeriodontitis_CNhs14128_ctss_rev FibroGingivalD6- bigWig Fibroblast - Gingival, donor6 (aggressive periodontitis)_CNhs14128_11921-125H4_reverse 0 2358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11921-125H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor6%20%28aggressive%20periodontitis%29.CNhs14128.11921-125H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor6 (aggressive periodontitis)_CNhs14128_11921-125H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11921-125H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor6AggressivePeriodontitis_CNhs14128_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11921-125H4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor7AggressivePeriodontitis_CNhs14130_tpm_fwd FibroGingivalD7+ bigWig Fibroblast - Gingival, donor7 (aggressive periodontitis)_CNhs14130_11923-125H6_forward 1 2359 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11923-125H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor7%20%28aggressive%20periodontitis%29.CNhs14130.11923-125H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor7 (aggressive periodontitis)_CNhs14130_11923-125H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11923-125H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD7+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor7AggressivePeriodontitis_CNhs14130_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11923-125H6\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor7AggressivePeriodontitis_CNhs14130_ctss_fwd FibroGingivalD7+ bigWig Fibroblast - Gingival, donor7 (aggressive periodontitis)_CNhs14130_11923-125H6_forward 0 2359 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11923-125H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor7%20%28aggressive%20periodontitis%29.CNhs14130.11923-125H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor7 (aggressive periodontitis)_CNhs14130_11923-125H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11923-125H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD7+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor7AggressivePeriodontitis_CNhs14130_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11923-125H6\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor7Control_CNhs14131_tpm_fwd FibroGingivalD7+ bigWig Fibroblast - Gingival, donor7 (control)_CNhs14131_11924-125H7_forward 1 2360 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11924-125H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor7%20%28control%29.CNhs14131.11924-125H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor7 (control)_CNhs14131_11924-125H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11924-125H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD7+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor7Control_CNhs14131_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11924-125H7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor7Control_CNhs14131_ctss_fwd FibroGingivalD7+ bigWig Fibroblast - Gingival, donor7 (control)_CNhs14131_11924-125H7_forward 0 2360 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11924-125H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor7%20%28control%29.CNhs14131.11924-125H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor7 (control)_CNhs14131_11924-125H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11924-125H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD7+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor7Control_CNhs14131_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11924-125H7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor7AggressivePeriodontitis_CNhs14130_tpm_rev FibroGingivalD7- bigWig Fibroblast - Gingival, donor7 (aggressive periodontitis)_CNhs14130_11923-125H6_reverse 1 2361 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11923-125H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor7%20%28aggressive%20periodontitis%29.CNhs14130.11923-125H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor7 (aggressive periodontitis)_CNhs14130_11923-125H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11923-125H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD7-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor7AggressivePeriodontitis_CNhs14130_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11923-125H6\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor7AggressivePeriodontitis_CNhs14130_ctss_rev FibroGingivalD7- bigWig Fibroblast - Gingival, donor7 (aggressive periodontitis)_CNhs14130_11923-125H6_reverse 0 2361 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11923-125H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor7%20%28aggressive%20periodontitis%29.CNhs14130.11923-125H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor7 (aggressive periodontitis)_CNhs14130_11923-125H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11923-125H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD7-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor7AggressivePeriodontitis_CNhs14130_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11923-125H6\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor7Control_CNhs14131_tpm_rev FibroGingivalD7- bigWig Fibroblast - Gingival, donor7 (control)_CNhs14131_11924-125H7_reverse 1 2362 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11924-125H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor7%20%28control%29.CNhs14131.11924-125H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor7 (control)_CNhs14131_11924-125H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11924-125H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD7-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor7Control_CNhs14131_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11924-125H7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor7Control_CNhs14131_ctss_rev FibroGingivalD7- bigWig Fibroblast - Gingival, donor7 (control)_CNhs14131_11924-125H7_reverse 0 2362 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11924-125H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor7%20%28control%29.CNhs14131.11924-125H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor7 (control)_CNhs14131_11924-125H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11924-125H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD7-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor7Control_CNhs14131_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11924-125H7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor8Control_CNhs14133_tpm_fwd FibroGingivalD8+ bigWig Fibroblast - Gingival, donor8 (control)_CNhs14133_11926-125H9_forward 1 2363 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11926-125H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor8%20%28control%29.CNhs14133.11926-125H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor8 (control)_CNhs14133_11926-125H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11926-125H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD8+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor8Control_CNhs14133_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11926-125H9\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor8ChronicPeriodontitis_CNhs14132_ctss_fwd FibroGingivalD8+ bigWig Fibroblast - Gingival, donor8 (chronic periodontitis)_CNhs14132_11925-125H8_forward 0 2363 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11925-125H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor8%20%28chronic%20periodontitis%29.CNhs14132.11925-125H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor8 (chronic periodontitis)_CNhs14132_11925-125H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11925-125H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD8+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor8ChronicPeriodontitis_CNhs14132_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11925-125H8\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor8ChronicPeriodontitis_CNhs14132_tpm_fwd FibroGingivalD8+ bigWig Fibroblast - Gingival, donor8 (chronic periodontitis)_CNhs14132_11925-125H8_forward 1 2364 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11925-125H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor8%20%28chronic%20periodontitis%29.CNhs14132.11925-125H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor8 (chronic periodontitis)_CNhs14132_11925-125H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11925-125H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD8+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor8ChronicPeriodontitis_CNhs14132_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11925-125H8\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor8Control_CNhs14133_ctss_fwd FibroGingivalD8+ bigWig Fibroblast - Gingival, donor8 (control)_CNhs14133_11926-125H9_forward 0 2364 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11926-125H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor8%20%28control%29.CNhs14133.11926-125H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor8 (control)_CNhs14133_11926-125H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11926-125H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD8+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor8Control_CNhs14133_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11926-125H9\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor8ChronicPeriodontitis_CNhs14132_tpm_rev FibroGingivalD8- bigWig Fibroblast - Gingival, donor8 (chronic periodontitis)_CNhs14132_11925-125H8_reverse 1 2365 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11925-125H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor8%20%28chronic%20periodontitis%29.CNhs14132.11925-125H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor8 (chronic periodontitis)_CNhs14132_11925-125H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11925-125H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor8ChronicPeriodontitis_CNhs14132_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11925-125H8\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor8ChronicPeriodontitis_CNhs14132_ctss_rev FibroGingivalD8- bigWig Fibroblast - Gingival, donor8 (chronic periodontitis)_CNhs14132_11925-125H8_reverse 0 2365 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11925-125H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor8%20%28chronic%20periodontitis%29.CNhs14132.11925-125H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor8 (chronic periodontitis)_CNhs14132_11925-125H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11925-125H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor8ChronicPeriodontitis_CNhs14132_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11925-125H8\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor8Control_CNhs14133_tpm_rev FibroGingivalD8- bigWig Fibroblast - Gingival, donor8 (control)_CNhs14133_11926-125H9_reverse 1 2366 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11926-125H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor8%20%28control%29.CNhs14133.11926-125H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor8 (control)_CNhs14133_11926-125H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11926-125H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor8Control_CNhs14133_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11926-125H9\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor8Control_CNhs14133_ctss_rev FibroGingivalD8- bigWig Fibroblast - Gingival, donor8 (control)_CNhs14133_11926-125H9_reverse 0 2366 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11926-125H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor8%20%28control%29.CNhs14133.11926-125H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor8 (control)_CNhs14133_11926-125H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11926-125H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor8Control_CNhs14133_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11926-125H9\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor9Control_CNhs14134_tpm_fwd FibroGingivalD9+ bigWig Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_forward 1 2367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor9%20%28control%29.CNhs14134.11927-125I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11927-125I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD9+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor9Control_CNhs14134_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor9Control_CNhs14134_ctss_fwd FibroGingivalD9+ bigWig Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_forward 0 2367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor9%20%28control%29.CNhs14134.11927-125I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11927-125I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD9+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor9Control_CNhs14134_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor9Control_CNhs14134_tpm_rev FibroGingivalD9- bigWig Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_reverse 1 2368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor9%20%28control%29.CNhs14134.11927-125I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11927-125I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD9-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor9Control_CNhs14134_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor9Control_CNhs14134_ctss_rev FibroGingivalD9- bigWig Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_reverse 0 2368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor9%20%28control%29.CNhs14134.11927-125I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11927-125I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD9-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor9Control_CNhs14134_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1\ urlLabel FANTOM5 Details:\ FibroblastLungDonor1_CNhs12500_tpm_fwd FibroLungD1+ bigWig Fibroblast - Lung, donor1_CNhs12500_11270-116H1_forward 1 2369 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor1.CNhs12500.11270-116H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lung, donor1_CNhs12500_11270-116H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11270-116H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLungD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLungDonor1_CNhs12500_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1\ urlLabel FANTOM5 Details:\ FibroblastLungDonor1_CNhs12500_ctss_fwd FibroLungD1+ bigWig Fibroblast - Lung, donor1_CNhs12500_11270-116H1_forward 0 2369 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor1.CNhs12500.11270-116H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lung, donor1_CNhs12500_11270-116H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11270-116H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLungD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLungDonor1_CNhs12500_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1\ urlLabel FANTOM5 Details:\ FibroblastLungDonor1_CNhs12500_tpm_rev FibroLungD1- bigWig Fibroblast - Lung, donor1_CNhs12500_11270-116H1_reverse 1 2370 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor1.CNhs12500.11270-116H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lung, donor1_CNhs12500_11270-116H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11270-116H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLungD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLungDonor1_CNhs12500_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1\ urlLabel FANTOM5 Details:\ FibroblastLungDonor1_CNhs12500_ctss_rev FibroLungD1- bigWig Fibroblast - Lung, donor1_CNhs12500_11270-116H1_reverse 0 2370 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor1.CNhs12500.11270-116H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lung, donor1_CNhs12500_11270-116H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11270-116H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLungD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLungDonor1_CNhs12500_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1\ urlLabel FANTOM5 Details:\ FibroblastLungDonor2_CNhs11380_tpm_fwd FibroLungD2+ bigWig Fibroblast - Lung, donor2_CNhs11380_11347-117G6_forward 1 2371 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor2.CNhs11380.11347-117G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lung, donor2_CNhs11380_11347-117G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11347-117G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLungD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLungDonor2_CNhs11380_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6\ urlLabel FANTOM5 Details:\ FibroblastLungDonor2_CNhs11380_ctss_fwd FibroLungD2+ bigWig Fibroblast - Lung, donor2_CNhs11380_11347-117G6_forward 0 2371 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor2.CNhs11380.11347-117G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lung, donor2_CNhs11380_11347-117G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11347-117G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLungD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLungDonor2_CNhs11380_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6\ urlLabel FANTOM5 Details:\ FibroblastLungDonor2_CNhs11380_tpm_rev FibroLungD2- bigWig Fibroblast - Lung, donor2_CNhs11380_11347-117G6_reverse 1 2372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor2.CNhs11380.11347-117G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lung, donor2_CNhs11380_11347-117G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11347-117G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLungD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLungDonor2_CNhs11380_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6\ urlLabel FANTOM5 Details:\ FibroblastLungDonor2_CNhs11380_ctss_rev FibroLungD2- bigWig Fibroblast - Lung, donor2_CNhs11380_11347-117G6_reverse 0 2372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor2.CNhs11380.11347-117G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lung, donor2_CNhs11380_11347-117G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11347-117G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLungD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLungDonor2_CNhs11380_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6\ urlLabel FANTOM5 Details:\ FibroblastLungDonor3_CNhs12029_tpm_fwd FibroLungD3+ bigWig Fibroblast - Lung, donor3_CNhs12029_11419-118F6_forward 1 2373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor3.CNhs12029.11419-118F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lung, donor3_CNhs12029_11419-118F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11419-118F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLungD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLungDonor3_CNhs12029_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6\ urlLabel FANTOM5 Details:\ FibroblastLungDonor3_CNhs12029_ctss_fwd FibroLungD3+ bigWig Fibroblast - Lung, donor3_CNhs12029_11419-118F6_forward 0 2373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor3.CNhs12029.11419-118F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lung, donor3_CNhs12029_11419-118F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11419-118F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLungD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLungDonor3_CNhs12029_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6\ urlLabel FANTOM5 Details:\ FibroblastLungDonor3_CNhs12029_tpm_rev FibroLungD3- bigWig Fibroblast - Lung, donor3_CNhs12029_11419-118F6_reverse 1 2374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor3.CNhs12029.11419-118F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lung, donor3_CNhs12029_11419-118F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11419-118F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLungD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLungDonor3_CNhs12029_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6\ urlLabel FANTOM5 Details:\ FibroblastLungDonor3_CNhs12029_ctss_rev FibroLungD3- bigWig Fibroblast - Lung, donor3_CNhs12029_11419-118F6_reverse 0 2374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor3.CNhs12029.11419-118F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lung, donor3_CNhs12029_11419-118F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11419-118F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLungD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLungDonor3_CNhs12029_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor1_CNhs11322_tpm_fwd FibroLymphaticD1+ bigWig Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_forward 1 2375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor1.CNhs11322.11506-119G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11506-119G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLymphaticD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLymphaticDonor1_CNhs11322_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor1_CNhs11322_ctss_fwd FibroLymphaticD1+ bigWig Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_forward 0 2375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor1.CNhs11322.11506-119G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11506-119G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLymphaticD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLymphaticDonor1_CNhs11322_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor1_CNhs11322_tpm_rev FibroLymphaticD1- bigWig Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_reverse 1 2376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor1.CNhs11322.11506-119G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11506-119G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLymphaticD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLymphaticDonor1_CNhs11322_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor1_CNhs11322_ctss_rev FibroLymphaticD1- bigWig Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_reverse 0 2376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor1.CNhs11322.11506-119G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11506-119G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLymphaticD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLymphaticDonor1_CNhs11322_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor2_CNhs12082_tpm_fwd FibroLymphaticD2+ bigWig Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_forward 1 2377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor2.CNhs12082.11586-120G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11586-120G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLymphaticD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLymphaticDonor2_CNhs12082_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor2_CNhs12082_ctss_fwd FibroLymphaticD2+ bigWig Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_forward 0 2377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor2.CNhs12082.11586-120G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11586-120G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLymphaticD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLymphaticDonor2_CNhs12082_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor2_CNhs12082_tpm_rev FibroLymphaticD2- bigWig Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_reverse 1 2378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor2.CNhs12082.11586-120G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11586-120G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLymphaticD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLymphaticDonor2_CNhs12082_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor2_CNhs12082_ctss_rev FibroLymphaticD2- bigWig Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_reverse 0 2378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor2.CNhs12082.11586-120G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11586-120G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLymphaticD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLymphaticDonor2_CNhs12082_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor3_CNhs12118_tpm_fwd FibroLymphaticD3+ bigWig Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_forward 1 2379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor3.CNhs12118.11667-122G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11667-122G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLymphaticD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLymphaticDonor3_CNhs12118_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor3_CNhs12118_ctss_fwd FibroLymphaticD3+ bigWig Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_forward 0 2379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor3.CNhs12118.11667-122G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11667-122G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLymphaticD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLymphaticDonor3_CNhs12118_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor3_CNhs12118_tpm_rev FibroLymphaticD3- bigWig Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_reverse 1 2380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor3.CNhs12118.11667-122G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11667-122G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLymphaticD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLymphaticDonor3_CNhs12118_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor3_CNhs12118_ctss_rev FibroLymphaticD3- bigWig Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_reverse 0 2380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor3.CNhs12118.11667-122G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11667-122G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLymphaticD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLymphaticDonor3_CNhs12118_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor1_CNhs11348_tpm_fwd FibroMammaryD1+ bigWig Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_forward 1 2381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor1.CNhs11348.11540-120B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11540-120B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroMammaryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastMammaryDonor1_CNhs11348_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor1_CNhs11348_ctss_fwd FibroMammaryD1+ bigWig Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_forward 0 2381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor1.CNhs11348.11540-120B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11540-120B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroMammaryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastMammaryDonor1_CNhs11348_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor1_CNhs11348_tpm_rev FibroMammaryD1- bigWig Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_reverse 1 2382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor1.CNhs11348.11540-120B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11540-120B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroMammaryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastMammaryDonor1_CNhs11348_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor1_CNhs11348_ctss_rev FibroMammaryD1- bigWig Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_reverse 0 2382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor1.CNhs11348.11540-120B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11540-120B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroMammaryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastMammaryDonor1_CNhs11348_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor2_CNhs12103_tpm_fwd FibroMammaryD2+ bigWig Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_forward 1 2383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor2.CNhs12103.11620-122A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11620-122A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroMammaryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastMammaryDonor2_CNhs12103_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor2_CNhs12103_ctss_fwd FibroMammaryD2+ bigWig Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_forward 0 2383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor2.CNhs12103.11620-122A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11620-122A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroMammaryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastMammaryDonor2_CNhs12103_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor2_CNhs12103_tpm_rev FibroMammaryD2- bigWig Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_reverse 1 2384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor2.CNhs12103.11620-122A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11620-122A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroMammaryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastMammaryDonor2_CNhs12103_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor2_CNhs12103_ctss_rev FibroMammaryD2- bigWig Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_reverse 0 2384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor2.CNhs12103.11620-122A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11620-122A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroMammaryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastMammaryDonor2_CNhs12103_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor3_CNhs12128_tpm_fwd FibroMammaryD3+ bigWig Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_forward 1 2385 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor3.CNhs12128.11701-123A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11701-123A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroMammaryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastMammaryDonor3_CNhs12128_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor3_CNhs12128_ctss_fwd FibroMammaryD3+ bigWig Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_forward 0 2385 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor3.CNhs12128.11701-123A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11701-123A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroMammaryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastMammaryDonor3_CNhs12128_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor3_CNhs12128_tpm_rev FibroMammaryD3- bigWig Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_reverse 1 2386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor3.CNhs12128.11701-123A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11701-123A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroMammaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastMammaryDonor3_CNhs12128_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor3_CNhs12128_ctss_rev FibroMammaryD3- bigWig Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_reverse 0 2386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor3.CNhs12128.11701-123A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11701-123A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroMammaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastMammaryDonor3_CNhs12128_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor1_CNhs10867_tpm_fwd FibroPeriodontalLigamentD1+ bigWig Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_forward 1 2387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor1.CNhs10867.11238-116D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11238-116D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor1_CNhs10867_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor1_CNhs10867_ctss_fwd FibroPeriodontalLigamentD1+ bigWig Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_forward 0 2387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor1.CNhs10867.11238-116D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11238-116D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor1_CNhs10867_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor1_CNhs10867_tpm_rev FibroPeriodontalLigamentD1- bigWig Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_reverse 1 2388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor1.CNhs10867.11238-116D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11238-116D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor1_CNhs10867_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor1_CNhs10867_ctss_rev FibroPeriodontalLigamentD1- bigWig Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_reverse 0 2388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor1.CNhs10867.11238-116D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11238-116D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor1_CNhs10867_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor2_CNhs11962_tpm_fwd FibroPeriodontalLigamentD2+ bigWig Fibroblast - Periodontal Ligament, donor2_CNhs11962_11319-117D5_forward 1 2389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11319-117D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor2.CNhs11962.11319-117D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor2_CNhs11962_11319-117D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11319-117D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor2_CNhs11962_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11319-117D5\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor2_CNhs11962_ctss_fwd FibroPeriodontalLigamentD2+ bigWig Fibroblast - Periodontal Ligament, donor2_CNhs11962_11319-117D5_forward 0 2389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11319-117D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor2.CNhs11962.11319-117D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor2_CNhs11962_11319-117D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11319-117D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor2_CNhs11962_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11319-117D5\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor2_CNhs11962_tpm_rev FibroPeriodontalLigamentD2- bigWig Fibroblast - Periodontal Ligament, donor2_CNhs11962_11319-117D5_reverse 1 2390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11319-117D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor2.CNhs11962.11319-117D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor2_CNhs11962_11319-117D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11319-117D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor2_CNhs11962_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11319-117D5\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor2_CNhs11962_ctss_rev FibroPeriodontalLigamentD2- bigWig Fibroblast - Periodontal Ligament, donor2_CNhs11962_11319-117D5_reverse 0 2390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11319-117D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor2.CNhs11962.11319-117D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor2_CNhs11962_11319-117D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11319-117D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor2_CNhs11962_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11319-117D5\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor3_CNhs11907_tpm_fwd FibroPeriodontalLigamentD3+ bigWig Fibroblast - Periodontal Ligament, donor3_CNhs11907_11395-118C9_forward 1 2391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11395-118C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor3.CNhs11907.11395-118C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor3_CNhs11907_11395-118C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11395-118C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor3_CNhs11907_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11395-118C9\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor3_CNhs11907_ctss_fwd FibroPeriodontalLigamentD3+ bigWig Fibroblast - Periodontal Ligament, donor3_CNhs11907_11395-118C9_forward 0 2391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11395-118C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor3.CNhs11907.11395-118C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor3_CNhs11907_11395-118C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11395-118C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor3_CNhs11907_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11395-118C9\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor3_CNhs11907_tpm_rev FibroPeriodontalLigamentD3- bigWig Fibroblast - Periodontal Ligament, donor3_CNhs11907_11395-118C9_reverse 1 2392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11395-118C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor3.CNhs11907.11395-118C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor3_CNhs11907_11395-118C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11395-118C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor3_CNhs11907_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11395-118C9\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor3_CNhs11907_ctss_rev FibroPeriodontalLigamentD3- bigWig Fibroblast - Periodontal Ligament, donor3_CNhs11907_11395-118C9_reverse 0 2392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11395-118C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor3.CNhs11907.11395-118C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor3_CNhs11907_11395-118C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11395-118C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor3_CNhs11907_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11395-118C9\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor4PL29_CNhs12493_tpm_fwd FibroPeriodontalLigamentD4+ bigWig Fibroblast - Periodontal Ligament, donor4 (PL29)_CNhs12493_11223-116B8_forward 1 2393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11223-116B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor4%20%28PL29%29.CNhs12493.11223-116B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor4 (PL29)_CNhs12493_11223-116B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11223-116B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor4PL29_CNhs12493_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11223-116B8\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor4PL29_CNhs12493_ctss_fwd FibroPeriodontalLigamentD4+ bigWig Fibroblast - Periodontal Ligament, donor4 (PL29)_CNhs12493_11223-116B8_forward 0 2393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11223-116B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor4%20%28PL29%29.CNhs12493.11223-116B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor4 (PL29)_CNhs12493_11223-116B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11223-116B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor4PL29_CNhs12493_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11223-116B8\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor4PL29_CNhs12493_tpm_rev FibroPeriodontalLigamentD4- bigWig Fibroblast - Periodontal Ligament, donor4 (PL29)_CNhs12493_11223-116B8_reverse 1 2394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11223-116B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor4%20%28PL29%29.CNhs12493.11223-116B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor4 (PL29)_CNhs12493_11223-116B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11223-116B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor4PL29_CNhs12493_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11223-116B8\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor4PL29_CNhs12493_ctss_rev FibroPeriodontalLigamentD4- bigWig Fibroblast - Periodontal Ligament, donor4 (PL29)_CNhs12493_11223-116B8_reverse 0 2394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11223-116B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor4%20%28PL29%29.CNhs12493.11223-116B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor4 (PL29)_CNhs12493_11223-116B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11223-116B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor4PL29_CNhs12493_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11223-116B8\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor5PL30_CNhs11953_tpm_fwd FibroPeriodontalLigamentD5+ bigWig Fibroblast - Periodontal Ligament, donor5 (PL30)_CNhs11953_11304-117B8_forward 1 2395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11304-117B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor5%20%28PL30%29.CNhs11953.11304-117B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor5 (PL30)_CNhs11953_11304-117B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11304-117B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor5PL30_CNhs11953_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11304-117B8\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor5PL30_CNhs11953_ctss_fwd FibroPeriodontalLigamentD5+ bigWig Fibroblast - Periodontal Ligament, donor5 (PL30)_CNhs11953_11304-117B8_forward 0 2395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11304-117B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor5%20%28PL30%29.CNhs11953.11304-117B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor5 (PL30)_CNhs11953_11304-117B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11304-117B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor5PL30_CNhs11953_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11304-117B8\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor5PL30_CNhs11953_tpm_rev FibroPeriodontalLigamentD5- bigWig Fibroblast - 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/gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor3.CNhs11913.11560-120D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin dystrophia myotonica, donor3_CNhs11913_11560-120D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11560-120D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinDystrophiaMyotonicaDonor3_CNhs11913_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11560-120D3\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor3_CNhs11913_ctss_rev FibroSkinDystrophiaMyotonicaNucfracD3- bigWig Fibroblast - skin dystrophia myotonica, donor3_CNhs11913_11560-120D3_reverse 0 2406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11560-120D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor3.CNhs11913.11560-120D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin dystrophia myotonica, donor3_CNhs11913_11560-120D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11560-120D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinDystrophiaMyotonicaDonor3_CNhs11913_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11560-120D3\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor1_CNhs11351_tpm_fwd FibroSkinNormalNucfracD1+ bigWig Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_forward 1 2407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor1.CNhs11351.11553-120C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11553-120C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinNormalNucfracD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinNormalDonor1_CNhs11351_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor1_CNhs11351_ctss_fwd FibroSkinNormalNucfracD1+ bigWig Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_forward 0 2407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor1.CNhs11351.11553-120C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11553-120C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinNormalNucfracD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinNormalDonor1_CNhs11351_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor1_CNhs11351_tpm_rev FibroSkinNormalNucfracD1- bigWig Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_reverse 1 2408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor1.CNhs11351.11553-120C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11553-120C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinNormalNucfracD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinNormalDonor1_CNhs11351_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor1_CNhs11351_ctss_rev FibroSkinNormalNucfracD1- bigWig Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_reverse 0 2408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor1.CNhs11351.11553-120C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11553-120C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinNormalNucfracD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinNormalDonor1_CNhs11351_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor2_CNhs11914_tpm_fwd FibroSkinNormalNucfracD2+ bigWig Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_forward 1 2409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor2.CNhs11914.11561-120D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11561-120D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinNormalNucfracD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinNormalDonor2_CNhs11914_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor2_CNhs11914_ctss_fwd FibroSkinNormalNucfracD2+ bigWig Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_forward 0 2409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor2.CNhs11914.11561-120D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11561-120D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinNormalNucfracD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinNormalDonor2_CNhs11914_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor2_CNhs11914_tpm_rev FibroSkinNormalNucfracD2- bigWig Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_reverse 1 2410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor2.CNhs11914.11561-120D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11561-120D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinNormalNucfracD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinNormalDonor2_CNhs11914_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor2_CNhs11914_ctss_rev FibroSkinNormalNucfracD2- bigWig Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_reverse 0 2410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor2.CNhs11914.11561-120D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11561-120D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinNormalNucfracD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinNormalDonor2_CNhs11914_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_tpm_fwd FibroSkinSpinalMuscularAtrophyNucfracD1+ bigWig Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_forward 1 2411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor1.CNhs11074.11555-120C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11555-120C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_ctss_fwd FibroSkinSpinalMuscularAtrophyNucfracD1+ bigWig Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_forward 0 2411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor1.CNhs11074.11555-120C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11555-120C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_tpm_rev FibroSkinSpinalMuscularAtrophyNucfracD1- bigWig Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_reverse 1 2412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor1.CNhs11074.11555-120C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11555-120C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_ctss_rev FibroSkinSpinalMuscularAtrophyNucfracD1- bigWig Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_reverse 0 2412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor1.CNhs11074.11555-120C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11555-120C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_tpm_fwd FibroSkinSpinalMuscularAtrophyNucfracD2+ bigWig Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_forward 1 2413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor2.CNhs11911.11558-120D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11558-120D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_ctss_fwd FibroSkinSpinalMuscularAtrophyNucfracD2+ bigWig Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_forward 0 2413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor2.CNhs11911.11558-120D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11558-120D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_tpm_rev FibroSkinSpinalMuscularAtrophyNucfracD2- bigWig Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_reverse 1 2414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor2.CNhs11911.11558-120D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11558-120D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_ctss_rev FibroSkinSpinalMuscularAtrophyNucfracD2- bigWig Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_reverse 0 2414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor2.CNhs11911.11558-120D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11558-120D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_tpm_fwd FibroSkinSpinalMuscularAtrophyNucfracD3+ bigWig Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_forward 1 2415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor3.CNhs11912.11559-120D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11559-120D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_ctss_fwd FibroSkinSpinalMuscularAtrophyNucfracD3+ bigWig Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_forward 0 2415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor3.CNhs11912.11559-120D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11559-120D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_tpm_rev FibroSkinSpinalMuscularAtrophyNucfracD3- bigWig Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_reverse 1 2416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor3.CNhs11912.11559-120D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11559-120D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_ctss_rev FibroSkinSpinalMuscularAtrophyNucfracD3- bigWig Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_reverse 0 2416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor3.CNhs11912.11559-120D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11559-120D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2\ urlLabel FANTOM5 Details:\ FibroblastSkinWalkerWarburgDonor1_CNhs11352_tpm_fwd FibroSkinWalkerWarburgD1+ bigWig Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_forward 1 2417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20walker%20warburg%2c%20donor1.CNhs11352.11554-120C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11554-120C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinWalkerWarburgD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinWalkerWarburgDonor1_CNhs11352_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6\ urlLabel FANTOM5 Details:\ FibroblastSkinWalkerWarburgDonor1_CNhs11352_ctss_fwd FibroSkinWalkerWarburgD1+ bigWig Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_forward 0 2417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20walker%20warburg%2c%20donor1.CNhs11352.11554-120C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11554-120C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinWalkerWarburgD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinWalkerWarburgDonor1_CNhs11352_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6\ urlLabel FANTOM5 Details:\ FibroblastSkinWalkerWarburgDonor1_CNhs11352_tpm_rev FibroSkinWalkerWarburgD1- bigWig Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_reverse 1 2418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20walker%20warburg%2c%20donor1.CNhs11352.11554-120C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11554-120C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinWalkerWarburgD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinWalkerWarburgDonor1_CNhs11352_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6\ urlLabel FANTOM5 Details:\ FibroblastSkinWalkerWarburgDonor1_CNhs11352_ctss_rev FibroSkinWalkerWarburgD1- bigWig Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_reverse 0 2418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20walker%20warburg%2c%20donor1.CNhs11352.11554-120C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11554-120C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinWalkerWarburgD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinWalkerWarburgDonor1_CNhs11352_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor1_CNhs11343_tpm_fwd FibroVillousMesenchymalD1+ bigWig Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_forward 1 2419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor1.CNhs11343.11535-120A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11535-120A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroVillousMesenchymalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastVillousMesenchymalDonor1_CNhs11343_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor1_CNhs11343_ctss_fwd FibroVillousMesenchymalD1+ bigWig Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_forward 0 2419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor1.CNhs11343.11535-120A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11535-120A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroVillousMesenchymalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastVillousMesenchymalDonor1_CNhs11343_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor1_CNhs11343_tpm_rev FibroVillousMesenchymalD1- bigWig Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_reverse 1 2420 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor1.CNhs11343.11535-120A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11535-120A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroVillousMesenchymalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastVillousMesenchymalDonor1_CNhs11343_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor1_CNhs11343_ctss_rev FibroVillousMesenchymalD1- bigWig Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_reverse 0 2420 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor1.CNhs11343.11535-120A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11535-120A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroVillousMesenchymalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastVillousMesenchymalDonor1_CNhs11343_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor2_CNhs12099_tpm_fwd FibroVillousMesenchymalD2+ bigWig Fibroblast - Villous Mesenchymal, donor2_CNhs12099_11615-122A4_forward 1 2421 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11615-122A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor2.CNhs12099.11615-122A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Villous Mesenchymal, donor2_CNhs12099_11615-122A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11615-122A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroVillousMesenchymalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastVillousMesenchymalDonor2_CNhs12099_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11615-122A4\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor2_CNhs12099_ctss_fwd FibroVillousMesenchymalD2+ bigWig Fibroblast - Villous Mesenchymal, donor2_CNhs12099_11615-122A4_forward 0 2421 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11615-122A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor2.CNhs12099.11615-122A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Villous Mesenchymal, donor2_CNhs12099_11615-122A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11615-122A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroVillousMesenchymalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastVillousMesenchymalDonor2_CNhs12099_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11615-122A4\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor2_CNhs12099_tpm_rev FibroVillousMesenchymalD2- bigWig Fibroblast - Villous Mesenchymal, donor2_CNhs12099_11615-122A4_reverse 1 2422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11615-122A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor2.CNhs12099.11615-122A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Villous Mesenchymal, donor2_CNhs12099_11615-122A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11615-122A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroVillousMesenchymalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastVillousMesenchymalDonor2_CNhs12099_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11615-122A4\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor2_CNhs12099_ctss_rev FibroVillousMesenchymalD2- bigWig Fibroblast - Villous Mesenchymal, donor2_CNhs12099_11615-122A4_reverse 0 2422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11615-122A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor2.CNhs12099.11615-122A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Villous Mesenchymal, donor2_CNhs12099_11615-122A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11615-122A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroVillousMesenchymalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastVillousMesenchymalDonor2_CNhs12099_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11615-122A4\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor3_CNhs12920_tpm_fwd FibroVillousMesenchymalD3+ bigWig Fibroblast - Villous Mesenchymal, donor3_CNhs12920_11696-123A4_forward 1 2423 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11696-123A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor3.CNhs12920.11696-123A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Villous Mesenchymal, donor3_CNhs12920_11696-123A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11696-123A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroVillousMesenchymalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastVillousMesenchymalDonor3_CNhs12920_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11696-123A4\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor3_CNhs12920_ctss_fwd FibroVillousMesenchymalD3+ bigWig Fibroblast - Villous Mesenchymal, donor3_CNhs12920_11696-123A4_forward 0 2423 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11696-123A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor3.CNhs12920.11696-123A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Villous Mesenchymal, donor3_CNhs12920_11696-123A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11696-123A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroVillousMesenchymalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastVillousMesenchymalDonor3_CNhs12920_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11696-123A4\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor3_CNhs12920_tpm_rev FibroVillousMesenchymalD3- bigWig Fibroblast - Villous Mesenchymal, donor3_CNhs12920_11696-123A4_reverse 1 2424 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11696-123A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor3.CNhs12920.11696-123A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Villous Mesenchymal, donor3_CNhs12920_11696-123A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11696-123A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroVillousMesenchymalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastVillousMesenchymalDonor3_CNhs12920_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11696-123A4\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor3_CNhs12920_ctss_rev FibroVillousMesenchymalD3- bigWig Fibroblast - Villous Mesenchymal, donor3_CNhs12920_11696-123A4_reverse 0 2424 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11696-123A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor3.CNhs12920.11696-123A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Villous Mesenchymal, donor3_CNhs12920_11696-123A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11696-123A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroVillousMesenchymalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastVillousMesenchymalDonor3_CNhs12920_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11696-123A4\ urlLabel FANTOM5 Details:\ GammaDeltaPositiveTCellsDonor1_CNhs13914_tpm_fwd GammaDeltaTcellsD1+ bigWig gamma delta positive T cells, donor1_CNhs13914_11937-126A2_forward 1 2425 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11937-126A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gamma%20delta%20positive%20T%20cells%2c%20donor1.CNhs13914.11937-126A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel gamma delta positive T cells, donor1_CNhs13914_11937-126A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11937-126A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GammaDeltaTcellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track GammaDeltaPositiveTCellsDonor1_CNhs13914_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11937-126A2\ urlLabel FANTOM5 Details:\ GammaDeltaPositiveTCellsDonor1_CNhs13914_ctss_fwd GammaDeltaTcellsD1+ bigWig gamma delta positive T cells, donor1_CNhs13914_11937-126A2_forward 0 2425 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11937-126A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gamma%20delta%20positive%20T%20cells%2c%20donor1.CNhs13914.11937-126A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel gamma delta positive T cells, donor1_CNhs13914_11937-126A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11937-126A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GammaDeltaTcellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track GammaDeltaPositiveTCellsDonor1_CNhs13914_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11937-126A2\ urlLabel FANTOM5 Details:\ GammaDeltaPositiveTCellsDonor1_CNhs13914_tpm_rev GammaDeltaTcellsD1- bigWig gamma delta positive T cells, donor1_CNhs13914_11937-126A2_reverse 1 2426 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11937-126A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gamma%20delta%20positive%20T%20cells%2c%20donor1.CNhs13914.11937-126A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel gamma delta positive T cells, donor1_CNhs13914_11937-126A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11937-126A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GammaDeltaTcellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track GammaDeltaPositiveTCellsDonor1_CNhs13914_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11937-126A2\ urlLabel FANTOM5 Details:\ GammaDeltaPositiveTCellsDonor1_CNhs13914_ctss_rev GammaDeltaTcellsD1- bigWig gamma delta positive T cells, donor1_CNhs13914_11937-126A2_reverse 0 2426 0 0 255 127 127 255 0 0 0 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track HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_ctss_fwd HepaticSinusoidalEndothelialCellsD2+ bigWig Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_forward 0 2447 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor2.CNhs12092.11601-120H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11601-120H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticSinusoidalEndothelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_tpm_rev HepaticSinusoidalEndothelialCellsD2- bigWig Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_reverse 1 2448 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor2.CNhs12092.11601-120H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11601-120H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticSinusoidalEndothelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_ctss_rev HepaticSinusoidalEndothelialCellsD2- bigWig Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_reverse 0 2448 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor2.CNhs12092.11601-120H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11601-120H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticSinusoidalEndothelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_tpm_fwd HepaticSinusoidalEndothelialCellsD3+ bigWig Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_forward 1 2449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor3.CNhs12625.11682-122H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11682-122H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticSinusoidalEndothelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_ctss_fwd HepaticSinusoidalEndothelialCellsD3+ bigWig Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_forward 0 2449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor3.CNhs12625.11682-122H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11682-122H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticSinusoidalEndothelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_tpm_rev HepaticSinusoidalEndothelialCellsD3- bigWig Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_reverse 1 2450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor3.CNhs12625.11682-122H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11682-122H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticSinusoidalEndothelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_ctss_rev HepaticSinusoidalEndothelialCellsD3- bigWig Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_reverse 0 2450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor3.CNhs12625.11682-122H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11682-122H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticSinusoidalEndothelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor1_CNhs11335_tpm_fwd HepaticStellateCellsD1+ bigWig Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_forward 1 2451 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor1.CNhs11335.11524-119I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11524-119I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticStellateCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticStellateCellsLipocyteDonor1_CNhs11335_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor1_CNhs11335_ctss_fwd HepaticStellateCellsD1+ bigWig Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_forward 0 2451 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor1.CNhs11335.11524-119I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11524-119I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticStellateCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticStellateCellsLipocyteDonor1_CNhs11335_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor1_CNhs11335_tpm_rev HepaticStellateCellsD1- bigWig Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_reverse 1 2452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor1.CNhs11335.11524-119I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11524-119I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticStellateCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticStellateCellsLipocyteDonor1_CNhs11335_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor1_CNhs11335_ctss_rev HepaticStellateCellsD1- bigWig Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_reverse 0 2452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor1.CNhs11335.11524-119I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11524-119I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticStellateCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticStellateCellsLipocyteDonor1_CNhs11335_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor2_CNhs12093_tpm_fwd HepaticStellateCellsD2+ bigWig Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_forward 1 2453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor2.CNhs12093.11604-120I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11604-120I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticStellateCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticStellateCellsLipocyteDonor2_CNhs12093_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor2_CNhs12093_ctss_fwd HepaticStellateCellsD2+ bigWig Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_forward 0 2453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor2.CNhs12093.11604-120I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11604-120I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticStellateCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticStellateCellsLipocyteDonor2_CNhs12093_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor2_CNhs12093_tpm_rev HepaticStellateCellsD2- bigWig Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_reverse 1 2454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor2.CNhs12093.11604-120I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11604-120I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticStellateCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticStellateCellsLipocyteDonor2_CNhs12093_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor2_CNhs12093_ctss_rev HepaticStellateCellsD2- bigWig Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_reverse 0 2454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor2.CNhs12093.11604-120I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11604-120I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticStellateCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticStellateCellsLipocyteDonor2_CNhs12093_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor3_CNhs12627_tpm_fwd HepaticStellateCellsD3+ bigWig Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_forward 1 2455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor3.CNhs12627.11685-122I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11685-122I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticStellateCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticStellateCellsLipocyteDonor3_CNhs12627_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor3_CNhs12627_ctss_fwd HepaticStellateCellsD3+ bigWig Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_forward 0 2455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor3.CNhs12627.11685-122I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11685-122I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticStellateCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticStellateCellsLipocyteDonor3_CNhs12627_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor3_CNhs12627_tpm_rev HepaticStellateCellsD3- bigWig Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_reverse 1 2456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor3.CNhs12627.11685-122I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11685-122I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticStellateCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticStellateCellsLipocyteDonor3_CNhs12627_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor3_CNhs12627_ctss_rev HepaticStellateCellsD3- bigWig Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_reverse 0 2456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor3.CNhs12627.11685-122I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11685-122I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticStellateCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticStellateCellsLipocyteDonor3_CNhs12627_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2\ urlLabel FANTOM5 Details:\ HepatocyteDonor1_CNhs12340_tpm_fwd HepatocyteD1+ bigWig Hepatocyte, donor1_CNhs12340_11523-119I2_forward 1 2457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor1.CNhs12340.11523-119I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatocyte, donor1_CNhs12340_11523-119I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11523-119I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepatocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepatocyteDonor1_CNhs12340_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2\ urlLabel FANTOM5 Details:\ HepatocyteDonor1_CNhs12340_ctss_fwd HepatocyteD1+ bigWig Hepatocyte, donor1_CNhs12340_11523-119I2_forward 0 2457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor1.CNhs12340.11523-119I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatocyte, donor1_CNhs12340_11523-119I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11523-119I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepatocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepatocyteDonor1_CNhs12340_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2\ urlLabel FANTOM5 Details:\ HepatocyteDonor1_CNhs12340_tpm_rev HepatocyteD1- bigWig Hepatocyte, donor1_CNhs12340_11523-119I2_reverse 1 2458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor1.CNhs12340.11523-119I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hepatocyte, donor1_CNhs12340_11523-119I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11523-119I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepatocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepatocyteDonor1_CNhs12340_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2\ urlLabel FANTOM5 Details:\ HepatocyteDonor1_CNhs12340_ctss_rev HepatocyteD1- bigWig Hepatocyte, donor1_CNhs12340_11523-119I2_reverse 0 2458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor1.CNhs12340.11523-119I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hepatocyte, donor1_CNhs12340_11523-119I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11523-119I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepatocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepatocyteDonor1_CNhs12340_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2\ urlLabel FANTOM5 Details:\ HepatocyteDonor2_CNhs12349_tpm_fwd HepatocyteD2+ bigWig Hepatocyte, donor2_CNhs12349_11603-120I1_forward 1 2459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor2.CNhs12349.11603-120I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatocyte, donor2_CNhs12349_11603-120I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11603-120I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepatocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepatocyteDonor2_CNhs12349_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1\ urlLabel FANTOM5 Details:\ HepatocyteDonor2_CNhs12349_ctss_fwd HepatocyteD2+ bigWig Hepatocyte, donor2_CNhs12349_11603-120I1_forward 0 2459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor2.CNhs12349.11603-120I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatocyte, donor2_CNhs12349_11603-120I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11603-120I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepatocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepatocyteDonor2_CNhs12349_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1\ urlLabel FANTOM5 Details:\ HepatocyteDonor2_CNhs12349_tpm_rev HepatocyteD2- bigWig Hepatocyte, donor2_CNhs12349_11603-120I1_reverse 1 2460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor2.CNhs12349.11603-120I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hepatocyte, donor2_CNhs12349_11603-120I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11603-120I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepatocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepatocyteDonor2_CNhs12349_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1\ urlLabel FANTOM5 Details:\ HepatocyteDonor2_CNhs12349_ctss_rev HepatocyteD2- bigWig Hepatocyte, donor2_CNhs12349_11603-120I1_reverse 0 2460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor2.CNhs12349.11603-120I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hepatocyte, donor2_CNhs12349_11603-120I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11603-120I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepatocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepatocyteDonor2_CNhs12349_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1\ urlLabel FANTOM5 Details:\ HepatocyteDonor3_CNhs12626_tpm_fwd HepatocyteD3+ bigWig Hepatocyte, donor3_CNhs12626_11684-122I1_forward 1 2461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor3.CNhs12626.11684-122I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatocyte, donor3_CNhs12626_11684-122I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11684-122I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepatocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepatocyteDonor3_CNhs12626_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1\ urlLabel FANTOM5 Details:\ HepatocyteDonor3_CNhs12626_ctss_fwd HepatocyteD3+ bigWig Hepatocyte, donor3_CNhs12626_11684-122I1_forward 0 2461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor3.CNhs12626.11684-122I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatocyte, donor3_CNhs12626_11684-122I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11684-122I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepatocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepatocyteDonor3_CNhs12626_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1\ urlLabel FANTOM5 Details:\ HepatocyteDonor3_CNhs12626_tpm_rev HepatocyteD3- bigWig Hepatocyte, donor3_CNhs12626_11684-122I1_reverse 1 2462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor3.CNhs12626.11684-122I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hepatocyte, donor3_CNhs12626_11684-122I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11684-122I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepatocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepatocyteDonor3_CNhs12626_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1\ urlLabel FANTOM5 Details:\ HepatocyteDonor3_CNhs12626_ctss_rev HepatocyteD3- bigWig Hepatocyte, donor3_CNhs12626_11684-122I1_reverse 0 2462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor3.CNhs12626.11684-122I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hepatocyte, donor3_CNhs12626_11684-122I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11684-122I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepatocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepatocyteDonor3_CNhs12626_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1\ urlLabel FANTOM5 Details:\ ImmatureLangerhansCellsDonor1_CNhs13537_tpm_fwd ImmatureLangerhansCellsD1+ bigWig immature langerhans cells, donor1_CNhs13537_11904-125F5_forward 1 2463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/immature%20langerhans%20cells%2c%20donor1.CNhs13537.11904-125F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel immature langerhans cells, donor1_CNhs13537_11904-125F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11904-125F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ImmatureLangerhansCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ImmatureLangerhansCellsDonor1_CNhs13537_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5\ urlLabel FANTOM5 Details:\ ImmatureLangerhansCellsDonor1_CNhs13537_ctss_fwd ImmatureLangerhansCellsD1+ bigWig immature langerhans cells, donor1_CNhs13537_11904-125F5_forward 0 2463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/immature%20langerhans%20cells%2c%20donor1.CNhs13537.11904-125F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel immature langerhans cells, donor1_CNhs13537_11904-125F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11904-125F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ImmatureLangerhansCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ImmatureLangerhansCellsDonor1_CNhs13537_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5\ urlLabel FANTOM5 Details:\ ImmatureLangerhansCellsDonor1_CNhs13537_tpm_rev ImmatureLangerhansCellsD1- bigWig immature langerhans cells, donor1_CNhs13537_11904-125F5_reverse 1 2464 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/immature%20langerhans%20cells%2c%20donor1.CNhs13537.11904-125F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel immature langerhans cells, donor1_CNhs13537_11904-125F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11904-125F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ImmatureLangerhansCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ImmatureLangerhansCellsDonor1_CNhs13537_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5\ urlLabel FANTOM5 Details:\ ImmatureLangerhansCellsDonor1_CNhs13537_ctss_rev ImmatureLangerhansCellsD1- bigWig immature langerhans cells, donor1_CNhs13537_11904-125F5_reverse 0 2464 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/immature%20langerhans%20cells%2c%20donor1.CNhs13537.11904-125F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel immature langerhans cells, donor1_CNhs13537_11904-125F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11904-125F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ImmatureLangerhansCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ImmatureLangerhansCellsDonor1_CNhs13537_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5\ urlLabel FANTOM5 Details:\ ImmatureLangerhansCellsDonor2_CNhs13480_tpm_fwd ImmatureLangerhansCellsD2+ bigWig immature langerhans cells, donor2_CNhs13480_11905-125F6_forward 1 2465 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/immature%20langerhans%20cells%2c%20donor2.CNhs13480.11905-125F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel immature langerhans cells, donor2_CNhs13480_11905-125F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11905-125F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ImmatureLangerhansCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ImmatureLangerhansCellsDonor2_CNhs13480_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6\ urlLabel FANTOM5 Details:\ ImmatureLangerhansCellsDonor2_CNhs13480_ctss_fwd ImmatureLangerhansCellsD2+ bigWig immature langerhans cells, donor2_CNhs13480_11905-125F6_forward 0 2465 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/immature%20langerhans%20cells%2c%20donor2.CNhs13480.11905-125F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel immature langerhans cells, donor2_CNhs13480_11905-125F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11905-125F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ImmatureLangerhansCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ImmatureLangerhansCellsDonor2_CNhs13480_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6\ urlLabel FANTOM5 Details:\ ImmatureLangerhansCellsDonor2_CNhs13480_tpm_rev ImmatureLangerhansCellsD2- bigWig immature langerhans cells, donor2_CNhs13480_11905-125F6_reverse 1 2466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/immature%20langerhans%20cells%2c%20donor2.CNhs13480.11905-125F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel immature langerhans cells, donor2_CNhs13480_11905-125F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11905-125F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ImmatureLangerhansCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ImmatureLangerhansCellsDonor2_CNhs13480_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6\ urlLabel FANTOM5 Details:\ ImmatureLangerhansCellsDonor2_CNhs13480_ctss_rev ImmatureLangerhansCellsD2- bigWig immature langerhans cells, donor2_CNhs13480_11905-125F6_reverse 0 2466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/immature%20langerhans%20cells%2c%20donor2.CNhs13480.11905-125F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel immature langerhans cells, donor2_CNhs13480_11905-125F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11905-125F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ImmatureLangerhansCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ImmatureLangerhansCellsDonor2_CNhs13480_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6\ urlLabel FANTOM5 Details:\ IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_tpm_fwd IntestinalEpithelialCellsD1+ bigWig Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_forward 1 2467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Intestinal%20epithelial%20cells%20%28polarized%29%2c%20donor1.CNhs10875.11246-116E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11246-116E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IntestinalEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4\ urlLabel FANTOM5 Details:\ IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_ctss_fwd IntestinalEpithelialCellsD1+ bigWig Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_forward 0 2467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Intestinal%20epithelial%20cells%20%28polarized%29%2c%20donor1.CNhs10875.11246-116E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11246-116E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IntestinalEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4\ urlLabel FANTOM5 Details:\ IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_tpm_rev IntestinalEpithelialCellsD1- bigWig Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_reverse 1 2468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Intestinal%20epithelial%20cells%20%28polarized%29%2c%20donor1.CNhs10875.11246-116E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11246-116E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IntestinalEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4\ urlLabel FANTOM5 Details:\ IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_ctss_rev IntestinalEpithelialCellsD1- bigWig Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_reverse 0 2468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Intestinal%20epithelial%20cells%20%28polarized%29%2c%20donor1.CNhs10875.11246-116E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11246-116E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IntestinalEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4\ urlLabel FANTOM5 Details:\ IrisPigmentEpithelialCellsDonor1_CNhs12596_tpm_fwd IrisPigmentEpithelialCellsD1+ bigWig Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_forward 1 2469 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Iris%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs12596.11530-119I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11530-119I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IrisPigmentEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track IrisPigmentEpithelialCellsDonor1_CNhs12596_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9\ urlLabel FANTOM5 Details:\ IrisPigmentEpithelialCellsDonor1_CNhs12596_ctss_fwd IrisPigmentEpithelialCellsD1+ bigWig Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_forward 0 2469 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Iris%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs12596.11530-119I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11530-119I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IrisPigmentEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track IrisPigmentEpithelialCellsDonor1_CNhs12596_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9\ urlLabel FANTOM5 Details:\ IrisPigmentEpithelialCellsDonor1_CNhs12596_tpm_rev IrisPigmentEpithelialCellsD1- bigWig Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_reverse 1 2470 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Iris%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs12596.11530-119I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11530-119I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IrisPigmentEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track IrisPigmentEpithelialCellsDonor1_CNhs12596_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9\ urlLabel FANTOM5 Details:\ IrisPigmentEpithelialCellsDonor1_CNhs12596_ctss_rev IrisPigmentEpithelialCellsD1- bigWig Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_reverse 0 2470 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Iris%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs12596.11530-119I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11530-119I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IrisPigmentEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track IrisPigmentEpithelialCellsDonor1_CNhs12596_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor1_CNhs11064_tpm_fwd KeratinocyteEpidermalD1+ bigWig Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_forward 1 2471 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor1.CNhs11064.11272-116H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11272-116H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteEpidermalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteEpidermalDonor1_CNhs11064_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor1_CNhs11064_ctss_fwd KeratinocyteEpidermalD1+ bigWig Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_forward 0 2471 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor1.CNhs11064.11272-116H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11272-116H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteEpidermalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteEpidermalDonor1_CNhs11064_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor1_CNhs11064_tpm_rev KeratinocyteEpidermalD1- bigWig Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_reverse 1 2472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor1.CNhs11064.11272-116H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11272-116H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteEpidermalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteEpidermalDonor1_CNhs11064_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor1_CNhs11064_ctss_rev KeratinocyteEpidermalD1- bigWig Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_reverse 0 2472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor1.CNhs11064.11272-116H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11272-116H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteEpidermalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteEpidermalDonor1_CNhs11064_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor2_CNhs11381_tpm_fwd KeratinocyteEpidermalD2+ bigWig Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_forward 1 2473 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor2.CNhs11381.11349-117G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11349-117G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteEpidermalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteEpidermalDonor2_CNhs11381_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor2_CNhs11381_ctss_fwd KeratinocyteEpidermalD2+ bigWig Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_forward 0 2473 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor2.CNhs11381.11349-117G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11349-117G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteEpidermalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteEpidermalDonor2_CNhs11381_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor2_CNhs11381_tpm_rev KeratinocyteEpidermalD2- bigWig Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_reverse 1 2474 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor2.CNhs11381.11349-117G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11349-117G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteEpidermalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteEpidermalDonor2_CNhs11381_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor2_CNhs11381_ctss_rev KeratinocyteEpidermalD2- bigWig Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_reverse 0 2474 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor2.CNhs11381.11349-117G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11349-117G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteEpidermalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteEpidermalDonor2_CNhs11381_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor3_CNhs12031_tpm_fwd KeratinocyteEpidermalD3+ bigWig Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_forward 1 2475 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor3.CNhs12031.11421-118F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11421-118F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteEpidermalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteEpidermalDonor3_CNhs12031_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor3_CNhs12031_ctss_fwd KeratinocyteEpidermalD3+ bigWig Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_forward 0 2475 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor3.CNhs12031.11421-118F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11421-118F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteEpidermalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteEpidermalDonor3_CNhs12031_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor3_CNhs12031_tpm_rev KeratinocyteEpidermalD3- bigWig Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_reverse 1 2476 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor3.CNhs12031.11421-118F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11421-118F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteEpidermalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteEpidermalDonor3_CNhs12031_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor3_CNhs12031_ctss_rev KeratinocyteEpidermalD3- bigWig Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_reverse 0 2476 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor3.CNhs12031.11421-118F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11421-118F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteEpidermalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteEpidermalDonor3_CNhs12031_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8\ urlLabel FANTOM5 Details:\ KeratinocyteOralDonor1_CNhs10879_tpm_fwd KeratinocyteOralD1+ bigWig Keratinocyte - oral, donor1_CNhs10879_11251-116E9_forward 1 2477 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20oral%2c%20donor1.CNhs10879.11251-116E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - oral, donor1_CNhs10879_11251-116E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11251-116E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteOralD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteOralDonor1_CNhs10879_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9\ urlLabel FANTOM5 Details:\ KeratinocyteOralDonor1_CNhs10879_ctss_fwd KeratinocyteOralD1+ bigWig Keratinocyte - oral, donor1_CNhs10879_11251-116E9_forward 0 2477 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20oral%2c%20donor1.CNhs10879.11251-116E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - oral, donor1_CNhs10879_11251-116E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11251-116E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteOralD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteOralDonor1_CNhs10879_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9\ urlLabel FANTOM5 Details:\ KeratinocyteOralDonor1_CNhs10879_tpm_rev KeratinocyteOralD1- bigWig Keratinocyte - oral, donor1_CNhs10879_11251-116E9_reverse 1 2478 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20oral%2c%20donor1.CNhs10879.11251-116E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Keratinocyte - oral, donor1_CNhs10879_11251-116E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11251-116E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteOralD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteOralDonor1_CNhs10879_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9\ urlLabel FANTOM5 Details:\ KeratinocyteOralDonor1_CNhs10879_ctss_rev KeratinocyteOralD1- bigWig Keratinocyte - oral, donor1_CNhs10879_11251-116E9_reverse 0 2478 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20oral%2c%20donor1.CNhs10879.11251-116E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Keratinocyte - oral, donor1_CNhs10879_11251-116E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11251-116E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteOralD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteOralDonor1_CNhs10879_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9\ urlLabel FANTOM5 Details:\ KeratocytesDonor1_CNhs11337_tpm_fwd KeratocytesD1+ bigWig Keratocytes, donor1_CNhs11337_11527-119I6_forward 1 2479 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor1.CNhs11337.11527-119I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Keratocytes, donor1_CNhs11337_11527-119I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11527-119I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratocytesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratocytesDonor1_CNhs11337_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6\ urlLabel FANTOM5 Details:\ KeratocytesDonor1_CNhs11337_ctss_fwd KeratocytesD1+ bigWig Keratocytes, donor1_CNhs11337_11527-119I6_forward 0 2479 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor1.CNhs11337.11527-119I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Keratocytes, donor1_CNhs11337_11527-119I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11527-119I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratocytesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratocytesDonor1_CNhs11337_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6\ urlLabel FANTOM5 Details:\ KeratocytesDonor1_CNhs11337_tpm_rev KeratocytesD1- bigWig Keratocytes, donor1_CNhs11337_11527-119I6_reverse 1 2480 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor1.CNhs11337.11527-119I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Keratocytes, donor1_CNhs11337_11527-119I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11527-119I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratocytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratocytesDonor1_CNhs11337_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6\ urlLabel FANTOM5 Details:\ KeratocytesDonor1_CNhs11337_ctss_rev KeratocytesD1- bigWig Keratocytes, donor1_CNhs11337_11527-119I6_reverse 0 2480 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor1.CNhs11337.11527-119I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Keratocytes, donor1_CNhs11337_11527-119I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11527-119I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratocytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratocytesDonor1_CNhs11337_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6\ urlLabel FANTOM5 Details:\ KeratocytesDonor2_CNhs12095_tpm_fwd KeratocytesD2+ bigWig Keratocytes, donor2_CNhs12095_11607-120I5_forward 1 2481 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor2.CNhs12095.11607-120I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Keratocytes, donor2_CNhs12095_11607-120I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11607-120I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratocytesDonor2_CNhs12095_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5\ urlLabel FANTOM5 Details:\ KeratocytesDonor2_CNhs12095_ctss_fwd KeratocytesD2+ bigWig Keratocytes, donor2_CNhs12095_11607-120I5_forward 0 2481 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor2.CNhs12095.11607-120I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Keratocytes, donor2_CNhs12095_11607-120I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11607-120I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratocytesDonor2_CNhs12095_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5\ urlLabel FANTOM5 Details:\ KeratocytesDonor2_CNhs12095_tpm_rev KeratocytesD2- bigWig Keratocytes, donor2_CNhs12095_11607-120I5_reverse 1 2482 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor2.CNhs12095.11607-120I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Keratocytes, donor2_CNhs12095_11607-120I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11607-120I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratocytesDonor2_CNhs12095_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5\ urlLabel FANTOM5 Details:\ KeratocytesDonor2_CNhs12095_ctss_rev KeratocytesD2- bigWig Keratocytes, donor2_CNhs12095_11607-120I5_reverse 0 2482 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor2.CNhs12095.11607-120I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Keratocytes, donor2_CNhs12095_11607-120I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11607-120I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratocytesDonor2_CNhs12095_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5\ urlLabel FANTOM5 Details:\ KeratocytesDonor3_CNhs12921_tpm_fwd KeratocytesD3+ bigWig Keratocytes, donor3_CNhs12921_11688-122I5_forward 1 2483 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor3.CNhs12921.11688-122I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Keratocytes, donor3_CNhs12921_11688-122I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11688-122I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratocytesDonor3_CNhs12921_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5\ urlLabel FANTOM5 Details:\ KeratocytesDonor3_CNhs12921_ctss_fwd KeratocytesD3+ bigWig Keratocytes, donor3_CNhs12921_11688-122I5_forward 0 2483 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor3.CNhs12921.11688-122I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Keratocytes, donor3_CNhs12921_11688-122I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11688-122I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratocytesDonor3_CNhs12921_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5\ urlLabel FANTOM5 Details:\ KeratocytesDonor3_CNhs12921_tpm_rev KeratocytesD3- bigWig Keratocytes, donor3_CNhs12921_11688-122I5_reverse 1 2484 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor3.CNhs12921.11688-122I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Keratocytes, donor3_CNhs12921_11688-122I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11688-122I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratocytesDonor3_CNhs12921_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5\ urlLabel FANTOM5 Details:\ KeratocytesDonor3_CNhs12921_ctss_rev KeratocytesD3- bigWig Keratocytes, donor3_CNhs12921_11688-122I5_reverse 0 2484 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor3.CNhs12921.11688-122I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Keratocytes, donor3_CNhs12921_11688-122I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11688-122I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratocytesDonor3_CNhs12921_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor1_CNhs12342_tpm_fwd LensEpithelialCellsD1+ bigWig Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_forward 1 2485 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor1.CNhs12342.11529-119I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11529-119I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LensEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track LensEpithelialCellsDonor1_CNhs12342_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor1_CNhs12342_ctss_fwd LensEpithelialCellsD1+ bigWig Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_forward 0 2485 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor1.CNhs12342.11529-119I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11529-119I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LensEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track LensEpithelialCellsDonor1_CNhs12342_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor1_CNhs12342_tpm_rev LensEpithelialCellsD1- bigWig Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_reverse 1 2486 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor1.CNhs12342.11529-119I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11529-119I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LensEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track LensEpithelialCellsDonor1_CNhs12342_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor1_CNhs12342_ctss_rev LensEpithelialCellsD1- bigWig Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_reverse 0 2486 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor1.CNhs12342.11529-119I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11529-119I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LensEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track LensEpithelialCellsDonor1_CNhs12342_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor2_CNhs12568_tpm_fwd LensEpithelialCellsD2+ bigWig Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_forward 1 2487 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor2.CNhs12568.11609-120I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11609-120I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LensEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track LensEpithelialCellsDonor2_CNhs12568_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor2_CNhs12568_ctss_fwd LensEpithelialCellsD2+ bigWig Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_forward 0 2487 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor2.CNhs12568.11609-120I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11609-120I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LensEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track LensEpithelialCellsDonor2_CNhs12568_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor2_CNhs12568_tpm_rev LensEpithelialCellsD2- bigWig Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_reverse 1 2488 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor2.CNhs12568.11609-120I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11609-120I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LensEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track LensEpithelialCellsDonor2_CNhs12568_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor2_CNhs12568_ctss_rev LensEpithelialCellsD2- bigWig Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_reverse 0 2488 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor2.CNhs12568.11609-120I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11609-120I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LensEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track LensEpithelialCellsDonor2_CNhs12568_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor3_CNhs12572_tpm_fwd LensEpithelialCellsD3+ bigWig Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_forward 1 2489 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor3.CNhs12572.11690-122I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11690-122I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LensEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track LensEpithelialCellsDonor3_CNhs12572_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor3_CNhs12572_ctss_fwd LensEpithelialCellsD3+ bigWig Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_forward 0 2489 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor3.CNhs12572.11690-122I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11690-122I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LensEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track LensEpithelialCellsDonor3_CNhs12572_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor3_CNhs12572_tpm_rev LensEpithelialCellsD3- bigWig Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_reverse 1 2490 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor3.CNhs12572.11690-122I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11690-122I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LensEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track LensEpithelialCellsDonor3_CNhs12572_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor3_CNhs12572_ctss_rev LensEpithelialCellsD3- bigWig Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_reverse 0 2490 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor3.CNhs12572.11690-122I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11690-122I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LensEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track LensEpithelialCellsDonor3_CNhs12572_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor1_CNhs10861_tpm_fwd MacrophageMonocyteD1+ bigWig Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_forward 1 2491 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor1.CNhs10861.11232-116C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11232-116C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MacrophageMonocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MacrophageMonocyteDerivedDonor1_CNhs10861_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor1_CNhs10861_ctss_fwd MacrophageMonocyteD1+ bigWig Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_forward 0 2491 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor1.CNhs10861.11232-116C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11232-116C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MacrophageMonocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MacrophageMonocyteDerivedDonor1_CNhs10861_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor1_CNhs10861_tpm_rev MacrophageMonocyteD1- bigWig Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_reverse 1 2492 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor1.CNhs10861.11232-116C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11232-116C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MacrophageMonocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MacrophageMonocyteDerivedDonor1_CNhs10861_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor1_CNhs10861_ctss_rev MacrophageMonocyteD1- bigWig Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_reverse 0 2492 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor1.CNhs10861.11232-116C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11232-116C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MacrophageMonocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MacrophageMonocyteDerivedDonor1_CNhs10861_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor2_CNhs11899_tpm_fwd MacrophageMonocyteD2+ bigWig Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_forward 1 2493 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor2.CNhs11899.11313-117C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11313-117C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MacrophageMonocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MacrophageMonocyteDerivedDonor2_CNhs11899_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor2_CNhs11899_ctss_fwd MacrophageMonocyteD2+ bigWig Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_forward 0 2493 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor2.CNhs11899.11313-117C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11313-117C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MacrophageMonocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MacrophageMonocyteDerivedDonor2_CNhs11899_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor2_CNhs11899_tpm_rev MacrophageMonocyteD2- bigWig Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_reverse 1 2494 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor2.CNhs11899.11313-117C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11313-117C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MacrophageMonocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MacrophageMonocyteDerivedDonor2_CNhs11899_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor2_CNhs11899_ctss_rev MacrophageMonocyteD2- bigWig Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_reverse 0 2494 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor2.CNhs11899.11313-117C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11313-117C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MacrophageMonocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MacrophageMonocyteDerivedDonor2_CNhs11899_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor3_CNhs12003_tpm_fwd MacrophageMonocyteD3+ bigWig Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_forward 1 2495 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor3.CNhs12003.11389-118C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11389-118C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MacrophageMonocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MacrophageMonocyteDerivedDonor3_CNhs12003_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor3_CNhs12003_ctss_fwd MacrophageMonocyteD3+ bigWig Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_forward 0 2495 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor3.CNhs12003.11389-118C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11389-118C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MacrophageMonocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MacrophageMonocyteDerivedDonor3_CNhs12003_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor3_CNhs12003_tpm_rev MacrophageMonocyteD3- bigWig Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_reverse 1 2496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor3.CNhs12003.11389-118C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11389-118C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MacrophageMonocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MacrophageMonocyteDerivedDonor3_CNhs12003_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor3_CNhs12003_ctss_rev MacrophageMonocyteD3- bigWig Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_reverse 0 2496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor3.CNhs12003.11389-118C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11389-118C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MacrophageMonocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MacrophageMonocyteDerivedDonor3_CNhs12003_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor2_CNhs13550_tpm_fwd MallassezCellsD2+ bigWig Mallassez-derived cells, donor2_CNhs13550_11929-125I3_forward 1 2497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor2.CNhs13550.11929-125I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mallassez-derived cells, donor2_CNhs13550_11929-125I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11929-125I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MallassezCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MallassezderivedCellsDonor2_CNhs13550_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor2_CNhs13550_ctss_fwd MallassezCellsD2+ bigWig Mallassez-derived cells, donor2_CNhs13550_11929-125I3_forward 0 2497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor2.CNhs13550.11929-125I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mallassez-derived cells, donor2_CNhs13550_11929-125I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11929-125I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MallassezCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MallassezderivedCellsDonor2_CNhs13550_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor2_CNhs13550_tpm_rev MallassezCellsD2- bigWig Mallassez-derived cells, donor2_CNhs13550_11929-125I3_reverse 1 2498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor2.CNhs13550.11929-125I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mallassez-derived cells, donor2_CNhs13550_11929-125I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11929-125I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MallassezCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MallassezderivedCellsDonor2_CNhs13550_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor2_CNhs13550_ctss_rev MallassezCellsD2- bigWig Mallassez-derived cells, donor2_CNhs13550_11929-125I3_reverse 0 2498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor2.CNhs13550.11929-125I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mallassez-derived cells, donor2_CNhs13550_11929-125I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11929-125I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MallassezCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MallassezderivedCellsDonor2_CNhs13550_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor3_CNhs13551_tpm_fwd MallassezCellsD3+ bigWig Mallassez-derived cells, donor3_CNhs13551_11930-125I4_forward 1 2499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor3.CNhs13551.11930-125I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mallassez-derived cells, donor3_CNhs13551_11930-125I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11930-125I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MallassezCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MallassezderivedCellsDonor3_CNhs13551_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor3_CNhs13551_ctss_fwd MallassezCellsD3+ bigWig Mallassez-derived cells, donor3_CNhs13551_11930-125I4_forward 0 2499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor3.CNhs13551.11930-125I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mallassez-derived cells, donor3_CNhs13551_11930-125I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11930-125I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MallassezCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MallassezderivedCellsDonor3_CNhs13551_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor3_CNhs13551_tpm_rev MallassezCellsD3- bigWig Mallassez-derived cells, donor3_CNhs13551_11930-125I4_reverse 1 2500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor3.CNhs13551.11930-125I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mallassez-derived cells, donor3_CNhs13551_11930-125I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11930-125I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MallassezCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MallassezderivedCellsDonor3_CNhs13551_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor3_CNhs13551_ctss_rev MallassezCellsD3- bigWig Mallassez-derived cells, donor3_CNhs13551_11930-125I4_reverse 0 2500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor3.CNhs13551.11930-125I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mallassez-derived cells, donor3_CNhs13551_11930-125I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11930-125I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MallassezCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MallassezderivedCellsDonor3_CNhs13551_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor1_CNhs11077_tpm_fwd MammaryEpithelialCellD1+ bigWig Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_forward 1 2501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor1.CNhs11077.11273-116H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11273-116H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MammaryEpithelialCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MammaryEpithelialCellDonor1_CNhs11077_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor1_CNhs11077_ctss_fwd MammaryEpithelialCellD1+ bigWig Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_forward 0 2501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor1.CNhs11077.11273-116H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11273-116H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MammaryEpithelialCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MammaryEpithelialCellDonor1_CNhs11077_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor1_CNhs11077_tpm_rev MammaryEpithelialCellD1- bigWig Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_reverse 1 2502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor1.CNhs11077.11273-116H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11273-116H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MammaryEpithelialCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MammaryEpithelialCellDonor1_CNhs11077_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor1_CNhs11077_ctss_rev MammaryEpithelialCellD1- bigWig Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_reverse 0 2502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor1.CNhs11077.11273-116H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11273-116H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MammaryEpithelialCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MammaryEpithelialCellDonor1_CNhs11077_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor2_CNhs11382_tpm_fwd MammaryEpithelialCellD2+ bigWig Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_forward 1 2503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor2.CNhs11382.11350-117G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11350-117G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MammaryEpithelialCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MammaryEpithelialCellDonor2_CNhs11382_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor2_CNhs11382_ctss_fwd MammaryEpithelialCellD2+ bigWig Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_forward 0 2503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor2.CNhs11382.11350-117G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11350-117G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MammaryEpithelialCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MammaryEpithelialCellDonor2_CNhs11382_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor2_CNhs11382_tpm_rev MammaryEpithelialCellD2- bigWig Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_reverse 1 2504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor2.CNhs11382.11350-117G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11350-117G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MammaryEpithelialCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MammaryEpithelialCellDonor2_CNhs11382_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor2_CNhs11382_ctss_rev MammaryEpithelialCellD2- bigWig Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_reverse 0 2504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor2.CNhs11382.11350-117G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11350-117G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MammaryEpithelialCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MammaryEpithelialCellDonor2_CNhs11382_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor3_CNhs12032_tpm_fwd MammaryEpithelialCellD3+ bigWig Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_forward 1 2505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor3.CNhs12032.11422-118F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11422-118F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MammaryEpithelialCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MammaryEpithelialCellDonor3_CNhs12032_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor3_CNhs12032_ctss_fwd MammaryEpithelialCellD3+ bigWig Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_forward 0 2505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor3.CNhs12032.11422-118F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11422-118F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MammaryEpithelialCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MammaryEpithelialCellDonor3_CNhs12032_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor3_CNhs12032_tpm_rev MammaryEpithelialCellD3- bigWig Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_reverse 1 2506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor3.CNhs12032.11422-118F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11422-118F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MammaryEpithelialCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MammaryEpithelialCellDonor3_CNhs12032_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor3_CNhs12032_ctss_rev MammaryEpithelialCellD3- bigWig Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_reverse 0 2506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor3.CNhs12032.11422-118F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11422-118F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MammaryEpithelialCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MammaryEpithelialCellDonor3_CNhs12032_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9\ urlLabel FANTOM5 Details:\ MastCellDonor1_CNhs12566_tpm_fwd MastCellD1+ bigWig Mast cell, donor1_CNhs12566_11563-120D6_forward 1 2507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor1.CNhs12566.11563-120D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor1_CNhs12566_11563-120D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11563-120D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor1_CNhs12566_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6\ urlLabel FANTOM5 Details:\ MastCellDonor1_CNhs12566_ctss_fwd MastCellD1+ bigWig Mast cell, donor1_CNhs12566_11563-120D6_forward 0 2507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor1.CNhs12566.11563-120D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor1_CNhs12566_11563-120D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11563-120D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor1_CNhs12566_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6\ urlLabel FANTOM5 Details:\ MastCellDonor1_CNhs12566_tpm_rev MastCellD1- bigWig Mast cell, donor1_CNhs12566_11563-120D6_reverse 1 2508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor1.CNhs12566.11563-120D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, donor1_CNhs12566_11563-120D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11563-120D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor1_CNhs12566_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6\ urlLabel FANTOM5 Details:\ MastCellDonor1_CNhs12566_ctss_rev MastCellD1- bigWig Mast cell, donor1_CNhs12566_11563-120D6_reverse 0 2508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor1.CNhs12566.11563-120D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, donor1_CNhs12566_11563-120D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11563-120D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor1_CNhs12566_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6\ urlLabel FANTOM5 Details:\ MastCellDonor2_CNhs12594_tpm_fwd MastCellD2+ bigWig Mast cell, donor2_CNhs12594_11565-120D8_forward 1 2509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor2.CNhs12594.11565-120D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor2_CNhs12594_11565-120D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11565-120D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor2_CNhs12594_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8\ urlLabel FANTOM5 Details:\ MastCellDonor2_CNhs12594_ctss_fwd MastCellD2+ bigWig Mast cell, donor2_CNhs12594_11565-120D8_forward 0 2509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor2.CNhs12594.11565-120D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor2_CNhs12594_11565-120D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11565-120D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor2_CNhs12594_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8\ urlLabel FANTOM5 Details:\ MastCellDonor2_CNhs12594_tpm_rev MastCellD2- bigWig Mast cell, donor2_CNhs12594_11565-120D8_reverse 1 2510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor2.CNhs12594.11565-120D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, donor2_CNhs12594_11565-120D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11565-120D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor2_CNhs12594_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8\ urlLabel FANTOM5 Details:\ MastCellDonor2_CNhs12594_ctss_rev MastCellD2- bigWig Mast cell, donor2_CNhs12594_11565-120D8_reverse 0 2510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor2.CNhs12594.11565-120D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, donor2_CNhs12594_11565-120D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11565-120D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor2_CNhs12594_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8\ urlLabel FANTOM5 Details:\ MastCellDonor3_CNhs12593_tpm_fwd MastCellD3+ bigWig Mast cell, donor3_CNhs12593_11566-120D9_forward 1 2511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor3.CNhs12593.11566-120D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor3_CNhs12593_11566-120D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11566-120D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor3_CNhs12593_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9\ urlLabel FANTOM5 Details:\ MastCellDonor3_CNhs12593_ctss_fwd MastCellD3+ bigWig Mast cell, donor3_CNhs12593_11566-120D9_forward 0 2511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor3.CNhs12593.11566-120D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor3_CNhs12593_11566-120D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11566-120D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor3_CNhs12593_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9\ urlLabel FANTOM5 Details:\ MastCellDonor3_CNhs12593_tpm_rev MastCellD3- bigWig Mast cell, donor3_CNhs12593_11566-120D9_reverse 1 2512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor3.CNhs12593.11566-120D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, donor3_CNhs12593_11566-120D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11566-120D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor3_CNhs12593_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9\ urlLabel FANTOM5 Details:\ MastCellDonor3_CNhs12593_ctss_rev MastCellD3- bigWig Mast cell, donor3_CNhs12593_11566-120D9_reverse 0 2512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor3.CNhs12593.11566-120D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, donor3_CNhs12593_11566-120D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11566-120D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor3_CNhs12593_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9\ urlLabel FANTOM5 Details:\ MastCellDonor4_CNhs12592_tpm_fwd MastCellD4+ bigWig Mast cell, donor4_CNhs12592_11567-120E1_forward 1 2513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor4.CNhs12592.11567-120E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor4_CNhs12592_11567-120E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11567-120E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor4_CNhs12592_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1\ urlLabel FANTOM5 Details:\ MastCellDonor4_CNhs12592_ctss_fwd MastCellD4+ bigWig Mast cell, donor4_CNhs12592_11567-120E1_forward 0 2513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor4.CNhs12592.11567-120E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor4_CNhs12592_11567-120E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11567-120E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor4_CNhs12592_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1\ urlLabel FANTOM5 Details:\ MastCellDonor4_CNhs12592_tpm_rev MastCellD4- bigWig Mast cell, donor4_CNhs12592_11567-120E1_reverse 1 2514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor4.CNhs12592.11567-120E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, donor4_CNhs12592_11567-120E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11567-120E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor4_CNhs12592_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1\ urlLabel FANTOM5 Details:\ MastCellDonor4_CNhs12592_ctss_rev MastCellD4- bigWig Mast cell, donor4_CNhs12592_11567-120E1_reverse 0 2514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor4.CNhs12592.11567-120E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, donor4_CNhs12592_11567-120E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11567-120E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor4_CNhs12592_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1\ urlLabel FANTOM5 Details:\ MastCellExpandedAndStimulatedDonor5_CNhs13925_tpm_fwd MastCellExpD5+ bigWig Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_forward 1 2515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor5.CNhs13925.11940-126A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11940-126A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedAndStimulatedDonor5_CNhs13925_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5\ urlLabel FANTOM5 Details:\ MastCellExpandedDonor5_CNhs13924_ctss_fwd MastCellExpD5+ bigWig Mast cell, expanded, donor5_CNhs13924_11939-126A4_forward 0 2515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%2c%20donor5.CNhs13924.11939-126A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded, donor5_CNhs13924_11939-126A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11939-126A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedDonor5_CNhs13924_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4\ urlLabel FANTOM5 Details:\ MastCellExpandedDonor5_CNhs13924_tpm_fwd MastCellExpD5+ bigWig Mast cell, expanded, donor5_CNhs13924_11939-126A4_forward 1 2516 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%2c%20donor5.CNhs13924.11939-126A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded, donor5_CNhs13924_11939-126A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11939-126A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedDonor5_CNhs13924_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4\ urlLabel FANTOM5 Details:\ MastCellExpandedAndStimulatedDonor5_CNhs13925_ctss_fwd MastCellExpD5+ bigWig Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_forward 0 2516 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor5.CNhs13925.11940-126A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11940-126A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedAndStimulatedDonor5_CNhs13925_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5\ urlLabel FANTOM5 Details:\ MastCellExpandedAndStimulatedDonor5_CNhs13925_tpm_rev MastCellExpD5- bigWig Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_reverse 1 2517 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor5.CNhs13925.11940-126A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11940-126A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedAndStimulatedDonor5_CNhs13925_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5\ urlLabel FANTOM5 Details:\ MastCellExpandedDonor5_CNhs13924_ctss_rev MastCellExpD5- bigWig Mast cell, expanded, donor5_CNhs13924_11939-126A4_reverse 0 2517 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%2c%20donor5.CNhs13924.11939-126A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded, donor5_CNhs13924_11939-126A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11939-126A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedDonor5_CNhs13924_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4\ urlLabel FANTOM5 Details:\ MastCellExpandedDonor5_CNhs13924_tpm_rev MastCellExpD5- bigWig Mast cell, expanded, donor5_CNhs13924_11939-126A4_reverse 1 2518 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%2c%20donor5.CNhs13924.11939-126A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded, donor5_CNhs13924_11939-126A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11939-126A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedDonor5_CNhs13924_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4\ urlLabel FANTOM5 Details:\ MastCellExpandedAndStimulatedDonor5_CNhs13925_ctss_rev MastCellExpD5- bigWig Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_reverse 0 2518 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor5.CNhs13925.11940-126A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11940-126A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedAndStimulatedDonor5_CNhs13925_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5\ urlLabel FANTOM5 Details:\ MastCellExpandedAndStimulatedDonor8_CNhs13927_tpm_fwd MastCellExpD8+ bigWig Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_forward 1 2519 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor8.CNhs13927.11942-126A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11942-126A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD8+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedAndStimulatedDonor8_CNhs13927_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7\ urlLabel FANTOM5 Details:\ MastCellExpandedDonor8_CNhs13926_ctss_fwd MastCellExpD8+ bigWig Mast cell, expanded, donor8_CNhs13926_11941-126A6_forward 0 2519 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%2c%20donor8.CNhs13926.11941-126A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded, donor8_CNhs13926_11941-126A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11941-126A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD8+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedDonor8_CNhs13926_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6\ urlLabel FANTOM5 Details:\ MastCellExpandedDonor8_CNhs13926_tpm_fwd MastCellExpD8+ bigWig Mast cell, expanded, donor8_CNhs13926_11941-126A6_forward 1 2520 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%2c%20donor8.CNhs13926.11941-126A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded, donor8_CNhs13926_11941-126A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11941-126A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD8+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedDonor8_CNhs13926_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6\ urlLabel FANTOM5 Details:\ MastCellExpandedAndStimulatedDonor8_CNhs13927_ctss_fwd MastCellExpD8+ bigWig Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_forward 0 2520 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor8.CNhs13927.11942-126A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11942-126A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD8+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedAndStimulatedDonor8_CNhs13927_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7\ urlLabel FANTOM5 Details:\ MastCellExpandedAndStimulatedDonor8_CNhs13927_tpm_rev MastCellExpD8- bigWig Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_reverse 1 2521 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor8.CNhs13927.11942-126A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11942-126A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedAndStimulatedDonor8_CNhs13927_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7\ urlLabel FANTOM5 Details:\ MastCellExpandedDonor8_CNhs13926_ctss_rev MastCellExpD8- bigWig Mast cell, expanded, donor8_CNhs13926_11941-126A6_reverse 0 2521 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%2c%20donor8.CNhs13926.11941-126A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded, donor8_CNhs13926_11941-126A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11941-126A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedDonor8_CNhs13926_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6\ urlLabel FANTOM5 Details:\ MastCellExpandedDonor8_CNhs13926_tpm_rev MastCellExpD8- bigWig Mast cell, expanded, donor8_CNhs13926_11941-126A6_reverse 1 2522 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%2c%20donor8.CNhs13926.11941-126A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded, donor8_CNhs13926_11941-126A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11941-126A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedDonor8_CNhs13926_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6\ urlLabel FANTOM5 Details:\ MastCellExpandedAndStimulatedDonor8_CNhs13927_ctss_rev MastCellExpD8- bigWig Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_reverse 0 2522 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor8.CNhs13927.11942-126A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11942-126A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedAndStimulatedDonor8_CNhs13927_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7\ urlLabel FANTOM5 Details:\ MastCellStimulatedDonor1_CNhs11073_tpm_fwd MastCellStimulatedD1+ bigWig Mast cell - stimulated, donor1_CNhs11073_11487-119E2_forward 1 2523 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%20-%20stimulated%2c%20donor1.CNhs11073.11487-119E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell - stimulated, donor1_CNhs11073_11487-119E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11487-119E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellStimulatedD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellStimulatedDonor1_CNhs11073_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2\ urlLabel FANTOM5 Details:\ MastCellStimulatedDonor1_CNhs11073_ctss_fwd MastCellStimulatedD1+ bigWig Mast cell - stimulated, donor1_CNhs11073_11487-119E2_forward 0 2523 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%20-%20stimulated%2c%20donor1.CNhs11073.11487-119E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell - stimulated, donor1_CNhs11073_11487-119E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11487-119E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellStimulatedD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellStimulatedDonor1_CNhs11073_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2\ urlLabel FANTOM5 Details:\ MastCellStimulatedDonor1_CNhs11073_tpm_rev MastCellStimulatedD1- bigWig Mast cell - stimulated, donor1_CNhs11073_11487-119E2_reverse 1 2524 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%20-%20stimulated%2c%20donor1.CNhs11073.11487-119E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell - stimulated, donor1_CNhs11073_11487-119E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11487-119E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellStimulatedD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellStimulatedDonor1_CNhs11073_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2\ urlLabel FANTOM5 Details:\ MastCellStimulatedDonor1_CNhs11073_ctss_rev MastCellStimulatedD1- bigWig Mast cell - stimulated, donor1_CNhs11073_11487-119E2_reverse 0 2524 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%20-%20stimulated%2c%20donor1.CNhs11073.11487-119E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell - stimulated, donor1_CNhs11073_11487-119E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11487-119E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellStimulatedD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellStimulatedDonor1_CNhs11073_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor1_CNhs12591_tpm_fwd MelanocyteDarkD1+ bigWig Melanocyte - dark, donor1_CNhs12591_11502-119F8_forward 1 2525 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor1.CNhs12591.11502-119F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte - dark, donor1_CNhs12591_11502-119F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11502-119F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteDarkD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteDarkDonor1_CNhs12591_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor1_CNhs12591_ctss_fwd MelanocyteDarkD1+ bigWig Melanocyte - dark, donor1_CNhs12591_11502-119F8_forward 0 2525 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor1.CNhs12591.11502-119F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte - dark, donor1_CNhs12591_11502-119F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11502-119F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteDarkD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteDarkDonor1_CNhs12591_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor1_CNhs12591_tpm_rev MelanocyteDarkD1- bigWig Melanocyte - dark, donor1_CNhs12591_11502-119F8_reverse 1 2526 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor1.CNhs12591.11502-119F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte - dark, donor1_CNhs12591_11502-119F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11502-119F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteDarkD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteDarkDonor1_CNhs12591_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor1_CNhs12591_ctss_rev MelanocyteDarkD1- bigWig Melanocyte - dark, donor1_CNhs12591_11502-119F8_reverse 0 2526 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor1.CNhs12591.11502-119F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte - dark, donor1_CNhs12591_11502-119F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11502-119F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteDarkD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteDarkDonor1_CNhs12591_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor2_CNhs12346_tpm_fwd MelanocyteDarkD2+ bigWig Melanocyte - dark, donor2_CNhs12346_11582-120F7_forward 1 2527 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor2.CNhs12346.11582-120F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte - dark, donor2_CNhs12346_11582-120F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11582-120F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteDarkD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteDarkDonor2_CNhs12346_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor2_CNhs12346_ctss_fwd MelanocyteDarkD2+ bigWig Melanocyte - dark, donor2_CNhs12346_11582-120F7_forward 0 2527 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor2.CNhs12346.11582-120F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte - dark, donor2_CNhs12346_11582-120F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11582-120F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteDarkD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteDarkDonor2_CNhs12346_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor2_CNhs12346_tpm_rev MelanocyteDarkD2- bigWig Melanocyte - dark, donor2_CNhs12346_11582-120F7_reverse 1 2528 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor2.CNhs12346.11582-120F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte - dark, donor2_CNhs12346_11582-120F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11582-120F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteDarkD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteDarkDonor2_CNhs12346_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor2_CNhs12346_ctss_rev MelanocyteDarkD2- bigWig Melanocyte - dark, donor2_CNhs12346_11582-120F7_reverse 0 2528 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor2.CNhs12346.11582-120F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte - dark, donor2_CNhs12346_11582-120F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11582-120F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteDarkD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteDarkDonor2_CNhs12346_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor3_CNhs12570_tpm_fwd MelanocyteDarkD3+ bigWig Melanocyte - dark, donor3_CNhs12570_11663-122F7_forward 1 2529 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor3.CNhs12570.11663-122F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte - dark, donor3_CNhs12570_11663-122F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11663-122F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteDarkD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteDarkDonor3_CNhs12570_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor3_CNhs12570_ctss_fwd MelanocyteDarkD3+ bigWig Melanocyte - dark, donor3_CNhs12570_11663-122F7_forward 0 2529 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor3.CNhs12570.11663-122F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte - dark, donor3_CNhs12570_11663-122F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11663-122F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteDarkD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteDarkDonor3_CNhs12570_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor3_CNhs12570_tpm_rev MelanocyteDarkD3- bigWig Melanocyte - dark, donor3_CNhs12570_11663-122F7_reverse 1 2530 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor3.CNhs12570.11663-122F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte - dark, donor3_CNhs12570_11663-122F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11663-122F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteDarkD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteDarkDonor3_CNhs12570_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor3_CNhs12570_ctss_rev MelanocyteDarkD3- bigWig Melanocyte - dark, donor3_CNhs12570_11663-122F7_reverse 0 2530 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor3.CNhs12570.11663-122F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte - dark, donor3_CNhs12570_11663-122F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11663-122F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteDarkD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteDarkDonor3_CNhs12570_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor1_CNhs11303_tpm_fwd MelanocyteLightD1+ bigWig Melanocyte - light, donor1_CNhs11303_11274-116H5_forward 1 2531 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor1.CNhs11303.11274-116H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte - light, donor1_CNhs11303_11274-116H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11274-116H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteLightD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteLightDonor1_CNhs11303_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor1_CNhs11303_ctss_fwd MelanocyteLightD1+ bigWig Melanocyte - light, donor1_CNhs11303_11274-116H5_forward 0 2531 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor1.CNhs11303.11274-116H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte - light, donor1_CNhs11303_11274-116H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11274-116H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteLightD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteLightDonor1_CNhs11303_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor1_CNhs11303_tpm_rev MelanocyteLightD1- bigWig Melanocyte - light, donor1_CNhs11303_11274-116H5_reverse 1 2532 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor1.CNhs11303.11274-116H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte - light, donor1_CNhs11303_11274-116H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11274-116H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteLightD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteLightDonor1_CNhs11303_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor1_CNhs11303_ctss_rev MelanocyteLightD1- bigWig Melanocyte - light, donor1_CNhs11303_11274-116H5_reverse 0 2532 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor1.CNhs11303.11274-116H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte - light, donor1_CNhs11303_11274-116H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11274-116H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteLightD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteLightDonor1_CNhs11303_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor2_CNhs11383_tpm_fwd MelanocyteLightD2+ bigWig Melanocyte - light, donor2_CNhs11383_11351-117H1_forward 1 2533 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor2.CNhs11383.11351-117H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte - light, donor2_CNhs11383_11351-117H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11351-117H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteLightD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteLightDonor2_CNhs11383_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor2_CNhs11383_ctss_fwd MelanocyteLightD2+ bigWig Melanocyte - light, donor2_CNhs11383_11351-117H1_forward 0 2533 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor2.CNhs11383.11351-117H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte - light, donor2_CNhs11383_11351-117H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11351-117H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteLightD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteLightDonor2_CNhs11383_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor2_CNhs11383_tpm_rev MelanocyteLightD2- bigWig Melanocyte - light, donor2_CNhs11383_11351-117H1_reverse 1 2534 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor2.CNhs11383.11351-117H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte - light, donor2_CNhs11383_11351-117H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11351-117H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteLightD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteLightDonor2_CNhs11383_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor2_CNhs11383_ctss_rev MelanocyteLightD2- bigWig Melanocyte - light, donor2_CNhs11383_11351-117H1_reverse 0 2534 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor2.CNhs11383.11351-117H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte - light, donor2_CNhs11383_11351-117H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11351-117H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteLightD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteLightDonor2_CNhs11383_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor3_CNhs12033_tpm_fwd MelanocyteLightD3+ bigWig Melanocyte - light, donor3_CNhs12033_11423-118G1_forward 1 2535 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor3.CNhs12033.11423-118G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte - light, donor3_CNhs12033_11423-118G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11423-118G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteLightD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteLightDonor3_CNhs12033_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor3_CNhs12033_ctss_fwd MelanocyteLightD3+ bigWig Melanocyte - light, donor3_CNhs12033_11423-118G1_forward 0 2535 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor3.CNhs12033.11423-118G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte - light, donor3_CNhs12033_11423-118G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11423-118G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteLightD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteLightDonor3_CNhs12033_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor3_CNhs12033_tpm_rev MelanocyteLightD3- bigWig Melanocyte - light, donor3_CNhs12033_11423-118G1_reverse 1 2536 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor3.CNhs12033.11423-118G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte - light, donor3_CNhs12033_11423-118G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11423-118G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteLightD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteLightDonor3_CNhs12033_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor3_CNhs12033_ctss_rev MelanocyteLightD3- bigWig Melanocyte - light, donor3_CNhs12033_11423-118G1_reverse 0 2536 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor3.CNhs12033.11423-118G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte - light, donor3_CNhs12033_11423-118G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11423-118G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteLightD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteLightDonor3_CNhs12033_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1\ urlLabel FANTOM5 Details:\ MeningealCellsDonor1_CNhs11320_tpm_fwd MeningealCellsD1+ bigWig Meningeal Cells, donor1_CNhs11320_11493-119E8_forward 1 2537 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor1.CNhs11320.11493-119E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Meningeal Cells, donor1_CNhs11320_11493-119E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11493-119E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MeningealCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MeningealCellsDonor1_CNhs11320_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8\ urlLabel FANTOM5 Details:\ MeningealCellsDonor1_CNhs11320_ctss_fwd MeningealCellsD1+ bigWig Meningeal Cells, donor1_CNhs11320_11493-119E8_forward 0 2537 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor1.CNhs11320.11493-119E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Meningeal Cells, donor1_CNhs11320_11493-119E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11493-119E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MeningealCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MeningealCellsDonor1_CNhs11320_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8\ urlLabel FANTOM5 Details:\ MeningealCellsDonor1_CNhs11320_tpm_rev MeningealCellsD1- bigWig Meningeal Cells, donor1_CNhs11320_11493-119E8_reverse 1 2538 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor1.CNhs11320.11493-119E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Meningeal Cells, donor1_CNhs11320_11493-119E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11493-119E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MeningealCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MeningealCellsDonor1_CNhs11320_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8\ urlLabel FANTOM5 Details:\ MeningealCellsDonor1_CNhs11320_ctss_rev MeningealCellsD1- bigWig Meningeal Cells, donor1_CNhs11320_11493-119E8_reverse 0 2538 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor1.CNhs11320.11493-119E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Meningeal Cells, donor1_CNhs11320_11493-119E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11493-119E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MeningealCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MeningealCellsDonor1_CNhs11320_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8\ urlLabel FANTOM5 Details:\ MeningealCellsDonor2_CNhs12080_tpm_fwd MeningealCellsD2+ bigWig Meningeal Cells, donor2_CNhs12080_11573-120E7_forward 1 2539 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor2.CNhs12080.11573-120E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Meningeal Cells, donor2_CNhs12080_11573-120E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11573-120E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MeningealCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MeningealCellsDonor2_CNhs12080_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7\ urlLabel FANTOM5 Details:\ MeningealCellsDonor2_CNhs12080_ctss_fwd MeningealCellsD2+ bigWig Meningeal Cells, donor2_CNhs12080_11573-120E7_forward 0 2539 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor2.CNhs12080.11573-120E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Meningeal Cells, donor2_CNhs12080_11573-120E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11573-120E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MeningealCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MeningealCellsDonor2_CNhs12080_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7\ urlLabel FANTOM5 Details:\ MeningealCellsDonor2_CNhs12080_tpm_rev MeningealCellsD2- bigWig Meningeal Cells, donor2_CNhs12080_11573-120E7_reverse 1 2540 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor2.CNhs12080.11573-120E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Meningeal Cells, donor2_CNhs12080_11573-120E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11573-120E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MeningealCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MeningealCellsDonor2_CNhs12080_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7\ urlLabel FANTOM5 Details:\ MeningealCellsDonor2_CNhs12080_ctss_rev MeningealCellsD2- bigWig Meningeal Cells, donor2_CNhs12080_11573-120E7_reverse 0 2540 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor2.CNhs12080.11573-120E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Meningeal Cells, donor2_CNhs12080_11573-120E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11573-120E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MeningealCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MeningealCellsDonor2_CNhs12080_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7\ urlLabel FANTOM5 Details:\ MeningealCellsDonor3_CNhs12731_tpm_fwd MeningealCellsD3+ bigWig Meningeal Cells, donor3_CNhs12731_11654-122E7_forward 1 2541 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor3.CNhs12731.11654-122E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Meningeal Cells, donor3_CNhs12731_11654-122E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11654-122E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MeningealCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MeningealCellsDonor3_CNhs12731_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7\ urlLabel FANTOM5 Details:\ MeningealCellsDonor3_CNhs12731_ctss_fwd MeningealCellsD3+ bigWig Meningeal Cells, donor3_CNhs12731_11654-122E7_forward 0 2541 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor3.CNhs12731.11654-122E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Meningeal Cells, donor3_CNhs12731_11654-122E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11654-122E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MeningealCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MeningealCellsDonor3_CNhs12731_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7\ urlLabel FANTOM5 Details:\ MeningealCellsDonor3_CNhs12731_tpm_rev MeningealCellsD3- bigWig Meningeal Cells, donor3_CNhs12731_11654-122E7_reverse 1 2542 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor3.CNhs12731.11654-122E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Meningeal Cells, donor3_CNhs12731_11654-122E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11654-122E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MeningealCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MeningealCellsDonor3_CNhs12731_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7\ urlLabel FANTOM5 Details:\ MeningealCellsDonor3_CNhs12731_ctss_rev MeningealCellsD3- bigWig Meningeal Cells, donor3_CNhs12731_11654-122E7_reverse 0 2542 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor3.CNhs12731.11654-122E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Meningeal Cells, donor3_CNhs12731_11654-122E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11654-122E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MeningealCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MeningealCellsDonor3_CNhs12731_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor1_CNhs10850_tpm_fwd MesothelialCellsD1+ bigWig Mesothelial Cells, donor1_CNhs10850_11247-116E5_forward 1 2543 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor1.CNhs10850.11247-116E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesothelial Cells, donor1_CNhs10850_11247-116E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11247-116E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MesothelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesothelialCellsDonor1_CNhs10850_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor1_CNhs10850_ctss_fwd MesothelialCellsD1+ bigWig Mesothelial Cells, donor1_CNhs10850_11247-116E5_forward 0 2543 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor1.CNhs10850.11247-116E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesothelial Cells, donor1_CNhs10850_11247-116E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11247-116E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MesothelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesothelialCellsDonor1_CNhs10850_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor1_CNhs10850_tpm_rev MesothelialCellsD1- bigWig Mesothelial Cells, donor1_CNhs10850_11247-116E5_reverse 1 2544 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor1.CNhs10850.11247-116E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesothelial Cells, donor1_CNhs10850_11247-116E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11247-116E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MesothelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesothelialCellsDonor1_CNhs10850_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor1_CNhs10850_ctss_rev MesothelialCellsD1- bigWig Mesothelial Cells, donor1_CNhs10850_11247-116E5_reverse 0 2544 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor1.CNhs10850.11247-116E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesothelial Cells, donor1_CNhs10850_11247-116E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11247-116E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MesothelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesothelialCellsDonor1_CNhs10850_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor3_CNhs12012_tpm_fwd MesothelialCellsD3+ bigWig Mesothelial Cells, donor3_CNhs12012_11402-118D7_forward 1 2545 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor3.CNhs12012.11402-118D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesothelial Cells, donor3_CNhs12012_11402-118D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11402-118D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MesothelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesothelialCellsDonor3_CNhs12012_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor3_CNhs12012_ctss_fwd MesothelialCellsD3+ bigWig Mesothelial Cells, donor3_CNhs12012_11402-118D7_forward 0 2545 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor3.CNhs12012.11402-118D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesothelial Cells, donor3_CNhs12012_11402-118D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11402-118D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MesothelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesothelialCellsDonor3_CNhs12012_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor3_CNhs12012_tpm_rev MesothelialCellsD3- bigWig Mesothelial Cells, donor3_CNhs12012_11402-118D7_reverse 1 2546 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor3.CNhs12012.11402-118D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesothelial Cells, donor3_CNhs12012_11402-118D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11402-118D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MesothelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesothelialCellsDonor3_CNhs12012_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor3_CNhs12012_ctss_rev MesothelialCellsD3- bigWig Mesothelial Cells, donor3_CNhs12012_11402-118D7_reverse 0 2546 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor3.CNhs12012.11402-118D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesothelial Cells, donor3_CNhs12012_11402-118D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11402-118D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MesothelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesothelialCellsDonor3_CNhs12012_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor1_CNhs13535_tpm_fwd MigratoryLangerhansCellsD1+ bigWig migratory langerhans cells, donor1_CNhs13535_11901-125F2_forward 1 2547 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor1.CNhs13535.11901-125F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel migratory langerhans cells, donor1_CNhs13535_11901-125F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11901-125F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MigratoryLangerhansCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MigratoryLangerhansCellsDonor1_CNhs13535_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor1_CNhs13535_ctss_fwd MigratoryLangerhansCellsD1+ bigWig migratory langerhans cells, donor1_CNhs13535_11901-125F2_forward 0 2547 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor1.CNhs13535.11901-125F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel migratory langerhans cells, donor1_CNhs13535_11901-125F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11901-125F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MigratoryLangerhansCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MigratoryLangerhansCellsDonor1_CNhs13535_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor1_CNhs13535_tpm_rev MigratoryLangerhansCellsD1- bigWig migratory langerhans cells, donor1_CNhs13535_11901-125F2_reverse 1 2548 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor1.CNhs13535.11901-125F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel migratory langerhans cells, donor1_CNhs13535_11901-125F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11901-125F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MigratoryLangerhansCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MigratoryLangerhansCellsDonor1_CNhs13535_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor1_CNhs13535_ctss_rev MigratoryLangerhansCellsD1- bigWig migratory langerhans cells, donor1_CNhs13535_11901-125F2_reverse 0 2548 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor1.CNhs13535.11901-125F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel migratory langerhans cells, donor1_CNhs13535_11901-125F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11901-125F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MigratoryLangerhansCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MigratoryLangerhansCellsDonor1_CNhs13535_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor2_CNhs13536_tpm_fwd MigratoryLangerhansCellsD2+ bigWig migratory langerhans cells, donor2_CNhs13536_11902-125F3_forward 1 2549 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor2.CNhs13536.11902-125F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel migratory langerhans cells, donor2_CNhs13536_11902-125F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11902-125F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MigratoryLangerhansCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MigratoryLangerhansCellsDonor2_CNhs13536_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor2_CNhs13536_ctss_fwd MigratoryLangerhansCellsD2+ bigWig migratory langerhans cells, donor2_CNhs13536_11902-125F3_forward 0 2549 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor2.CNhs13536.11902-125F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel migratory langerhans cells, donor2_CNhs13536_11902-125F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11902-125F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MigratoryLangerhansCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MigratoryLangerhansCellsDonor2_CNhs13536_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor2_CNhs13536_tpm_rev MigratoryLangerhansCellsD2- bigWig migratory langerhans cells, donor2_CNhs13536_11902-125F3_reverse 1 2550 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor2.CNhs13536.11902-125F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel migratory langerhans cells, donor2_CNhs13536_11902-125F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11902-125F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MigratoryLangerhansCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MigratoryLangerhansCellsDonor2_CNhs13536_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor2_CNhs13536_ctss_rev MigratoryLangerhansCellsD2- bigWig migratory langerhans cells, donor2_CNhs13536_11902-125F3_reverse 0 2550 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor2.CNhs13536.11902-125F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel migratory langerhans cells, donor2_CNhs13536_11902-125F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11902-125F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MigratoryLangerhansCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MigratoryLangerhansCellsDonor2_CNhs13536_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor3_CNhs13547_tpm_fwd MigratoryLangerhansCellsD3+ bigWig migratory langerhans cells, donor3_CNhs13547_11903-125F4_forward 1 2551 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor3.CNhs13547.11903-125F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel migratory langerhans cells, donor3_CNhs13547_11903-125F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11903-125F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MigratoryLangerhansCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MigratoryLangerhansCellsDonor3_CNhs13547_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor3_CNhs13547_ctss_fwd MigratoryLangerhansCellsD3+ bigWig migratory langerhans cells, donor3_CNhs13547_11903-125F4_forward 0 2551 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor3.CNhs13547.11903-125F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel migratory langerhans cells, donor3_CNhs13547_11903-125F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11903-125F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MigratoryLangerhansCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MigratoryLangerhansCellsDonor3_CNhs13547_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor3_CNhs13547_tpm_rev MigratoryLangerhansCellsD3- bigWig migratory langerhans cells, donor3_CNhs13547_11903-125F4_reverse 1 2552 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor3.CNhs13547.11903-125F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel migratory langerhans cells, donor3_CNhs13547_11903-125F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11903-125F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MigratoryLangerhansCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MigratoryLangerhansCellsDonor3_CNhs13547_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor3_CNhs13547_ctss_rev MigratoryLangerhansCellsD3- bigWig migratory langerhans cells, donor3_CNhs13547_11903-125F4_reverse 0 2552 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor3.CNhs13547.11903-125F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel migratory langerhans cells, donor3_CNhs13547_11903-125F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11903-125F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MigratoryLangerhansCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MigratoryLangerhansCellsDonor3_CNhs13547_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_tpm_fwd MpcAdiposeD1+ bigWig mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_forward 1 2553 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor1.CNhs12363.11747-123G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11747-123G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcAdiposeD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_ctss_fwd MpcAdiposeD1+ bigWig mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_forward 0 2553 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor1.CNhs12363.11747-123G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11747-123G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcAdiposeD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_tpm_rev MpcAdiposeD1- bigWig mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_reverse 1 2554 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor1.CNhs12363.11747-123G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11747-123G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcAdiposeD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_ctss_rev MpcAdiposeD1- bigWig mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_reverse 0 2554 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor1.CNhs12363.11747-123G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11747-123G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcAdiposeD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_tpm_fwd MpcAdiposeD2+ bigWig mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_forward 1 2555 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor2.CNhs12364.11748-123G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11748-123G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcAdiposeD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_ctss_fwd MpcAdiposeD2+ bigWig mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_forward 0 2555 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor2.CNhs12364.11748-123G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11748-123G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcAdiposeD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_tpm_rev MpcAdiposeD2- bigWig mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_reverse 1 2556 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor2.CNhs12364.11748-123G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11748-123G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcAdiposeD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_ctss_rev MpcAdiposeD2- bigWig mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_reverse 0 2556 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor2.CNhs12364.11748-123G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11748-123G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcAdiposeD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_tpm_fwd MpcAdiposeD3+ bigWig mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_forward 1 2557 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor3.CNhs12365.11749-123G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11749-123G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcAdiposeD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_ctss_fwd MpcAdiposeD3+ bigWig mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_forward 0 2557 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor3.CNhs12365.11749-123G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11749-123G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcAdiposeD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_tpm_rev MpcAdiposeD3- bigWig mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_reverse 1 2558 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor3.CNhs12365.11749-123G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11749-123G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcAdiposeD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_ctss_rev MpcAdiposeD3- bigWig mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_reverse 0 2558 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor3.CNhs12365.11749-123G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11749-123G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcAdiposeD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_tpm_fwd MpcBoneMarrowD1+ bigWig mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_forward 1 2559 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor1.CNhs12366.11750-123G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11750-123G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcBoneMarrowD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_ctss_fwd MpcBoneMarrowD1+ bigWig mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_forward 0 2559 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor1.CNhs12366.11750-123G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11750-123G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcBoneMarrowD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_tpm_rev MpcBoneMarrowD1- bigWig mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_reverse 1 2560 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor1.CNhs12366.11750-123G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11750-123G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcBoneMarrowD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_ctss_rev MpcBoneMarrowD1- bigWig mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_reverse 0 2560 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor1.CNhs12366.11750-123G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11750-123G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcBoneMarrowD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_tpm_fwd MpcBoneMarrowD2+ bigWig mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_forward 1 2561 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor2.CNhs12367.11751-123G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11751-123G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcBoneMarrowD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_ctss_fwd MpcBoneMarrowD2+ bigWig mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_forward 0 2561 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor2.CNhs12367.11751-123G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11751-123G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcBoneMarrowD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_tpm_rev MpcBoneMarrowD2- bigWig mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_reverse 1 2562 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor2.CNhs12367.11751-123G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11751-123G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcBoneMarrowD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_ctss_rev MpcBoneMarrowD2- bigWig mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_reverse 0 2562 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor2.CNhs12367.11751-123G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11751-123G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcBoneMarrowD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_tpm_fwd MpcBoneMarrowD3+ bigWig mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_forward 1 2563 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor3.CNhs13098.11840-124H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11840-124H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcBoneMarrowD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_ctss_fwd MpcBoneMarrowD3+ bigWig mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_forward 0 2563 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor3.CNhs13098.11840-124H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11840-124H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcBoneMarrowD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_tpm_rev MpcBoneMarrowD3- bigWig mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_reverse 1 2564 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor3.CNhs13098.11840-124H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11840-124H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcBoneMarrowD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_ctss_rev MpcBoneMarrowD3- bigWig mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_reverse 0 2564 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor3.CNhs13098.11840-124H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11840-124H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcBoneMarrowD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor1_CNhs12368_tpm_fwd MpcCardiacD1+ bigWig mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_forward 1 2565 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor1.CNhs12368.11752-123G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11752-123G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor1_CNhs12368_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor1_CNhs12368_ctss_fwd MpcCardiacD1+ bigWig mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_forward 0 2565 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor1.CNhs12368.11752-123G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11752-123G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor1_CNhs12368_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor1_CNhs12368_tpm_rev MpcCardiacD1- bigWig mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_reverse 1 2566 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor1.CNhs12368.11752-123G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11752-123G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor1_CNhs12368_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor1_CNhs12368_ctss_rev MpcCardiacD1- bigWig mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_reverse 0 2566 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor1.CNhs12368.11752-123G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11752-123G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor1_CNhs12368_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor2_CNhs12369_tpm_fwd MpcCardiacD2+ bigWig mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_forward 1 2567 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor2.CNhs12369.11753-123G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11753-123G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor2_CNhs12369_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor2_CNhs12369_ctss_fwd MpcCardiacD2+ bigWig mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_forward 0 2567 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor2.CNhs12369.11753-123G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11753-123G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor2_CNhs12369_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor2_CNhs12369_tpm_rev MpcCardiacD2- bigWig mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_reverse 1 2568 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor2.CNhs12369.11753-123G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11753-123G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor2_CNhs12369_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor2_CNhs12369_ctss_rev MpcCardiacD2- bigWig mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_reverse 0 2568 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor2.CNhs12369.11753-123G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11753-123G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor2_CNhs12369_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor3_CNhs12370_tpm_fwd MpcCardiacD3+ bigWig mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_forward 1 2569 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor3.CNhs12370.11754-123G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11754-123G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor3_CNhs12370_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor3_CNhs12370_ctss_fwd MpcCardiacD3+ bigWig mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_forward 0 2569 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor3.CNhs12370.11754-123G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11754-123G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor3_CNhs12370_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor3_CNhs12370_tpm_rev MpcCardiacD3- bigWig mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_reverse 1 2570 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor3.CNhs12370.11754-123G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11754-123G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor3_CNhs12370_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor3_CNhs12370_ctss_rev MpcCardiacD3- bigWig mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_reverse 0 2570 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor3.CNhs12370.11754-123G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11754-123G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor3_CNhs12370_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor4_CNhs12371_tpm_fwd MpcCardiacD4+ bigWig mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_forward 1 2571 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor4.CNhs12371.11755-123G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11755-123G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor4_CNhs12371_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor4_CNhs12371_ctss_fwd MpcCardiacD4+ bigWig mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_forward 0 2571 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor4.CNhs12371.11755-123G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11755-123G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor4_CNhs12371_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor4_CNhs12371_tpm_rev MpcCardiacD4- bigWig mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_reverse 1 2572 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor4.CNhs12371.11755-123G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11755-123G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor4_CNhs12371_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor4_CNhs12371_ctss_rev MpcCardiacD4- bigWig mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_reverse 0 2572 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor4.CNhs12371.11755-123G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11755-123G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor4_CNhs12371_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_tpm_fwd MpcOvarianCancerLeftOvaryD1+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_forward 1 2573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor1.CNhs12372.11756-123H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11756-123H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_ctss_fwd MpcOvarianCancerLeftOvaryD1+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_forward 0 2573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor1.CNhs12372.11756-123H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11756-123H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_tpm_rev MpcOvarianCancerLeftOvaryD1- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_reverse 1 2574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor1.CNhs12372.11756-123H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11756-123H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_ctss_rev MpcOvarianCancerLeftOvaryD1- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_reverse 0 2574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor1.CNhs12372.11756-123H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11756-123H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_tpm_fwd MpcOvarianCancerLeftOvaryD2+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_forward 1 2575 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor2.CNhs13092.11833-124G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11833-124G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_ctss_fwd MpcOvarianCancerLeftOvaryD2+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_forward 0 2575 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor2.CNhs13092.11833-124G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11833-124G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_tpm_rev MpcOvarianCancerLeftOvaryD2- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_reverse 1 2576 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor2.CNhs13092.11833-124G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11833-124G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_ctss_rev MpcOvarianCancerLeftOvaryD2- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_reverse 0 2576 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor2.CNhs13092.11833-124G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11833-124G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_tpm_fwd MpcOvarianCancerLeftOvaryD3+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_forward 1 2577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor3.CNhs12376.11760-123H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11760-123H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_ctss_fwd MpcOvarianCancerLeftOvaryD3+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_forward 0 2577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor3.CNhs12376.11760-123H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11760-123H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_tpm_rev MpcOvarianCancerLeftOvaryD3- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_reverse 1 2578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor3.CNhs12376.11760-123H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11760-123H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_ctss_rev MpcOvarianCancerLeftOvaryD3- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_reverse 0 2578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor3.CNhs12376.11760-123H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11760-123H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor4_CNhs13094_tpm_fwd MpcOvarianCancerLeftOvaryD4+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor4_CNhs13094_11836-124G9_forward 1 2579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11836-124G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor4.CNhs13094.11836-124G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor4_CNhs13094_11836-124G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11836-124G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor4_CNhs13094_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11836-124G9\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor4_CNhs13094_ctss_fwd MpcOvarianCancerLeftOvaryD4+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor4_CNhs13094_11836-124G9_forward 0 2579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11836-124G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor4.CNhs13094.11836-124G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor4_CNhs13094_11836-124G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11836-124G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor4_CNhs13094_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11836-124G9\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor4_CNhs13094_tpm_rev MpcOvarianCancerLeftOvaryD4- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor4_CNhs13094_11836-124G9_reverse 1 2580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11836-124G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor4.CNhs13094.11836-124G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor4_CNhs13094_11836-124G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11836-124G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor4_CNhs13094_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11836-124G9\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor4_CNhs13094_ctss_rev MpcOvarianCancerLeftOvaryD4- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor4_CNhs13094_11836-124G9_reverse 0 2580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11836-124G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor4.CNhs13094.11836-124G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor4_CNhs13094_11836-124G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11836-124G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor4_CNhs13094_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11836-124G9\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor1_CNhs12374_tpm_fwd MpcOvarianCancerMetastasisD1+ bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor1_CNhs12374_11758-123H3_forward 1 2581 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11758-123H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor1.CNhs12374.11758-123H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor1_CNhs12374_11758-123H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11758-123H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerMetastasisD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor1_CNhs12374_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11758-123H3\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor1_CNhs12374_ctss_fwd MpcOvarianCancerMetastasisD1+ bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor1_CNhs12374_11758-123H3_forward 0 2581 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11758-123H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor1.CNhs12374.11758-123H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor1_CNhs12374_11758-123H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11758-123H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerMetastasisD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor1_CNhs12374_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11758-123H3\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor1_CNhs12374_tpm_rev MpcOvarianCancerMetastasisD1- bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor1_CNhs12374_11758-123H3_reverse 1 2582 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11758-123H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor1.CNhs12374.11758-123H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor1_CNhs12374_11758-123H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11758-123H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerMetastasisD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor1_CNhs12374_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11758-123H3\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor1_CNhs12374_ctss_rev MpcOvarianCancerMetastasisD1- bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor1_CNhs12374_11758-123H3_reverse 0 2582 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11758-123H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor1.CNhs12374.11758-123H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor1_CNhs12374_11758-123H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11758-123H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerMetastasisD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor1_CNhs12374_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11758-123H3\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor2_CNhs13093_tpm_fwd MpcOvarianCancerMetastasisD2+ bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor2_CNhs13093_11835-124G8_forward 1 2583 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11835-124G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor2.CNhs13093.11835-124G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor2_CNhs13093_11835-124G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11835-124G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerMetastasisD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor2_CNhs13093_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11835-124G8\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor2_CNhs13093_ctss_fwd MpcOvarianCancerMetastasisD2+ bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor2_CNhs13093_11835-124G8_forward 0 2583 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11835-124G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor2.CNhs13093.11835-124G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor2_CNhs13093_11835-124G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11835-124G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerMetastasisD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor2_CNhs13093_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11835-124G8\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor2_CNhs13093_tpm_rev MpcOvarianCancerMetastasisD2- bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor2_CNhs13093_11835-124G8_reverse 1 2584 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11835-124G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor2.CNhs13093.11835-124G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor2_CNhs13093_11835-124G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11835-124G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerMetastasisD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor2_CNhs13093_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11835-124G8\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor2_CNhs13093_ctss_rev MpcOvarianCancerMetastasisD2- bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor2_CNhs13093_11835-124G8_reverse 0 2584 0 0 255 127 127 255 0 0 0 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cancer right ovary, donor3 (SOC-57-02)_CNhs12377_11761-123H6_forward 0 2594 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11761-123H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor3%20%28SOC-57-02%29.CNhs12377.11761-123H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02)_CNhs12377_11761-123H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11761-123H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerRightOvaryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702_CNhs12377_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11761-123H6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702_CNhs12377_tpm_rev MpcOvarianCancerRightOvaryD3- bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02)_CNhs12377_11761-123H6_reverse 1 2595 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11761-123H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor3%20%28SOC-57-02%29.CNhs12377.11761-123H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02)_CNhs12377_11761-123H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11761-123H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerRightOvaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702_CNhs12377_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11761-123H6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702G_CNhs13507_ctss_rev MpcOvarianCancerRightOvaryD3- bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G)_CNhs13507_11842-124H6_reverse 0 2595 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11842-124H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor3%20%28SOC-57-02-G%29.CNhs13507.11842-124H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G)_CNhs13507_11842-124H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11842-124H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerRightOvaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702G_CNhs13507_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11842-124H6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702G_CNhs13507_tpm_rev MpcOvarianCancerRightOvaryD3- bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G)_CNhs13507_11842-124H6_reverse 1 2596 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11842-124H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor3%20%28SOC-57-02-G%29.CNhs13507.11842-124H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G)_CNhs13507_11842-124H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11842-124H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerRightOvaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702G_CNhs13507_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11842-124H6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702_CNhs12377_ctss_rev MpcOvarianCancerRightOvaryD3- bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02)_CNhs12377_11761-123H6_reverse 0 2596 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11761-123H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor3%20%28SOC-57-02%29.CNhs12377.11761-123H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02)_CNhs12377_11761-123H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11761-123H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerRightOvaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702_CNhs12377_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11761-123H6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor4_CNhs13096_tpm_fwd MpcOvarianCancerRightOvaryD4+ bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor4_CNhs13096_11837-124H1_forward 1 2597 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11837-124H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor4.CNhs13096.11837-124H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor4_CNhs13096_11837-124H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11837-124H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerRightOvaryD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor4_CNhs13096_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11837-124H1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor4_CNhs13096_ctss_fwd MpcOvarianCancerRightOvaryD4+ bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor4_CNhs13096_11837-124H1_forward 0 2597 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11837-124H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor4.CNhs13096.11837-124H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor4_CNhs13096_11837-124H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11837-124H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerRightOvaryD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor4_CNhs13096_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11837-124H1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor4_CNhs13096_tpm_rev MpcOvarianCancerRightOvaryD4- bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor4_CNhs13096_11837-124H1_reverse 1 2598 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11837-124H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor4.CNhs13096.11837-124H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor4_CNhs13096_11837-124H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11837-124H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerRightOvaryD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor4_CNhs13096_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11837-124H1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor4_CNhs13096_ctss_rev MpcOvarianCancerRightOvaryD4- bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor4_CNhs13096_11837-124H1_reverse 0 2598 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11837-124H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor4.CNhs13096.11837-124H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor4_CNhs13096_11837-124H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11837-124H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerRightOvaryD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor4_CNhs13096_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11837-124H1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor0_CNhs10844_tpm_fwd MscAdiposeD0+ bigWig Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_forward 1 2599 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20adipose%2c%20donor0.CNhs10844.11217-116B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11217-116B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor0_CNhs10844_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor0_CNhs10844_ctss_fwd MscAdiposeD0+ bigWig Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_forward 0 2599 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20adipose%2c%20donor0.CNhs10844.11217-116B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11217-116B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor0_CNhs10844_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor0_CNhs10844_tpm_rev MscAdiposeD0- bigWig Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_reverse 1 2600 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20adipose%2c%20donor0.CNhs10844.11217-116B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11217-116B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor0_CNhs10844_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor0_CNhs10844_ctss_rev MscAdiposeD0- bigWig Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_reverse 0 2600 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20adipose%2c%20donor0.CNhs10844.11217-116B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11217-116B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor0_CNhs10844_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor1_CNhs11345_tpm_fwd MscAdiposeD1+ bigWig Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_forward 1 2601 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor1.CNhs11345.11537-120A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11537-120A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor1_CNhs11345_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor1_CNhs11345_ctss_fwd MscAdiposeD1+ bigWig Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_forward 0 2601 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor1.CNhs11345.11537-120A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11537-120A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor1_CNhs11345_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor1_CNhs11345_tpm_rev MscAdiposeD1- bigWig Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_reverse 1 2602 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor1.CNhs11345.11537-120A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11537-120A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor1_CNhs11345_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor1_CNhs11345_ctss_rev MscAdiposeD1- bigWig Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_reverse 0 2602 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor1.CNhs11345.11537-120A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11537-120A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor1_CNhs11345_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor2_CNhs12101_tpm_fwd MscAdiposeD2+ bigWig Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_forward 1 2603 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor2.CNhs12101.11617-122A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11617-122A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor2_CNhs12101_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor2_CNhs12101_ctss_fwd MscAdiposeD2+ bigWig Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_forward 0 2603 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor2.CNhs12101.11617-122A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11617-122A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor2_CNhs12101_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor2_CNhs12101_tpm_rev MscAdiposeD2- bigWig Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_reverse 1 2604 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor2.CNhs12101.11617-122A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11617-122A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor2_CNhs12101_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor2_CNhs12101_ctss_rev MscAdiposeD2- bigWig Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_reverse 0 2604 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor2.CNhs12101.11617-122A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11617-122A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor2_CNhs12101_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor3_CNhs12922_tpm_fwd MscAdiposeD3+ bigWig Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_forward 1 2605 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor3.CNhs12922.11698-123A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11698-123A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor3_CNhs12922_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor3_CNhs12922_ctss_fwd MscAdiposeD3+ bigWig Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_forward 0 2605 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor3.CNhs12922.11698-123A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11698-123A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor3_CNhs12922_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor3_CNhs12922_tpm_rev MscAdiposeD3- bigWig Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_reverse 1 2606 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor3.CNhs12922.11698-123A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11698-123A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor3_CNhs12922_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor3_CNhs12922_ctss_rev MscAdiposeD3- bigWig Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_reverse 0 2606 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor3.CNhs12922.11698-123A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11698-123A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor3_CNhs12922_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_tpm_fwd MscAmnioticMembraneD1+ bigWig Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_forward 1 2607 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor1.CNhs11349.11547-120B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11547-120B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAmnioticMembraneD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_ctss_fwd MscAmnioticMembraneD1+ bigWig Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_forward 0 2607 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor1.CNhs11349.11547-120B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11547-120B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAmnioticMembraneD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_tpm_rev MscAmnioticMembraneD1- bigWig Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_reverse 1 2608 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor1.CNhs11349.11547-120B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11547-120B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAmnioticMembraneD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_ctss_rev MscAmnioticMembraneD1- bigWig Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_reverse 0 2608 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor1.CNhs11349.11547-120B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11547-120B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAmnioticMembraneD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_tpm_fwd MscAmnioticMembraneD2+ bigWig Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_forward 1 2609 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor2.CNhs12104.11627-122B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11627-122B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAmnioticMembraneD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_ctss_fwd MscAmnioticMembraneD2+ bigWig Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_forward 0 2609 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor2.CNhs12104.11627-122B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11627-122B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAmnioticMembraneD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_tpm_rev MscAmnioticMembraneD2- bigWig Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_reverse 1 2610 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor2.CNhs12104.11627-122B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11627-122B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAmnioticMembraneD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_ctss_rev MscAmnioticMembraneD2- bigWig Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_reverse 0 2610 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor2.CNhs12104.11627-122B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11627-122B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAmnioticMembraneD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_tpm_fwd MscBoneMarrowD1+ bigWig Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_forward 1 2611 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor1.CNhs11344.11536-120A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11536-120A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_ctss_fwd MscBoneMarrowD1+ bigWig Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_forward 0 2611 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor1.CNhs11344.11536-120A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11536-120A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_tpm_rev MscBoneMarrowD1- bigWig Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_reverse 1 2612 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor1.CNhs11344.11536-120A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11536-120A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_ctss_rev MscBoneMarrowD1- bigWig Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_reverse 0 2612 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor1.CNhs11344.11536-120A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11536-120A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_tpm_fwd MscBoneMarrowD2+ bigWig Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_forward 1 2613 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor2.CNhs12100.11616-122A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11616-122A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_ctss_fwd MscBoneMarrowD2+ bigWig Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_forward 0 2613 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor2.CNhs12100.11616-122A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11616-122A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_tpm_rev MscBoneMarrowD2- bigWig Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_reverse 1 2614 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor2.CNhs12100.11616-122A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11616-122A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_ctss_rev MscBoneMarrowD2- bigWig Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_reverse 0 2614 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor2.CNhs12100.11616-122A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11616-122A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_tpm_fwd MscBoneMarrowD3+ bigWig Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_forward 1 2615 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor3.CNhs12126.11697-123A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11697-123A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_ctss_fwd MscBoneMarrowD3+ bigWig Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_forward 0 2615 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor3.CNhs12126.11697-123A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11697-123A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_tpm_rev MscBoneMarrowD3- bigWig Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_reverse 1 2616 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor3.CNhs12126.11697-123A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11697-123A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_ctss_rev MscBoneMarrowD3- bigWig Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_reverse 0 2616 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor3.CNhs12126.11697-123A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11697-123A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_tpm_fwd MscBoneMarrowD4+ bigWig Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_forward 1 2617 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor4.CNhs11316.11464-119B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11464-119B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_ctss_fwd MscBoneMarrowD4+ bigWig Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_forward 0 2617 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor4.CNhs11316.11464-119B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11464-119B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_tpm_rev MscBoneMarrowD4- bigWig Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_reverse 1 2618 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor4.CNhs11316.11464-119B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11464-119B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_ctss_rev MscBoneMarrowD4- bigWig Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_reverse 0 2618 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor4.CNhs11316.11464-119B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11464-119B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor0_CNhs10845_tpm_fwd MscHepaticD0+ bigWig Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_forward 1 2619 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20hepatic%2c%20donor0.CNhs10845.11218-116B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11218-116B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscHepaticD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsHepaticDonor0_CNhs10845_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor0_CNhs10845_ctss_fwd MscHepaticD0+ bigWig Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_forward 0 2619 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20hepatic%2c%20donor0.CNhs10845.11218-116B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11218-116B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscHepaticD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsHepaticDonor0_CNhs10845_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor0_CNhs10845_tpm_rev MscHepaticD0- bigWig Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_reverse 1 2620 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20hepatic%2c%20donor0.CNhs10845.11218-116B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11218-116B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscHepaticD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsHepaticDonor0_CNhs10845_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor0_CNhs10845_ctss_rev MscHepaticD0- bigWig Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_reverse 0 2620 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20hepatic%2c%20donor0.CNhs10845.11218-116B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11218-116B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscHepaticD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsHepaticDonor0_CNhs10845_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor1_CNhs11346_tpm_fwd MscHepaticD1+ bigWig Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_forward 1 2621 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor1.CNhs11346.11538-120A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11538-120A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscHepaticD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsHepaticDonor1_CNhs11346_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor1_CNhs11346_ctss_fwd MscHepaticD1+ bigWig Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_forward 0 2621 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor1.CNhs11346.11538-120A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11538-120A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscHepaticD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsHepaticDonor1_CNhs11346_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor1_CNhs11346_tpm_rev MscHepaticD1- bigWig Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_reverse 1 2622 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor1.CNhs11346.11538-120A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11538-120A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscHepaticD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsHepaticDonor1_CNhs11346_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor1_CNhs11346_ctss_rev MscHepaticD1- bigWig Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_reverse 0 2622 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor1.CNhs11346.11538-120A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11538-120A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscHepaticD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsHepaticDonor1_CNhs11346_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor2_CNhs12730_tpm_fwd MscHepaticD2+ bigWig Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_forward 1 2623 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor2.CNhs12730.11618-122A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11618-122A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscHepaticD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsHepaticDonor2_CNhs12730_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor2_CNhs12730_ctss_fwd MscHepaticD2+ bigWig Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_forward 0 2623 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor2.CNhs12730.11618-122A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11618-122A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscHepaticD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsHepaticDonor2_CNhs12730_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor2_CNhs12730_tpm_rev MscHepaticD2- bigWig Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_reverse 1 2624 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor2.CNhs12730.11618-122A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11618-122A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscHepaticD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsHepaticDonor2_CNhs12730_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor2_CNhs12730_ctss_rev MscHepaticD2- bigWig Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_reverse 0 2624 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor2.CNhs12730.11618-122A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11618-122A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscHepaticD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsHepaticDonor2_CNhs12730_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor0_CNhs12492_tpm_fwd MscUmbilicalD0+ bigWig Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_forward 1 2625 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20umbilical%2c%20donor0.CNhs12492.11214-116A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11214-116A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor0_CNhs12492_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor0_CNhs12492_ctss_fwd MscUmbilicalD0+ bigWig Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_forward 0 2625 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20umbilical%2c%20donor0.CNhs12492.11214-116A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11214-116A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor0_CNhs12492_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor0_CNhs12492_tpm_rev MscUmbilicalD0- bigWig Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_reverse 1 2626 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20umbilical%2c%20donor0.CNhs12492.11214-116A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11214-116A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor0_CNhs12492_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor0_CNhs12492_ctss_rev MscUmbilicalD0- bigWig Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_reverse 0 2626 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20umbilical%2c%20donor0.CNhs12492.11214-116A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11214-116A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor0_CNhs12492_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor1_CNhs11347_tpm_fwd MscUmbilicalD1+ bigWig Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_forward 1 2627 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor1.CNhs11347.11539-120A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11539-120A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor1_CNhs11347_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor1_CNhs11347_ctss_fwd MscUmbilicalD1+ bigWig Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_forward 0 2627 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor1.CNhs11347.11539-120A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11539-120A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor1_CNhs11347_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor1_CNhs11347_tpm_rev MscUmbilicalD1- bigWig Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_reverse 1 2628 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor1.CNhs11347.11539-120A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11539-120A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor1_CNhs11347_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor1_CNhs11347_ctss_rev MscUmbilicalD1- bigWig Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_reverse 0 2628 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor1.CNhs11347.11539-120A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11539-120A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor1_CNhs11347_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor2_CNhs12102_tpm_fwd MscUmbilicalD2+ bigWig Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_forward 1 2629 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor2.CNhs12102.11619-122A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11619-122A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor2_CNhs12102_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor2_CNhs12102_ctss_fwd MscUmbilicalD2+ bigWig Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_forward 0 2629 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor2.CNhs12102.11619-122A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11619-122A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor2_CNhs12102_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor2_CNhs12102_tpm_rev MscUmbilicalD2- bigWig Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_reverse 1 2630 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor2.CNhs12102.11619-122A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11619-122A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor2_CNhs12102_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor2_CNhs12102_ctss_rev MscUmbilicalD2- bigWig Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_reverse 0 2630 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor2.CNhs12102.11619-122A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11619-122A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor2_CNhs12102_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor3_CNhs12127_tpm_fwd MscUmbilicalD3+ bigWig Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_forward 1 2631 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor3.CNhs12127.11700-123A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11700-123A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor3_CNhs12127_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor3_CNhs12127_ctss_fwd MscUmbilicalD3+ bigWig Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_forward 0 2631 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor3.CNhs12127.11700-123A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11700-123A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor3_CNhs12127_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor3_CNhs12127_tpm_rev MscUmbilicalD3- bigWig Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_reverse 1 2632 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor3.CNhs12127.11700-123A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11700-123A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor3_CNhs12127_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor3_CNhs12127_ctss_rev MscUmbilicalD3- bigWig Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_reverse 0 2632 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor3.CNhs12127.11700-123A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11700-123A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor3_CNhs12127_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsVertebralDonor1_CNhs10846_tpm_fwd MscVertebralD1+ bigWig Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_forward 1 2633 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20Vertebral%2c%20donor1.CNhs10846.11219-116B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11219-116B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscVertebralD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsVertebralDonor1_CNhs10846_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsVertebralDonor1_CNhs10846_ctss_fwd MscVertebralD1+ bigWig Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_forward 0 2633 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20Vertebral%2c%20donor1.CNhs10846.11219-116B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11219-116B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscVertebralD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsVertebralDonor1_CNhs10846_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsVertebralDonor1_CNhs10846_tpm_rev MscVertebralD1- bigWig Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_reverse 1 2634 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20Vertebral%2c%20donor1.CNhs10846.11219-116B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11219-116B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscVertebralD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsVertebralDonor1_CNhs10846_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsVertebralDonor1_CNhs10846_ctss_rev MscVertebralD1- bigWig Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_reverse 0 2634 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20Vertebral%2c%20donor1.CNhs10846.11219-116B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11219-116B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscVertebralD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsVertebralDonor1_CNhs10846_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_tpm_fwd MscWharton'sJellyD1+ bigWig Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_forward 1 2635 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20Wharton%27s%20Jelly%2c%20donor1.CNhs11057.11548-120B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11548-120B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscWharton'sJellyD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_ctss_fwd MscWharton'sJellyD1+ bigWig Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_forward 0 2635 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20Wharton%27s%20Jelly%2c%20donor1.CNhs11057.11548-120B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11548-120B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscWharton'sJellyD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_tpm_rev MscWharton'sJellyD1- bigWig Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_reverse 1 2636 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20Wharton%27s%20Jelly%2c%20donor1.CNhs11057.11548-120B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11548-120B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscWharton'sJellyD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_ctss_rev MscWharton'sJellyD1- bigWig Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_reverse 0 2636 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20Wharton%27s%20Jelly%2c%20donor1.CNhs11057.11548-120B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11548-120B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscWharton'sJellyD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9\ urlLabel FANTOM5 Details:\ MyoblastDonor1_CNhs10870_tpm_fwd MyoblastD1+ bigWig Myoblast, donor1_CNhs10870_11241-116D8_forward 1 2637 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor1.CNhs10870.11241-116D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast, donor1_CNhs10870_11241-116D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11241-116D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MyoblastDonor1_CNhs10870_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8\ urlLabel FANTOM5 Details:\ MyoblastDonor1_CNhs10870_ctss_fwd MyoblastD1+ bigWig Myoblast, donor1_CNhs10870_11241-116D8_forward 0 2637 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor1.CNhs10870.11241-116D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast, donor1_CNhs10870_11241-116D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11241-116D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MyoblastDonor1_CNhs10870_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8\ urlLabel FANTOM5 Details:\ MyoblastDonor1_CNhs10870_tpm_rev MyoblastD1- bigWig Myoblast, donor1_CNhs10870_11241-116D8_reverse 1 2638 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor1.CNhs10870.11241-116D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast, donor1_CNhs10870_11241-116D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11241-116D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MyoblastDonor1_CNhs10870_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8\ urlLabel FANTOM5 Details:\ MyoblastDonor1_CNhs10870_ctss_rev MyoblastD1- bigWig Myoblast, donor1_CNhs10870_11241-116D8_reverse 0 2638 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor1.CNhs10870.11241-116D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast, donor1_CNhs10870_11241-116D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11241-116D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MyoblastDonor1_CNhs10870_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8\ urlLabel FANTOM5 Details:\ MyoblastDonor2_CNhs11965_tpm_fwd MyoblastD2+ bigWig Myoblast, donor2_CNhs11965_11322-117D8_forward 1 2639 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor2.CNhs11965.11322-117D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast, donor2_CNhs11965_11322-117D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11322-117D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MyoblastDonor2_CNhs11965_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8\ urlLabel FANTOM5 Details:\ MyoblastDonor2_CNhs11965_ctss_fwd MyoblastD2+ bigWig Myoblast, donor2_CNhs11965_11322-117D8_forward 0 2639 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor2.CNhs11965.11322-117D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast, donor2_CNhs11965_11322-117D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11322-117D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MyoblastDonor2_CNhs11965_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8\ urlLabel FANTOM5 Details:\ MyoblastDonor2_CNhs11965_tpm_rev MyoblastD2- bigWig Myoblast, donor2_CNhs11965_11322-117D8_reverse 1 2640 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor2.CNhs11965.11322-117D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast, donor2_CNhs11965_11322-117D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11322-117D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MyoblastDonor2_CNhs11965_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8\ urlLabel FANTOM5 Details:\ MyoblastDonor2_CNhs11965_ctss_rev MyoblastD2- bigWig Myoblast, donor2_CNhs11965_11322-117D8_reverse 0 2640 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor2.CNhs11965.11322-117D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast, donor2_CNhs11965_11322-117D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11322-117D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MyoblastDonor2_CNhs11965_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8\ urlLabel FANTOM5 Details:\ MyoblastDonor3_CNhs11908_tpm_fwd MyoblastD3+ bigWig Myoblast, donor3_CNhs11908_11398-118D3_forward 1 2641 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor3.CNhs11908.11398-118D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast, donor3_CNhs11908_11398-118D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11398-118D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MyoblastDonor3_CNhs11908_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3\ urlLabel FANTOM5 Details:\ MyoblastDonor3_CNhs11908_ctss_fwd MyoblastD3+ bigWig Myoblast, donor3_CNhs11908_11398-118D3_forward 0 2641 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor3.CNhs11908.11398-118D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast, donor3_CNhs11908_11398-118D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11398-118D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MyoblastDonor3_CNhs11908_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3\ urlLabel FANTOM5 Details:\ MyoblastDonor3_CNhs11908_tpm_rev MyoblastD3- bigWig Myoblast, donor3_CNhs11908_11398-118D3_reverse 1 2642 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor3.CNhs11908.11398-118D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast, donor3_CNhs11908_11398-118D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11398-118D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MyoblastDonor3_CNhs11908_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3\ urlLabel FANTOM5 Details:\ MyoblastDonor3_CNhs11908_ctss_rev MyoblastD3- bigWig Myoblast, donor3_CNhs11908_11398-118D3_reverse 0 2642 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor3.CNhs11908.11398-118D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast, donor3_CNhs11908_11398-118D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11398-118D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MyoblastDonor3_CNhs11908_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor1TechRep1_CNhs12589_tpm_fwd NasalEpithelialCellsD1Tr1+ bigWig nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_forward 1 2643 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep1.CNhs12589.12226-129F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NasalEpithelialCellsD1Tr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NasalEpithelialCellsDonor1TechRep1_CNhs12589_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor1TechRep1_CNhs12589_ctss_fwd NasalEpithelialCellsD1Tr1+ bigWig nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_forward 0 2643 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep1.CNhs12589.12226-129F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NasalEpithelialCellsD1Tr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NasalEpithelialCellsDonor1TechRep1_CNhs12589_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor1TechRep1_CNhs12589_tpm_rev NasalEpithelialCellsD1Tr1- bigWig nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_reverse 1 2644 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep1.CNhs12589.12226-129F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NasalEpithelialCellsD1Tr1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NasalEpithelialCellsDonor1TechRep1_CNhs12589_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor1TechRep1_CNhs12589_ctss_rev NasalEpithelialCellsD1Tr1- bigWig nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_reverse 0 2644 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep1.CNhs12589.12226-129F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NasalEpithelialCellsD1Tr1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NasalEpithelialCellsDonor1TechRep1_CNhs12589_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor2_CNhs12574_tpm_fwd NasalEpithelialCellsD2+ bigWig nasal epithelial cells, donor2_CNhs12574_12227-129F4_forward 1 2645 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor2.CNhs12574.12227-129F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel nasal epithelial cells, donor2_CNhs12574_12227-129F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12227-129F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NasalEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NasalEpithelialCellsDonor2_CNhs12574_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor2_CNhs12574_ctss_fwd NasalEpithelialCellsD2+ bigWig nasal epithelial cells, donor2_CNhs12574_12227-129F4_forward 0 2645 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor2.CNhs12574.12227-129F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel nasal epithelial cells, donor2_CNhs12574_12227-129F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12227-129F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NasalEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NasalEpithelialCellsDonor2_CNhs12574_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor2_CNhs12574_tpm_rev NasalEpithelialCellsD2- bigWig nasal epithelial cells, donor2_CNhs12574_12227-129F4_reverse 1 2646 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor2.CNhs12574.12227-129F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel nasal epithelial cells, donor2_CNhs12574_12227-129F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12227-129F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NasalEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NasalEpithelialCellsDonor2_CNhs12574_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor2_CNhs12574_ctss_rev NasalEpithelialCellsD2- bigWig nasal epithelial cells, donor2_CNhs12574_12227-129F4_reverse 0 2646 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor2.CNhs12574.12227-129F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel nasal epithelial cells, donor2_CNhs12574_12227-129F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12227-129F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NasalEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NasalEpithelialCellsDonor2_CNhs12574_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor1_CNhs10859_tpm_fwd NaturalKillerCellsD1+ bigWig Natural Killer Cells, donor1_CNhs10859_11230-116C6_forward 1 2647 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor1.CNhs10859.11230-116C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Natural Killer Cells, donor1_CNhs10859_11230-116C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11230-116C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NaturalKillerCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NaturalKillerCellsDonor1_CNhs10859_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor1_CNhs10859_ctss_fwd NaturalKillerCellsD1+ bigWig Natural Killer Cells, donor1_CNhs10859_11230-116C6_forward 0 2647 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor1.CNhs10859.11230-116C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Natural Killer Cells, donor1_CNhs10859_11230-116C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11230-116C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NaturalKillerCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NaturalKillerCellsDonor1_CNhs10859_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor1_CNhs10859_tpm_rev NaturalKillerCellsD1- bigWig Natural Killer Cells, donor1_CNhs10859_11230-116C6_reverse 1 2648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor1.CNhs10859.11230-116C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Natural Killer Cells, donor1_CNhs10859_11230-116C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11230-116C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NaturalKillerCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NaturalKillerCellsDonor1_CNhs10859_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor1_CNhs10859_ctss_rev NaturalKillerCellsD1- bigWig Natural Killer Cells, donor1_CNhs10859_11230-116C6_reverse 0 2648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor1.CNhs10859.11230-116C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Natural Killer Cells, donor1_CNhs10859_11230-116C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11230-116C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NaturalKillerCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NaturalKillerCellsDonor1_CNhs10859_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor2_CNhs11957_tpm_fwd NaturalKillerCellsD2+ bigWig Natural Killer Cells, donor2_CNhs11957_11311-117C6_forward 1 2649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor2.CNhs11957.11311-117C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Natural Killer Cells, donor2_CNhs11957_11311-117C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11311-117C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NaturalKillerCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NaturalKillerCellsDonor2_CNhs11957_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor2_CNhs11957_ctss_fwd NaturalKillerCellsD2+ bigWig Natural Killer Cells, donor2_CNhs11957_11311-117C6_forward 0 2649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor2.CNhs11957.11311-117C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Natural Killer Cells, donor2_CNhs11957_11311-117C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11311-117C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NaturalKillerCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NaturalKillerCellsDonor2_CNhs11957_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor2_CNhs11957_tpm_rev NaturalKillerCellsD2- bigWig Natural Killer Cells, donor2_CNhs11957_11311-117C6_reverse 1 2650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor2.CNhs11957.11311-117C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Natural Killer Cells, donor2_CNhs11957_11311-117C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11311-117C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NaturalKillerCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NaturalKillerCellsDonor2_CNhs11957_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor2_CNhs11957_ctss_rev NaturalKillerCellsD2- bigWig Natural Killer Cells, donor2_CNhs11957_11311-117C6_reverse 0 2650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor2.CNhs11957.11311-117C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Natural Killer Cells, donor2_CNhs11957_11311-117C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11311-117C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NaturalKillerCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NaturalKillerCellsDonor2_CNhs11957_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor3_CNhs12001_tpm_fwd NaturalKillerCellsD3+ bigWig Natural Killer Cells, donor3_CNhs12001_11387-118C1_forward 1 2651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11387-118C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor3.CNhs12001.11387-118C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Natural Killer Cells, donor3_CNhs12001_11387-118C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11387-118C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NaturalKillerCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track 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/gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor3.CNhs12001.11387-118C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Natural Killer Cells, donor3_CNhs12001_11387-118C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11387-118C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NaturalKillerCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NaturalKillerCellsDonor3_CNhs12001_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11387-118C1\ urlLabel FANTOM5 Details:\ NeuralStemCellsDonor1_CNhs11063_tpm_fwd NeuralStemCellsD1+ bigWig Neural stem cells, donor1_CNhs11063_11275-116H6_forward 1 2653 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11275-116H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neural%20stem%20cells%2c%20donor1.CNhs11063.11275-116H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Neural stem cells, donor1_CNhs11063_11275-116H6_forward\ maxHeightPixels 100:8:8\ metadata 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http://fantom.gsc.riken.jp/5/sstar/FF:11275-116H6\ urlLabel FANTOM5 Details:\ NeuralStemCellsDonor1_CNhs11063_tpm_rev NeuralStemCellsD1- bigWig Neural stem cells, donor1_CNhs11063_11275-116H6_reverse 1 2654 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11275-116H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neural%20stem%20cells%2c%20donor1.CNhs11063.11275-116H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Neural stem cells, donor1_CNhs11063_11275-116H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11275-116H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeuralStemCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeuralStemCellsDonor1_CNhs11063_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11275-116H6\ urlLabel FANTOM5 Details:\ NeuralStemCellsDonor1_CNhs11063_ctss_rev NeuralStemCellsD1- bigWig Neural stem cells, donor1_CNhs11063_11275-116H6_reverse 0 2654 0 0 255 127 127 255 0 0 0 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strand=forward\ track NeuralStemCellsDonor2_CNhs11384_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11352-117H2\ urlLabel FANTOM5 Details:\ NeuralStemCellsDonor2_CNhs11384_tpm_rev NeuralStemCellsD2- bigWig Neural stem cells, donor2_CNhs11384_11352-117H2_reverse 1 2656 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11352-117H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neural%20stem%20cells%2c%20donor2.CNhs11384.11352-117H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Neural stem cells, donor2_CNhs11384_11352-117H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11352-117H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeuralStemCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeuralStemCellsDonor2_CNhs11384_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11352-117H2\ urlLabel FANTOM5 Details:\ NeuralStemCellsDonor2_CNhs11384_ctss_rev NeuralStemCellsD2- bigWig Neural stem cells, donor2_CNhs11384_11352-117H2_reverse 0 2656 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11352-117H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neural%20stem%20cells%2c%20donor2.CNhs11384.11352-117H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Neural stem cells, donor2_CNhs11384_11352-117H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11352-117H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeuralStemCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeuralStemCellsDonor2_CNhs11384_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11352-117H2\ urlLabel FANTOM5 Details:\ NeuronsDonor1_CNhs12338_tpm_fwd NeuronsD1+ bigWig Neurons, donor1_CNhs12338_11494-119E9_forward 1 2657 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11494-119E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor1.CNhs12338.11494-119E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Neurons, donor1_CNhs12338_11494-119E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11494-119E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeuronsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeuronsDonor1_CNhs12338_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11494-119E9\ urlLabel FANTOM5 Details:\ NeuronsDonor1_CNhs12338_ctss_fwd NeuronsD1+ bigWig Neurons, donor1_CNhs12338_11494-119E9_forward 0 2657 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11494-119E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor1.CNhs12338.11494-119E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Neurons, donor1_CNhs12338_11494-119E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11494-119E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeuronsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeuronsDonor1_CNhs12338_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11494-119E9\ urlLabel FANTOM5 Details:\ NeuronsDonor1_CNhs12338_tpm_rev NeuronsD1- bigWig Neurons, donor1_CNhs12338_11494-119E9_reverse 1 2658 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11494-119E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor1.CNhs12338.11494-119E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Neurons, donor1_CNhs12338_11494-119E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11494-119E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeuronsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeuronsDonor1_CNhs12338_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11494-119E9\ urlLabel FANTOM5 Details:\ NeuronsDonor1_CNhs12338_ctss_rev NeuronsD1- bigWig Neurons, donor1_CNhs12338_11494-119E9_reverse 0 2658 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11494-119E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor1.CNhs12338.11494-119E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Neurons, donor1_CNhs12338_11494-119E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11494-119E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeuronsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeuronsDonor1_CNhs12338_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11494-119E9\ urlLabel FANTOM5 Details:\ NeuronsDonor2_CNhs12726_tpm_fwd NeuronsD2+ bigWig Neurons, donor2_CNhs12726_11574-120E8_forward 1 2659 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11574-120E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor2.CNhs12726.11574-120E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Neurons, donor2_CNhs12726_11574-120E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11574-120E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeuronsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeuronsDonor2_CNhs12726_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11574-120E8\ urlLabel FANTOM5 Details:\ NeuronsDonor2_CNhs12726_ctss_fwd NeuronsD2+ bigWig Neurons, donor2_CNhs12726_11574-120E8_forward 0 2659 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11574-120E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor2.CNhs12726.11574-120E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Neurons, donor2_CNhs12726_11574-120E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11574-120E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeuronsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeuronsDonor2_CNhs12726_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11574-120E8\ urlLabel FANTOM5 Details:\ NeuronsDonor2_CNhs12726_tpm_rev NeuronsD2- bigWig Neurons, donor2_CNhs12726_11574-120E8_reverse 1 2660 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11574-120E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor2.CNhs12726.11574-120E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Neurons, donor2_CNhs12726_11574-120E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11574-120E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeuronsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeuronsDonor2_CNhs12726_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11574-120E8\ urlLabel FANTOM5 Details:\ NeuronsDonor2_CNhs12726_ctss_rev NeuronsD2- bigWig Neurons, donor2_CNhs12726_11574-120E8_reverse 0 2660 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11574-120E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor2.CNhs12726.11574-120E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Neurons, donor2_CNhs12726_11574-120E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11574-120E8 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NeuronsD3+ bigWig Neurons, donor3_CNhs13815_11655-122E8_forward 0 2661 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11655-122E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor3.CNhs13815.11655-122E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Neurons, donor3_CNhs13815_11655-122E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11655-122E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeuronsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeuronsDonor3_CNhs13815_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11655-122E8\ urlLabel FANTOM5 Details:\ NeuronsDonor3_CNhs13815_tpm_rev NeuronsD3- bigWig Neurons, donor3_CNhs13815_11655-122E8_reverse 1 2662 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11655-122E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor3.CNhs13815.11655-122E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Neurons, 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/gbdb/hg38/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor3.CNhs12063.11462-119B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Nucleus Pulposus Cell, donor3_CNhs12063_11462-119B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11462-119B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NucleusPulposusCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NucleusPulposusCellDonor3_CNhs12063_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11462-119B4\ urlLabel FANTOM5 Details:\ NucleusPulposusCellDonor3_CNhs12063_ctss_rev NucleusPulposusCellD3- bigWig Nucleus Pulposus Cell, donor3_CNhs12063_11462-119B4_reverse 0 2674 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11462-119B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor3.CNhs12063.11462-119B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Nucleus Pulposus Cell, donor3_CNhs12063_11462-119B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11462-119B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NucleusPulposusCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NucleusPulposusCellDonor3_CNhs12063_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11462-119B4\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor1_CNhs13816_tpm_fwd OlfactoryEpithelialCellsD1+ bigWig Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_forward 1 2675 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor1.CNhs13816.11933-125I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11933-125I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor1_CNhs13816_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor1_CNhs13816_ctss_fwd OlfactoryEpithelialCellsD1+ bigWig Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_forward 0 2675 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor1.CNhs13816.11933-125I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11933-125I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor1_CNhs13816_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor1_CNhs13816_tpm_rev OlfactoryEpithelialCellsD1- bigWig Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_reverse 1 2676 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor1.CNhs13816.11933-125I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11933-125I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor1_CNhs13816_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor1_CNhs13816_ctss_rev OlfactoryEpithelialCellsD1- bigWig Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_reverse 0 2676 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor1.CNhs13816.11933-125I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11933-125I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor1_CNhs13816_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor2_CNhs13817_tpm_fwd OlfactoryEpithelialCellsD2+ bigWig Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_forward 1 2677 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor2.CNhs13817.11934-125I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11934-125I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor2_CNhs13817_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor2_CNhs13817_ctss_fwd OlfactoryEpithelialCellsD2+ bigWig Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_forward 0 2677 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor2.CNhs13817.11934-125I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11934-125I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor2_CNhs13817_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor2_CNhs13817_tpm_rev OlfactoryEpithelialCellsD2- bigWig Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_reverse 1 2678 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor2.CNhs13817.11934-125I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11934-125I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor2_CNhs13817_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor2_CNhs13817_ctss_rev OlfactoryEpithelialCellsD2- bigWig Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_reverse 0 2678 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor2.CNhs13817.11934-125I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11934-125I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor2_CNhs13817_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor3_CNhs13818_tpm_fwd OlfactoryEpithelialCellsD3+ bigWig Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_forward 1 2679 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor3.CNhs13818.11935-125I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11935-125I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor3_CNhs13818_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor3_CNhs13818_ctss_fwd OlfactoryEpithelialCellsD3+ bigWig Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_forward 0 2679 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor3.CNhs13818.11935-125I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11935-125I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor3_CNhs13818_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor3_CNhs13818_tpm_rev OlfactoryEpithelialCellsD3- bigWig Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_reverse 1 2680 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor3.CNhs13818.11935-125I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11935-125I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor3_CNhs13818_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor3_CNhs13818_ctss_rev OlfactoryEpithelialCellsD3- bigWig Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_reverse 0 2680 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor3.CNhs13818.11935-125I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11935-125I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor3_CNhs13818_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor4_CNhs13819_tpm_fwd OlfactoryEpithelialCellsD4+ bigWig Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_forward 1 2681 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor4.CNhs13819.11936-126A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11936-126A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor4_CNhs13819_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor4_CNhs13819_ctss_fwd OlfactoryEpithelialCellsD4+ bigWig Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_forward 0 2681 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor4.CNhs13819.11936-126A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11936-126A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor4_CNhs13819_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor4_CNhs13819_tpm_rev OlfactoryEpithelialCellsD4- bigWig Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_reverse 1 2682 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor4.CNhs13819.11936-126A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11936-126A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor4_CNhs13819_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor4_CNhs13819_ctss_rev OlfactoryEpithelialCellsD4- bigWig Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_reverse 0 2682 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor4.CNhs13819.11936-126A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11936-126A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor4_CNhs13819_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1\ urlLabel FANTOM5 Details:\ OligodendrocytePrecursorsDonor1_CNhs12586_tpm_fwd OligodendrocytePrecursorsD1+ bigWig Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_forward 1 2683 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Oligodendrocyte%20-%20precursors%2c%20donor1.CNhs12586.11496-119F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11496-119F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OligodendrocytePrecursorsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OligodendrocytePrecursorsDonor1_CNhs12586_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2\ urlLabel FANTOM5 Details:\ OligodendrocytePrecursorsDonor1_CNhs12586_ctss_fwd OligodendrocytePrecursorsD1+ bigWig Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_forward 0 2683 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Oligodendrocyte%20-%20precursors%2c%20donor1.CNhs12586.11496-119F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11496-119F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OligodendrocytePrecursorsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OligodendrocytePrecursorsDonor1_CNhs12586_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2\ urlLabel FANTOM5 Details:\ OligodendrocytePrecursorsDonor1_CNhs12586_tpm_rev OligodendrocytePrecursorsD1- bigWig Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_reverse 1 2684 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Oligodendrocyte%20-%20precursors%2c%20donor1.CNhs12586.11496-119F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11496-119F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OligodendrocytePrecursorsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OligodendrocytePrecursorsDonor1_CNhs12586_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2\ urlLabel FANTOM5 Details:\ OligodendrocytePrecursorsDonor1_CNhs12586_ctss_rev OligodendrocytePrecursorsD1- bigWig Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_reverse 0 2684 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Oligodendrocyte%20-%20precursors%2c%20donor1.CNhs12586.11496-119F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11496-119F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OligodendrocytePrecursorsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OligodendrocytePrecursorsDonor1_CNhs12586_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2\ urlLabel FANTOM5 Details:\ OsteoblastDonor1_CNhs11078_tpm_fwd OsteoblastD1+ bigWig Osteoblast, donor1_CNhs11078_11277-116H8_forward 1 2685 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor1.CNhs11078.11277-116H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Osteoblast, donor1_CNhs11078_11277-116H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11277-116H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDonor1_CNhs11078_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8\ urlLabel FANTOM5 Details:\ OsteoblastDonor1_CNhs11078_ctss_fwd OsteoblastD1+ bigWig Osteoblast, donor1_CNhs11078_11277-116H8_forward 0 2685 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor1.CNhs11078.11277-116H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Osteoblast, donor1_CNhs11078_11277-116H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11277-116H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDonor1_CNhs11078_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8\ urlLabel FANTOM5 Details:\ OsteoblastDonor1_CNhs11078_tpm_rev OsteoblastD1- bigWig Osteoblast, donor1_CNhs11078_11277-116H8_reverse 1 2686 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor1.CNhs11078.11277-116H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Osteoblast, donor1_CNhs11078_11277-116H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11277-116H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDonor1_CNhs11078_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8\ urlLabel FANTOM5 Details:\ OsteoblastDonor1_CNhs11078_ctss_rev OsteoblastD1- bigWig Osteoblast, donor1_CNhs11078_11277-116H8_reverse 0 2686 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor1.CNhs11078.11277-116H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Osteoblast, donor1_CNhs11078_11277-116H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11277-116H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDonor1_CNhs11078_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8\ urlLabel FANTOM5 Details:\ OsteoblastDonor2_CNhs11385_tpm_fwd OsteoblastD2+ bigWig Osteoblast, donor2_CNhs11385_11354-117H4_forward 1 2687 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor2.CNhs11385.11354-117H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Osteoblast, donor2_CNhs11385_11354-117H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11354-117H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDonor2_CNhs11385_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4\ urlLabel FANTOM5 Details:\ OsteoblastDonor2_CNhs11385_ctss_fwd OsteoblastD2+ bigWig Osteoblast, donor2_CNhs11385_11354-117H4_forward 0 2687 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor2.CNhs11385.11354-117H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Osteoblast, donor2_CNhs11385_11354-117H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11354-117H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDonor2_CNhs11385_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4\ urlLabel FANTOM5 Details:\ OsteoblastDonor2_CNhs11385_tpm_rev OsteoblastD2- bigWig Osteoblast, donor2_CNhs11385_11354-117H4_reverse 1 2688 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor2.CNhs11385.11354-117H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Osteoblast, donor2_CNhs11385_11354-117H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11354-117H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDonor2_CNhs11385_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4\ urlLabel FANTOM5 Details:\ OsteoblastDonor2_CNhs11385_ctss_rev OsteoblastD2- bigWig Osteoblast, donor2_CNhs11385_11354-117H4_reverse 0 2688 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor2.CNhs11385.11354-117H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Osteoblast, donor2_CNhs11385_11354-117H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11354-117H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDonor2_CNhs11385_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4\ urlLabel FANTOM5 Details:\ OsteoblastDonor3_CNhs12036_tpm_fwd OsteoblastD3+ bigWig Osteoblast, donor3_CNhs12036_11426-118G4_forward 1 2689 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor3.CNhs12036.11426-118G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Osteoblast, donor3_CNhs12036_11426-118G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11426-118G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDonor3_CNhs12036_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4\ urlLabel FANTOM5 Details:\ OsteoblastDonor3_CNhs12036_ctss_fwd OsteoblastD3+ bigWig Osteoblast, donor3_CNhs12036_11426-118G4_forward 0 2689 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor3.CNhs12036.11426-118G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Osteoblast, donor3_CNhs12036_11426-118G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11426-118G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDonor3_CNhs12036_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4\ urlLabel FANTOM5 Details:\ OsteoblastDonor3_CNhs12036_tpm_rev OsteoblastD3- bigWig Osteoblast, donor3_CNhs12036_11426-118G4_reverse 1 2690 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor3.CNhs12036.11426-118G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Osteoblast, donor3_CNhs12036_11426-118G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11426-118G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDonor3_CNhs12036_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4\ urlLabel FANTOM5 Details:\ OsteoblastDonor3_CNhs12036_ctss_rev OsteoblastD3- bigWig Osteoblast, donor3_CNhs12036_11426-118G4_reverse 0 2690 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor3.CNhs12036.11426-118G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Osteoblast, donor3_CNhs12036_11426-118G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11426-118G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDonor3_CNhs12036_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor1_CNhs11311_tpm_fwd OsteoblastDifferentiatedD1+ bigWig Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_forward 1 2691 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor1.CNhs11311.11276-116H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11276-116H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastDifferentiatedD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDifferentiatedDonor1_CNhs11311_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor1_CNhs11311_ctss_fwd OsteoblastDifferentiatedD1+ bigWig Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_forward 0 2691 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor1.CNhs11311.11276-116H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11276-116H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastDifferentiatedD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDifferentiatedDonor1_CNhs11311_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor1_CNhs11311_tpm_rev OsteoblastDifferentiatedD1- bigWig Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_reverse 1 2692 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor1.CNhs11311.11276-116H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11276-116H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastDifferentiatedD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDifferentiatedDonor1_CNhs11311_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor1_CNhs11311_ctss_rev OsteoblastDifferentiatedD1- bigWig Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_reverse 0 2692 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor1.CNhs11311.11276-116H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11276-116H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastDifferentiatedD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDifferentiatedDonor1_CNhs11311_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor2_CNhs11980_tpm_fwd OsteoblastDifferentiatedD2+ bigWig Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_forward 1 2693 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor2.CNhs11980.11353-117H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11353-117H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastDifferentiatedD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDifferentiatedDonor2_CNhs11980_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor2_CNhs11980_ctss_fwd OsteoblastDifferentiatedD2+ bigWig Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_forward 0 2693 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor2.CNhs11980.11353-117H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11353-117H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastDifferentiatedD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDifferentiatedDonor2_CNhs11980_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor2_CNhs11980_tpm_rev OsteoblastDifferentiatedD2- bigWig Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_reverse 1 2694 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor2.CNhs11980.11353-117H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11353-117H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastDifferentiatedD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDifferentiatedDonor2_CNhs11980_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor2_CNhs11980_ctss_rev OsteoblastDifferentiatedD2- bigWig Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_reverse 0 2694 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor2.CNhs11980.11353-117H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11353-117H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastDifferentiatedD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDifferentiatedDonor2_CNhs11980_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor3_CNhs12035_tpm_fwd OsteoblastDifferentiatedD3+ bigWig Osteoblast - differentiated, donor3_CNhs12035_11425-118G3_forward 1 2695 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11425-118G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor3.CNhs12035.11425-118G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Osteoblast - differentiated, donor3_CNhs12035_11425-118G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11425-118G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastDifferentiatedD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDifferentiatedDonor3_CNhs12035_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11425-118G3\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor3_CNhs12035_ctss_fwd OsteoblastDifferentiatedD3+ bigWig Osteoblast - differentiated, donor3_CNhs12035_11425-118G3_forward 0 2695 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11425-118G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor3.CNhs12035.11425-118G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Osteoblast - differentiated, donor3_CNhs12035_11425-118G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11425-118G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastDifferentiatedD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDifferentiatedDonor3_CNhs12035_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11425-118G3\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor3_CNhs12035_tpm_rev OsteoblastDifferentiatedD3- bigWig Osteoblast - differentiated, donor3_CNhs12035_11425-118G3_reverse 1 2696 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11425-118G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor3.CNhs12035.11425-118G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Osteoblast - differentiated, donor3_CNhs12035_11425-118G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11425-118G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastDifferentiatedD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDifferentiatedDonor3_CNhs12035_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11425-118G3\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor3_CNhs12035_ctss_rev OsteoblastDifferentiatedD3- bigWig Osteoblast - differentiated, donor3_CNhs12035_11425-118G3_reverse 0 2696 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11425-118G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor3.CNhs12035.11425-118G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Osteoblast - differentiated, donor3_CNhs12035_11425-118G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11425-118G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastDifferentiatedD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDifferentiatedDonor3_CNhs12035_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11425-118G3\ urlLabel FANTOM5 Details:\ PancreaticStromalCellsDonor1_CNhs10877_tpm_fwd PancreaticStromalCellsD1+ bigWig Pancreatic stromal cells, donor1_CNhs10877_11249-116E7_forward 1 2697 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Pancreatic%20stromal%20cells%2c%20donor1.CNhs10877.11249-116E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Pancreatic stromal cells, donor1_CNhs10877_11249-116E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11249-116E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PancreaticStromalCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PancreaticStromalCellsDonor1_CNhs10877_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7\ urlLabel FANTOM5 Details:\ PancreaticStromalCellsDonor1_CNhs10877_ctss_fwd PancreaticStromalCellsD1+ bigWig Pancreatic stromal cells, donor1_CNhs10877_11249-116E7_forward 0 2697 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Pancreatic%20stromal%20cells%2c%20donor1.CNhs10877.11249-116E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Pancreatic stromal cells, donor1_CNhs10877_11249-116E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11249-116E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PancreaticStromalCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PancreaticStromalCellsDonor1_CNhs10877_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7\ urlLabel FANTOM5 Details:\ PancreaticStromalCellsDonor1_CNhs10877_tpm_rev PancreaticStromalCellsD1- bigWig Pancreatic stromal cells, donor1_CNhs10877_11249-116E7_reverse 1 2698 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Pancreatic%20stromal%20cells%2c%20donor1.CNhs10877.11249-116E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Pancreatic stromal cells, donor1_CNhs10877_11249-116E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11249-116E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PancreaticStromalCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PancreaticStromalCellsDonor1_CNhs10877_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7\ urlLabel FANTOM5 Details:\ PancreaticStromalCellsDonor1_CNhs10877_ctss_rev PancreaticStromalCellsD1- bigWig Pancreatic stromal cells, donor1_CNhs10877_11249-116E7_reverse 0 2698 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Pancreatic%20stromal%20cells%2c%20donor1.CNhs10877.11249-116E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Pancreatic stromal cells, donor1_CNhs10877_11249-116E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11249-116E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PancreaticStromalCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PancreaticStromalCellsDonor1_CNhs10877_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7\ urlLabel FANTOM5 Details:\ 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subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PeripheralBloodMononuclearCellsDonor1_CNhs10860_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11231-116C7\ urlLabel FANTOM5 Details:\ PeripheralBloodMononuclearCellsDonor2_CNhs11958_tpm_fwd PeripheralBloodMononuclearCellsD2+ bigWig Peripheral Blood Mononuclear Cells, donor2_CNhs11958_11312-117C7_forward 1 2711 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11312-117C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Peripheral%20Blood%20Mononuclear%20Cells%2c%20donor2.CNhs11958.11312-117C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Peripheral Blood Mononuclear Cells, donor2_CNhs11958_11312-117C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11312-117C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PeripheralBloodMononuclearCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PeripheralBloodMononuclearCellsDonor2_CNhs11958_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11312-117C7\ urlLabel FANTOM5 Details:\ PeripheralBloodMononuclearCellsDonor2_CNhs11958_ctss_fwd PeripheralBloodMononuclearCellsD2+ bigWig Peripheral Blood Mononuclear Cells, donor2_CNhs11958_11312-117C7_forward 0 2711 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11312-117C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Peripheral%20Blood%20Mononuclear%20Cells%2c%20donor2.CNhs11958.11312-117C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Peripheral Blood Mononuclear Cells, donor2_CNhs11958_11312-117C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11312-117C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PeripheralBloodMononuclearCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PeripheralBloodMononuclearCellsDonor2_CNhs11958_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11312-117C7\ urlLabel FANTOM5 Details:\ PeripheralBloodMononuclearCellsDonor2_CNhs11958_tpm_rev PeripheralBloodMononuclearCellsD2- bigWig Peripheral Blood Mononuclear Cells, donor2_CNhs11958_11312-117C7_reverse 1 2712 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11312-117C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Peripheral%20Blood%20Mononuclear%20Cells%2c%20donor2.CNhs11958.11312-117C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Peripheral Blood Mononuclear Cells, donor2_CNhs11958_11312-117C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11312-117C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PeripheralBloodMononuclearCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PeripheralBloodMononuclearCellsDonor2_CNhs11958_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11312-117C7\ urlLabel FANTOM5 Details:\ PeripheralBloodMononuclearCellsDonor2_CNhs11958_ctss_rev PeripheralBloodMononuclearCellsD2- bigWig Peripheral Blood Mononuclear Cells, donor2_CNhs11958_11312-117C7_reverse 0 2712 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11312-117C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Peripheral%20Blood%20Mononuclear%20Cells%2c%20donor2.CNhs11958.11312-117C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Peripheral Blood Mononuclear Cells, donor2_CNhs11958_11312-117C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11312-117C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PeripheralBloodMononuclearCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PeripheralBloodMononuclearCellsDonor2_CNhs11958_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11312-117C7\ urlLabel FANTOM5 Details:\ PeripheralBloodMononuclearCellsDonor3_CNhs12002_tpm_fwd PeripheralBloodMononuclearCellsD3+ bigWig Peripheral Blood Mononuclear Cells, donor3_CNhs12002_11388-118C2_forward 1 2713 255 0 0 255 127 127 0 0 0 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/gbdb/hg38/fantom5/Peripheral%20Blood%20Mononuclear%20Cells%2c%20donor3.CNhs12002.11388-118C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Peripheral Blood Mononuclear Cells, donor3_CNhs12002_11388-118C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11388-118C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PeripheralBloodMononuclearCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PeripheralBloodMononuclearCellsDonor3_CNhs12002_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11388-118C2\ urlLabel FANTOM5 Details:\ PeripheralBloodMononuclearCellsDonor3_CNhs12002_tpm_rev PeripheralBloodMononuclearCellsD3- bigWig Peripheral Blood Mononuclear Cells, donor3_CNhs12002_11388-118C2_reverse 1 2714 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11388-118C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Peripheral%20Blood%20Mononuclear%20Cells%2c%20donor3.CNhs12002.11388-118C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Peripheral Blood Mononuclear Cells, donor3_CNhs12002_11388-118C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11388-118C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PeripheralBloodMononuclearCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PeripheralBloodMononuclearCellsDonor3_CNhs12002_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11388-118C2\ urlLabel FANTOM5 Details:\ PeripheralBloodMononuclearCellsDonor3_CNhs12002_ctss_rev PeripheralBloodMononuclearCellsD3- bigWig Peripheral Blood Mononuclear Cells, donor3_CNhs12002_11388-118C2_reverse 0 2714 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11388-118C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Peripheral%20Blood%20Mononuclear%20Cells%2c%20donor3.CNhs12002.11388-118C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Peripheral Blood Mononuclear Cells, donor3_CNhs12002_11388-118C2_reverse\ maxHeightPixels 100:8:8\ metadata 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strand=forward\ track PlacentalEpithelialCellsDonor1_CNhs11079_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor1_CNhs11079_ctss_fwd PlacentalEpithelialCellsD1+ bigWig Placental Epithelial Cells, donor1_CNhs11079_11278-116H9_forward 0 2715 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor1.CNhs11079.11278-116H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Placental Epithelial Cells, donor1_CNhs11079_11278-116H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11278-116H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentalEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PlacentalEpithelialCellsDonor1_CNhs11079_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor1_CNhs11079_tpm_rev PlacentalEpithelialCellsD1- bigWig Placental Epithelial Cells, donor1_CNhs11079_11278-116H9_reverse 1 2716 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor1.CNhs11079.11278-116H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Placental Epithelial Cells, donor1_CNhs11079_11278-116H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11278-116H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentalEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PlacentalEpithelialCellsDonor1_CNhs11079_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor1_CNhs11079_ctss_rev PlacentalEpithelialCellsD1- bigWig Placental Epithelial Cells, donor1_CNhs11079_11278-116H9_reverse 0 2716 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor1.CNhs11079.11278-116H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Placental Epithelial Cells, donor1_CNhs11079_11278-116H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11278-116H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentalEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PlacentalEpithelialCellsDonor1_CNhs11079_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor2_CNhs11386_tpm_fwd PlacentalEpithelialCellsD2+ bigWig Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_forward 1 2717 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor2.CNhs11386.11355-117H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11355-117H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentalEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PlacentalEpithelialCellsDonor2_CNhs11386_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor2_CNhs11386_ctss_fwd PlacentalEpithelialCellsD2+ bigWig Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_forward 0 2717 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor2.CNhs11386.11355-117H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11355-117H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentalEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PlacentalEpithelialCellsDonor2_CNhs11386_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor2_CNhs11386_tpm_rev PlacentalEpithelialCellsD2- bigWig Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_reverse 1 2718 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor2.CNhs11386.11355-117H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11355-117H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentalEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PlacentalEpithelialCellsDonor2_CNhs11386_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor2_CNhs11386_ctss_rev PlacentalEpithelialCellsD2- bigWig Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_reverse 0 2718 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor2.CNhs11386.11355-117H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11355-117H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentalEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PlacentalEpithelialCellsDonor2_CNhs11386_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor3_CNhs12037_tpm_fwd PlacentalEpithelialCellsD3+ bigWig Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_forward 1 2719 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor3.CNhs12037.11427-118G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11427-118G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentalEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PlacentalEpithelialCellsDonor3_CNhs12037_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor3_CNhs12037_ctss_fwd PlacentalEpithelialCellsD3+ bigWig Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_forward 0 2719 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor3.CNhs12037.11427-118G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11427-118G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentalEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PlacentalEpithelialCellsDonor3_CNhs12037_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor3_CNhs12037_tpm_rev PlacentalEpithelialCellsD3- bigWig Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_reverse 1 2720 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor3.CNhs12037.11427-118G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11427-118G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentalEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PlacentalEpithelialCellsDonor3_CNhs12037_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor3_CNhs12037_ctss_rev PlacentalEpithelialCellsD3- bigWig Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_reverse 0 2720 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor3.CNhs12037.11427-118G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11427-118G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentalEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PlacentalEpithelialCellsDonor3_CNhs12037_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor1_CNhs11052_tpm_fwd PreadipocyteBreastD1+ bigWig Preadipocyte - breast, donor1_CNhs11052_11467-119B9_forward 1 2721 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%2c%20donor1.CNhs11052.11467-119B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - breast, donor1_CNhs11052_11467-119B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11467-119B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteBreastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteBreastDonor1_CNhs11052_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor1_CNhs11052_ctss_fwd PreadipocyteBreastD1+ bigWig Preadipocyte - breast, donor1_CNhs11052_11467-119B9_forward 0 2721 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%2c%20donor1.CNhs11052.11467-119B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - breast, donor1_CNhs11052_11467-119B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11467-119B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteBreastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteBreastDonor1_CNhs11052_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor1_CNhs11052_tpm_rev PreadipocyteBreastD1- bigWig Preadipocyte - breast, donor1_CNhs11052_11467-119B9_reverse 1 2722 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%2c%20donor1.CNhs11052.11467-119B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - breast, donor1_CNhs11052_11467-119B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11467-119B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteBreastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteBreastDonor1_CNhs11052_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor1_CNhs11052_ctss_rev PreadipocyteBreastD1- bigWig Preadipocyte - breast, donor1_CNhs11052_11467-119B9_reverse 0 2722 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%2c%20donor1.CNhs11052.11467-119B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - breast, donor1_CNhs11052_11467-119B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11467-119B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteBreastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteBreastDonor1_CNhs11052_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor2_CNhs11971_tpm_fwd PreadipocyteBreastD2+ bigWig Preadipocyte - breast, donor2_CNhs11971_11328-117E5_forward 1 2723 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%2c%20donor2.CNhs11971.11328-117E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - breast, donor2_CNhs11971_11328-117E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11328-117E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteBreastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteBreastDonor2_CNhs11971_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor2_CNhs11971_ctss_fwd PreadipocyteBreastD2+ bigWig Preadipocyte - breast, donor2_CNhs11971_11328-117E5_forward 0 2723 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%2c%20donor2.CNhs11971.11328-117E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - breast, donor2_CNhs11971_11328-117E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11328-117E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteBreastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteBreastDonor2_CNhs11971_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor2_CNhs11971_tpm_rev PreadipocyteBreastD2- bigWig Preadipocyte - breast, donor2_CNhs11971_11328-117E5_reverse 1 2724 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%2c%20donor2.CNhs11971.11328-117E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - breast, donor2_CNhs11971_11328-117E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11328-117E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteBreastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteBreastDonor2_CNhs11971_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor2_CNhs11971_ctss_rev PreadipocyteBreastD2- bigWig Preadipocyte - breast, donor2_CNhs11971_11328-117E5_reverse 0 2724 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%2c%20donor2.CNhs11971.11328-117E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - breast, donor2_CNhs11971_11328-117E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11328-117E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteBreastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteBreastDonor2_CNhs11971_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor1_CNhs11065_tpm_fwd PreadipocyteOmentalD1+ bigWig Preadipocyte - omental, donor1_CNhs11065_11468-119C1_forward 1 2725 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor1.CNhs11065.11468-119C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - omental, donor1_CNhs11065_11468-119C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11468-119C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteOmentalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteOmentalDonor1_CNhs11065_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor1_CNhs11065_ctss_fwd PreadipocyteOmentalD1+ bigWig Preadipocyte - omental, donor1_CNhs11065_11468-119C1_forward 0 2725 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor1.CNhs11065.11468-119C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - omental, donor1_CNhs11065_11468-119C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11468-119C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteOmentalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteOmentalDonor1_CNhs11065_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor1_CNhs11065_tpm_rev PreadipocyteOmentalD1- bigWig Preadipocyte - omental, donor1_CNhs11065_11468-119C1_reverse 1 2726 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor1.CNhs11065.11468-119C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - omental, donor1_CNhs11065_11468-119C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11468-119C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteOmentalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteOmentalDonor1_CNhs11065_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor1_CNhs11065_ctss_rev PreadipocyteOmentalD1- bigWig Preadipocyte - omental, donor1_CNhs11065_11468-119C1_reverse 0 2726 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor1.CNhs11065.11468-119C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - omental, donor1_CNhs11065_11468-119C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11468-119C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteOmentalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteOmentalDonor1_CNhs11065_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor2_CNhs11902_tpm_fwd PreadipocyteOmentalD2+ bigWig Preadipocyte - omental, donor2_CNhs11902_11329-117E6_forward 1 2727 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor2.CNhs11902.11329-117E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - omental, donor2_CNhs11902_11329-117E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11329-117E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteOmentalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteOmentalDonor2_CNhs11902_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor2_CNhs11902_ctss_fwd PreadipocyteOmentalD2+ bigWig Preadipocyte - omental, donor2_CNhs11902_11329-117E6_forward 0 2727 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor2.CNhs11902.11329-117E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - omental, donor2_CNhs11902_11329-117E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11329-117E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteOmentalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteOmentalDonor2_CNhs11902_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor2_CNhs11902_tpm_rev PreadipocyteOmentalD2- bigWig Preadipocyte - omental, donor2_CNhs11902_11329-117E6_reverse 1 2728 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor2.CNhs11902.11329-117E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - omental, donor2_CNhs11902_11329-117E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11329-117E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteOmentalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteOmentalDonor2_CNhs11902_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor2_CNhs11902_ctss_rev PreadipocyteOmentalD2- bigWig Preadipocyte - omental, donor2_CNhs11902_11329-117E6_reverse 0 2728 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor2.CNhs11902.11329-117E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - omental, donor2_CNhs11902_11329-117E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11329-117E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteOmentalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteOmentalDonor2_CNhs11902_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor3_CNhs12013_tpm_fwd PreadipocyteOmentalD3+ bigWig Preadipocyte - omental, donor3_CNhs12013_11403-118D8_forward 1 2729 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor3.CNhs12013.11403-118D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - omental, donor3_CNhs12013_11403-118D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11403-118D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteOmentalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteOmentalDonor3_CNhs12013_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor3_CNhs12013_ctss_fwd PreadipocyteOmentalD3+ bigWig Preadipocyte - omental, donor3_CNhs12013_11403-118D8_forward 0 2729 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor3.CNhs12013.11403-118D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - omental, donor3_CNhs12013_11403-118D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11403-118D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteOmentalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteOmentalDonor3_CNhs12013_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor3_CNhs12013_tpm_rev PreadipocyteOmentalD3- bigWig Preadipocyte - omental, donor3_CNhs12013_11403-118D8_reverse 1 2730 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor3.CNhs12013.11403-118D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - omental, donor3_CNhs12013_11403-118D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11403-118D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteOmentalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteOmentalDonor3_CNhs12013_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor3_CNhs12013_ctss_rev PreadipocyteOmentalD3- bigWig Preadipocyte - omental, donor3_CNhs12013_11403-118D8_reverse 0 2730 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor3.CNhs12013.11403-118D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - omental, donor3_CNhs12013_11403-118D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11403-118D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteOmentalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteOmentalDonor3_CNhs12013_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8\ urlLabel FANTOM5 Details:\ PreadipocytePerirenalDonor1_CNhs12065_tpm_fwd PreadipocytePerirenalD1+ bigWig Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_forward 1 2731 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20perirenal%2c%20donor1.CNhs12065.11469-119C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11469-119C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocytePerirenalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocytePerirenalDonor1_CNhs12065_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2\ urlLabel FANTOM5 Details:\ PreadipocytePerirenalDonor1_CNhs12065_ctss_fwd PreadipocytePerirenalD1+ bigWig Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_forward 0 2731 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20perirenal%2c%20donor1.CNhs12065.11469-119C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11469-119C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocytePerirenalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocytePerirenalDonor1_CNhs12065_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2\ urlLabel FANTOM5 Details:\ PreadipocytePerirenalDonor1_CNhs12065_tpm_rev PreadipocytePerirenalD1- bigWig Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_reverse 1 2732 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20perirenal%2c%20donor1.CNhs12065.11469-119C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11469-119C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocytePerirenalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocytePerirenalDonor1_CNhs12065_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2\ urlLabel FANTOM5 Details:\ PreadipocytePerirenalDonor1_CNhs12065_ctss_rev PreadipocytePerirenalD1- bigWig Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_reverse 0 2732 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20perirenal%2c%20donor1.CNhs12065.11469-119C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11469-119C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocytePerirenalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocytePerirenalDonor1_CNhs12065_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor1_CNhs11081_tpm_fwd PreadipocyteSubcutaneousD1+ bigWig Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_forward 1 2733 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor1.CNhs11081.11279-116I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11279-116I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteSubcutaneousD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteSubcutaneousDonor1_CNhs11081_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor1_CNhs11081_ctss_fwd PreadipocyteSubcutaneousD1+ bigWig Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_forward 0 2733 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor1.CNhs11081.11279-116I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11279-116I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteSubcutaneousD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteSubcutaneousDonor1_CNhs11081_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor1_CNhs11081_tpm_rev PreadipocyteSubcutaneousD1- bigWig Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_reverse 1 2734 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor1.CNhs11081.11279-116I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11279-116I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteSubcutaneousD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteSubcutaneousDonor1_CNhs11081_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor1_CNhs11081_ctss_rev PreadipocyteSubcutaneousD1- bigWig Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_reverse 0 2734 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor1.CNhs11081.11279-116I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11279-116I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteSubcutaneousD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteSubcutaneousDonor1_CNhs11081_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor2_CNhs11981_tpm_fwd PreadipocyteSubcutaneousD2+ bigWig Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_forward 1 2735 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor2.CNhs11981.11356-117H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11356-117H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteSubcutaneousD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteSubcutaneousDonor2_CNhs11981_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor2_CNhs11981_ctss_fwd PreadipocyteSubcutaneousD2+ bigWig Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_forward 0 2735 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor2.CNhs11981.11356-117H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11356-117H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteSubcutaneousD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteSubcutaneousDonor2_CNhs11981_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor2_CNhs11981_tpm_rev PreadipocyteSubcutaneousD2- bigWig Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_reverse 1 2736 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor2.CNhs11981.11356-117H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11356-117H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteSubcutaneousD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteSubcutaneousDonor2_CNhs11981_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor2_CNhs11981_ctss_rev PreadipocyteSubcutaneousD2- bigWig Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_reverse 0 2736 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor2.CNhs11981.11356-117H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11356-117H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteSubcutaneousD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteSubcutaneousDonor2_CNhs11981_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor3_CNhs12038_tpm_fwd PreadipocyteSubcutaneousD3+ bigWig Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_forward 1 2737 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor3.CNhs12038.11428-118G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11428-118G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteSubcutaneousD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteSubcutaneousDonor3_CNhs12038_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor3_CNhs12038_ctss_fwd PreadipocyteSubcutaneousD3+ bigWig Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_forward 0 2737 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor3.CNhs12038.11428-118G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11428-118G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteSubcutaneousD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteSubcutaneousDonor3_CNhs12038_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor3_CNhs12038_tpm_rev PreadipocyteSubcutaneousD3- bigWig Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_reverse 1 2738 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor3.CNhs12038.11428-118G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11428-118G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteSubcutaneousD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteSubcutaneousDonor3_CNhs12038_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor3_CNhs12038_ctss_rev PreadipocyteSubcutaneousD3- bigWig Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_reverse 0 2738 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor3.CNhs12038.11428-118G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11428-118G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteSubcutaneousD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteSubcutaneousDonor3_CNhs12038_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor1_CNhs11082_tpm_fwd PreadipocyteVisceralD1+ bigWig Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_forward 1 2739 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor1.CNhs11082.11280-116I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11280-116I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteVisceralD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteVisceralDonor1_CNhs11082_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor1_CNhs11082_ctss_fwd PreadipocyteVisceralD1+ bigWig Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_forward 0 2739 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor1.CNhs11082.11280-116I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11280-116I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteVisceralD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteVisceralDonor1_CNhs11082_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor1_CNhs11082_tpm_rev PreadipocyteVisceralD1- bigWig Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_reverse 1 2740 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor1.CNhs11082.11280-116I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11280-116I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteVisceralD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteVisceralDonor1_CNhs11082_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor1_CNhs11082_ctss_rev PreadipocyteVisceralD1- bigWig Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_reverse 0 2740 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor1.CNhs11082.11280-116I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11280-116I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteVisceralD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteVisceralDonor1_CNhs11082_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor2_CNhs11982_tpm_fwd PreadipocyteVisceralD2+ bigWig Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_forward 1 2741 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor2.CNhs11982.11357-117H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11357-117H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteVisceralD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteVisceralDonor2_CNhs11982_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor2_CNhs11982_ctss_fwd PreadipocyteVisceralD2+ bigWig Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_forward 0 2741 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor2.CNhs11982.11357-117H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11357-117H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteVisceralD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteVisceralDonor2_CNhs11982_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor2_CNhs11982_tpm_rev PreadipocyteVisceralD2- bigWig Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_reverse 1 2742 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor2.CNhs11982.11357-117H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11357-117H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteVisceralD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteVisceralDonor2_CNhs11982_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor2_CNhs11982_ctss_rev PreadipocyteVisceralD2- bigWig Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_reverse 0 2742 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor2.CNhs11982.11357-117H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11357-117H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteVisceralD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteVisceralDonor2_CNhs11982_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor3_CNhs12039_tpm_fwd PreadipocyteVisceralD3+ bigWig Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_forward 1 2743 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor3.CNhs12039.11429-118G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11429-118G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteVisceralD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteVisceralDonor3_CNhs12039_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor3_CNhs12039_ctss_fwd PreadipocyteVisceralD3+ bigWig Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_forward 0 2743 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor3.CNhs12039.11429-118G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11429-118G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteVisceralD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteVisceralDonor3_CNhs12039_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor3_CNhs12039_tpm_rev PreadipocyteVisceralD3- bigWig Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_reverse 1 2744 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor3.CNhs12039.11429-118G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11429-118G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteVisceralD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteVisceralDonor3_CNhs12039_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor3_CNhs12039_ctss_rev PreadipocyteVisceralD3- bigWig Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_reverse 0 2744 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor3.CNhs12039.11429-118G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11429-118G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteVisceralD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteVisceralDonor3_CNhs12039_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsPolarizedDonor1_CNhs10882_tpm_fwd ProstateEpithelialCellsD1+ bigWig Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_forward 1 2745 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%20%28polarized%29%2c%20donor1.CNhs10882.11253-116F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11253-116F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateEpithelialCellsPolarizedDonor1_CNhs10882_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsPolarizedDonor1_CNhs10882_ctss_fwd ProstateEpithelialCellsD1+ bigWig Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_forward 0 2745 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%20%28polarized%29%2c%20donor1.CNhs10882.11253-116F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11253-116F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateEpithelialCellsPolarizedDonor1_CNhs10882_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsPolarizedDonor1_CNhs10882_tpm_rev ProstateEpithelialCellsD1- bigWig Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_reverse 1 2746 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%20%28polarized%29%2c%20donor1.CNhs10882.11253-116F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11253-116F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateEpithelialCellsPolarizedDonor1_CNhs10882_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsPolarizedDonor1_CNhs10882_ctss_rev ProstateEpithelialCellsD1- bigWig Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_reverse 0 2746 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%20%28polarized%29%2c%20donor1.CNhs10882.11253-116F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11253-116F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateEpithelialCellsPolarizedDonor1_CNhs10882_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsDonor2_CNhs11972_tpm_fwd ProstateEpithelialCellsD2+ bigWig Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_forward 1 2747 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%2c%20donor2.CNhs11972.11331-117E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11331-117E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateEpithelialCellsDonor2_CNhs11972_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsDonor2_CNhs11972_ctss_fwd ProstateEpithelialCellsD2+ bigWig Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_forward 0 2747 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%2c%20donor2.CNhs11972.11331-117E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11331-117E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateEpithelialCellsDonor2_CNhs11972_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsDonor2_CNhs11972_tpm_rev ProstateEpithelialCellsD2- bigWig Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_reverse 1 2748 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%2c%20donor2.CNhs11972.11331-117E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11331-117E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateEpithelialCellsDonor2_CNhs11972_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsDonor2_CNhs11972_ctss_rev ProstateEpithelialCellsD2- bigWig Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_reverse 0 2748 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%2c%20donor2.CNhs11972.11331-117E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11331-117E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateEpithelialCellsDonor2_CNhs11972_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsDonor3_CNhs12014_tpm_fwd ProstateEpithelialCellsD3+ bigWig Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_forward 1 2749 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%2c%20donor3.CNhs12014.11404-118D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11404-118D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateEpithelialCellsDonor3_CNhs12014_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsDonor3_CNhs12014_ctss_fwd ProstateEpithelialCellsD3+ bigWig Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_forward 0 2749 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%2c%20donor3.CNhs12014.11404-118D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11404-118D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateEpithelialCellsDonor3_CNhs12014_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsDonor3_CNhs12014_tpm_rev ProstateEpithelialCellsD3- bigWig Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_reverse 1 2750 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%2c%20donor3.CNhs12014.11404-118D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11404-118D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateEpithelialCellsDonor3_CNhs12014_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsDonor3_CNhs12014_ctss_rev ProstateEpithelialCellsD3- bigWig Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_reverse 0 2750 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%2c%20donor3.CNhs12014.11404-118D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11404-118D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateEpithelialCellsDonor3_CNhs12014_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor1_CNhs10883_tpm_fwd ProstateStromalCellsD1+ bigWig Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_forward 1 2751 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor1.CNhs10883.11254-116F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11254-116F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateStromalCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateStromalCellsDonor1_CNhs10883_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor1_CNhs10883_ctss_fwd ProstateStromalCellsD1+ bigWig Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_forward 0 2751 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor1.CNhs10883.11254-116F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11254-116F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateStromalCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateStromalCellsDonor1_CNhs10883_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor1_CNhs10883_tpm_rev ProstateStromalCellsD1- bigWig Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_reverse 1 2752 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor1.CNhs10883.11254-116F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11254-116F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateStromalCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateStromalCellsDonor1_CNhs10883_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor1_CNhs10883_ctss_rev ProstateStromalCellsD1- bigWig Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_reverse 0 2752 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor1.CNhs10883.11254-116F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11254-116F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateStromalCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateStromalCellsDonor1_CNhs10883_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor2_CNhs11973_tpm_fwd ProstateStromalCellsD2+ bigWig Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_forward 1 2753 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor2.CNhs11973.11332-117E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11332-117E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateStromalCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateStromalCellsDonor2_CNhs11973_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor2_CNhs11973_ctss_fwd ProstateStromalCellsD2+ bigWig Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_forward 0 2753 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor2.CNhs11973.11332-117E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11332-117E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateStromalCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateStromalCellsDonor2_CNhs11973_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor2_CNhs11973_tpm_rev ProstateStromalCellsD2- bigWig Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_reverse 1 2754 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor2.CNhs11973.11332-117E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11332-117E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateStromalCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateStromalCellsDonor2_CNhs11973_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor2_CNhs11973_ctss_rev ProstateStromalCellsD2- bigWig Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_reverse 0 2754 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor2.CNhs11973.11332-117E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11332-117E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateStromalCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateStromalCellsDonor2_CNhs11973_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor3_CNhs12015_tpm_fwd ProstateStromalCellsD3+ bigWig Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_forward 1 2755 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor3.CNhs12015.11405-118E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11405-118E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateStromalCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateStromalCellsDonor3_CNhs12015_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor3_CNhs12015_ctss_fwd ProstateStromalCellsD3+ bigWig Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_forward 0 2755 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor3.CNhs12015.11405-118E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11405-118E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateStromalCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateStromalCellsDonor3_CNhs12015_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor3_CNhs12015_tpm_rev ProstateStromalCellsD3- bigWig Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_reverse 1 2756 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor3.CNhs12015.11405-118E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11405-118E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateStromalCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateStromalCellsDonor3_CNhs12015_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor3_CNhs12015_ctss_rev ProstateStromalCellsD3- bigWig Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_reverse 0 2756 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor3.CNhs12015.11405-118E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11405-118E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateStromalCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateStromalCellsDonor3_CNhs12015_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1\ urlLabel FANTOM5 Details:\ RenalCorticalEpithelialCellsDonor1_CNhs11331_tpm_fwd RcecD1+ bigWig Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_forward 1 2757 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor1.CNhs11331.11516-119H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11516-119H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RcecD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalCorticalEpithelialCellsDonor1_CNhs11331_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4\ urlLabel FANTOM5 Details:\ RenalCorticalEpithelialCellsDonor1_CNhs11331_ctss_fwd RcecD1+ bigWig Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_forward 0 2757 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor1.CNhs11331.11516-119H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11516-119H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RcecD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalCorticalEpithelialCellsDonor1_CNhs11331_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4\ urlLabel FANTOM5 Details:\ RenalCorticalEpithelialCellsDonor1_CNhs11331_tpm_rev RcecD1- bigWig Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_reverse 1 2758 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor1.CNhs11331.11516-119H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11516-119H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RcecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalCorticalEpithelialCellsDonor1_CNhs11331_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4\ urlLabel FANTOM5 Details:\ RenalCorticalEpithelialCellsDonor1_CNhs11331_ctss_rev RcecD1- bigWig Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_reverse 0 2758 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor1.CNhs11331.11516-119H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11516-119H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RcecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalCorticalEpithelialCellsDonor1_CNhs11331_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4\ urlLabel FANTOM5 Details:\ RenalCorticalEpithelialCellsDonor2_CNhs12728_tpm_fwd RcecD2+ bigWig Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_forward 1 2759 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor2.CNhs12728.11596-120H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11596-120H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RcecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalCorticalEpithelialCellsDonor2_CNhs12728_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3\ urlLabel FANTOM5 Details:\ RenalCorticalEpithelialCellsDonor2_CNhs12728_ctss_fwd RcecD2+ bigWig Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_forward 0 2759 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor2.CNhs12728.11596-120H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11596-120H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RcecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalCorticalEpithelialCellsDonor2_CNhs12728_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3\ urlLabel FANTOM5 Details:\ RenalCorticalEpithelialCellsDonor2_CNhs12728_tpm_rev RcecD2- bigWig Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_reverse 1 2760 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor2.CNhs12728.11596-120H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11596-120H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RcecD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalCorticalEpithelialCellsDonor2_CNhs12728_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3\ urlLabel FANTOM5 Details:\ RenalCorticalEpithelialCellsDonor2_CNhs12728_ctss_rev RcecD2- bigWig Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_reverse 0 2760 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor2.CNhs12728.11596-120H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11596-120H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RcecD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalCorticalEpithelialCellsDonor2_CNhs12728_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor1_CNhs11332_tpm_fwd RenalEpithelialCellsD1+ bigWig Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_forward 1 2761 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor1.CNhs11332.11517-119H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11517-119H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RenalEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalEpithelialCellsDonor1_CNhs11332_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor1_CNhs11332_ctss_fwd RenalEpithelialCellsD1+ bigWig Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_forward 0 2761 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor1.CNhs11332.11517-119H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11517-119H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RenalEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalEpithelialCellsDonor1_CNhs11332_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor1_CNhs11332_tpm_rev RenalEpithelialCellsD1- bigWig Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_reverse 1 2762 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor1.CNhs11332.11517-119H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11517-119H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RenalEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalEpithelialCellsDonor1_CNhs11332_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor1_CNhs11332_ctss_rev RenalEpithelialCellsD1- bigWig Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_reverse 0 2762 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor1.CNhs11332.11517-119H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11517-119H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RenalEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalEpithelialCellsDonor1_CNhs11332_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor2_CNhs12088_tpm_fwd RenalEpithelialCellsD2+ bigWig Renal Epithelial Cells, donor2_CNhs12088_11597-120H4_forward 1 2763 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11597-120H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor2.CNhs12088.11597-120H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Epithelial Cells, donor2_CNhs12088_11597-120H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11597-120H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RenalEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalEpithelialCellsDonor2_CNhs12088_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11597-120H4\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor2_CNhs12088_ctss_fwd RenalEpithelialCellsD2+ bigWig Renal Epithelial Cells, donor2_CNhs12088_11597-120H4_forward 0 2763 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11597-120H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor2.CNhs12088.11597-120H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Epithelial Cells, donor2_CNhs12088_11597-120H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11597-120H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RenalEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalEpithelialCellsDonor2_CNhs12088_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11597-120H4\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor2_CNhs12088_tpm_rev RenalEpithelialCellsD2- bigWig Renal Epithelial Cells, donor2_CNhs12088_11597-120H4_reverse 1 2764 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11597-120H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor2.CNhs12088.11597-120H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Epithelial Cells, donor2_CNhs12088_11597-120H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11597-120H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RenalEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalEpithelialCellsDonor2_CNhs12088_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11597-120H4\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor2_CNhs12088_ctss_rev RenalEpithelialCellsD2- bigWig Renal Epithelial Cells, donor2_CNhs12088_11597-120H4_reverse 0 2764 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11597-120H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor2.CNhs12088.11597-120H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Epithelial Cells, donor2_CNhs12088_11597-120H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11597-120H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RenalEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalEpithelialCellsDonor2_CNhs12088_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11597-120H4\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor3_CNhs12732_tpm_fwd RenalEpithelialCellsD3+ bigWig Renal Epithelial Cells, donor3_CNhs12732_11678-122H4_forward 1 2765 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11678-122H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor3.CNhs12732.11678-122H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Epithelial Cells, donor3_CNhs12732_11678-122H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11678-122H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RenalEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalEpithelialCellsDonor3_CNhs12732_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11678-122H4\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor3_CNhs12732_ctss_fwd RenalEpithelialCellsD3+ bigWig Renal Epithelial Cells, donor3_CNhs12732_11678-122H4_forward 0 2765 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11678-122H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor3.CNhs12732.11678-122H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Epithelial Cells, donor3_CNhs12732_11678-122H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11678-122H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RenalEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalEpithelialCellsDonor3_CNhs12732_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11678-122H4\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor3_CNhs12732_tpm_rev RenalEpithelialCellsD3- bigWig Renal Epithelial Cells, donor3_CNhs12732_11678-122H4_reverse 1 2766 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11678-122H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor3.CNhs12732.11678-122H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Epithelial Cells, donor3_CNhs12732_11678-122H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11678-122H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RenalEpithelialCellsD3-\ subGroups 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sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalGlomerularEndothelialCellsDonor4_CNhs13080_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor4_CNhs13080_tpm_rev RgecD4- bigWig Renal Glomerular Endothelial Cells, donor4_CNhs13080_11783-124B1_reverse 1 2780 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor4.CNhs13080.11783-124B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Glomerular Endothelial Cells, donor4_CNhs13080_11783-124B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11783-124B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RgecD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalGlomerularEndothelialCellsDonor4_CNhs13080_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor4_CNhs13080_ctss_rev RgecD4- bigWig Renal Glomerular Endothelial Cells, donor4_CNhs13080_11783-124B1_reverse 0 2780 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor4.CNhs13080.11783-124B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Glomerular Endothelial Cells, donor4_CNhs13080_11783-124B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11783-124B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RgecD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalGlomerularEndothelialCellsDonor4_CNhs13080_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor0_CNhs10842_tpm_fwd RpecD0+ bigWig Retinal Pigment Epithelial Cells, donor0_CNhs10842_11215-116A9_forward 1 2781 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11215-116A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor0.CNhs10842.11215-116A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor0_CNhs10842_11215-116A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11215-116A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor0_CNhs10842_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11215-116A9\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor0_CNhs10842_ctss_fwd RpecD0+ bigWig Retinal Pigment Epithelial Cells, donor0_CNhs10842_11215-116A9_forward 0 2781 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11215-116A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor0.CNhs10842.11215-116A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor0_CNhs10842_11215-116A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11215-116A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor0_CNhs10842_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11215-116A9\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor0_CNhs10842_tpm_rev RpecD0- bigWig Retinal Pigment Epithelial Cells, donor0_CNhs10842_11215-116A9_reverse 1 2782 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11215-116A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor0.CNhs10842.11215-116A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, 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sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor0_CNhs10842_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11215-116A9\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor1_CNhs11338_tpm_fwd RpecD1+ bigWig Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_forward 1 2783 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs11338.11528-119I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11528-119I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor1_CNhs11338_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor1_CNhs11338_ctss_fwd RpecD1+ bigWig Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_forward 0 2783 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs11338.11528-119I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11528-119I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor1_CNhs11338_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor1_CNhs11338_tpm_rev RpecD1- bigWig Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_reverse 1 2784 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs11338.11528-119I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11528-119I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor1_CNhs11338_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor1_CNhs11338_ctss_rev RpecD1- bigWig Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_reverse 0 2784 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs11338.11528-119I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11528-119I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor1_CNhs11338_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor2_CNhs12096_tpm_fwd RpecD2+ bigWig Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_forward 1 2785 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor2.CNhs12096.11608-120I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11608-120I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor2_CNhs12096_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor2_CNhs12096_ctss_fwd RpecD2+ bigWig Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_forward 0 2785 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor2.CNhs12096.11608-120I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11608-120I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor2_CNhs12096_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor2_CNhs12096_tpm_rev RpecD2- bigWig Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_reverse 1 2786 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor2.CNhs12096.11608-120I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11608-120I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor2_CNhs12096_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor2_CNhs12096_ctss_rev RpecD2- bigWig Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_reverse 0 2786 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor2.CNhs12096.11608-120I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11608-120I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor2_CNhs12096_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor3_CNhs12733_tpm_fwd RpecD3+ bigWig Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_forward 1 2787 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor3.CNhs12733.11689-122I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11689-122I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor3_CNhs12733_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor3_CNhs12733_ctss_fwd RpecD3+ bigWig Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_forward 0 2787 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor3.CNhs12733.11689-122I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11689-122I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor3_CNhs12733_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor3_CNhs12733_tpm_rev RpecD3- bigWig Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_reverse 1 2788 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor3.CNhs12733.11689-122I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11689-122I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor3_CNhs12733_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor3_CNhs12733_ctss_rev RpecD3- bigWig Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_reverse 0 2788 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor3.CNhs12733.11689-122I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11689-122I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor3_CNhs12733_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor1_CNhs11330_tpm_fwd RptecD1+ bigWig Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_forward 1 2789 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor1.CNhs11330.11515-119H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11515-119H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RptecD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalProximalTubularEpithelialCellDonor1_CNhs11330_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor1_CNhs11330_ctss_fwd RptecD1+ bigWig Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_forward 0 2789 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor1.CNhs11330.11515-119H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11515-119H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RptecD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalProximalTubularEpithelialCellDonor1_CNhs11330_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor1_CNhs11330_tpm_rev RptecD1- bigWig Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_reverse 1 2790 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor1.CNhs11330.11515-119H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11515-119H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RptecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalProximalTubularEpithelialCellDonor1_CNhs11330_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor1_CNhs11330_ctss_rev RptecD1- bigWig Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_reverse 0 2790 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor1.CNhs11330.11515-119H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11515-119H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RptecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalProximalTubularEpithelialCellDonor1_CNhs11330_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor2_CNhs12087_tpm_fwd RptecD2+ bigWig Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_forward 1 2791 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor2.CNhs12087.11595-120H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11595-120H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RptecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalProximalTubularEpithelialCellDonor2_CNhs12087_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor2_CNhs12087_ctss_fwd RptecD2+ bigWig Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_forward 0 2791 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor2.CNhs12087.11595-120H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11595-120H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RptecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalProximalTubularEpithelialCellDonor2_CNhs12087_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor2_CNhs12087_tpm_rev RptecD2- bigWig Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_reverse 1 2792 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor2.CNhs12087.11595-120H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11595-120H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RptecD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalProximalTubularEpithelialCellDonor2_CNhs12087_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor2_CNhs12087_ctss_rev RptecD2- bigWig Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_reverse 0 2792 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor2.CNhs12087.11595-120H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11595-120H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RptecD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalProximalTubularEpithelialCellDonor2_CNhs12087_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor3_CNhs12120_tpm_fwd RptecD3+ bigWig Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_forward 1 2793 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor3.CNhs12120.11676-122H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11676-122H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RptecD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalProximalTubularEpithelialCellDonor3_CNhs12120_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor3_CNhs12120_ctss_fwd RptecD3+ bigWig Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_forward 0 2793 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor3.CNhs12120.11676-122H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11676-122H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RptecD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalProximalTubularEpithelialCellDonor3_CNhs12120_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor3_CNhs12120_tpm_rev RptecD3- bigWig Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_reverse 1 2794 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor3.CNhs12120.11676-122H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11676-122H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RptecD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalProximalTubularEpithelialCellDonor3_CNhs12120_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor3_CNhs12120_ctss_rev RptecD3- bigWig Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_reverse 0 2794 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor3.CNhs12120.11676-122H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11676-122H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RptecD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalProximalTubularEpithelialCellDonor3_CNhs12120_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor1_CNhs12810_tpm_fwd SalivaryAcinarCellsD1+ bigWig salivary acinar cells, donor1_CNhs12810_11771-123I7_forward 1 2795 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor1.CNhs12810.11771-123I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel salivary acinar cells, donor1_CNhs12810_11771-123I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11771-123I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryAcinarCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SalivaryAcinarCellsDonor1_CNhs12810_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor1_CNhs12810_ctss_fwd SalivaryAcinarCellsD1+ bigWig salivary acinar cells, donor1_CNhs12810_11771-123I7_forward 0 2795 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor1.CNhs12810.11771-123I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel salivary acinar cells, donor1_CNhs12810_11771-123I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11771-123I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryAcinarCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SalivaryAcinarCellsDonor1_CNhs12810_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor1_CNhs12810_tpm_rev SalivaryAcinarCellsD1- bigWig salivary acinar cells, donor1_CNhs12810_11771-123I7_reverse 1 2796 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor1.CNhs12810.11771-123I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel salivary acinar cells, donor1_CNhs12810_11771-123I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11771-123I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryAcinarCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SalivaryAcinarCellsDonor1_CNhs12810_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor1_CNhs12810_ctss_rev SalivaryAcinarCellsD1- bigWig salivary acinar cells, donor1_CNhs12810_11771-123I7_reverse 0 2796 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor1.CNhs12810.11771-123I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel salivary acinar cells, donor1_CNhs12810_11771-123I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11771-123I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryAcinarCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SalivaryAcinarCellsDonor1_CNhs12810_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor2_CNhs12811_tpm_fwd SalivaryAcinarCellsD2+ bigWig salivary acinar cells, donor2_CNhs12811_11772-123I8_forward 1 2797 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor2.CNhs12811.11772-123I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel salivary acinar cells, donor2_CNhs12811_11772-123I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11772-123I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryAcinarCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SalivaryAcinarCellsDonor2_CNhs12811_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor2_CNhs12811_ctss_fwd SalivaryAcinarCellsD2+ bigWig salivary acinar cells, donor2_CNhs12811_11772-123I8_forward 0 2797 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor2.CNhs12811.11772-123I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel salivary acinar cells, donor2_CNhs12811_11772-123I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11772-123I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryAcinarCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SalivaryAcinarCellsDonor2_CNhs12811_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor2_CNhs12811_tpm_rev SalivaryAcinarCellsD2- bigWig salivary acinar cells, donor2_CNhs12811_11772-123I8_reverse 1 2798 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor2.CNhs12811.11772-123I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel salivary acinar cells, donor2_CNhs12811_11772-123I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11772-123I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryAcinarCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SalivaryAcinarCellsDonor2_CNhs12811_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor2_CNhs12811_ctss_rev SalivaryAcinarCellsD2- bigWig salivary acinar cells, donor2_CNhs12811_11772-123I8_reverse 0 2798 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor2.CNhs12811.11772-123I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel salivary acinar cells, donor2_CNhs12811_11772-123I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11772-123I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryAcinarCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SalivaryAcinarCellsDonor2_CNhs12811_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor3_CNhs12812_tpm_fwd SalivaryAcinarCellsD3+ bigWig salivary acinar cells, donor3_CNhs12812_11773-123I9_forward 1 2799 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor3.CNhs12812.11773-123I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel salivary acinar cells, donor3_CNhs12812_11773-123I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11773-123I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryAcinarCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SalivaryAcinarCellsDonor3_CNhs12812_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor3_CNhs12812_ctss_fwd SalivaryAcinarCellsD3+ bigWig salivary acinar cells, donor3_CNhs12812_11773-123I9_forward 0 2799 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor3.CNhs12812.11773-123I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel salivary acinar cells, donor3_CNhs12812_11773-123I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11773-123I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryAcinarCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SalivaryAcinarCellsDonor3_CNhs12812_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor3_CNhs12812_tpm_rev SalivaryAcinarCellsD3- bigWig salivary acinar cells, donor3_CNhs12812_11773-123I9_reverse 1 2800 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor3.CNhs12812.11773-123I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel salivary acinar cells, donor3_CNhs12812_11773-123I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11773-123I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryAcinarCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SalivaryAcinarCellsDonor3_CNhs12812_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor3_CNhs12812_ctss_rev SalivaryAcinarCellsD3- bigWig salivary acinar cells, donor3_CNhs12812_11773-123I9_reverse 0 2800 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor3.CNhs12812.11773-123I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel salivary acinar cells, donor3_CNhs12812_11773-123I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11773-123I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryAcinarCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SalivaryAcinarCellsDonor3_CNhs12812_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9\ urlLabel FANTOM5 Details:\ SchwannCellsDonor1_CNhs12073_tpm_fwd SchwannCellsD1+ bigWig Schwann Cells, donor1_CNhs12073_11498-119F4_forward 1 2801 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor1.CNhs12073.11498-119F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Schwann Cells, donor1_CNhs12073_11498-119F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11498-119F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SchwannCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SchwannCellsDonor1_CNhs12073_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4\ urlLabel FANTOM5 Details:\ SchwannCellsDonor1_CNhs12073_ctss_fwd SchwannCellsD1+ bigWig Schwann Cells, donor1_CNhs12073_11498-119F4_forward 0 2801 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor1.CNhs12073.11498-119F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Schwann Cells, donor1_CNhs12073_11498-119F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11498-119F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SchwannCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SchwannCellsDonor1_CNhs12073_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4\ urlLabel FANTOM5 Details:\ SchwannCellsDonor1_CNhs12073_tpm_rev SchwannCellsD1- bigWig Schwann Cells, donor1_CNhs12073_11498-119F4_reverse 1 2802 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor1.CNhs12073.11498-119F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Schwann Cells, donor1_CNhs12073_11498-119F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11498-119F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SchwannCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SchwannCellsDonor1_CNhs12073_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4\ urlLabel FANTOM5 Details:\ SchwannCellsDonor1_CNhs12073_ctss_rev SchwannCellsD1- bigWig Schwann Cells, donor1_CNhs12073_11498-119F4_reverse 0 2802 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor1.CNhs12073.11498-119F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Schwann Cells, donor1_CNhs12073_11498-119F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11498-119F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SchwannCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SchwannCellsDonor1_CNhs12073_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4\ urlLabel FANTOM5 Details:\ SchwannCellsDonor2_CNhs12345_tpm_fwd SchwannCellsD2+ bigWig Schwann Cells, donor2_CNhs12345_11578-120F3_forward 1 2803 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor2.CNhs12345.11578-120F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Schwann Cells, donor2_CNhs12345_11578-120F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11578-120F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SchwannCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SchwannCellsDonor2_CNhs12345_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3\ urlLabel FANTOM5 Details:\ SchwannCellsDonor2_CNhs12345_ctss_fwd SchwannCellsD2+ bigWig Schwann Cells, donor2_CNhs12345_11578-120F3_forward 0 2803 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor2.CNhs12345.11578-120F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Schwann Cells, donor2_CNhs12345_11578-120F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11578-120F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SchwannCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SchwannCellsDonor2_CNhs12345_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3\ urlLabel FANTOM5 Details:\ SchwannCellsDonor2_CNhs12345_tpm_rev SchwannCellsD2- bigWig Schwann Cells, donor2_CNhs12345_11578-120F3_reverse 1 2804 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor2.CNhs12345.11578-120F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Schwann Cells, donor2_CNhs12345_11578-120F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11578-120F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SchwannCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SchwannCellsDonor2_CNhs12345_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3\ urlLabel FANTOM5 Details:\ SchwannCellsDonor2_CNhs12345_ctss_rev SchwannCellsD2- bigWig Schwann Cells, donor2_CNhs12345_11578-120F3_reverse 0 2804 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor2.CNhs12345.11578-120F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Schwann Cells, donor2_CNhs12345_11578-120F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11578-120F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SchwannCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SchwannCellsDonor2_CNhs12345_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3\ urlLabel FANTOM5 Details:\ SchwannCellsDonor3_CNhs12621_tpm_fwd SchwannCellsD3+ bigWig Schwann Cells, donor3_CNhs12621_11659-122F3_forward 1 2805 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor3.CNhs12621.11659-122F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Schwann Cells, donor3_CNhs12621_11659-122F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11659-122F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SchwannCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SchwannCellsDonor3_CNhs12621_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3\ urlLabel FANTOM5 Details:\ SchwannCellsDonor3_CNhs12621_ctss_fwd SchwannCellsD3+ bigWig Schwann Cells, donor3_CNhs12621_11659-122F3_forward 0 2805 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor3.CNhs12621.11659-122F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Schwann Cells, donor3_CNhs12621_11659-122F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11659-122F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SchwannCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SchwannCellsDonor3_CNhs12621_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3\ urlLabel FANTOM5 Details:\ SchwannCellsDonor3_CNhs12621_tpm_rev SchwannCellsD3- bigWig Schwann Cells, donor3_CNhs12621_11659-122F3_reverse 1 2806 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor3.CNhs12621.11659-122F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Schwann Cells, donor3_CNhs12621_11659-122F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11659-122F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SchwannCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SchwannCellsDonor3_CNhs12621_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3\ urlLabel FANTOM5 Details:\ SchwannCellsDonor3_CNhs12621_ctss_rev SchwannCellsD3- bigWig Schwann Cells, donor3_CNhs12621_11659-122F3_reverse 0 2806 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor3.CNhs12621.11659-122F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Schwann Cells, donor3_CNhs12621_11659-122F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11659-122F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SchwannCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SchwannCellsDonor3_CNhs12621_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3\ urlLabel FANTOM5 Details:\ SebocyteDonor1_CNhs10847_tpm_fwd SebocyteD1+ bigWig Sebocyte, donor1_CNhs10847_11220-116B5_forward 1 2807 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor1.CNhs10847.11220-116B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Sebocyte, donor1_CNhs10847_11220-116B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11220-116B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SebocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SebocyteDonor1_CNhs10847_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5\ urlLabel FANTOM5 Details:\ SebocyteDonor1_CNhs10847_ctss_fwd SebocyteD1+ bigWig Sebocyte, donor1_CNhs10847_11220-116B5_forward 0 2807 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor1.CNhs10847.11220-116B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Sebocyte, donor1_CNhs10847_11220-116B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11220-116B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SebocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SebocyteDonor1_CNhs10847_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5\ urlLabel FANTOM5 Details:\ SebocyteDonor1_CNhs10847_tpm_rev SebocyteD1- bigWig Sebocyte, donor1_CNhs10847_11220-116B5_reverse 1 2808 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor1.CNhs10847.11220-116B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Sebocyte, donor1_CNhs10847_11220-116B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11220-116B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SebocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SebocyteDonor1_CNhs10847_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5\ urlLabel FANTOM5 Details:\ SebocyteDonor1_CNhs10847_ctss_rev SebocyteD1- bigWig Sebocyte, donor1_CNhs10847_11220-116B5_reverse 0 2808 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor1.CNhs10847.11220-116B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Sebocyte, donor1_CNhs10847_11220-116B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11220-116B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SebocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SebocyteDonor1_CNhs10847_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5\ urlLabel FANTOM5 Details:\ SebocyteDonor2_CNhs11951_tpm_fwd SebocyteD2+ bigWig Sebocyte, donor2_CNhs11951_11301-117B5_forward 1 2809 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor2.CNhs11951.11301-117B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Sebocyte, donor2_CNhs11951_11301-117B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11301-117B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SebocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SebocyteDonor2_CNhs11951_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5\ urlLabel FANTOM5 Details:\ SebocyteDonor2_CNhs11951_ctss_fwd SebocyteD2+ bigWig Sebocyte, donor2_CNhs11951_11301-117B5_forward 0 2809 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor2.CNhs11951.11301-117B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Sebocyte, donor2_CNhs11951_11301-117B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11301-117B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SebocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SebocyteDonor2_CNhs11951_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5\ urlLabel FANTOM5 Details:\ SebocyteDonor2_CNhs11951_tpm_rev SebocyteD2- bigWig Sebocyte, donor2_CNhs11951_11301-117B5_reverse 1 2810 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor2.CNhs11951.11301-117B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Sebocyte, donor2_CNhs11951_11301-117B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11301-117B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SebocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SebocyteDonor2_CNhs11951_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5\ urlLabel FANTOM5 Details:\ SebocyteDonor2_CNhs11951_ctss_rev SebocyteD2- bigWig Sebocyte, donor2_CNhs11951_11301-117B5_reverse 0 2810 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor2.CNhs11951.11301-117B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Sebocyte, donor2_CNhs11951_11301-117B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11301-117B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SebocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SebocyteDonor2_CNhs11951_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5\ urlLabel FANTOM5 Details:\ SebocyteDonor3_CNhs11995_tpm_fwd SebocyteD3+ bigWig Sebocyte, donor3_CNhs11995_11378-118B1_forward 1 2811 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor3.CNhs11995.11378-118B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Sebocyte, donor3_CNhs11995_11378-118B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11378-118B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SebocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SebocyteDonor3_CNhs11995_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1\ urlLabel FANTOM5 Details:\ SebocyteDonor3_CNhs11995_ctss_fwd SebocyteD3+ bigWig Sebocyte, donor3_CNhs11995_11378-118B1_forward 0 2811 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor3.CNhs11995.11378-118B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Sebocyte, donor3_CNhs11995_11378-118B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11378-118B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SebocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SebocyteDonor3_CNhs11995_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1\ urlLabel FANTOM5 Details:\ SebocyteDonor3_CNhs11995_tpm_rev SebocyteD3- bigWig Sebocyte, donor3_CNhs11995_11378-118B1_reverse 1 2812 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor3.CNhs11995.11378-118B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Sebocyte, donor3_CNhs11995_11378-118B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11378-118B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SebocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SebocyteDonor3_CNhs11995_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1\ urlLabel FANTOM5 Details:\ SebocyteDonor3_CNhs11995_ctss_rev SebocyteD3- bigWig Sebocyte, donor3_CNhs11995_11378-118B1_reverse 0 2812 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor3.CNhs11995.11378-118B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Sebocyte, donor3_CNhs11995_11378-118B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11378-118B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SebocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SebocyteDonor3_CNhs11995_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1\ urlLabel FANTOM5 Details:\ SertoliCellsDonor1_CNhs10851_tpm_fwd SertoliCellsD1+ bigWig Sertoli Cells, donor1_CNhs10851_11255-116F4_forward 1 2813 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11255-116F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sertoli%20Cells%2c%20donor1.CNhs10851.11255-116F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Sertoli Cells, donor1_CNhs10851_11255-116F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11255-116F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SertoliCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SertoliCellsDonor1_CNhs10851_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11255-116F4\ urlLabel FANTOM5 Details:\ SertoliCellsDonor1_CNhs10851_ctss_fwd SertoliCellsD1+ bigWig Sertoli Cells, donor1_CNhs10851_11255-116F4_forward 0 2813 255 0 0 255 127 127 0 0 0 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track SkeletalMuscleCellsDonor1_CNhs11083_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11281-116I3\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor2_CNhs11983_tpm_fwd SkeletalMuscleCellsD2+ bigWig Skeletal Muscle Cells, donor2_CNhs11983_11358-117H8_forward 1 2819 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11358-117H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor2.CNhs11983.11358-117H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor2_CNhs11983_11358-117H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11358-117H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor2_CNhs11983_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11358-117H8\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor2_CNhs11983_ctss_fwd SkeletalMuscleCellsD2+ bigWig Skeletal Muscle Cells, donor2_CNhs11983_11358-117H8_forward 0 2819 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11358-117H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor2.CNhs11983.11358-117H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor2_CNhs11983_11358-117H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11358-117H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor2_CNhs11983_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11358-117H8\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor2_CNhs11983_tpm_rev SkeletalMuscleCellsD2- bigWig Skeletal Muscle Cells, donor2_CNhs11983_11358-117H8_reverse 1 2820 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11358-117H8 regulation 0 bigDataUrl 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ontology_id=11358-117H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDonor2_CNhs11983_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11358-117H8\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor3_CNhs12040_tpm_fwd SkeletalMuscleCellsD3+ bigWig Skeletal Muscle Cells, donor3_CNhs12040_11430-118G8_forward 1 2821 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11430-118G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor3.CNhs12040.11430-118G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor3_CNhs12040_11430-118G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11430-118G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor3_CNhs12040_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11430-118G8\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor3_CNhs12040_ctss_fwd SkeletalMuscleCellsD3+ bigWig Skeletal Muscle Cells, donor3_CNhs12040_11430-118G8_forward 0 2821 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11430-118G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor3.CNhs12040.11430-118G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor3_CNhs12040_11430-118G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11430-118G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor3_CNhs12040_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11430-118G8\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor3_CNhs12040_tpm_rev SkeletalMuscleCellsD3- bigWig Skeletal Muscle Cells, donor3_CNhs12040_11430-118G8_reverse 1 2822 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11430-118G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor3.CNhs12040.11430-118G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Cells, donor3_CNhs12040_11430-118G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11430-118G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDonor3_CNhs12040_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11430-118G8\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor3_CNhs12040_ctss_rev SkeletalMuscleCellsD3- bigWig Skeletal Muscle Cells, donor3_CNhs12040_11430-118G8_reverse 0 2822 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11430-118G8 regulation 0 bigDataUrl 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urlLabel FANTOM5 Details:\ SmoothMuscleCellsAorticDonor3_CNhs11309_ctss_fwd SmcAorticCytofracD3+ bigWig Smooth Muscle Cells - Aortic, donor3_CNhs11309_11432-118H1_forward 0 2873 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11432-118H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor3.CNhs11309.11432-118H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Aortic, donor3_CNhs11309_11432-118H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11432-118H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAorticCytofracD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAorticDonor3_CNhs11309_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11432-118H1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAorticDonor3_CNhs11309_tpm_rev SmcAorticCytofracD3- bigWig Smooth Muscle Cells - Aortic, donor3_CNhs11309_11432-118H1_reverse 1 2874 0 0 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Details:\ SmoothMuscleCellsBladderDonor1_CNhs12893_ctss_rev SmcBladderD1- bigWig Smooth Muscle Cells - Bladder, donor1_CNhs12893_11519-119H7_reverse 0 2876 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11519-119H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Bladder%2c%20donor1.CNhs12893.11519-119H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Bladder, donor1_CNhs12893_11519-119H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11519-119H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcBladderD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsBladderDonor1_CNhs12893_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11519-119H7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsBrachiocephalicDonor1_CNhs11086_tpm_fwd SmcBrachiocephalicD1+ bigWig Smooth Muscle Cells - Brachiocephalic, donor1_CNhs11086_11284-116I6_forward 1 2877 255 0 0 255 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bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Pulmonary%20Artery%2c%20donor3.CNhs12047.11437-118H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Pulmonary Artery, donor3_CNhs12047_11437-118H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11437-118H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcPulmonaryArteryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsPulmonaryArteryDonor3_CNhs12047_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11437-118H6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsPulmonaryArteryDonor3_CNhs12047_tpm_rev SmcPulmonaryArteryD3- bigWig Smooth Muscle Cells - Pulmonary Artery, donor3_CNhs12047_11437-118H6_reverse 1 2934 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11437-118H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Pulmonary%20Artery%2c%20donor3.CNhs12047.11437-118H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Pulmonary Artery, donor3_CNhs12047_11437-118H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11437-118H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcPulmonaryArteryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsPulmonaryArteryDonor3_CNhs12047_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11437-118H6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsPulmonaryArteryDonor3_CNhs12047_ctss_rev SmcPulmonaryArteryD3- bigWig Smooth Muscle Cells - Pulmonary Artery, donor3_CNhs12047_11437-118H6_reverse 0 2934 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11437-118H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Pulmonary%20Artery%2c%20donor3.CNhs12047.11437-118H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Pulmonary Artery, donor3_CNhs12047_11437-118H6_reverse\ maxHeightPixels 100:8:8\ metadata 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SmoothMuscleCellsSubclavianArteryDonor1_CNhs11090_ctss_rev SmcSubclavianArteryD1- bigWig Smooth Muscle Cells - Subclavian Artery, donor1_CNhs11090_11289-117A2_reverse 0 2936 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11289-117A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Subclavian%20Artery%2c%20donor1.CNhs11090.11289-117A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Subclavian Artery, donor1_CNhs11090_11289-117A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11289-117A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcSubclavianArteryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsSubclavianArteryDonor1_CNhs11090_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11289-117A2\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsSubclavianArteryDonor2_CNhs11990_tpm_fwd SmcSubclavianArteryD2+ bigWig Smooth Muscle Cells - Subclavian 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regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Subclavian%20Artery%2c%20donor2.CNhs11990.11366-117I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Subclavian Artery, donor2_CNhs11990_11366-117I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11366-117I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcSubclavianArteryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsSubclavianArteryDonor2_CNhs11990_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11366-117I7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsSubclavianArteryDonor2_CNhs11990_tpm_rev SmcSubclavianArteryD2- bigWig Smooth Muscle Cells - Subclavian Artery, donor2_CNhs11990_11366-117I7_reverse 1 2938 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11366-117I7 regulation 0 bigDataUrl 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type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11438-118H7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsSubclavianArteryDonor3_CNhs12048_ctss_rev SmcSubclavianArteryD3- bigWig Smooth Muscle Cells - Subclavian Artery, donor3_CNhs12048_11438-118H7_reverse 0 2940 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11438-118H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Subclavian%20Artery%2c%20donor3.CNhs12048.11438-118H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Subclavian Artery, donor3_CNhs12048_11438-118H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11438-118H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcSubclavianArteryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsSubclavianArteryDonor3_CNhs12048_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11438-118H7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsTrachealDonor1_CNhs11329_tpm_fwd SmcTrachealD1+ bigWig Smooth Muscle Cells - Tracheal, donor1_CNhs11329_11513-119H1_forward 1 2941 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11513-119H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Tracheal%2c%20donor1.CNhs11329.11513-119H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Tracheal, donor1_CNhs11329_11513-119H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11513-119H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcTrachealD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsTrachealDonor1_CNhs11329_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11513-119H1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsTrachealDonor1_CNhs11329_ctss_fwd SmcTrachealD1+ bigWig Smooth Muscle Cells - Tracheal, donor1_CNhs11329_11513-119H1_forward 0 2941 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11513-119H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Tracheal%2c%20donor1.CNhs11329.11513-119H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Tracheal, donor1_CNhs11329_11513-119H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11513-119H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcTrachealD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsTrachealDonor1_CNhs11329_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11513-119H1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsTrachealDonor1_CNhs11329_tpm_rev SmcTrachealD1- bigWig Smooth Muscle Cells - Tracheal, donor1_CNhs11329_11513-119H1_reverse 1 2942 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11513-119H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Tracheal%2c%20donor1.CNhs11329.11513-119H1.hg38.tpm.rev.bw\ 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url http://fantom.gsc.riken.jp/5/sstar/FF:11593-120G9\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsTrachealDonor2_CNhs12567_ctss_fwd SmcTrachealD2+ bigWig Smooth Muscle Cells - Tracheal, donor2_CNhs12567_11593-120G9_forward 0 2943 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11593-120G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Tracheal%2c%20donor2.CNhs12567.11593-120G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Tracheal, donor2_CNhs12567_11593-120G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11593-120G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcTrachealD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsTrachealDonor2_CNhs12567_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11593-120G9\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsTrachealDonor2_CNhs12567_tpm_rev SmcTrachealD2- bigWig Smooth Muscle Cells - 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SmoothMuscleCellsUterineDonor1_CNhs11921_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11258-116F7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUterineDonor1_CNhs11921_ctss_fwd SmcUterineD1+ bigWig Smooth Muscle Cells - Uterine, donor1_CNhs11921_11258-116F7_forward 0 2961 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11258-116F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Uterine%2c%20donor1.CNhs11921.11258-116F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Uterine, donor1_CNhs11921_11258-116F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11258-116F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcUterineD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsUterineDonor1_CNhs11921_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11258-116F7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUterineDonor1_CNhs11921_tpm_rev SmcUterineD1- bigWig Smooth Muscle Cells - Uterine, donor1_CNhs11921_11258-116F7_reverse 1 2962 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11258-116F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Uterine%2c%20donor1.CNhs11921.11258-116F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Uterine, donor1_CNhs11921_11258-116F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11258-116F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcUterineD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUterineDonor1_CNhs11921_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11258-116F7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUterineDonor1_CNhs11921_ctss_rev SmcUterineD1- bigWig Smooth Muscle Cells - Uterine, donor1_CNhs11921_11258-116F7_reverse 0 2962 0 0 255 127 127 255 0 0 0 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off\ shortLabel SmcUterineD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsUterineDonor3_CNhs11927_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11466-119B8\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUterineDonor3_CNhs11927_tpm_rev SmcUterineD3- bigWig Smooth Muscle Cells - Uterine, donor3_CNhs11927_11466-119B8_reverse 1 2964 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11466-119B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Uterine%2c%20donor3.CNhs11927.11466-119B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Uterine, donor3_CNhs11927_11466-119B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11466-119B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcUterineD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUterineDonor3_CNhs11927_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11466-119B8\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUterineDonor3_CNhs11927_ctss_rev SmcUterineD3- bigWig Smooth Muscle Cells - Uterine, donor3_CNhs11927_11466-119B8_reverse 0 2964 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11466-119B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Uterine%2c%20donor3.CNhs11927.11466-119B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Uterine, donor3_CNhs11927_11466-119B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11466-119B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcUterineD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUterineDonor3_CNhs11927_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11466-119B8\ urlLabel FANTOM5 Details:\ SynoviocyteDonor1_CNhs11068_tpm_fwd SynoviocyteD1+ bigWig Synoviocyte, donor1_CNhs11068_11291-117A4_forward 1 2965 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11291-117A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor1.CNhs11068.11291-117A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Synoviocyte, donor1_CNhs11068_11291-117A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11291-117A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SynoviocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SynoviocyteDonor1_CNhs11068_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11291-117A4\ urlLabel FANTOM5 Details:\ SynoviocyteDonor1_CNhs11068_ctss_fwd SynoviocyteD1+ bigWig Synoviocyte, donor1_CNhs11068_11291-117A4_forward 0 2965 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11291-117A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor1.CNhs11068.11291-117A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Synoviocyte, donor1_CNhs11068_11291-117A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11291-117A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SynoviocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SynoviocyteDonor1_CNhs11068_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11291-117A4\ urlLabel FANTOM5 Details:\ SynoviocyteDonor1_CNhs11068_tpm_rev SynoviocyteD1- bigWig Synoviocyte, donor1_CNhs11068_11291-117A4_reverse 1 2966 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11291-117A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor1.CNhs11068.11291-117A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Synoviocyte, donor1_CNhs11068_11291-117A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11291-117A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SynoviocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SynoviocyteDonor1_CNhs11068_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11291-117A4\ urlLabel FANTOM5 Details:\ SynoviocyteDonor1_CNhs11068_ctss_rev SynoviocyteD1- bigWig Synoviocyte, donor1_CNhs11068_11291-117A4_reverse 0 2966 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11291-117A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor1.CNhs11068.11291-117A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Synoviocyte, donor1_CNhs11068_11291-117A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11291-117A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SynoviocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SynoviocyteDonor1_CNhs11068_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11291-117A4\ urlLabel FANTOM5 Details:\ SynoviocyteDonor2_CNhs11992_tpm_fwd SynoviocyteD2+ bigWig Synoviocyte, donor2_CNhs11992_11368-117I9_forward 1 2967 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor2.CNhs11992.11368-117I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Synoviocyte, donor2_CNhs11992_11368-117I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11368-117I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SynoviocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SynoviocyteDonor2_CNhs11992_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9\ urlLabel FANTOM5 Details:\ SynoviocyteDonor2_CNhs11992_ctss_fwd SynoviocyteD2+ bigWig Synoviocyte, donor2_CNhs11992_11368-117I9_forward 0 2967 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor2.CNhs11992.11368-117I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Synoviocyte, donor2_CNhs11992_11368-117I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11368-117I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SynoviocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SynoviocyteDonor2_CNhs11992_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9\ urlLabel FANTOM5 Details:\ SynoviocyteDonor2_CNhs11992_tpm_rev SynoviocyteD2- bigWig Synoviocyte, donor2_CNhs11992_11368-117I9_reverse 1 2968 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor2.CNhs11992.11368-117I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Synoviocyte, donor2_CNhs11992_11368-117I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11368-117I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SynoviocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SynoviocyteDonor2_CNhs11992_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9\ urlLabel FANTOM5 Details:\ SynoviocyteDonor2_CNhs11992_ctss_rev SynoviocyteD2- bigWig Synoviocyte, donor2_CNhs11992_11368-117I9_reverse 0 2968 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor2.CNhs11992.11368-117I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Synoviocyte, donor2_CNhs11992_11368-117I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11368-117I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SynoviocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SynoviocyteDonor2_CNhs11992_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9\ urlLabel FANTOM5 Details:\ SynoviocyteDonor3_CNhs12050_tpm_fwd SynoviocyteD3+ bigWig Synoviocyte, donor3_CNhs12050_11440-118H9_forward 1 2969 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor3.CNhs12050.11440-118H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Synoviocyte, donor3_CNhs12050_11440-118H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11440-118H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SynoviocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SynoviocyteDonor3_CNhs12050_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9\ urlLabel FANTOM5 Details:\ SynoviocyteDonor3_CNhs12050_ctss_fwd SynoviocyteD3+ bigWig Synoviocyte, donor3_CNhs12050_11440-118H9_forward 0 2969 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor3.CNhs12050.11440-118H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Synoviocyte, donor3_CNhs12050_11440-118H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11440-118H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SynoviocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SynoviocyteDonor3_CNhs12050_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9\ urlLabel FANTOM5 Details:\ SynoviocyteDonor3_CNhs12050_tpm_rev SynoviocyteD3- bigWig Synoviocyte, donor3_CNhs12050_11440-118H9_reverse 1 2970 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor3.CNhs12050.11440-118H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Synoviocyte, donor3_CNhs12050_11440-118H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11440-118H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SynoviocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SynoviocyteDonor3_CNhs12050_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9\ urlLabel FANTOM5 Details:\ SynoviocyteDonor3_CNhs12050_ctss_rev SynoviocyteD3- bigWig Synoviocyte, donor3_CNhs12050_11440-118H9_reverse 0 2970 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor3.CNhs12050.11440-118H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Synoviocyte, donor3_CNhs12050_11440-118H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11440-118H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SynoviocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SynoviocyteDonor3_CNhs12050_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9\ urlLabel FANTOM5 Details:\ TenocyteDonor1_CNhs12639_tpm_fwd TenocyteD1+ bigWig tenocyte, donor1_CNhs12639_11763-123H8_forward 1 2971 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor1.CNhs12639.11763-123H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel tenocyte, donor1_CNhs12639_11763-123H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11763-123H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TenocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TenocyteDonor1_CNhs12639_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8\ urlLabel FANTOM5 Details:\ TenocyteDonor1_CNhs12639_ctss_fwd TenocyteD1+ bigWig tenocyte, donor1_CNhs12639_11763-123H8_forward 0 2971 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor1.CNhs12639.11763-123H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel tenocyte, donor1_CNhs12639_11763-123H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11763-123H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TenocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TenocyteDonor1_CNhs12639_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8\ urlLabel FANTOM5 Details:\ TenocyteDonor1_CNhs12639_tpm_rev TenocyteD1- bigWig tenocyte, donor1_CNhs12639_11763-123H8_reverse 1 2972 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor1.CNhs12639.11763-123H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel tenocyte, donor1_CNhs12639_11763-123H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11763-123H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TenocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TenocyteDonor1_CNhs12639_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8\ urlLabel FANTOM5 Details:\ TenocyteDonor1_CNhs12639_ctss_rev TenocyteD1- bigWig tenocyte, donor1_CNhs12639_11763-123H8_reverse 0 2972 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor1.CNhs12639.11763-123H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel tenocyte, donor1_CNhs12639_11763-123H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11763-123H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TenocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TenocyteDonor1_CNhs12639_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8\ urlLabel FANTOM5 Details:\ TenocyteDonor2_CNhs12640_tpm_fwd TenocyteD2+ bigWig tenocyte, donor2_CNhs12640_11765-123I1_forward 1 2973 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor2.CNhs12640.11765-123I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel tenocyte, donor2_CNhs12640_11765-123I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11765-123I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TenocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TenocyteDonor2_CNhs12640_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1\ urlLabel FANTOM5 Details:\ TenocyteDonor2_CNhs12640_ctss_fwd TenocyteD2+ bigWig tenocyte, donor2_CNhs12640_11765-123I1_forward 0 2973 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor2.CNhs12640.11765-123I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel tenocyte, donor2_CNhs12640_11765-123I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11765-123I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TenocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TenocyteDonor2_CNhs12640_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1\ urlLabel FANTOM5 Details:\ TenocyteDonor2_CNhs12640_tpm_rev TenocyteD2- bigWig tenocyte, donor2_CNhs12640_11765-123I1_reverse 1 2974 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor2.CNhs12640.11765-123I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel tenocyte, donor2_CNhs12640_11765-123I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11765-123I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TenocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TenocyteDonor2_CNhs12640_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1\ urlLabel FANTOM5 Details:\ TenocyteDonor2_CNhs12640_ctss_rev TenocyteD2- bigWig tenocyte, donor2_CNhs12640_11765-123I1_reverse 0 2974 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor2.CNhs12640.11765-123I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel tenocyte, donor2_CNhs12640_11765-123I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11765-123I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TenocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TenocyteDonor2_CNhs12640_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1\ urlLabel FANTOM5 Details:\ TenocyteDonor3_CNhs12641_tpm_fwd TenocyteD3+ bigWig tenocyte, donor3_CNhs12641_11768-123I4_forward 1 2975 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor3.CNhs12641.11768-123I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel tenocyte, donor3_CNhs12641_11768-123I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11768-123I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TenocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TenocyteDonor3_CNhs12641_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4\ urlLabel FANTOM5 Details:\ TenocyteDonor3_CNhs12641_ctss_fwd TenocyteD3+ bigWig tenocyte, donor3_CNhs12641_11768-123I4_forward 0 2975 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor3.CNhs12641.11768-123I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel tenocyte, donor3_CNhs12641_11768-123I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11768-123I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TenocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TenocyteDonor3_CNhs12641_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4\ urlLabel FANTOM5 Details:\ TenocyteDonor3_CNhs12641_tpm_rev TenocyteD3- bigWig tenocyte, donor3_CNhs12641_11768-123I4_reverse 1 2976 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor3.CNhs12641.11768-123I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel tenocyte, donor3_CNhs12641_11768-123I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11768-123I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TenocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TenocyteDonor3_CNhs12641_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4\ urlLabel FANTOM5 Details:\ TenocyteDonor3_CNhs12641_ctss_rev TenocyteD3- bigWig tenocyte, donor3_CNhs12641_11768-123I4_reverse 0 2976 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor3.CNhs12641.11768-123I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel tenocyte, donor3_CNhs12641_11768-123I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11768-123I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TenocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TenocyteDonor3_CNhs12641_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor1_CNhs11340_tpm_fwd TrabecularMeshworkCellsD1+ bigWig Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_forward 1 2977 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor1.CNhs11340.11532-120A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11532-120A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrabecularMeshworkCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrabecularMeshworkCellsDonor1_CNhs11340_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor1_CNhs11340_ctss_fwd TrabecularMeshworkCellsD1+ bigWig Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_forward 0 2977 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor1.CNhs11340.11532-120A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11532-120A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrabecularMeshworkCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrabecularMeshworkCellsDonor1_CNhs11340_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor1_CNhs11340_tpm_rev TrabecularMeshworkCellsD1- bigWig Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_reverse 1 2978 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2 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subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrabecularMeshworkCellsDonor2_CNhs12097_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor2_CNhs12097_ctss_fwd TrabecularMeshworkCellsD2+ bigWig Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_forward 0 2979 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor2.CNhs12097.11612-122A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11612-122A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrabecularMeshworkCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrabecularMeshworkCellsDonor2_CNhs12097_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor2_CNhs12097_tpm_rev TrabecularMeshworkCellsD2- bigWig Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_reverse 1 2980 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor2.CNhs12097.11612-122A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11612-122A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrabecularMeshworkCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrabecularMeshworkCellsDonor2_CNhs12097_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor2_CNhs12097_ctss_rev TrabecularMeshworkCellsD2- bigWig Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_reverse 0 2980 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor2.CNhs12097.11612-122A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11612-122A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrabecularMeshworkCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrabecularMeshworkCellsDonor2_CNhs12097_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor3_CNhs12124_tpm_fwd TrabecularMeshworkCellsD3+ bigWig Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_forward 1 2981 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor3.CNhs12124.11693-123A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11693-123A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrabecularMeshworkCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrabecularMeshworkCellsDonor3_CNhs12124_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor3_CNhs12124_ctss_fwd TrabecularMeshworkCellsD3+ bigWig Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_forward 0 2981 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor3.CNhs12124.11693-123A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11693-123A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrabecularMeshworkCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrabecularMeshworkCellsDonor3_CNhs12124_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor3_CNhs12124_tpm_rev TrabecularMeshworkCellsD3- bigWig Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_reverse 1 2982 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor3.CNhs12124.11693-123A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11693-123A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrabecularMeshworkCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrabecularMeshworkCellsDonor3_CNhs12124_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor3_CNhs12124_ctss_rev TrabecularMeshworkCellsD3- bigWig Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_reverse 0 2982 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor3.CNhs12124.11693-123A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11693-123A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrabecularMeshworkCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrabecularMeshworkCellsDonor3_CNhs12124_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1\ urlLabel FANTOM5 Details:\ TrachealEpithelialCellsDonor1_CNhs11092_tpm_fwd TrachealEpithelialCellsD1+ bigWig Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_forward 1 2983 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor1.CNhs11092.11292-117A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11292-117A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrachealEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrachealEpithelialCellsDonor1_CNhs11092_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5\ urlLabel FANTOM5 Details:\ TrachealEpithelialCellsDonor1_CNhs11092_ctss_fwd TrachealEpithelialCellsD1+ bigWig Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_forward 0 2983 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor1.CNhs11092.11292-117A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11292-117A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrachealEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrachealEpithelialCellsDonor1_CNhs11092_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5\ urlLabel FANTOM5 Details:\ TrachealEpithelialCellsDonor1_CNhs11092_tpm_rev TrachealEpithelialCellsD1- bigWig Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_reverse 1 2984 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor1.CNhs11092.11292-117A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11292-117A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrachealEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrachealEpithelialCellsDonor1_CNhs11092_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5\ urlLabel FANTOM5 Details:\ TrachealEpithelialCellsDonor1_CNhs11092_ctss_rev TrachealEpithelialCellsD1- bigWig Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_reverse 0 2984 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor1.CNhs11092.11292-117A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11292-117A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrachealEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrachealEpithelialCellsDonor1_CNhs11092_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5\ urlLabel FANTOM5 Details:\ TrachealEpithelialCellsDonor2_CNhs11993_tpm_fwd TrachealEpithelialCellsD2+ bigWig Tracheal Epithelial Cells, donor2_CNhs11993_11369-118A1_forward 1 2985 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11369-118A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor2.CNhs11993.11369-118A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Tracheal Epithelial Cells, donor2_CNhs11993_11369-118A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11369-118A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrachealEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrachealEpithelialCellsDonor2_CNhs11993_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11369-118A1\ urlLabel FANTOM5 Details:\ TrachealEpithelialCellsDonor2_CNhs11993_ctss_fwd TrachealEpithelialCellsD2+ bigWig Tracheal Epithelial Cells, donor2_CNhs11993_11369-118A1_forward 0 2985 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11369-118A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor2.CNhs11993.11369-118A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Tracheal Epithelial Cells, donor2_CNhs11993_11369-118A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11369-118A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrachealEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrachealEpithelialCellsDonor2_CNhs11993_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11369-118A1\ urlLabel FANTOM5 Details:\ TrachealEpithelialCellsDonor2_CNhs11993_tpm_rev TrachealEpithelialCellsD2- bigWig Tracheal Epithelial Cells, donor2_CNhs11993_11369-118A1_reverse 1 2986 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11369-118A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor2.CNhs11993.11369-118A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Tracheal Epithelial Cells, donor2_CNhs11993_11369-118A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11369-118A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrachealEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrachealEpithelialCellsDonor2_CNhs11993_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11369-118A1\ urlLabel FANTOM5 Details:\ TrachealEpithelialCellsDonor2_CNhs11993_ctss_rev TrachealEpithelialCellsD2- bigWig Tracheal Epithelial Cells, donor2_CNhs11993_11369-118A1_reverse 0 2986 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11369-118A1 regulation 0 bigDataUrl 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bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090612%2c%20donation3.CNhs11949.12184-129A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Whole blood (ribopure), donor090612, donation3_CNhs11949_12184-129A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12184-129A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel WholeBloodD090612Dn3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track WholeBloodRibopureDonor090612Donation3_CNhs11949_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12184-129A6\ urlLabel FANTOM5 Details:\ WholeBloodRibopureDonor090612Donation3_CNhs11949_tpm_rev WholeBloodD090612Dn3- bigWig Whole blood (ribopure), donor090612, donation3_CNhs11949_12184-129A6_reverse 1 3012 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12184-129A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090612%2c%20donation3.CNhs11949.12184-129A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Whole blood (ribopure), donor090612, donation3_CNhs11949_12184-129A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12184-129A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel WholeBloodD090612Dn3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track WholeBloodRibopureDonor090612Donation3_CNhs11949_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12184-129A6\ urlLabel FANTOM5 Details:\ WholeBloodRibopureDonor090612Donation3_CNhs11949_ctss_rev WholeBloodD090612Dn3- bigWig Whole blood (ribopure), donor090612, donation3_CNhs11949_12184-129A6_reverse 0 3012 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12184-129A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090612%2c%20donation3.CNhs11949.12184-129A6.hg38.ctss.rev.bw\ color 0,0,255\ 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biol_rep1_CNhs12564_13031-139E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13031-139E7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr00minBr1+\ subGroups sequenceTech=LQhCAGE category=timecourse strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep1_CNhs12564_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13031-139E7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep1_CNhs12564_tpm_rev Mcf7ToEgf1_00hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep1_CNhs12564_13031-139E7_reverse 1 3014 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13031-139E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep1.CNhs12564.13031-139E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep1_CNhs12564_13031-139E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13031-139E7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr00minBr1-\ subGroups sequenceTech=LQhCAGE category=timecourse strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep1_CNhs12564_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13031-139E7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep1_CNhs12564_ctss_rev Mcf7ToEgf1_00hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep1_CNhs12564_13031-139E7_reverse 0 3014 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13031-139E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep1.CNhs12564.13031-139E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep1_CNhs12564_13031-139E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13031-139E7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr00minBr1-\ subGroups sequenceTech=LQhCAGE category=timecourse strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep1_CNhs12564_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13031-139E7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_tpm_fwd AorticSmsToFgf2_00hr00minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_forward 1 3015 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep3%20%28LK3%29.CNhs13567.12838-137B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12838-137B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_ctss_fwd AorticSmsToFgf2_00hr00minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_forward 0 3015 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep3%20%28LK3%29.CNhs13567.12838-137B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12838-137B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_tpm_rev AorticSmsToFgf2_00hr00minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_reverse 1 3016 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep3%20%28LK3%29.CNhs13567.12838-137B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12838-137B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_ctss_rev AorticSmsToFgf2_00hr00minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_reverse 0 3016 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep3%20%28LK3%29.CNhs13567.12838-137B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12838-137B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_tpm_fwd AorticSmsToFgf2_01hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_forward 1 3017 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep2%20%28LK14%29.CNhs13362.12744-135I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12744-135I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_01hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_ctss_fwd AorticSmsToFgf2_01hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_forward 0 3017 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep2%20%28LK14%29.CNhs13362.12744-135I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12744-135I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_01hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_tpm_rev AorticSmsToFgf2_01hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_reverse 1 3018 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep2%20%28LK14%29.CNhs13362.12744-135I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12744-135I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_01hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_ctss_rev AorticSmsToFgf2_01hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_reverse 0 3018 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep2%20%28LK14%29.CNhs13362.12744-135I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12744-135I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_01hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_tpm_fwd AorticSmsToFgf2_04hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_forward 1 3019 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep1%20%28LK22%29.CNhs13346.12649-134H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12649-134H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_04hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_ctss_fwd AorticSmsToFgf2_04hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_forward 0 3019 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep1%20%28LK22%29.CNhs13346.12649-134H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12649-134H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_04hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_tpm_rev AorticSmsToFgf2_04hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_reverse 1 3020 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep1%20%28LK22%29.CNhs13346.12649-134H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12649-134H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_04hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_ctss_rev AorticSmsToFgf2_04hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_reverse 0 3020 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep1%20%28LK22%29.CNhs13346.12649-134H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12649-134H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_04hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_tpm_fwd AorticSmsToFgf2_04hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_forward 1 3021 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep2%20%28LK23%29.CNhs13365.12747-136A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12747-136A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_04hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_ctss_fwd AorticSmsToFgf2_04hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_forward 0 3021 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep2%20%28LK23%29.CNhs13365.12747-136A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12747-136A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_04hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_tpm_rev AorticSmsToFgf2_04hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_reverse 1 3022 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep2%20%28LK23%29.CNhs13365.12747-136A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12747-136A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_04hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_ctss_rev AorticSmsToFgf2_04hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_reverse 0 3022 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep2%20%28LK23%29.CNhs13365.12747-136A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12747-136A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_04hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_tpm_fwd AorticSmsToFgf2_04hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_forward 1 3023 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep3%20%28LK24%29.CNhs13574.12845-137C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12845-137C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_04hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_ctss_fwd AorticSmsToFgf2_04hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_forward 0 3023 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep3%20%28LK24%29.CNhs13574.12845-137C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12845-137C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_04hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_tpm_rev AorticSmsToFgf2_04hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_reverse 1 3024 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep3%20%28LK24%29.CNhs13574.12845-137C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12845-137C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_04hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_ctss_rev AorticSmsToFgf2_04hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_reverse 0 3024 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep3%20%28LK24%29.CNhs13574.12845-137C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12845-137C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_04hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_tpm_fwd AorticSmsToIL1b_01hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_forward 1 3025 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep3%20%28LK45%29.CNhs13581.12852-137C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12852-137C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_01hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_ctss_fwd AorticSmsToIL1b_01hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_forward 0 3025 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep3%20%28LK45%29.CNhs13581.12852-137C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12852-137C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_01hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_tpm_rev AorticSmsToIL1b_01hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_reverse 1 3026 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep3%20%28LK45%29.CNhs13581.12852-137C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12852-137C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_01hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_ctss_rev AorticSmsToIL1b_01hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_reverse 0 3026 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep3%20%28LK45%29.CNhs13581.12852-137C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12852-137C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_01hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_tpm_fwd AorticSmsToIL1b_02hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_forward 1 3027 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep1%20%28LK46%29.CNhs13354.12657-134I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12657-134I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_02hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_ctss_fwd AorticSmsToIL1b_02hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_forward 0 3027 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep1%20%28LK46%29.CNhs13354.12657-134I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12657-134I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_02hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_tpm_rev AorticSmsToIL1b_02hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_reverse 1 3028 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep1%20%28LK46%29.CNhs13354.12657-134I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12657-134I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_02hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_ctss_rev AorticSmsToIL1b_02hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_reverse 0 3028 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep1%20%28LK46%29.CNhs13354.12657-134I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12657-134I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_02hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_tpm_fwd AorticSmsToIL1b_03hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_forward 1 3029 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep3%20%28LK51%29.CNhs13583.12854-137D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12854-137D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_03hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_ctss_fwd AorticSmsToIL1b_03hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_forward 0 3029 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep3%20%28LK51%29.CNhs13583.12854-137D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12854-137D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_03hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_tpm_rev AorticSmsToIL1b_03hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_reverse 1 3030 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep3%20%28LK51%29.CNhs13583.12854-137D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12854-137D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_03hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_ctss_rev AorticSmsToIL1b_03hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_reverse 0 3030 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep3%20%28LK51%29.CNhs13583.12854-137D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12854-137D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_03hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_tpm_fwd AorticSmsToIL1b_05hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_forward 1 3031 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep3%20%28LK57%29.CNhs13585.12856-137D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12856-137D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_05hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_ctss_fwd AorticSmsToIL1b_05hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_forward 0 3031 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep3%20%28LK57%29.CNhs13585.12856-137D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12856-137D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_05hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_tpm_rev AorticSmsToIL1b_05hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_reverse 1 3032 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep3%20%28LK57%29.CNhs13585.12856-137D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12856-137D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_05hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_ctss_rev AorticSmsToIL1b_05hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_reverse 0 3032 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep3%20%28LK57%29.CNhs13585.12856-137D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12856-137D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_05hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_tpm_fwd H9EmbryonicStemCellsBr1+ bigWig H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_forward 1 3033 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep1%20%28H9ES-1%29.CNhs11917.12626-134E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12626-134E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9EmbryonicStemCellsBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_ctss_fwd H9EmbryonicStemCellsBr1+ bigWig H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_forward 0 3033 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep1%20%28H9ES-1%29.CNhs11917.12626-134E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12626-134E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9EmbryonicStemCellsBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_tpm_rev H9EmbryonicStemCellsBr1- bigWig H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_reverse 1 3034 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep1%20%28H9ES-1%29.CNhs11917.12626-134E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12626-134E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9EmbryonicStemCellsBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_ctss_rev H9EmbryonicStemCellsBr1- bigWig H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_reverse 0 3034 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep1%20%28H9ES-1%29.CNhs11917.12626-134E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12626-134E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9EmbryonicStemCellsBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep2H9ES2_CNhs12824_tpm_fwd H9EmbryonicStemCellsBr2+ bigWig H9 Embryonic Stem cells, biol_rep2 (H9ES-2)_CNhs12824_12724-135G6_forward 1 3035 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12724-135G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep2%20%28H9ES-2%29.CNhs12824.12724-135G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryonic Stem cells, biol_rep2 (H9ES-2)_CNhs12824_12724-135G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12724-135G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9EmbryonicStemCellsBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H9EmbryonicStemCellsBiolRep2H9ES2_CNhs12824_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12724-135G6\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep2H9ES2_CNhs12824_ctss_fwd H9EmbryonicStemCellsBr2+ bigWig H9 Embryonic Stem cells, biol_rep2 (H9ES-2)_CNhs12824_12724-135G6_forward 0 3035 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12724-135G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep2%20%28H9ES-2%29.CNhs12824.12724-135G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryonic Stem cells, biol_rep2 (H9ES-2)_CNhs12824_12724-135G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12724-135G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9EmbryonicStemCellsBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H9EmbryonicStemCellsBiolRep2H9ES2_CNhs12824_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12724-135G6\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep2H9ES2_CNhs12824_tpm_rev H9EmbryonicStemCellsBr2- bigWig H9 Embryonic Stem cells, biol_rep2 (H9ES-2)_CNhs12824_12724-135G6_reverse 1 3036 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12724-135G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep2%20%28H9ES-2%29.CNhs12824.12724-135G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryonic Stem cells, biol_rep2 (H9ES-2)_CNhs12824_12724-135G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12724-135G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9EmbryonicStemCellsBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H9EmbryonicStemCellsBiolRep2H9ES2_CNhs12824_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12724-135G6\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep2H9ES2_CNhs12824_ctss_rev H9EmbryonicStemCellsBr2- bigWig H9 Embryonic Stem cells, biol_rep2 (H9ES-2)_CNhs12824_12724-135G6_reverse 0 3036 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12724-135G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep2%20%28H9ES-2%29.CNhs12824.12724-135G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryonic Stem cells, biol_rep2 (H9ES-2)_CNhs12824_12724-135G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12724-135G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9EmbryonicStemCellsBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H9EmbryonicStemCellsBiolRep2H9ES2_CNhs12824_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12724-135G6\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep3H9ES3_CNhs12837_tpm_fwd H9EmbryonicStemCellsBr3+ bigWig H9 Embryonic Stem cells, biol_rep3 (H9ES-3)_CNhs12837_12822-136I5_forward 1 3037 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12822-136I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep3%20%28H9ES-3%29.CNhs12837.12822-136I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryonic Stem cells, biol_rep3 (H9ES-3)_CNhs12837_12822-136I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12822-136I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9EmbryonicStemCellsBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H9EmbryonicStemCellsBiolRep3H9ES3_CNhs12837_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12822-136I5\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep3H9ES3_CNhs12837_ctss_fwd H9EmbryonicStemCellsBr3+ bigWig H9 Embryonic Stem cells, biol_rep3 (H9ES-3)_CNhs12837_12822-136I5_forward 0 3037 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12822-136I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep3%20%28H9ES-3%29.CNhs12837.12822-136I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryonic Stem cells, biol_rep3 (H9ES-3)_CNhs12837_12822-136I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12822-136I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9EmbryonicStemCellsBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H9EmbryonicStemCellsBiolRep3H9ES3_CNhs12837_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12822-136I5\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep3H9ES3_CNhs12837_tpm_rev H9EmbryonicStemCellsBr3- bigWig H9 Embryonic Stem cells, biol_rep3 (H9ES-3)_CNhs12837_12822-136I5_reverse 1 3038 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12822-136I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep3%20%28H9ES-3%29.CNhs12837.12822-136I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryonic Stem cells, biol_rep3 (H9ES-3)_CNhs12837_12822-136I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12822-136I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9EmbryonicStemCellsBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H9EmbryonicStemCellsBiolRep3H9ES3_CNhs12837_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12822-136I5\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep3H9ES3_CNhs12837_ctss_rev H9EmbryonicStemCellsBr3- bigWig H9 Embryonic Stem cells, biol_rep3 (H9ES-3)_CNhs12837_12822-136I5_reverse 0 3038 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12822-136I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep3%20%28H9ES-3%29.CNhs12837.12822-136I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryonic Stem cells, biol_rep3 (H9ES-3)_CNhs12837_12822-136I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12822-136I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9EmbryonicStemCellsBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H9EmbryonicStemCellsBiolRep3H9ES3_CNhs12837_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12822-136I5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep1_CNhs13659_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day07Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep1_CNhs13659_13334-143C4_forward 1 3039 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13334-143C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep1.CNhs13659.13334-143C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep1_CNhs13659_13334-143C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13334-143C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep1_CNhs13659_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13334-143C4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep1_CNhs13659_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day07Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep1_CNhs13659_13334-143C4_forward 0 3039 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13334-143C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep1.CNhs13659.13334-143C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep1_CNhs13659_13334-143C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13334-143C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep1_CNhs13659_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13334-143C4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep1_CNhs13659_tpm_rev Hes3-gfpCardiomyocyticInduction_Day07Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep1_CNhs13659_13334-143C4_reverse 1 3040 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13334-143C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep1.CNhs13659.13334-143C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep1_CNhs13659_13334-143C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13334-143C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep1_CNhs13659_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13334-143C4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep1_CNhs13659_ctss_rev Hes3-gfpCardiomyocyticInduction_Day07Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep1_CNhs13659_13334-143C4_reverse 0 3040 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13334-143C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep1.CNhs13659.13334-143C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep1_CNhs13659_13334-143C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13334-143C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep1_CNhs13659_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13334-143C4\ urlLabel FANTOM5 Details:\ MelanocyteDonor1MC1_CNhs12816_tpm_fwd MelanocyteD1+ bigWig Melanocyte, donor1 (MC+1)_CNhs12816_12641-134G4_forward 1 3041 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12641-134G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor1%20%28MC%2b1%29.CNhs12816.12641-134G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte, donor1 (MC+1)_CNhs12816_12641-134G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12641-134G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MelanocyteDonor1MC1_CNhs12816_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12641-134G4\ urlLabel FANTOM5 Details:\ MelanocyteDonor1MC1_CNhs12816_ctss_fwd MelanocyteD1+ bigWig Melanocyte, donor1 (MC+1)_CNhs12816_12641-134G4_forward 0 3041 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12641-134G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor1%20%28MC%2b1%29.CNhs12816.12641-134G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte, donor1 (MC+1)_CNhs12816_12641-134G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12641-134G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MelanocyteDonor1MC1_CNhs12816_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12641-134G4\ urlLabel FANTOM5 Details:\ MelanocyteDonor1MC1_CNhs12816_tpm_rev MelanocyteD1- bigWig Melanocyte, donor1 (MC+1)_CNhs12816_12641-134G4_reverse 1 3042 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12641-134G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor1%20%28MC%2b1%29.CNhs12816.12641-134G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte, donor1 (MC+1)_CNhs12816_12641-134G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12641-134G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MelanocyteDonor1MC1_CNhs12816_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12641-134G4\ urlLabel FANTOM5 Details:\ MelanocyteDonor1MC1_CNhs12816_ctss_rev MelanocyteD1- bigWig Melanocyte, donor1 (MC+1)_CNhs12816_12641-134G4_reverse 0 3042 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12641-134G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor1%20%28MC%2b1%29.CNhs12816.12641-134G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte, donor1 (MC+1)_CNhs12816_12641-134G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12641-134G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MelanocyteDonor1MC1_CNhs12816_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12641-134G4\ urlLabel FANTOM5 Details:\ MelanocyteDonor2MC2_CNhs13156_tpm_fwd MelanocyteD2+ bigWig Melanocyte, donor2 (MC+2)_CNhs13156_12739-135I3_forward 1 3043 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12739-135I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor2%20%28MC%2b2%29.CNhs13156.12739-135I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte, donor2 (MC+2)_CNhs13156_12739-135I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12739-135I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteD2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MelanocyteDonor2MC2_CNhs13156_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12739-135I3\ urlLabel FANTOM5 Details:\ MelanocyteDonor2MC2_CNhs13156_ctss_fwd MelanocyteD2+ bigWig Melanocyte, donor2 (MC+2)_CNhs13156_12739-135I3_forward 0 3043 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12739-135I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor2%20%28MC%2b2%29.CNhs13156.12739-135I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte, donor2 (MC+2)_CNhs13156_12739-135I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12739-135I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteD2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MelanocyteDonor2MC2_CNhs13156_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12739-135I3\ urlLabel FANTOM5 Details:\ MelanocyteDonor2MC2_CNhs13156_tpm_rev MelanocyteD2- bigWig Melanocyte, donor2 (MC+2)_CNhs13156_12739-135I3_reverse 1 3044 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12739-135I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor2%20%28MC%2b2%29.CNhs13156.12739-135I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte, donor2 (MC+2)_CNhs13156_12739-135I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12739-135I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteD2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MelanocyteDonor2MC2_CNhs13156_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12739-135I3\ urlLabel FANTOM5 Details:\ MelanocyteDonor2MC2_CNhs13156_ctss_rev MelanocyteD2- bigWig Melanocyte, donor2 (MC+2)_CNhs13156_12739-135I3_reverse 0 3044 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12739-135I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor2%20%28MC%2b2%29.CNhs13156.12739-135I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte, donor2 (MC+2)_CNhs13156_12739-135I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12739-135I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteD2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MelanocyteDonor2MC2_CNhs13156_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12739-135I3\ urlLabel FANTOM5 Details:\ MelanocyteDonor3MC3_CNhs13406_tpm_fwd MelanocyteD3+ bigWig Melanocyte, donor3 (MC+3)_CNhs13406_12837-137B2_forward 1 3045 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12837-137B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor3%20%28MC%2b3%29.CNhs13406.12837-137B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte, donor3 (MC+3)_CNhs13406_12837-137B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12837-137B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteD3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MelanocyteDonor3MC3_CNhs13406_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12837-137B2\ urlLabel FANTOM5 Details:\ MelanocyteDonor3MC3_CNhs13406_ctss_fwd MelanocyteD3+ bigWig Melanocyte, donor3 (MC+3)_CNhs13406_12837-137B2_forward 0 3045 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12837-137B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor3%20%28MC%2b3%29.CNhs13406.12837-137B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte, donor3 (MC+3)_CNhs13406_12837-137B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12837-137B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteD3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MelanocyteDonor3MC3_CNhs13406_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12837-137B2\ urlLabel FANTOM5 Details:\ MelanocyteDonor3MC3_CNhs13406_tpm_rev MelanocyteD3- bigWig Melanocyte, donor3 (MC+3)_CNhs13406_12837-137B2_reverse 1 3046 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12837-137B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor3%20%28MC%2b3%29.CNhs13406.12837-137B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte, donor3 (MC+3)_CNhs13406_12837-137B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12837-137B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteD3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MelanocyteDonor3MC3_CNhs13406_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12837-137B2\ urlLabel FANTOM5 Details:\ MelanocyteDonor3MC3_CNhs13406_ctss_rev MelanocyteD3- bigWig Melanocyte, donor3 (MC+3)_CNhs13406_12837-137B2_reverse 0 3046 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12837-137B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor3%20%28MC%2b3%29.CNhs13406.12837-137B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte, donor3 (MC+3)_CNhs13406_12837-137B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12837-137B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteD3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MelanocyteDonor3MC3_CNhs13406_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12837-137B2\ urlLabel FANTOM5 Details:\ 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MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep2_CNhs13610_tpm_fwd MscAdipogenicInduction_03hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep2_CNhs13610_13257-142C8_forward 1 3063 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13257-142C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep2.CNhs13610.13257-142C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep2_CNhs13610_13257-142C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13257-142C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep2_CNhs13610_tpm_fwd\ type bigWig\ url 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MscAdipogenicInduction_12hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep2_CNhs13613_13260-142D2_forward 0 3067 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13260-142D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2012hr00min%2c%20biol_rep2.CNhs13613.13260-142D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep2_CNhs13613_13260-142D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13260-142D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_12hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep2_CNhs13613_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13260-142D2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep2_CNhs13613_tpm_rev MscAdipogenicInduction_12hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep2_CNhs13613_13260-142D2_reverse 1 3068 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13260-142D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2012hr00min%2c%20biol_rep2.CNhs13613.13260-142D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep2_CNhs13613_13260-142D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13260-142D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_12hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep2_CNhs13613_tpm_rev\ type bigWig\ url 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cells (adipose derived), adipogenic induction, day01, biol_rep1_CNhs13615_13262-142D4_reverse 0 3072 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13262-142D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep1.CNhs13615.13262-142D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep1_CNhs13615_13262-142D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13262-142D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day01Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep1_CNhs13615_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13262-142D4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_tpm_fwd MscAdipogenicInduction_Day04Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_forward 1 3073 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep2.CNhs13623.13269-142E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13269-142E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day04Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_ctss_fwd MscAdipogenicInduction_Day04Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_forward 0 3073 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep2.CNhs13623.13269-142E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13269-142E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day04Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_tpm_rev MscAdipogenicInduction_Day04Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_reverse 1 3074 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep2.CNhs13623.13269-142E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13269-142E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day04Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_ctss_rev MscAdipogenicInduction_Day04Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_reverse 0 3074 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep2.CNhs13623.13269-142E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13269-142E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day04Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_tpm_fwd MscAdipogenicInduction_Day14Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_forward 1 3075 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep2.CNhs13631.13278-142F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13278-142F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day14Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_ctss_fwd MscAdipogenicInduction_Day14Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_forward 0 3075 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep2.CNhs13631.13278-142F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13278-142F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day14Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_tpm_rev MscAdipogenicInduction_Day14Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_reverse 1 3076 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep2.CNhs13631.13278-142F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13278-142F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day14Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_ctss_rev MscAdipogenicInduction_Day14Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_reverse 0 3076 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep2.CNhs13631.13278-142F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13278-142F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day14Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_tpm_fwd MyoblastToMyotubes_Day01D2+ bigWig Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_forward 1 3077 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor2.CNhs14568.13479-145A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13479-145A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_ctss_fwd MyoblastToMyotubes_Day01D2+ bigWig Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_forward 0 3077 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor2.CNhs14568.13479-145A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13479-145A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_tpm_rev MyoblastToMyotubes_Day01D2- bigWig Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_reverse 1 3078 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor2.CNhs14568.13479-145A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13479-145A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_ctss_rev MyoblastToMyotubes_Day01D2- bigWig Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_reverse 0 3078 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor2.CNhs14568.13479-145A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13479-145A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_tpm_fwd MyoblastToMyotubes_Day06D2+ bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor2_CNhs14601_13510-145D9_forward 1 3079 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14601.13510-145D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor2_CNhs14601_13510-145D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13510-145D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_ctss_fwd MyoblastToMyotubes_Day06D2+ bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor2_CNhs14601_13510-145D9_forward 0 3079 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14601.13510-145D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor2_CNhs14601_13510-145D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13510-145D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_tpm_rev MyoblastToMyotubes_Day06D2- bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor2_CNhs14601_13510-145D9_reverse 1 3080 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14601.13510-145D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor2_CNhs14601_13510-145D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13510-145D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_ctss_rev MyoblastToMyotubes_Day06D2- bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor2_CNhs14601_13510-145D9_reverse 0 3080 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14601.13510-145D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor2_CNhs14601_13510-145D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13510-145D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_tpm_fwd MyoblastToMyotubes_Day10D3+ bigWig Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_forward 1 3081 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor3.CNhs14584.13494-145C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13494-145C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_ctss_fwd MyoblastToMyotubes_Day10D3+ bigWig Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_forward 0 3081 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor3.CNhs14584.13494-145C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13494-145C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_tpm_rev MyoblastToMyotubes_Day10D3- bigWig Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_reverse 1 3082 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor3.CNhs14584.13494-145C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13494-145C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_ctss_rev MyoblastToMyotubes_Day10D3- bigWig Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_reverse 0 3082 0 0 255 127 127 255 0 0 0 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/gbdb/hg38/fantom5/hIPS%20%2bCCl2%2c%20biol_rep1.CNhs14217.14383-156B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hIPS +CCl2, biol_rep1_CNhs14217_14383-156B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14383-156B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPS+CCl2Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSCCl2BiolRep1_CNhs14217_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14383-156B9\ urlLabel FANTOM5 Details:\ HIPSCCl2BiolRep1_CNhs14217_ctss_fwd Tc:hIPS+CCl2Br1+ bigWig hIPS +CCl2, biol_rep1_CNhs14217_14383-156B9_forward 0 3105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14383-156B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%20%2bCCl2%2c%20biol_rep1.CNhs14217.14383-156B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hIPS +CCl2, biol_rep1_CNhs14217_14383-156B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14383-156B9 sequence_tech=hCAGE\ parent 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HIPSCCl2BiolRep3_CNhs14219_ctss_rev Tc:hIPS+CCl2Br3- bigWig hIPS +CCl2, biol_rep3_CNhs14219_14385-156C2_reverse 0 3110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14385-156C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%20%2bCCl2%2c%20biol_rep3.CNhs14219.14385-156C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hIPS +CCl2, biol_rep3_CNhs14219_14385-156C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14385-156C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPS+CCl2Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSCCl2BiolRep3_CNhs14219_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14385-156C2\ urlLabel FANTOM5 Details:\ HIPSBiolRep1_CNhs14214_tpm_fwd Tc:hIPSBr1+ bigWig hIPS, biol_rep1_CNhs14214_14380-156B6_forward 1 3111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep1.CNhs14214.14380-156B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hIPS, biol_rep1_CNhs14214_14380-156B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14380-156B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPSBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSBiolRep1_CNhs14214_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6\ urlLabel FANTOM5 Details:\ HIPSBiolRep1_CNhs14214_ctss_fwd Tc:hIPSBr1+ bigWig hIPS, biol_rep1_CNhs14214_14380-156B6_forward 0 3111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep1.CNhs14214.14380-156B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hIPS, biol_rep1_CNhs14214_14380-156B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14380-156B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPSBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSBiolRep1_CNhs14214_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6\ urlLabel FANTOM5 Details:\ HIPSBiolRep1_CNhs14214_tpm_rev Tc:hIPSBr1- bigWig hIPS, biol_rep1_CNhs14214_14380-156B6_reverse 1 3112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep1.CNhs14214.14380-156B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hIPS, biol_rep1_CNhs14214_14380-156B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14380-156B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPSBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSBiolRep1_CNhs14214_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6\ urlLabel FANTOM5 Details:\ HIPSBiolRep1_CNhs14214_ctss_rev Tc:hIPSBr1- bigWig hIPS, biol_rep1_CNhs14214_14380-156B6_reverse 0 3112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep1.CNhs14214.14380-156B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hIPS, biol_rep1_CNhs14214_14380-156B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14380-156B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPSBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSBiolRep1_CNhs14214_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6\ urlLabel FANTOM5 Details:\ HIPSBiolRep2_CNhs14215_tpm_fwd Tc:hIPSBr2+ bigWig hIPS, biol_rep2_CNhs14215_14381-156B7_forward 1 3113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep2.CNhs14215.14381-156B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hIPS, biol_rep2_CNhs14215_14381-156B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14381-156B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPSBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSBiolRep2_CNhs14215_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7\ urlLabel FANTOM5 Details:\ HIPSBiolRep2_CNhs14215_ctss_fwd Tc:hIPSBr2+ bigWig hIPS, biol_rep2_CNhs14215_14381-156B7_forward 0 3113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep2.CNhs14215.14381-156B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hIPS, biol_rep2_CNhs14215_14381-156B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14381-156B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPSBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSBiolRep2_CNhs14215_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7\ urlLabel FANTOM5 Details:\ HIPSBiolRep2_CNhs14215_tpm_rev Tc:hIPSBr2- bigWig hIPS, biol_rep2_CNhs14215_14381-156B7_reverse 1 3114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep2.CNhs14215.14381-156B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hIPS, biol_rep2_CNhs14215_14381-156B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14381-156B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPSBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSBiolRep2_CNhs14215_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7\ urlLabel FANTOM5 Details:\ HIPSBiolRep2_CNhs14215_ctss_rev Tc:hIPSBr2- bigWig hIPS, biol_rep2_CNhs14215_14381-156B7_reverse 0 3114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep2.CNhs14215.14381-156B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hIPS, biol_rep2_CNhs14215_14381-156B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14381-156B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPSBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSBiolRep2_CNhs14215_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7\ urlLabel FANTOM5 Details:\ HIPSBiolRep3_CNhs14216_tpm_fwd Tc:hIPSBr3+ bigWig hIPS, biol_rep3_CNhs14216_14382-156B8_forward 1 3115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep3.CNhs14216.14382-156B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hIPS, biol_rep3_CNhs14216_14382-156B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14382-156B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPSBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSBiolRep3_CNhs14216_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8\ urlLabel FANTOM5 Details:\ HIPSBiolRep3_CNhs14216_ctss_fwd Tc:hIPSBr3+ bigWig hIPS, biol_rep3_CNhs14216_14382-156B8_forward 0 3115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep3.CNhs14216.14382-156B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hIPS, biol_rep3_CNhs14216_14382-156B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14382-156B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPSBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSBiolRep3_CNhs14216_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8\ urlLabel FANTOM5 Details:\ HIPSBiolRep3_CNhs14216_tpm_rev Tc:hIPSBr3- bigWig hIPS, biol_rep3_CNhs14216_14382-156B8_reverse 1 3116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep3.CNhs14216.14382-156B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hIPS, biol_rep3_CNhs14216_14382-156B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14382-156B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPSBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSBiolRep3_CNhs14216_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8\ urlLabel FANTOM5 Details:\ HIPSBiolRep3_CNhs14216_ctss_rev Tc:hIPSBr3- bigWig hIPS, biol_rep3_CNhs14216_14382-156B8_reverse 0 3116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep3.CNhs14216.14382-156B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hIPS, biol_rep3_CNhs14216_14382-156B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14382-156B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPSBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSBiolRep3_CNhs14216_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep1_CNhs12458_tpm_fwd Tc:K562ToHemin_00hr00minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep1_CNhs12458_13079-140B1_forward 1 3117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13079-140B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep1.CNhs12458.13079-140B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep1_CNhs12458_13079-140B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13079-140B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep1_CNhs12458_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13079-140B1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep1_CNhs12458_ctss_fwd Tc:K562ToHemin_00hr00minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep1_CNhs12458_13079-140B1_forward 0 3117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13079-140B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep1.CNhs12458.13079-140B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep1_CNhs12458_13079-140B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13079-140B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep1_CNhs12458_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13079-140B1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep1_CNhs12458_tpm_rev Tc:K562ToHemin_00hr00minBr1- bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep1_CNhs12458_13079-140B1_reverse 1 3118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13079-140B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep1.CNhs12458.13079-140B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep1_CNhs12458_13079-140B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13079-140B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep1_CNhs12458_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13079-140B1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep1_CNhs12458_ctss_rev Tc:K562ToHemin_00hr00minBr1- bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep1_CNhs12458_13079-140B1_reverse 0 3118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13079-140B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep1.CNhs12458.13079-140B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep1_CNhs12458_13079-140B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13079-140B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep1_CNhs12458_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13079-140B1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep2_CNhs12684_tpm_fwd Tc:K562ToHemin_00hr00minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep2_CNhs12684_13145-140I4_forward 1 3119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13145-140I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep2.CNhs12684.13145-140I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep2_CNhs12684_13145-140I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13145-140I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep2_CNhs12684_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13145-140I4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep2_CNhs12684_ctss_fwd Tc:K562ToHemin_00hr00minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep2_CNhs12684_13145-140I4_forward 0 3119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13145-140I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep2.CNhs12684.13145-140I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep2_CNhs12684_13145-140I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13145-140I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep2_CNhs12684_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13145-140I4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep2_CNhs12684_tpm_rev Tc:K562ToHemin_00hr00minBr2- bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep2_CNhs12684_13145-140I4_reverse 1 3120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13145-140I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep2.CNhs12684.13145-140I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep2_CNhs12684_13145-140I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13145-140I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep2_CNhs12684_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13145-140I4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep2_CNhs12684_ctss_rev Tc:K562ToHemin_00hr00minBr2- bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep2_CNhs12684_13145-140I4_reverse 0 3120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13145-140I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep2.CNhs12684.13145-140I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep2_CNhs12684_13145-140I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13145-140I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep2_CNhs12684_ctss_rev\ type bigWig\ url 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K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep2_CNhs12696_tpm_fwd Tc:K562ToHemin_04hrBr2+ bigWig K562 erythroblastic leukemia response to hemin, 04hr, biol_rep2_CNhs12696_13156-141A6_forward 1 3185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13156-141A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2004hr%2c%20biol_rep2.CNhs12696.13156-141A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 04hr, biol_rep2_CNhs12696_13156-141A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13156-141A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_04hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep2_CNhs12696_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13156-141A6\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep2_CNhs12696_ctss_fwd Tc:K562ToHemin_04hrBr2+ bigWig K562 erythroblastic leukemia response to hemin, 04hr, biol_rep2_CNhs12696_13156-141A6_forward 0 3185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13156-141A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2004hr%2c%20biol_rep2.CNhs12696.13156-141A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 04hr, biol_rep2_CNhs12696_13156-141A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13156-141A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_04hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep2_CNhs12696_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13156-141A6\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep2_CNhs12696_tpm_rev Tc:K562ToHemin_04hrBr2- bigWig K562 erythroblastic leukemia response to hemin, 04hr, biol_rep2_CNhs12696_13156-141A6_reverse 1 3186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13156-141A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2004hr%2c%20biol_rep2.CNhs12696.13156-141A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 04hr, biol_rep2_CNhs12696_13156-141A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13156-141A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_04hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep2_CNhs12696_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13156-141A6\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep2_CNhs12696_ctss_rev Tc:K562ToHemin_04hrBr2- bigWig K562 erythroblastic leukemia response to hemin, 04hr, biol_rep2_CNhs12696_13156-141A6_reverse 0 3186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13156-141A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2004hr%2c%20biol_rep2.CNhs12696.13156-141A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 04hr, biol_rep2_CNhs12696_13156-141A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13156-141A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_04hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep2_CNhs12696_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13156-141A6\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep3_CNhs12798_tpm_fwd Tc:K562ToHemin_04hrBr3+ bigWig K562 erythroblastic leukemia response to hemin, 04hr, biol_rep3_CNhs12798_13222-141H9_forward 1 3187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13222-141H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2004hr%2c%20biol_rep3.CNhs12798.13222-141H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 04hr, biol_rep3_CNhs12798_13222-141H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13222-141H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_04hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep3_CNhs12798_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13222-141H9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep3_CNhs12798_ctss_fwd Tc:K562ToHemin_04hrBr3+ bigWig K562 erythroblastic leukemia response to hemin, 04hr, biol_rep3_CNhs12798_13222-141H9_forward 0 3187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13222-141H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2004hr%2c%20biol_rep3.CNhs12798.13222-141H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 04hr, biol_rep3_CNhs12798_13222-141H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13222-141H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_04hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep3_CNhs12798_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13222-141H9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep3_CNhs12798_tpm_rev Tc:K562ToHemin_04hrBr3- bigWig K562 erythroblastic leukemia response to hemin, 04hr, biol_rep3_CNhs12798_13222-141H9_reverse 1 3188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13222-141H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2004hr%2c%20biol_rep3.CNhs12798.13222-141H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 04hr, biol_rep3_CNhs12798_13222-141H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13222-141H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_04hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep3_CNhs12798_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13222-141H9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep3_CNhs12798_ctss_rev Tc:K562ToHemin_04hrBr3- bigWig K562 erythroblastic leukemia response to hemin, 04hr, biol_rep3_CNhs12798_13222-141H9_reverse 0 3188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13222-141H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2004hr%2c%20biol_rep3.CNhs12798.13222-141H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 04hr, biol_rep3_CNhs12798_13222-141H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13222-141H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_04hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep3_CNhs12798_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13222-141H9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep1_CNhs12469_tpm_fwd Tc:K562ToHemin_06hrBr1+ bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep1_CNhs12469_13091-140C4_forward 1 3189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13091-140C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep1.CNhs12469.13091-140C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep1_CNhs12469_13091-140C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13091-140C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_06hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep1_CNhs12469_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13091-140C4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep1_CNhs12469_ctss_fwd Tc:K562ToHemin_06hrBr1+ bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep1_CNhs12469_13091-140C4_forward 0 3189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13091-140C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep1.CNhs12469.13091-140C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep1_CNhs12469_13091-140C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13091-140C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_06hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep1_CNhs12469_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13091-140C4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep1_CNhs12469_tpm_rev Tc:K562ToHemin_06hrBr1- bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep1_CNhs12469_13091-140C4_reverse 1 3190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13091-140C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep1.CNhs12469.13091-140C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep1_CNhs12469_13091-140C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13091-140C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_06hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep1_CNhs12469_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13091-140C4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep1_CNhs12469_ctss_rev Tc:K562ToHemin_06hrBr1- bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep1_CNhs12469_13091-140C4_reverse 0 3190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13091-140C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep1.CNhs12469.13091-140C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep1_CNhs12469_13091-140C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13091-140C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_06hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep1_CNhs12469_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13091-140C4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep2_CNhs12697_tpm_fwd Tc:K562ToHemin_06hrBr2+ bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep2_CNhs12697_13157-141A7_forward 1 3191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13157-141A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep2.CNhs12697.13157-141A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep2_CNhs12697_13157-141A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13157-141A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_06hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep2_CNhs12697_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13157-141A7\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep2_CNhs12697_ctss_fwd Tc:K562ToHemin_06hrBr2+ bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep2_CNhs12697_13157-141A7_forward 0 3191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13157-141A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep2.CNhs12697.13157-141A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep2_CNhs12697_13157-141A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13157-141A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_06hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep2_CNhs12697_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13157-141A7\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep2_CNhs12697_tpm_rev Tc:K562ToHemin_06hrBr2- bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep2_CNhs12697_13157-141A7_reverse 1 3192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13157-141A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep2.CNhs12697.13157-141A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep2_CNhs12697_13157-141A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13157-141A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_06hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep2_CNhs12697_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13157-141A7\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep2_CNhs12697_ctss_rev Tc:K562ToHemin_06hrBr2- bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep2_CNhs12697_13157-141A7_reverse 0 3192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13157-141A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep2.CNhs12697.13157-141A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep2_CNhs12697_13157-141A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13157-141A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_06hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep2_CNhs12697_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13157-141A7\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep3_CNhs12799_tpm_fwd Tc:K562ToHemin_06hrBr3+ bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep3_CNhs12799_13223-141I1_forward 1 3193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13223-141I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep3.CNhs12799.13223-141I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep3_CNhs12799_13223-141I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13223-141I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_06hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep3_CNhs12799_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13223-141I1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep3_CNhs12799_ctss_fwd Tc:K562ToHemin_06hrBr3+ bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep3_CNhs12799_13223-141I1_forward 0 3193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13223-141I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep3.CNhs12799.13223-141I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep3_CNhs12799_13223-141I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13223-141I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_06hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep3_CNhs12799_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13223-141I1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep3_CNhs12799_tpm_rev Tc:K562ToHemin_06hrBr3- bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep3_CNhs12799_13223-141I1_reverse 1 3194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13223-141I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep3.CNhs12799.13223-141I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep3_CNhs12799_13223-141I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13223-141I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_06hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep3_CNhs12799_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13223-141I1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep3_CNhs12799_ctss_rev Tc:K562ToHemin_06hrBr3- bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep3_CNhs12799_13223-141I1_reverse 0 3194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13223-141I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep3.CNhs12799.13223-141I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep3_CNhs12799_13223-141I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13223-141I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_06hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep3_CNhs12799_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13223-141I1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep1_CNhs12470_tpm_fwd Tc:K562ToHemin_12hrBr1+ bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep1_CNhs12470_13092-140C5_forward 1 3195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13092-140C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep1.CNhs12470.13092-140C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep1_CNhs12470_13092-140C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13092-140C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_12hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep1_CNhs12470_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13092-140C5\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep1_CNhs12470_ctss_fwd Tc:K562ToHemin_12hrBr1+ bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep1_CNhs12470_13092-140C5_forward 0 3195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13092-140C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep1.CNhs12470.13092-140C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep1_CNhs12470_13092-140C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13092-140C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_12hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep1_CNhs12470_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13092-140C5\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep1_CNhs12470_tpm_rev Tc:K562ToHemin_12hrBr1- bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep1_CNhs12470_13092-140C5_reverse 1 3196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13092-140C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep1.CNhs12470.13092-140C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep1_CNhs12470_13092-140C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13092-140C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_12hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep1_CNhs12470_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13092-140C5\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep1_CNhs12470_ctss_rev Tc:K562ToHemin_12hrBr1- bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep1_CNhs12470_13092-140C5_reverse 0 3196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13092-140C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep1.CNhs12470.13092-140C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep1_CNhs12470_13092-140C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13092-140C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_12hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep1_CNhs12470_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13092-140C5\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep2_CNhs12698_tpm_fwd Tc:K562ToHemin_12hrBr2+ bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep2_CNhs12698_13158-141A8_forward 1 3197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13158-141A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep2.CNhs12698.13158-141A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep2_CNhs12698_13158-141A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13158-141A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_12hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep2_CNhs12698_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13158-141A8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep2_CNhs12698_ctss_fwd Tc:K562ToHemin_12hrBr2+ bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep2_CNhs12698_13158-141A8_forward 0 3197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13158-141A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep2.CNhs12698.13158-141A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep2_CNhs12698_13158-141A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13158-141A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_12hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep2_CNhs12698_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13158-141A8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep2_CNhs12698_tpm_rev Tc:K562ToHemin_12hrBr2- bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep2_CNhs12698_13158-141A8_reverse 1 3198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13158-141A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep2.CNhs12698.13158-141A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep2_CNhs12698_13158-141A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13158-141A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_12hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep2_CNhs12698_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13158-141A8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep2_CNhs12698_ctss_rev Tc:K562ToHemin_12hrBr2- bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep2_CNhs12698_13158-141A8_reverse 0 3198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13158-141A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep2.CNhs12698.13158-141A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep2_CNhs12698_13158-141A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13158-141A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_12hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep2_CNhs12698_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13158-141A8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep3_CNhs12800_tpm_fwd Tc:K562ToHemin_12hrBr3+ bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep3_CNhs12800_13224-141I2_forward 1 3199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13224-141I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep3.CNhs12800.13224-141I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep3_CNhs12800_13224-141I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13224-141I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_12hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep3_CNhs12800_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13224-141I2\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep3_CNhs12800_ctss_fwd Tc:K562ToHemin_12hrBr3+ bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep3_CNhs12800_13224-141I2_forward 0 3199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13224-141I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep3.CNhs12800.13224-141I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep3_CNhs12800_13224-141I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13224-141I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_12hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep3_CNhs12800_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13224-141I2\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep3_CNhs12800_tpm_rev Tc:K562ToHemin_12hrBr3- bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep3_CNhs12800_13224-141I2_reverse 1 3200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13224-141I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep3.CNhs12800.13224-141I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep3_CNhs12800_13224-141I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13224-141I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_12hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep3_CNhs12800_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13224-141I2\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep3_CNhs12800_ctss_rev Tc:K562ToHemin_12hrBr3- bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep3_CNhs12800_13224-141I2_reverse 0 3200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13224-141I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep3.CNhs12800.13224-141I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep3_CNhs12800_13224-141I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13224-141I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_12hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep3_CNhs12800_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13224-141I2\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep1_CNhs12471_tpm_fwd Tc:K562ToHemin_24hrBr1+ bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep1_CNhs12471_13093-140C6_forward 1 3201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13093-140C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep1.CNhs12471.13093-140C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep1_CNhs12471_13093-140C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13093-140C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_24hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep1_CNhs12471_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13093-140C6\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep1_CNhs12471_ctss_fwd Tc:K562ToHemin_24hrBr1+ bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep1_CNhs12471_13093-140C6_forward 0 3201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13093-140C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep1.CNhs12471.13093-140C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep1_CNhs12471_13093-140C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13093-140C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_24hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep1_CNhs12471_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13093-140C6\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep1_CNhs12471_tpm_rev Tc:K562ToHemin_24hrBr1- bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep1_CNhs12471_13093-140C6_reverse 1 3202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13093-140C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep1.CNhs12471.13093-140C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep1_CNhs12471_13093-140C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13093-140C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_24hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep1_CNhs12471_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13093-140C6\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep1_CNhs12471_ctss_rev Tc:K562ToHemin_24hrBr1- bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep1_CNhs12471_13093-140C6_reverse 0 3202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13093-140C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep1.CNhs12471.13093-140C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep1_CNhs12471_13093-140C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13093-140C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_24hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep1_CNhs12471_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13093-140C6\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep2_CNhs12699_tpm_fwd Tc:K562ToHemin_24hrBr2+ bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep2_CNhs12699_13159-141A9_forward 1 3203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13159-141A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep2.CNhs12699.13159-141A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep2_CNhs12699_13159-141A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13159-141A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_24hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep2_CNhs12699_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13159-141A9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep2_CNhs12699_ctss_fwd Tc:K562ToHemin_24hrBr2+ bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep2_CNhs12699_13159-141A9_forward 0 3203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13159-141A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep2.CNhs12699.13159-141A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep2_CNhs12699_13159-141A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13159-141A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_24hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep2_CNhs12699_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13159-141A9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep2_CNhs12699_tpm_rev Tc:K562ToHemin_24hrBr2- bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep2_CNhs12699_13159-141A9_reverse 1 3204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13159-141A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep2.CNhs12699.13159-141A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep2_CNhs12699_13159-141A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13159-141A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_24hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep2_CNhs12699_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13159-141A9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep2_CNhs12699_ctss_rev Tc:K562ToHemin_24hrBr2- bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep2_CNhs12699_13159-141A9_reverse 0 3204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13159-141A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep2.CNhs12699.13159-141A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep2_CNhs12699_13159-141A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13159-141A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_24hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep2_CNhs12699_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13159-141A9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep3_CNhs12801_tpm_fwd Tc:K562ToHemin_24hrBr3+ bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep3_CNhs12801_13225-141I3_forward 1 3205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13225-141I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep3.CNhs12801.13225-141I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep3_CNhs12801_13225-141I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13225-141I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_24hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep3_CNhs12801_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13225-141I3\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep3_CNhs12801_ctss_fwd Tc:K562ToHemin_24hrBr3+ bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep3_CNhs12801_13225-141I3_forward 0 3205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13225-141I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep3.CNhs12801.13225-141I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep3_CNhs12801_13225-141I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13225-141I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_24hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep3_CNhs12801_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13225-141I3\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep3_CNhs12801_tpm_rev Tc:K562ToHemin_24hrBr3- bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep3_CNhs12801_13225-141I3_reverse 1 3206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13225-141I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep3.CNhs12801.13225-141I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep3_CNhs12801_13225-141I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13225-141I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_24hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep3_CNhs12801_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13225-141I3\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep3_CNhs12801_ctss_rev Tc:K562ToHemin_24hrBr3- bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep3_CNhs12801_13225-141I3_reverse 0 3206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13225-141I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep3.CNhs12801.13225-141I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep3_CNhs12801_13225-141I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13225-141I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_24hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep3_CNhs12801_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13225-141I3\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep1_CNhs12472_tpm_fwd Tc:K562ToHemin_Day02Br1+ bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep1_CNhs12472_13094-140C7_forward 1 3207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13094-140C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep1.CNhs12472.13094-140C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep1_CNhs12472_13094-140C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13094-140C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day02Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep1_CNhs12472_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13094-140C7\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep1_CNhs12472_ctss_fwd Tc:K562ToHemin_Day02Br1+ bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep1_CNhs12472_13094-140C7_forward 0 3207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13094-140C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep1.CNhs12472.13094-140C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep1_CNhs12472_13094-140C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13094-140C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day02Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep1_CNhs12472_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13094-140C7\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep1_CNhs12472_tpm_rev Tc:K562ToHemin_Day02Br1- bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep1_CNhs12472_13094-140C7_reverse 1 3208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13094-140C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep1.CNhs12472.13094-140C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep1_CNhs12472_13094-140C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13094-140C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day02Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep1_CNhs12472_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13094-140C7\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep1_CNhs12472_ctss_rev Tc:K562ToHemin_Day02Br1- bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep1_CNhs12472_13094-140C7_reverse 0 3208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13094-140C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep1.CNhs12472.13094-140C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep1_CNhs12472_13094-140C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13094-140C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day02Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep1_CNhs12472_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13094-140C7\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep2_CNhs12700_tpm_fwd Tc:K562ToHemin_Day02Br2+ bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep2_CNhs12700_13160-141B1_forward 1 3209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13160-141B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep2.CNhs12700.13160-141B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep2_CNhs12700_13160-141B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13160-141B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day02Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep2_CNhs12700_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13160-141B1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep2_CNhs12700_ctss_fwd Tc:K562ToHemin_Day02Br2+ bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep2_CNhs12700_13160-141B1_forward 0 3209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13160-141B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep2.CNhs12700.13160-141B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep2_CNhs12700_13160-141B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13160-141B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day02Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep2_CNhs12700_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13160-141B1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep2_CNhs12700_tpm_rev Tc:K562ToHemin_Day02Br2- bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep2_CNhs12700_13160-141B1_reverse 1 3210 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13160-141B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep2.CNhs12700.13160-141B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep2_CNhs12700_13160-141B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13160-141B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day02Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep2_CNhs12700_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13160-141B1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep2_CNhs12700_ctss_rev Tc:K562ToHemin_Day02Br2- bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep2_CNhs12700_13160-141B1_reverse 0 3210 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13160-141B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep2.CNhs12700.13160-141B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep2_CNhs12700_13160-141B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13160-141B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day02Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep2_CNhs12700_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13160-141B1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep3_CNhs12802_tpm_fwd Tc:K562ToHemin_Day02Br3+ bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep3_CNhs12802_13226-141I4_forward 1 3211 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13226-141I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep3.CNhs12802.13226-141I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep3_CNhs12802_13226-141I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13226-141I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day02Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep3_CNhs12802_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13226-141I4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep3_CNhs12802_ctss_fwd Tc:K562ToHemin_Day02Br3+ bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep3_CNhs12802_13226-141I4_forward 0 3211 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13226-141I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep3.CNhs12802.13226-141I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep3_CNhs12802_13226-141I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13226-141I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day02Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep3_CNhs12802_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13226-141I4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep3_CNhs12802_tpm_rev Tc:K562ToHemin_Day02Br3- bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep3_CNhs12802_13226-141I4_reverse 1 3212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13226-141I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep3.CNhs12802.13226-141I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep3_CNhs12802_13226-141I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13226-141I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day02Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep3_CNhs12802_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13226-141I4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep3_CNhs12802_ctss_rev Tc:K562ToHemin_Day02Br3- bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep3_CNhs12802_13226-141I4_reverse 0 3212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13226-141I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep3.CNhs12802.13226-141I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep3_CNhs12802_13226-141I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13226-141I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day02Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep3_CNhs12802_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13226-141I4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep1_CNhs12473_tpm_fwd Tc:K562ToHemin_Day03Br1+ bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep1_CNhs12473_13095-140C8_forward 1 3213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13095-140C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep1.CNhs12473.13095-140C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep1_CNhs12473_13095-140C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13095-140C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day03Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep1_CNhs12473_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13095-140C8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep1_CNhs12473_ctss_fwd Tc:K562ToHemin_Day03Br1+ bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep1_CNhs12473_13095-140C8_forward 0 3213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13095-140C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep1.CNhs12473.13095-140C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep1_CNhs12473_13095-140C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13095-140C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day03Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep1_CNhs12473_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13095-140C8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep1_CNhs12473_tpm_rev Tc:K562ToHemin_Day03Br1- bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep1_CNhs12473_13095-140C8_reverse 1 3214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13095-140C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep1.CNhs12473.13095-140C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep1_CNhs12473_13095-140C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13095-140C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day03Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep1_CNhs12473_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13095-140C8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep1_CNhs12473_ctss_rev Tc:K562ToHemin_Day03Br1- bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep1_CNhs12473_13095-140C8_reverse 0 3214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13095-140C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep1.CNhs12473.13095-140C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep1_CNhs12473_13095-140C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13095-140C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day03Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep1_CNhs12473_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13095-140C8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep2_CNhs12701_tpm_fwd Tc:K562ToHemin_Day03Br2+ bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep2_CNhs12701_13161-141B2_forward 1 3215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13161-141B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep2.CNhs12701.13161-141B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep2_CNhs12701_13161-141B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13161-141B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day03Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep2_CNhs12701_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13161-141B2\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep2_CNhs12701_ctss_fwd Tc:K562ToHemin_Day03Br2+ bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep2_CNhs12701_13161-141B2_forward 0 3215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13161-141B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep2.CNhs12701.13161-141B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep2_CNhs12701_13161-141B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13161-141B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day03Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep2_CNhs12701_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13161-141B2\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep2_CNhs12701_tpm_rev Tc:K562ToHemin_Day03Br2- bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep2_CNhs12701_13161-141B2_reverse 1 3216 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13161-141B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep2.CNhs12701.13161-141B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep2_CNhs12701_13161-141B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13161-141B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day03Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep2_CNhs12701_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13161-141B2\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep2_CNhs12701_ctss_rev Tc:K562ToHemin_Day03Br2- bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep2_CNhs12701_13161-141B2_reverse 0 3216 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13161-141B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep2.CNhs12701.13161-141B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep2_CNhs12701_13161-141B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13161-141B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day03Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep2_CNhs12701_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13161-141B2\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep3_CNhs12803_tpm_fwd Tc:K562ToHemin_Day03Br3+ bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep3_CNhs12803_13227-141I5_forward 1 3217 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13227-141I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep3.CNhs12803.13227-141I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep3_CNhs12803_13227-141I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13227-141I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day03Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep3_CNhs12803_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13227-141I5\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep3_CNhs12803_ctss_fwd Tc:K562ToHemin_Day03Br3+ bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep3_CNhs12803_13227-141I5_forward 0 3217 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13227-141I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep3.CNhs12803.13227-141I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep3_CNhs12803_13227-141I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13227-141I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day03Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep3_CNhs12803_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13227-141I5\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep3_CNhs12803_tpm_rev Tc:K562ToHemin_Day03Br3- bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep3_CNhs12803_13227-141I5_reverse 1 3218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13227-141I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep3.CNhs12803.13227-141I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep3_CNhs12803_13227-141I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13227-141I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day03Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep3_CNhs12803_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13227-141I5\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep3_CNhs12803_ctss_rev Tc:K562ToHemin_Day03Br3- bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep3_CNhs12803_13227-141I5_reverse 0 3218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13227-141I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep3.CNhs12803.13227-141I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep3_CNhs12803_13227-141I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13227-141I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day03Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep3_CNhs12803_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13227-141I5\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep1_CNhs12474_tpm_fwd Tc:K562ToHemin_Day04Br1+ bigWig K562 erythroblastic leukemia response to hemin, day04, biol_rep1_CNhs12474_13096-140C9_forward 1 3219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13096-140C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day04%2c%20biol_rep1.CNhs12474.13096-140C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day04, biol_rep1_CNhs12474_13096-140C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13096-140C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day04Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep1_CNhs12474_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13096-140C9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep1_CNhs12474_ctss_fwd Tc:K562ToHemin_Day04Br1+ bigWig K562 erythroblastic leukemia response to hemin, day04, biol_rep1_CNhs12474_13096-140C9_forward 0 3219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13096-140C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day04%2c%20biol_rep1.CNhs12474.13096-140C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day04, biol_rep1_CNhs12474_13096-140C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13096-140C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day04Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep1_CNhs12474_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13096-140C9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep1_CNhs12474_tpm_rev Tc:K562ToHemin_Day04Br1- bigWig K562 erythroblastic leukemia response to hemin, day04, biol_rep1_CNhs12474_13096-140C9_reverse 1 3220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13096-140C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day04%2c%20biol_rep1.CNhs12474.13096-140C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day04, biol_rep1_CNhs12474_13096-140C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13096-140C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day04Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep1_CNhs12474_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13096-140C9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep1_CNhs12474_ctss_rev Tc:K562ToHemin_Day04Br1- bigWig K562 erythroblastic leukemia response to hemin, day04, biol_rep1_CNhs12474_13096-140C9_reverse 0 3220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13096-140C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day04%2c%20biol_rep1.CNhs12474.13096-140C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day04, biol_rep1_CNhs12474_13096-140C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13096-140C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day04Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep1_CNhs12474_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13096-140C9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep2_CNhs12702_tpm_fwd Tc:K562ToHemin_Day04Br2+ bigWig K562 erythroblastic leukemia response to hemin, day04, biol_rep2_CNhs12702_13162-141B3_forward 1 3221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13162-141B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day04%2c%20biol_rep2.CNhs12702.13162-141B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day04, biol_rep2_CNhs12702_13162-141B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13162-141B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day04Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep2_CNhs12702_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13162-141B3\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep2_CNhs12702_ctss_fwd Tc:K562ToHemin_Day04Br2+ bigWig K562 erythroblastic leukemia response to hemin, day04, biol_rep2_CNhs12702_13162-141B3_forward 0 3221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13162-141B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day04%2c%20biol_rep2.CNhs12702.13162-141B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day04, biol_rep2_CNhs12702_13162-141B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13162-141B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day04Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep2_CNhs12702_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13162-141B3\ urlLabel FANTOM5 Details:\ 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Subject1)_CNhs13154_12709-135E9_reverse 0 3246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12709-135E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor1%20%28t12%20Subject1%29.CNhs13154.12709-135E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor1 (t12 Subject1)_CNhs13154_12709-135E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12709-135E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_04hrD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS04hrDonor1T12Subject1_CNhs13154_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12709-135E9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS06hrDonor1T14Subject1_CNhs12925_tpm_fwd Tc:MdmToLps_06hrD1+ bigWig Monocyte-derived macrophages response to LPS, 06hr, donor1 (t14 Subject1)_CNhs12925_12711-135F2_forward 1 3247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12711-135F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2006hr%2c%20donor1%20%28t14%20Subject1%29.CNhs12925.12711-135F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 06hr, donor1 (t14 Subject1)_CNhs12925_12711-135F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12711-135F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_06hrD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS06hrDonor1T14Subject1_CNhs12925_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12711-135F2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS06hrDonor1T14Subject1_CNhs12925_ctss_fwd Tc:MdmToLps_06hrD1+ bigWig Monocyte-derived macrophages response to LPS, 06hr, donor1 (t14 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stem cells (adipose derived), undifferentiated control, biol_rep2_CNhs13633_13281-142F5_reverse 1 3268 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13281-142F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20undifferentiated%20control%2c%20biol_rep2.CNhs13633.13281-142F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep2_CNhs13633_13281-142F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13281-142F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MscToAdiposeUndiffBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep2_CNhs13633_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13281-142F5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep2_CNhs13633_ctss_rev 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MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep3_CNhs13634_tpm_fwd Tc:MscToAdiposeUndiffBr3+ bigWig mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep3_CNhs13634_13282-142F6_forward 1 3269 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13282-142F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20undifferentiated%20control%2c%20biol_rep3.CNhs13634.13282-142F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep3_CNhs13634_13282-142F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13282-142F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MscToAdiposeUndiffBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep3_CNhs13634_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13282-142F6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep3_CNhs13634_ctss_fwd Tc:MscToAdiposeUndiffBr3+ bigWig mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep3_CNhs13634_13282-142F6_forward 0 3269 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13282-142F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20undifferentiated%20control%2c%20biol_rep3.CNhs13634.13282-142F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep3_CNhs13634_13282-142F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13282-142F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MscToAdiposeUndiffBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep3_CNhs13634_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13282-142F6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep3_CNhs13634_tpm_rev Tc:MscToAdiposeUndiffBr3- bigWig mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep3_CNhs13634_13282-142F6_reverse 1 3270 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13282-142F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20undifferentiated%20control%2c%20biol_rep3.CNhs13634.13282-142F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep3_CNhs13634_13282-142F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13282-142F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MscToAdiposeUndiffBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep3_CNhs13634_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13282-142F6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep3_CNhs13634_ctss_rev Tc:MscToAdiposeUndiffBr3- bigWig mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep3_CNhs13634_13282-142F6_reverse 0 3270 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13282-142F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20undifferentiated%20control%2c%20biol_rep3.CNhs13634.13282-142F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep3_CNhs13634_13282-142F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13282-142F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MscToAdiposeUndiffBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep3_CNhs13634_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13282-142F6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_tpm_fwd Tc:Saos-2Untreated_Day28Br1+ bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_forward 1 3271 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep1%20%28B1%20T17%29.CNhs14194.12697-135D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12697-135D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Saos-2Untreated_Day28Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_ctss_fwd Tc:Saos-2Untreated_Day28Br1+ bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_forward 0 3271 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep1%20%28B1%20T17%29.CNhs14194.12697-135D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12697-135D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Saos-2Untreated_Day28Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_tpm_rev Tc:Saos-2Untreated_Day28Br1- bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_reverse 1 3272 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep1%20%28B1%20T17%29.CNhs14194.12697-135D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12697-135D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Saos-2Untreated_Day28Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_ctss_rev Tc:Saos-2Untreated_Day28Br1- bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_reverse 0 3272 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep1%20%28B1%20T17%29.CNhs14194.12697-135D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12697-135D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Saos-2Untreated_Day28Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_tpm_fwd Tc:Saos-2Untreated_Day28Br2+ bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_forward 1 3273 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep2%20%28B2%20T17%29.CNhs14195.12795-136F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12795-136F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Saos-2Untreated_Day28Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_ctss_fwd Tc:Saos-2Untreated_Day28Br2+ bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_forward 0 3273 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep2%20%28B2%20T17%29.CNhs14195.12795-136F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12795-136F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Saos-2Untreated_Day28Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_tpm_rev Tc:Saos-2Untreated_Day28Br2- bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_reverse 1 3274 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep2%20%28B2%20T17%29.CNhs14195.12795-136F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12795-136F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Saos-2Untreated_Day28Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_ctss_rev Tc:Saos-2Untreated_Day28Br2- bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_reverse 0 3274 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep2%20%28B2%20T17%29.CNhs14195.12795-136F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12795-136F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Saos-2Untreated_Day28Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_tpm_fwd Tc:Saos-2Untreated_Day28Br3+ bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_forward 1 3275 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep3%20%28B3%20T17%29.CNhs14196.12893-137H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12893-137H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Saos-2Untreated_Day28Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_ctss_fwd Tc:Saos-2Untreated_Day28Br3+ bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_forward 0 3275 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep3%20%28B3%20T17%29.CNhs14196.12893-137H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12893-137H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Saos-2Untreated_Day28Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_tpm_rev Tc:Saos-2Untreated_Day28Br3- bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_reverse 1 3276 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep3%20%28B3%20T17%29.CNhs14196.12893-137H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12893-137H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Saos-2Untreated_Day28Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_ctss_rev Tc:Saos-2Untreated_Day28Br3- bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_reverse 0 3276 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep3%20%28B3%20T17%29.CNhs14196.12893-137H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12893-137H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Saos-2Untreated_Day28Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4\ urlLabel FANTOM5 Details:\ AchillesTendonDonor2_CNhs13435_tpm_fwd AchillesTendonD2+ bigWig achilles tendon, donor2_CNhs13435_10292-104G4_forward 1 3277 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/achilles%20tendon%2c%20donor2.CNhs13435.10292-104G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel achilles tendon, donor2_CNhs13435_10292-104G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10292-104G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AchillesTendonD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AchillesTendonDonor2_CNhs13435_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4\ urlLabel FANTOM5 Details:\ AchillesTendonDonor2_CNhs13435_ctss_fwd AchillesTendonD2+ bigWig achilles tendon, donor2_CNhs13435_10292-104G4_forward 0 3277 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/achilles%20tendon%2c%20donor2.CNhs13435.10292-104G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel achilles tendon, donor2_CNhs13435_10292-104G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10292-104G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AchillesTendonD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AchillesTendonDonor2_CNhs13435_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4\ urlLabel FANTOM5 Details:\ AchillesTendonDonor2_CNhs13435_tpm_rev AchillesTendonD2- bigWig achilles tendon, donor2_CNhs13435_10292-104G4_reverse 1 3278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/achilles%20tendon%2c%20donor2.CNhs13435.10292-104G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel achilles tendon, donor2_CNhs13435_10292-104G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10292-104G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AchillesTendonD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AchillesTendonDonor2_CNhs13435_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4\ urlLabel FANTOM5 Details:\ AchillesTendonDonor2_CNhs13435_ctss_rev AchillesTendonD2- bigWig achilles tendon, donor2_CNhs13435_10292-104G4_reverse 0 3278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/achilles%20tendon%2c%20donor2.CNhs13435.10292-104G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel achilles tendon, donor2_CNhs13435_10292-104G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10292-104G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AchillesTendonD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AchillesTendonDonor2_CNhs13435_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4\ urlLabel FANTOM5 Details:\ AdiposeDonor1_CNhs13972_tpm_fwd AdiposeD1+ bigWig adipose, donor1_CNhs13972_10184-103D4_forward 1 3279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor1.CNhs13972.10184-103D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel adipose, donor1_CNhs13972_10184-103D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10184-103D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor1_CNhs13972_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4\ urlLabel FANTOM5 Details:\ AdiposeDonor1_CNhs13972_ctss_fwd AdiposeD1+ bigWig adipose, donor1_CNhs13972_10184-103D4_forward 0 3279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor1.CNhs13972.10184-103D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel adipose, donor1_CNhs13972_10184-103D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10184-103D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor1_CNhs13972_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4\ urlLabel FANTOM5 Details:\ AdiposeDonor1_CNhs13972_tpm_rev AdiposeD1- bigWig adipose, donor1_CNhs13972_10184-103D4_reverse 1 3280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor1.CNhs13972.10184-103D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel adipose, donor1_CNhs13972_10184-103D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10184-103D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor1_CNhs13972_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4\ urlLabel FANTOM5 Details:\ AdiposeDonor1_CNhs13972_ctss_rev AdiposeD1- bigWig adipose, donor1_CNhs13972_10184-103D4_reverse 0 3280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor1.CNhs13972.10184-103D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel adipose, donor1_CNhs13972_10184-103D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10184-103D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor1_CNhs13972_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4\ urlLabel FANTOM5 Details:\ AdiposeDonor2_CNhs13973_tpm_fwd AdiposeD2+ bigWig adipose, donor2_CNhs13973_10185-103D5_forward 1 3281 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor2.CNhs13973.10185-103D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel adipose, donor2_CNhs13973_10185-103D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10185-103D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor2_CNhs13973_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5\ urlLabel FANTOM5 Details:\ AdiposeDonor2_CNhs13973_ctss_fwd AdiposeD2+ bigWig adipose, donor2_CNhs13973_10185-103D5_forward 0 3281 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor2.CNhs13973.10185-103D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel adipose, donor2_CNhs13973_10185-103D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10185-103D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor2_CNhs13973_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5\ urlLabel FANTOM5 Details:\ AdiposeDonor2_CNhs13973_tpm_rev AdiposeD2- bigWig adipose, donor2_CNhs13973_10185-103D5_reverse 1 3282 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor2.CNhs13973.10185-103D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel adipose, donor2_CNhs13973_10185-103D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10185-103D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor2_CNhs13973_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5\ urlLabel FANTOM5 Details:\ AdiposeDonor2_CNhs13973_ctss_rev AdiposeD2- bigWig adipose, donor2_CNhs13973_10185-103D5_reverse 0 3282 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor2.CNhs13973.10185-103D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel adipose, donor2_CNhs13973_10185-103D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10185-103D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor2_CNhs13973_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5\ urlLabel FANTOM5 Details:\ AdiposeDonor3_CNhs13974_tpm_fwd AdiposeD3+ bigWig adipose, donor3_CNhs13974_10186-103D6_forward 1 3283 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor3.CNhs13974.10186-103D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel adipose, donor3_CNhs13974_10186-103D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10186-103D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD3+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor3_CNhs13974_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6\ urlLabel FANTOM5 Details:\ AdiposeDonor3_CNhs13974_ctss_fwd AdiposeD3+ bigWig adipose, donor3_CNhs13974_10186-103D6_forward 0 3283 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor3.CNhs13974.10186-103D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel adipose, donor3_CNhs13974_10186-103D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10186-103D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD3+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor3_CNhs13974_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6\ urlLabel FANTOM5 Details:\ AdiposeDonor3_CNhs13974_tpm_rev AdiposeD3- bigWig adipose, donor3_CNhs13974_10186-103D6_reverse 1 3284 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor3.CNhs13974.10186-103D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel adipose, donor3_CNhs13974_10186-103D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10186-103D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD3-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor3_CNhs13974_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6\ urlLabel FANTOM5 Details:\ AdiposeDonor3_CNhs13974_ctss_rev AdiposeD3- bigWig adipose, donor3_CNhs13974_10186-103D6_reverse 0 3284 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor3.CNhs13974.10186-103D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel adipose, donor3_CNhs13974_10186-103D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10186-103D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD3-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor3_CNhs13974_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6\ urlLabel FANTOM5 Details:\ AdiposeDonor4_CNhs13975_tpm_fwd AdiposeD4+ bigWig adipose, donor4_CNhs13975_10187-103D7_forward 1 3285 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor4.CNhs13975.10187-103D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel adipose, donor4_CNhs13975_10187-103D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10187-103D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD4+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor4_CNhs13975_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7\ urlLabel FANTOM5 Details:\ AdiposeDonor4_CNhs13975_ctss_fwd AdiposeD4+ bigWig adipose, donor4_CNhs13975_10187-103D7_forward 0 3285 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor4.CNhs13975.10187-103D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel adipose, donor4_CNhs13975_10187-103D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10187-103D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD4+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor4_CNhs13975_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7\ urlLabel FANTOM5 Details:\ AdiposeDonor4_CNhs13975_tpm_rev AdiposeD4- bigWig adipose, donor4_CNhs13975_10187-103D7_reverse 1 3286 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor4.CNhs13975.10187-103D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel adipose, donor4_CNhs13975_10187-103D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10187-103D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD4-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor4_CNhs13975_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7\ urlLabel FANTOM5 Details:\ AdiposeDonor4_CNhs13975_ctss_rev AdiposeD4- bigWig adipose, donor4_CNhs13975_10187-103D7_reverse 0 3286 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor4.CNhs13975.10187-103D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel adipose, donor4_CNhs13975_10187-103D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10187-103D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD4-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor4_CNhs13975_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7\ urlLabel FANTOM5 Details:\ AdiposeTissueAdultPool1_CNhs10615_tpm_fwd AdiposeTissueAdultPl1+ bigWig adipose tissue, adult, pool1_CNhs10615_10010-101C1_forward 1 3287 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%20tissue%2c%20adult%2c%20pool1.CNhs10615.10010-101C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel adipose tissue, adult, pool1_CNhs10615_10010-101C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10010-101C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeTissueAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeTissueAdultPool1_CNhs10615_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1\ urlLabel FANTOM5 Details:\ AdiposeTissueAdultPool1_CNhs10615_ctss_fwd AdiposeTissueAdultPl1+ bigWig adipose tissue, adult, pool1_CNhs10615_10010-101C1_forward 0 3287 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%20tissue%2c%20adult%2c%20pool1.CNhs10615.10010-101C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel adipose tissue, adult, pool1_CNhs10615_10010-101C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10010-101C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeTissueAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeTissueAdultPool1_CNhs10615_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1\ urlLabel FANTOM5 Details:\ AdiposeTissueAdultPool1_CNhs10615_tpm_rev AdiposeTissueAdultPl1- bigWig adipose tissue, adult, pool1_CNhs10615_10010-101C1_reverse 1 3288 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%20tissue%2c%20adult%2c%20pool1.CNhs10615.10010-101C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel adipose tissue, adult, pool1_CNhs10615_10010-101C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10010-101C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeTissueAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeTissueAdultPool1_CNhs10615_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1\ urlLabel FANTOM5 Details:\ AdiposeTissueAdultPool1_CNhs10615_ctss_rev AdiposeTissueAdultPl1- bigWig adipose tissue, adult, pool1_CNhs10615_10010-101C1_reverse 0 3288 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%20tissue%2c%20adult%2c%20pool1.CNhs10615.10010-101C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel adipose tissue, adult, pool1_CNhs10615_10010-101C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10010-101C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeTissueAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeTissueAdultPool1_CNhs10615_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1\ urlLabel FANTOM5 Details:\ AdrenalGlandAdultPool1_CNhs11793_tpm_fwd AdrenalGlandAdultPl1+ bigWig adrenal gland, adult, pool1_CNhs11793_10081-102A9_forward 1 3289 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adrenal%20gland%2c%20adult%2c%20pool1.CNhs11793.10081-102A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel adrenal gland, adult, pool1_CNhs11793_10081-102A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10081-102A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdrenalGlandAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdrenalGlandAdultPool1_CNhs11793_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9\ urlLabel FANTOM5 Details:\ AdrenalGlandAdultPool1_CNhs11793_ctss_fwd AdrenalGlandAdultPl1+ bigWig adrenal gland, adult, pool1_CNhs11793_10081-102A9_forward 0 3289 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adrenal%20gland%2c%20adult%2c%20pool1.CNhs11793.10081-102A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel adrenal gland, adult, pool1_CNhs11793_10081-102A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10081-102A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdrenalGlandAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdrenalGlandAdultPool1_CNhs11793_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9\ urlLabel FANTOM5 Details:\ AdrenalGlandAdultPool1_CNhs11793_tpm_rev AdrenalGlandAdultPl1- bigWig adrenal gland, adult, pool1_CNhs11793_10081-102A9_reverse 1 3290 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adrenal%20gland%2c%20adult%2c%20pool1.CNhs11793.10081-102A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel adrenal gland, adult, pool1_CNhs11793_10081-102A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10081-102A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdrenalGlandAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdrenalGlandAdultPool1_CNhs11793_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9\ urlLabel FANTOM5 Details:\ AdrenalGlandAdultPool1_CNhs11793_ctss_rev AdrenalGlandAdultPl1- bigWig adrenal gland, adult, pool1_CNhs11793_10081-102A9_reverse 0 3290 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adrenal%20gland%2c%20adult%2c%20pool1.CNhs11793.10081-102A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel adrenal gland, adult, pool1_CNhs11793_10081-102A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10081-102A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdrenalGlandAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdrenalGlandAdultPool1_CNhs11793_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9\ urlLabel FANTOM5 Details:\ AmygdalaAdultDonor10196_CNhs13793_tpm_fwd AmygdalaAdultD10196+ bigWig amygdala - adult, donor10196_CNhs13793_10167-103B5_forward 1 3291 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%20-%20adult%2c%20donor10196.CNhs13793.10167-103B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel amygdala - adult, donor10196_CNhs13793_10167-103B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10167-103B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmygdalaAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AmygdalaAdultDonor10196_CNhs13793_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5\ urlLabel FANTOM5 Details:\ AmygdalaAdultDonor10196_CNhs13793_ctss_fwd AmygdalaAdultD10196+ bigWig amygdala - adult, donor10196_CNhs13793_10167-103B5_forward 0 3291 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%20-%20adult%2c%20donor10196.CNhs13793.10167-103B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel amygdala - adult, donor10196_CNhs13793_10167-103B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10167-103B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmygdalaAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AmygdalaAdultDonor10196_CNhs13793_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5\ urlLabel FANTOM5 Details:\ AmygdalaAdultDonor10196_CNhs13793_tpm_rev AmygdalaAdultD10196- bigWig amygdala - adult, donor10196_CNhs13793_10167-103B5_reverse 1 3292 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%20-%20adult%2c%20donor10196.CNhs13793.10167-103B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel amygdala - adult, donor10196_CNhs13793_10167-103B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10167-103B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmygdalaAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AmygdalaAdultDonor10196_CNhs13793_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5\ urlLabel FANTOM5 Details:\ AmygdalaAdultDonor10196_CNhs13793_ctss_rev AmygdalaAdultD10196- bigWig amygdala - adult, donor10196_CNhs13793_10167-103B5_reverse 0 3292 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%20-%20adult%2c%20donor10196.CNhs13793.10167-103B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel amygdala - adult, donor10196_CNhs13793_10167-103B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10167-103B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmygdalaAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AmygdalaAdultDonor10196_CNhs13793_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5\ urlLabel FANTOM5 Details:\ AmygdalaAdultDonor10252_CNhs12311_tpm_fwd AmygdalaAdultD10252+ bigWig amygdala, adult, donor10252_CNhs12311_10151-102I7_forward 1 3293 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%2c%20adult%2c%20donor10252.CNhs12311.10151-102I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel amygdala, adult, donor10252_CNhs12311_10151-102I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10151-102I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmygdalaAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AmygdalaAdultDonor10252_CNhs12311_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7\ urlLabel FANTOM5 Details:\ AmygdalaAdultDonor10252_CNhs12311_ctss_fwd AmygdalaAdultD10252+ bigWig amygdala, adult, donor10252_CNhs12311_10151-102I7_forward 0 3293 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%2c%20adult%2c%20donor10252.CNhs12311.10151-102I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel amygdala, adult, donor10252_CNhs12311_10151-102I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10151-102I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmygdalaAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AmygdalaAdultDonor10252_CNhs12311_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7\ urlLabel FANTOM5 Details:\ AmygdalaAdultDonor10252_CNhs12311_tpm_rev AmygdalaAdultD10252- bigWig amygdala, adult, donor10252_CNhs12311_10151-102I7_reverse 1 3294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%2c%20adult%2c%20donor10252.CNhs12311.10151-102I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel amygdala, adult, donor10252_CNhs12311_10151-102I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10151-102I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmygdalaAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AmygdalaAdultDonor10252_CNhs12311_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7\ urlLabel FANTOM5 Details:\ AmygdalaAdultDonor10252_CNhs12311_ctss_rev AmygdalaAdultD10252- bigWig amygdala, adult, donor10252_CNhs12311_10151-102I7_reverse 0 3294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%2c%20adult%2c%20donor10252.CNhs12311.10151-102I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel amygdala, adult, donor10252_CNhs12311_10151-102I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10151-102I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmygdalaAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AmygdalaAdultDonor10252_CNhs12311_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7\ urlLabel FANTOM5 Details:\ AmygdalaNewbornDonor10223_CNhs14078_tpm_fwd AmygdalaNbD1D10223+ bigWig amygdala, newborn, donor10223_CNhs14078_10360-105E9_forward 1 3295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%2c%20newborn%2c%20donor10223.CNhs14078.10360-105E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel amygdala, newborn, donor10223_CNhs14078_10360-105E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10360-105E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmygdalaNbD1D10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AmygdalaNewbornDonor10223_CNhs14078_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9\ urlLabel FANTOM5 Details:\ AmygdalaNewbornDonor10223_CNhs14078_ctss_fwd AmygdalaNbD1D10223+ bigWig amygdala, newborn, donor10223_CNhs14078_10360-105E9_forward 0 3295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%2c%20newborn%2c%20donor10223.CNhs14078.10360-105E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel amygdala, newborn, donor10223_CNhs14078_10360-105E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10360-105E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmygdalaNbD1D10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AmygdalaNewbornDonor10223_CNhs14078_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9\ urlLabel FANTOM5 Details:\ AmygdalaNewbornDonor10223_CNhs14078_tpm_rev AmygdalaNbD1D10223- bigWig amygdala, newborn, donor10223_CNhs14078_10360-105E9_reverse 1 3296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%2c%20newborn%2c%20donor10223.CNhs14078.10360-105E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel amygdala, newborn, donor10223_CNhs14078_10360-105E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10360-105E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmygdalaNbD1D10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AmygdalaNewbornDonor10223_CNhs14078_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9\ urlLabel FANTOM5 Details:\ AmygdalaNewbornDonor10223_CNhs14078_ctss_rev AmygdalaNbD1D10223- bigWig amygdala, newborn, donor10223_CNhs14078_10360-105E9_reverse 0 3296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%2c%20newborn%2c%20donor10223.CNhs14078.10360-105E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel amygdala, newborn, donor10223_CNhs14078_10360-105E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10360-105E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmygdalaNbD1D10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AmygdalaNewbornDonor10223_CNhs14078_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9\ urlLabel FANTOM5 Details:\ AortaAdultPool1_CNhs11760_tpm_fwd AortaAdultPl1+ bigWig aorta, adult, pool1_CNhs11760_10052-101G7_forward 1 3297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/aorta%2c%20adult%2c%20pool1.CNhs11760.10052-101G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel aorta, adult, pool1_CNhs11760_10052-101G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10052-101G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AortaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AortaAdultPool1_CNhs11760_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7\ urlLabel FANTOM5 Details:\ AortaAdultPool1_CNhs11760_ctss_fwd AortaAdultPl1+ bigWig aorta, adult, pool1_CNhs11760_10052-101G7_forward 0 3297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/aorta%2c%20adult%2c%20pool1.CNhs11760.10052-101G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel aorta, adult, pool1_CNhs11760_10052-101G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10052-101G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AortaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AortaAdultPool1_CNhs11760_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7\ urlLabel FANTOM5 Details:\ AortaAdultPool1_CNhs11760_tpm_rev AortaAdultPl1- bigWig aorta, adult, pool1_CNhs11760_10052-101G7_reverse 1 3298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/aorta%2c%20adult%2c%20pool1.CNhs11760.10052-101G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel aorta, adult, pool1_CNhs11760_10052-101G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10052-101G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AortaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AortaAdultPool1_CNhs11760_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7\ urlLabel FANTOM5 Details:\ AortaAdultPool1_CNhs11760_ctss_rev AortaAdultPl1- bigWig aorta, adult, pool1_CNhs11760_10052-101G7_reverse 0 3298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/aorta%2c%20adult%2c%20pool1.CNhs11760.10052-101G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel aorta, adult, pool1_CNhs11760_10052-101G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10052-101G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AortaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AortaAdultPool1_CNhs11760_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7\ urlLabel FANTOM5 Details:\ AppendixAdult_CNhs12842_tpm_fwd AppendixAdult+ bigWig appendix, adult_CNhs12842_10189-103D9_forward 1 3299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/appendix%2c%20adult.CNhs12842.10189-103D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel appendix, adult_CNhs12842_10189-103D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10189-103D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AppendixAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AppendixAdult_CNhs12842_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9\ urlLabel FANTOM5 Details:\ AppendixAdult_CNhs12842_ctss_fwd AppendixAdult+ bigWig appendix, adult_CNhs12842_10189-103D9_forward 0 3299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/appendix%2c%20adult.CNhs12842.10189-103D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel appendix, adult_CNhs12842_10189-103D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10189-103D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AppendixAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AppendixAdult_CNhs12842_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9\ urlLabel FANTOM5 Details:\ AppendixAdult_CNhs12842_tpm_rev AppendixAdult- bigWig appendix, adult_CNhs12842_10189-103D9_reverse 1 3300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/appendix%2c%20adult.CNhs12842.10189-103D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel appendix, adult_CNhs12842_10189-103D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10189-103D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AppendixAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AppendixAdult_CNhs12842_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9\ urlLabel FANTOM5 Details:\ AppendixAdult_CNhs12842_ctss_rev AppendixAdult- bigWig appendix, adult_CNhs12842_10189-103D9_reverse 0 3300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/appendix%2c%20adult.CNhs12842.10189-103D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel appendix, adult_CNhs12842_10189-103D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10189-103D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AppendixAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AppendixAdult_CNhs12842_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9\ urlLabel FANTOM5 Details:\ ArteryAdult_CNhs12843_tpm_fwd ArteryAdult+ bigWig artery, adult_CNhs12843_10190-103E1_forward 1 3301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/artery%2c%20adult.CNhs12843.10190-103E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel artery, adult_CNhs12843_10190-103E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10190-103E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ArteryAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ArteryAdult_CNhs12843_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1\ urlLabel FANTOM5 Details:\ ArteryAdult_CNhs12843_ctss_fwd ArteryAdult+ bigWig artery, adult_CNhs12843_10190-103E1_forward 0 3301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/artery%2c%20adult.CNhs12843.10190-103E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel artery, adult_CNhs12843_10190-103E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10190-103E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ArteryAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ArteryAdult_CNhs12843_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1\ urlLabel FANTOM5 Details:\ ArteryAdult_CNhs12843_tpm_rev ArteryAdult- bigWig artery, adult_CNhs12843_10190-103E1_reverse 1 3302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/artery%2c%20adult.CNhs12843.10190-103E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel artery, adult_CNhs12843_10190-103E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10190-103E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ArteryAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ArteryAdult_CNhs12843_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1\ urlLabel FANTOM5 Details:\ ArteryAdult_CNhs12843_ctss_rev ArteryAdult- bigWig artery, adult_CNhs12843_10190-103E1_reverse 0 3302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/artery%2c%20adult.CNhs12843.10190-103E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel artery, adult_CNhs12843_10190-103E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10190-103E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ArteryAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ArteryAdult_CNhs12843_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1\ urlLabel FANTOM5 Details:\ BladderAdultPool1_CNhs10616_tpm_fwd BladderAdultPl1+ bigWig bladder, adult, pool1_CNhs10616_10011-101C2_forward 1 3303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bladder%2c%20adult%2c%20pool1.CNhs10616.10011-101C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel bladder, adult, pool1_CNhs10616_10011-101C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10011-101C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BladderAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BladderAdultPool1_CNhs10616_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2\ urlLabel FANTOM5 Details:\ BladderAdultPool1_CNhs10616_ctss_fwd BladderAdultPl1+ bigWig bladder, adult, pool1_CNhs10616_10011-101C2_forward 0 3303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bladder%2c%20adult%2c%20pool1.CNhs10616.10011-101C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel bladder, adult, pool1_CNhs10616_10011-101C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10011-101C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BladderAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BladderAdultPool1_CNhs10616_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2\ urlLabel FANTOM5 Details:\ BladderAdultPool1_CNhs10616_tpm_rev BladderAdultPl1- bigWig bladder, adult, pool1_CNhs10616_10011-101C2_reverse 1 3304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bladder%2c%20adult%2c%20pool1.CNhs10616.10011-101C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel bladder, adult, pool1_CNhs10616_10011-101C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10011-101C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BladderAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BladderAdultPool1_CNhs10616_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2\ urlLabel FANTOM5 Details:\ BladderAdultPool1_CNhs10616_ctss_rev BladderAdultPl1- bigWig bladder, adult, pool1_CNhs10616_10011-101C2_reverse 0 3304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bladder%2c%20adult%2c%20pool1.CNhs10616.10011-101C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel bladder, adult, pool1_CNhs10616_10011-101C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10011-101C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BladderAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BladderAdultPool1_CNhs10616_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2\ urlLabel FANTOM5 Details:\ BloodAdultPool1_CNhs11761_tpm_fwd BloodAdultPl1+ bigWig blood, adult, pool1_CNhs11761_10053-101G8_forward 1 3305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/blood%2c%20adult%2c%20pool1.CNhs11761.10053-101G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel blood, adult, pool1_CNhs11761_10053-101G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10053-101G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BloodAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BloodAdultPool1_CNhs11761_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8\ urlLabel FANTOM5 Details:\ BloodAdultPool1_CNhs11761_ctss_fwd BloodAdultPl1+ bigWig blood, adult, pool1_CNhs11761_10053-101G8_forward 0 3305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/blood%2c%20adult%2c%20pool1.CNhs11761.10053-101G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel blood, adult, pool1_CNhs11761_10053-101G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10053-101G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BloodAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BloodAdultPool1_CNhs11761_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8\ urlLabel FANTOM5 Details:\ BloodAdultPool1_CNhs11761_tpm_rev BloodAdultPl1- bigWig blood, adult, pool1_CNhs11761_10053-101G8_reverse 1 3306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/blood%2c%20adult%2c%20pool1.CNhs11761.10053-101G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel blood, adult, pool1_CNhs11761_10053-101G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10053-101G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BloodAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BloodAdultPool1_CNhs11761_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8\ urlLabel FANTOM5 Details:\ BloodAdultPool1_CNhs11761_ctss_rev BloodAdultPl1- bigWig blood, adult, pool1_CNhs11761_10053-101G8_reverse 0 3306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/blood%2c%20adult%2c%20pool1.CNhs11761.10053-101G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel blood, adult, pool1_CNhs11761_10053-101G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10053-101G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BloodAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BloodAdultPool1_CNhs11761_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8\ urlLabel FANTOM5 Details:\ BoneMarrowAdult_CNhs12845_tpm_fwd BoneMarrowAdult+ bigWig bone marrow, adult_CNhs12845_10192-103E3_forward 1 3307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bone%20marrow%2c%20adult.CNhs12845.10192-103E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel bone marrow, adult_CNhs12845_10192-103E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10192-103E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BoneMarrowAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BoneMarrowAdult_CNhs12845_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3\ urlLabel FANTOM5 Details:\ BoneMarrowAdult_CNhs12845_ctss_fwd BoneMarrowAdult+ bigWig bone marrow, adult_CNhs12845_10192-103E3_forward 0 3307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bone%20marrow%2c%20adult.CNhs12845.10192-103E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel bone marrow, adult_CNhs12845_10192-103E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10192-103E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BoneMarrowAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BoneMarrowAdult_CNhs12845_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3\ urlLabel FANTOM5 Details:\ BoneMarrowAdult_CNhs12845_tpm_rev BoneMarrowAdult- bigWig bone marrow, adult_CNhs12845_10192-103E3_reverse 1 3308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bone%20marrow%2c%20adult.CNhs12845.10192-103E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel bone marrow, adult_CNhs12845_10192-103E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10192-103E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BoneMarrowAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BoneMarrowAdult_CNhs12845_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3\ urlLabel FANTOM5 Details:\ BoneMarrowAdult_CNhs12845_ctss_rev BoneMarrowAdult- bigWig bone marrow, adult_CNhs12845_10192-103E3_reverse 0 3308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bone%20marrow%2c%20adult.CNhs12845.10192-103E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel bone marrow, adult_CNhs12845_10192-103E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10192-103E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BoneMarrowAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BoneMarrowAdult_CNhs12845_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3\ urlLabel FANTOM5 Details:\ BrainAdultDonor1_CNhs11796_tpm_fwd BrainAdultD1+ bigWig brain, adult, donor1_CNhs11796_10084-102B3_forward 1 3309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20adult%2c%20donor1.CNhs11796.10084-102B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel brain, adult, donor1_CNhs11796_10084-102B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10084-102B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BrainAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BrainAdultDonor1_CNhs11796_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3\ urlLabel FANTOM5 Details:\ BrainAdultDonor1_CNhs11796_ctss_fwd BrainAdultD1+ bigWig brain, adult, donor1_CNhs11796_10084-102B3_forward 0 3309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20adult%2c%20donor1.CNhs11796.10084-102B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel brain, adult, donor1_CNhs11796_10084-102B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10084-102B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BrainAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BrainAdultDonor1_CNhs11796_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3\ urlLabel FANTOM5 Details:\ BrainAdultDonor1_CNhs11796_tpm_rev BrainAdultD1- bigWig brain, adult, donor1_CNhs11796_10084-102B3_reverse 1 3310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20adult%2c%20donor1.CNhs11796.10084-102B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel brain, adult, donor1_CNhs11796_10084-102B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10084-102B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BrainAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BrainAdultDonor1_CNhs11796_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3\ urlLabel FANTOM5 Details:\ BrainAdultDonor1_CNhs11796_ctss_rev BrainAdultD1- bigWig brain, adult, donor1_CNhs11796_10084-102B3_reverse 0 3310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20adult%2c%20donor1.CNhs11796.10084-102B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel brain, adult, donor1_CNhs11796_10084-102B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10084-102B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BrainAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BrainAdultDonor1_CNhs11796_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3\ urlLabel FANTOM5 Details:\ BrainAdultPool1_CNhs10617_tpm_fwd BrainAdultPl1+ bigWig brain, adult, pool1_CNhs10617_10012-101C3_forward 1 3311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20adult%2c%20pool1.CNhs10617.10012-101C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel brain, adult, pool1_CNhs10617_10012-101C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10012-101C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BrainAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BrainAdultPool1_CNhs10617_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3\ urlLabel FANTOM5 Details:\ BrainAdultPool1_CNhs10617_ctss_fwd BrainAdultPl1+ bigWig brain, adult, pool1_CNhs10617_10012-101C3_forward 0 3311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20adult%2c%20pool1.CNhs10617.10012-101C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel brain, adult, pool1_CNhs10617_10012-101C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10012-101C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BrainAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BrainAdultPool1_CNhs10617_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3\ urlLabel FANTOM5 Details:\ BrainAdultPool1_CNhs10617_tpm_rev BrainAdultPl1- bigWig brain, adult, pool1_CNhs10617_10012-101C3_reverse 1 3312 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20adult%2c%20pool1.CNhs10617.10012-101C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel brain, adult, pool1_CNhs10617_10012-101C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10012-101C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BrainAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BrainAdultPool1_CNhs10617_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3\ urlLabel FANTOM5 Details:\ BrainAdultPool1_CNhs10617_ctss_rev BrainAdultPl1- bigWig brain, adult, pool1_CNhs10617_10012-101C3_reverse 0 3312 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20adult%2c%20pool1.CNhs10617.10012-101C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel brain, adult, pool1_CNhs10617_10012-101C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10012-101C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BrainAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BrainAdultPool1_CNhs10617_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3\ urlLabel FANTOM5 Details:\ BrainFetalPool1_CNhs11797_tpm_fwd BrainFetalPl1+ bigWig brain, fetal, pool1_CNhs11797_10085-102B4_forward 1 3313 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20fetal%2c%20pool1.CNhs11797.10085-102B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel brain, fetal, pool1_CNhs11797_10085-102B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10085-102B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BrainFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BrainFetalPool1_CNhs11797_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4\ urlLabel FANTOM5 Details:\ BrainFetalPool1_CNhs11797_ctss_fwd BrainFetalPl1+ bigWig brain, fetal, pool1_CNhs11797_10085-102B4_forward 0 3313 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20fetal%2c%20pool1.CNhs11797.10085-102B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel brain, fetal, pool1_CNhs11797_10085-102B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10085-102B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BrainFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BrainFetalPool1_CNhs11797_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4\ urlLabel FANTOM5 Details:\ BrainFetalPool1_CNhs11797_tpm_rev BrainFetalPl1- bigWig brain, fetal, pool1_CNhs11797_10085-102B4_reverse 1 3314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20fetal%2c%20pool1.CNhs11797.10085-102B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel brain, fetal, pool1_CNhs11797_10085-102B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10085-102B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BrainFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BrainFetalPool1_CNhs11797_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4\ urlLabel FANTOM5 Details:\ BrainFetalPool1_CNhs11797_ctss_rev BrainFetalPl1- bigWig brain, fetal, pool1_CNhs11797_10085-102B4_reverse 0 3314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20fetal%2c%20pool1.CNhs11797.10085-102B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel brain, fetal, pool1_CNhs11797_10085-102B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10085-102B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BrainFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BrainFetalPool1_CNhs11797_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4\ urlLabel FANTOM5 Details:\ BreastAdultDonor1_CNhs11792_tpm_fwd BreastAdultD1+ bigWig breast, adult, donor1_CNhs11792_10080-102A8_forward 1 3315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/breast%2c%20adult%2c%20donor1.CNhs11792.10080-102A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel breast, adult, donor1_CNhs11792_10080-102A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10080-102A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BreastAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BreastAdultDonor1_CNhs11792_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8\ urlLabel FANTOM5 Details:\ BreastAdultDonor1_CNhs11792_ctss_fwd BreastAdultD1+ bigWig breast, adult, donor1_CNhs11792_10080-102A8_forward 0 3315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/breast%2c%20adult%2c%20donor1.CNhs11792.10080-102A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel breast, adult, donor1_CNhs11792_10080-102A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10080-102A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BreastAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BreastAdultDonor1_CNhs11792_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8\ urlLabel FANTOM5 Details:\ BreastAdultDonor1_CNhs11792_tpm_rev BreastAdultD1- bigWig breast, adult, donor1_CNhs11792_10080-102A8_reverse 1 3316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/breast%2c%20adult%2c%20donor1.CNhs11792.10080-102A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel breast, adult, donor1_CNhs11792_10080-102A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10080-102A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BreastAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BreastAdultDonor1_CNhs11792_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8\ urlLabel FANTOM5 Details:\ BreastAdultDonor1_CNhs11792_ctss_rev BreastAdultD1- bigWig breast, adult, donor1_CNhs11792_10080-102A8_reverse 0 3316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/breast%2c%20adult%2c%20donor1.CNhs11792.10080-102A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel breast, adult, donor1_CNhs11792_10080-102A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10080-102A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BreastAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BreastAdultDonor1_CNhs11792_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10196_CNhs13802_tpm_fwd CaudateNucleusAdultD10196+ bigWig caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_forward 1 3317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%20-%20adult%2c%20donor10196.CNhs13802.10177-103C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10177-103C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusAdultDonor10196_CNhs13802_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10196_CNhs13802_ctss_fwd CaudateNucleusAdultD10196+ bigWig caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_forward 0 3317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%20-%20adult%2c%20donor10196.CNhs13802.10177-103C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10177-103C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusAdultDonor10196_CNhs13802_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10196_CNhs13802_tpm_rev CaudateNucleusAdultD10196- bigWig caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_reverse 1 3318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%20-%20adult%2c%20donor10196.CNhs13802.10177-103C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10177-103C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusAdultDonor10196_CNhs13802_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10196_CNhs13802_ctss_rev CaudateNucleusAdultD10196- bigWig caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_reverse 0 3318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%20-%20adult%2c%20donor10196.CNhs13802.10177-103C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10177-103C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusAdultDonor10196_CNhs13802_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10252_CNhs12321_tpm_fwd CaudateNucleusAdultD10252+ bigWig caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_forward 1 3319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10252.CNhs12321.10164-103B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10164-103B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusAdultDonor10252_CNhs12321_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10252_CNhs12321_ctss_fwd CaudateNucleusAdultD10252+ bigWig caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_forward 0 3319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10252.CNhs12321.10164-103B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10164-103B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusAdultDonor10252_CNhs12321_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10252_CNhs12321_tpm_rev CaudateNucleusAdultD10252- bigWig caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_reverse 1 3320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10252.CNhs12321.10164-103B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10164-103B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusAdultDonor10252_CNhs12321_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10252_CNhs12321_ctss_rev CaudateNucleusAdultD10252- bigWig caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_reverse 0 3320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10252.CNhs12321.10164-103B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10164-103B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusAdultDonor10252_CNhs12321_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10258_CNhs14232_tpm_fwd CaudateNucleusAdultD10258+ bigWig caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_forward 1 3321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10258.CNhs14232.10379-105H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10379-105H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusAdultDonor10258_CNhs14232_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10258_CNhs14232_ctss_fwd CaudateNucleusAdultD10258+ bigWig caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_forward 0 3321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10258.CNhs14232.10379-105H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10379-105H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusAdultDonor10258_CNhs14232_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10258_CNhs14232_tpm_rev CaudateNucleusAdultD10258- bigWig caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_reverse 1 3322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10258.CNhs14232.10379-105H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10379-105H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusAdultDonor10258_CNhs14232_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10258_CNhs14232_ctss_rev CaudateNucleusAdultD10258- bigWig caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_reverse 0 3322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10258.CNhs14232.10379-105H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10379-105H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusAdultDonor10258_CNhs14232_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1\ urlLabel FANTOM5 Details:\ CaudateNucleusNewbornDonor10223_CNhs14071_tpm_fwd CaudateNucleusNbD10223+ bigWig caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_forward 1 3323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20newborn%2c%20donor10223.CNhs14071.10354-105E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10354-105E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusNewbornDonor10223_CNhs14071_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3\ urlLabel FANTOM5 Details:\ CaudateNucleusNewbornDonor10223_CNhs14071_ctss_fwd CaudateNucleusNbD10223+ bigWig caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_forward 0 3323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20newborn%2c%20donor10223.CNhs14071.10354-105E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10354-105E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusNewbornDonor10223_CNhs14071_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3\ urlLabel FANTOM5 Details:\ CaudateNucleusNewbornDonor10223_CNhs14071_tpm_rev CaudateNucleusNbD10223- bigWig caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_reverse 1 3324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20newborn%2c%20donor10223.CNhs14071.10354-105E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10354-105E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusNewbornDonor10223_CNhs14071_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3\ urlLabel FANTOM5 Details:\ CaudateNucleusNewbornDonor10223_CNhs14071_ctss_rev CaudateNucleusNbD10223- bigWig caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_reverse 0 3324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20newborn%2c%20donor10223.CNhs14071.10354-105E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10354-105E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusNewbornDonor10223_CNhs14071_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3\ urlLabel FANTOM5 Details:\ CerebellumAdultDonor10196_CNhs13799_tpm_fwd CerebellumAdultD10196+ bigWig cerebellum - adult, donor10196_CNhs13799_10173-103C2_forward 1 3325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%20-%20adult%2c%20donor10196.CNhs13799.10173-103C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cerebellum - adult, donor10196_CNhs13799_10173-103C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10173-103C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumAdultDonor10196_CNhs13799_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2\ urlLabel FANTOM5 Details:\ CerebellumAdultDonor10196_CNhs13799_ctss_fwd CerebellumAdultD10196+ bigWig cerebellum - adult, donor10196_CNhs13799_10173-103C2_forward 0 3325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%20-%20adult%2c%20donor10196.CNhs13799.10173-103C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cerebellum - adult, donor10196_CNhs13799_10173-103C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10173-103C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumAdultDonor10196_CNhs13799_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2\ urlLabel FANTOM5 Details:\ CerebellumAdultDonor10196_CNhs13799_tpm_rev CerebellumAdultD10196- bigWig cerebellum - adult, donor10196_CNhs13799_10173-103C2_reverse 1 3326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%20-%20adult%2c%20donor10196.CNhs13799.10173-103C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cerebellum - adult, donor10196_CNhs13799_10173-103C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10173-103C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumAdultDonor10196_CNhs13799_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2\ urlLabel FANTOM5 Details:\ CerebellumAdultDonor10196_CNhs13799_ctss_rev CerebellumAdultD10196- bigWig cerebellum - adult, donor10196_CNhs13799_10173-103C2_reverse 0 3326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%20-%20adult%2c%20donor10196.CNhs13799.10173-103C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cerebellum - adult, donor10196_CNhs13799_10173-103C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10173-103C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumAdultDonor10196_CNhs13799_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2\ urlLabel FANTOM5 Details:\ CerebellumAdultDonor10252_CNhs12323_tpm_fwd CerebellumAdultD10252+ bigWig cerebellum, adult, donor10252_CNhs12323_10166-103B4_forward 1 3327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20adult%2c%20donor10252.CNhs12323.10166-103B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cerebellum, adult, donor10252_CNhs12323_10166-103B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10166-103B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumAdultDonor10252_CNhs12323_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4\ urlLabel FANTOM5 Details:\ CerebellumAdultDonor10252_CNhs12323_ctss_fwd CerebellumAdultD10252+ bigWig cerebellum, adult, donor10252_CNhs12323_10166-103B4_forward 0 3327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20adult%2c%20donor10252.CNhs12323.10166-103B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cerebellum, adult, donor10252_CNhs12323_10166-103B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10166-103B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumAdultDonor10252_CNhs12323_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4\ urlLabel FANTOM5 Details:\ CerebellumAdultDonor10252_CNhs12323_tpm_rev CerebellumAdultD10252- bigWig cerebellum, adult, donor10252_CNhs12323_10166-103B4_reverse 1 3328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20adult%2c%20donor10252.CNhs12323.10166-103B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cerebellum, adult, donor10252_CNhs12323_10166-103B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10166-103B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumAdultDonor10252_CNhs12323_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4\ urlLabel FANTOM5 Details:\ CerebellumAdultDonor10252_CNhs12323_ctss_rev CerebellumAdultD10252- bigWig cerebellum, adult, donor10252_CNhs12323_10166-103B4_reverse 0 3328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20adult%2c%20donor10252.CNhs12323.10166-103B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cerebellum, adult, donor10252_CNhs12323_10166-103B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10166-103B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumAdultDonor10252_CNhs12323_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4\ urlLabel FANTOM5 Details:\ CerebellumAdultPool1_CNhs11795_tpm_fwd CerebellumAdultPl1+ bigWig cerebellum, adult, pool1_CNhs11795_10083-102B2_forward 1 3329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20adult%2c%20pool1.CNhs11795.10083-102B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cerebellum, adult, pool1_CNhs11795_10083-102B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10083-102B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumAdultPool1_CNhs11795_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2\ urlLabel FANTOM5 Details:\ CerebellumAdultPool1_CNhs11795_ctss_fwd CerebellumAdultPl1+ bigWig cerebellum, adult, pool1_CNhs11795_10083-102B2_forward 0 3329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20adult%2c%20pool1.CNhs11795.10083-102B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cerebellum, adult, pool1_CNhs11795_10083-102B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10083-102B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumAdultPool1_CNhs11795_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2\ urlLabel FANTOM5 Details:\ CerebellumAdultPool1_CNhs11795_tpm_rev CerebellumAdultPl1- bigWig cerebellum, adult, pool1_CNhs11795_10083-102B2_reverse 1 3330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20adult%2c%20pool1.CNhs11795.10083-102B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cerebellum, adult, pool1_CNhs11795_10083-102B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10083-102B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumAdultPool1_CNhs11795_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2\ urlLabel FANTOM5 Details:\ CerebellumAdultPool1_CNhs11795_ctss_rev CerebellumAdultPl1- bigWig cerebellum, adult, pool1_CNhs11795_10083-102B2_reverse 0 3330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20adult%2c%20pool1.CNhs11795.10083-102B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cerebellum, adult, pool1_CNhs11795_10083-102B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10083-102B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumAdultPool1_CNhs11795_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2\ urlLabel FANTOM5 Details:\ CerebellumNewbornDonor10223_CNhs14075_tpm_fwd CerebellumNbD10223+ bigWig cerebellum, newborn, donor10223_CNhs14075_10357-105E6_forward 1 3331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20newborn%2c%20donor10223.CNhs14075.10357-105E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cerebellum, newborn, donor10223_CNhs14075_10357-105E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10357-105E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumNewbornDonor10223_CNhs14075_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6\ urlLabel FANTOM5 Details:\ CerebellumNewbornDonor10223_CNhs14075_ctss_fwd CerebellumNbD10223+ bigWig cerebellum, newborn, donor10223_CNhs14075_10357-105E6_forward 0 3331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20newborn%2c%20donor10223.CNhs14075.10357-105E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cerebellum, newborn, donor10223_CNhs14075_10357-105E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10357-105E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumNewbornDonor10223_CNhs14075_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6\ urlLabel FANTOM5 Details:\ CerebellumNewbornDonor10223_CNhs14075_tpm_rev CerebellumNbD10223- bigWig cerebellum, newborn, donor10223_CNhs14075_10357-105E6_reverse 1 3332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20newborn%2c%20donor10223.CNhs14075.10357-105E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cerebellum, newborn, donor10223_CNhs14075_10357-105E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10357-105E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumNewbornDonor10223_CNhs14075_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6\ urlLabel FANTOM5 Details:\ CerebellumNewbornDonor10223_CNhs14075_ctss_rev CerebellumNbD10223- bigWig cerebellum, newborn, donor10223_CNhs14075_10357-105E6_reverse 0 3332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20newborn%2c%20donor10223.CNhs14075.10357-105E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cerebellum, newborn, donor10223_CNhs14075_10357-105E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10357-105E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumNewbornDonor10223_CNhs14075_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6\ urlLabel FANTOM5 Details:\ CerebralMeningesAdult_CNhs12840_tpm_fwd CerebralMeningesAdult+ bigWig cerebral meninges, adult_CNhs12840_10188-103D8_forward 1 3333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebral%20meninges%2c%20adult.CNhs12840.10188-103D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cerebral meninges, adult_CNhs12840_10188-103D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10188-103D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebralMeningesAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebralMeningesAdult_CNhs12840_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8\ urlLabel FANTOM5 Details:\ CerebralMeningesAdult_CNhs12840_ctss_fwd CerebralMeningesAdult+ bigWig cerebral meninges, adult_CNhs12840_10188-103D8_forward 0 3333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebral%20meninges%2c%20adult.CNhs12840.10188-103D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cerebral meninges, adult_CNhs12840_10188-103D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10188-103D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebralMeningesAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebralMeningesAdult_CNhs12840_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8\ urlLabel FANTOM5 Details:\ CerebralMeningesAdult_CNhs12840_tpm_rev CerebralMeningesAdult- bigWig cerebral meninges, adult_CNhs12840_10188-103D8_reverse 1 3334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebral%20meninges%2c%20adult.CNhs12840.10188-103D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cerebral meninges, adult_CNhs12840_10188-103D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10188-103D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebralMeningesAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebralMeningesAdult_CNhs12840_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8\ urlLabel FANTOM5 Details:\ CerebralMeningesAdult_CNhs12840_ctss_rev CerebralMeningesAdult- bigWig cerebral meninges, adult_CNhs12840_10188-103D8_reverse 0 3334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebral%20meninges%2c%20adult.CNhs12840.10188-103D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cerebral meninges, adult_CNhs12840_10188-103D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10188-103D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebralMeningesAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebralMeningesAdult_CNhs12840_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8\ urlLabel FANTOM5 Details:\ CerebrospinalFluidDonor2_CNhs13437_tpm_fwd CerebrospinalFluidD2+ bigWig cerebrospinal fluid, donor2_CNhs13437_10294-104G6_forward 1 3335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebrospinal%20fluid%2c%20donor2.CNhs13437.10294-104G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cerebrospinal fluid, donor2_CNhs13437_10294-104G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10294-104G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebrospinalFluidD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebrospinalFluidDonor2_CNhs13437_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6\ urlLabel FANTOM5 Details:\ CerebrospinalFluidDonor2_CNhs13437_ctss_fwd CerebrospinalFluidD2+ bigWig cerebrospinal fluid, donor2_CNhs13437_10294-104G6_forward 0 3335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebrospinal%20fluid%2c%20donor2.CNhs13437.10294-104G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cerebrospinal fluid, donor2_CNhs13437_10294-104G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10294-104G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebrospinalFluidD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebrospinalFluidDonor2_CNhs13437_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6\ urlLabel FANTOM5 Details:\ CerebrospinalFluidDonor2_CNhs13437_tpm_rev CerebrospinalFluidD2- bigWig cerebrospinal fluid, donor2_CNhs13437_10294-104G6_reverse 1 3336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebrospinal%20fluid%2c%20donor2.CNhs13437.10294-104G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cerebrospinal fluid, donor2_CNhs13437_10294-104G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10294-104G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebrospinalFluidD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebrospinalFluidDonor2_CNhs13437_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6\ urlLabel FANTOM5 Details:\ CerebrospinalFluidDonor2_CNhs13437_ctss_rev CerebrospinalFluidD2- bigWig cerebrospinal fluid, donor2_CNhs13437_10294-104G6_reverse 0 3336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebrospinal%20fluid%2c%20donor2.CNhs13437.10294-104G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cerebrospinal fluid, donor2_CNhs13437_10294-104G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10294-104G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebrospinalFluidD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebrospinalFluidDonor2_CNhs13437_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6\ urlLabel FANTOM5 Details:\ CervixAdultPool1_CNhs10618_tpm_fwd CervixAdultPl1+ bigWig cervix, adult, pool1_CNhs10618_10013-101C4_forward 1 3337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cervix%2c%20adult%2c%20pool1.CNhs10618.10013-101C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cervix, adult, pool1_CNhs10618_10013-101C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10013-101C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CervixAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CervixAdultPool1_CNhs10618_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4\ urlLabel FANTOM5 Details:\ CervixAdultPool1_CNhs10618_ctss_fwd CervixAdultPl1+ bigWig cervix, adult, pool1_CNhs10618_10013-101C4_forward 0 3337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cervix%2c%20adult%2c%20pool1.CNhs10618.10013-101C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cervix, adult, pool1_CNhs10618_10013-101C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10013-101C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CervixAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CervixAdultPool1_CNhs10618_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4\ urlLabel FANTOM5 Details:\ CervixAdultPool1_CNhs10618_tpm_rev CervixAdultPl1- bigWig cervix, adult, pool1_CNhs10618_10013-101C4_reverse 1 3338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cervix%2c%20adult%2c%20pool1.CNhs10618.10013-101C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cervix, adult, pool1_CNhs10618_10013-101C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10013-101C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CervixAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CervixAdultPool1_CNhs10618_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4\ urlLabel FANTOM5 Details:\ CervixAdultPool1_CNhs10618_ctss_rev CervixAdultPl1- bigWig cervix, adult, pool1_CNhs10618_10013-101C4_reverse 0 3338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cervix%2c%20adult%2c%20pool1.CNhs10618.10013-101C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cervix, adult, pool1_CNhs10618_10013-101C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10013-101C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CervixAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CervixAdultPool1_CNhs10618_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4\ urlLabel FANTOM5 Details:\ ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_tpm_fwd ClontechUniversalReferencePl1+ bigWig Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_forward 1 3339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Clontech%20Human%20Universal%20Reference%20Total%20RNA%2c%20pool1.CNhs10608.10000-101A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10000-101A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ClontechUniversalReferencePl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1\ urlLabel FANTOM5 Details:\ ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_ctss_fwd ClontechUniversalReferencePl1+ bigWig Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_forward 0 3339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Clontech%20Human%20Universal%20Reference%20Total%20RNA%2c%20pool1.CNhs10608.10000-101A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10000-101A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ClontechUniversalReferencePl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1\ urlLabel FANTOM5 Details:\ ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_tpm_rev ClontechUniversalReferencePl1- bigWig Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_reverse 1 3340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Clontech%20Human%20Universal%20Reference%20Total%20RNA%2c%20pool1.CNhs10608.10000-101A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10000-101A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ClontechUniversalReferencePl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1\ urlLabel FANTOM5 Details:\ ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_ctss_rev ClontechUniversalReferencePl1- bigWig Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_reverse 0 3340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Clontech%20Human%20Universal%20Reference%20Total%20RNA%2c%20pool1.CNhs10608.10000-101A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10000-101A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ClontechUniversalReferencePl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1\ urlLabel FANTOM5 Details:\ ColonAdultDonor1_CNhs11794_tpm_fwd ColonAdultD1+ bigWig colon, adult, donor1_CNhs11794_10082-102B1_forward 1 3341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20adult%2c%20donor1.CNhs11794.10082-102B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel colon, adult, donor1_CNhs11794_10082-102B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10082-102B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ColonAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ColonAdultDonor1_CNhs11794_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1\ urlLabel FANTOM5 Details:\ ColonAdultDonor1_CNhs11794_ctss_fwd ColonAdultD1+ bigWig colon, adult, donor1_CNhs11794_10082-102B1_forward 0 3341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20adult%2c%20donor1.CNhs11794.10082-102B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel colon, adult, donor1_CNhs11794_10082-102B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10082-102B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ColonAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ColonAdultDonor1_CNhs11794_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1\ urlLabel FANTOM5 Details:\ ColonAdultDonor1_CNhs11794_tpm_rev ColonAdultD1- bigWig colon, adult, donor1_CNhs11794_10082-102B1_reverse 1 3342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20adult%2c%20donor1.CNhs11794.10082-102B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel colon, adult, donor1_CNhs11794_10082-102B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10082-102B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ColonAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ColonAdultDonor1_CNhs11794_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1\ urlLabel FANTOM5 Details:\ ColonAdultDonor1_CNhs11794_ctss_rev ColonAdultD1- bigWig colon, adult, donor1_CNhs11794_10082-102B1_reverse 0 3342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20adult%2c%20donor1.CNhs11794.10082-102B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel colon, adult, donor1_CNhs11794_10082-102B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10082-102B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ColonAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ColonAdultDonor1_CNhs11794_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1\ urlLabel FANTOM5 Details:\ ColonAdultPool1_CNhs10619_tpm_fwd ColonAdultPl1+ bigWig colon, adult, pool1_CNhs10619_10014-101C5_forward 1 3343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20adult%2c%20pool1.CNhs10619.10014-101C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel colon, adult, pool1_CNhs10619_10014-101C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10014-101C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ColonAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ColonAdultPool1_CNhs10619_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5\ urlLabel FANTOM5 Details:\ ColonAdultPool1_CNhs10619_ctss_fwd ColonAdultPl1+ bigWig colon, adult, pool1_CNhs10619_10014-101C5_forward 0 3343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20adult%2c%20pool1.CNhs10619.10014-101C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel colon, adult, pool1_CNhs10619_10014-101C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10014-101C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ColonAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ColonAdultPool1_CNhs10619_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5\ urlLabel FANTOM5 Details:\ ColonAdultPool1_CNhs10619_tpm_rev ColonAdultPl1- bigWig colon, adult, pool1_CNhs10619_10014-101C5_reverse 1 3344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20adult%2c%20pool1.CNhs10619.10014-101C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel colon, adult, pool1_CNhs10619_10014-101C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10014-101C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ColonAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ColonAdultPool1_CNhs10619_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5\ urlLabel FANTOM5 Details:\ ColonAdultPool1_CNhs10619_ctss_rev ColonAdultPl1- bigWig colon, adult, pool1_CNhs10619_10014-101C5_reverse 0 3344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20adult%2c%20pool1.CNhs10619.10014-101C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel colon, adult, pool1_CNhs10619_10014-101C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10014-101C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ColonAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ColonAdultPool1_CNhs10619_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5\ urlLabel FANTOM5 Details:\ ColonFetalDonor1_CNhs11780_tpm_fwd ColonFetalD1+ bigWig colon, fetal, donor1_CNhs11780_10070-101I7_forward 1 3345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20fetal%2c%20donor1.CNhs11780.10070-101I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel colon, fetal, donor1_CNhs11780_10070-101I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10070-101I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ColonFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ColonFetalDonor1_CNhs11780_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7\ urlLabel FANTOM5 Details:\ ColonFetalDonor1_CNhs11780_ctss_fwd ColonFetalD1+ bigWig colon, fetal, donor1_CNhs11780_10070-101I7_forward 0 3345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20fetal%2c%20donor1.CNhs11780.10070-101I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel colon, fetal, donor1_CNhs11780_10070-101I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10070-101I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ColonFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ColonFetalDonor1_CNhs11780_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7\ urlLabel FANTOM5 Details:\ ColonFetalDonor1_CNhs11780_tpm_rev ColonFetalD1- bigWig colon, fetal, donor1_CNhs11780_10070-101I7_reverse 1 3346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20fetal%2c%20donor1.CNhs11780.10070-101I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel colon, fetal, donor1_CNhs11780_10070-101I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10070-101I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ColonFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ColonFetalDonor1_CNhs11780_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7\ urlLabel FANTOM5 Details:\ ColonFetalDonor1_CNhs11780_ctss_rev ColonFetalD1- bigWig colon, fetal, donor1_CNhs11780_10070-101I7_reverse 0 3346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20fetal%2c%20donor1.CNhs11780.10070-101I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel colon, fetal, donor1_CNhs11780_10070-101I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10070-101I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ColonFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ColonFetalDonor1_CNhs11780_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7\ urlLabel FANTOM5 Details:\ CorpusCallosumAdultPool1_CNhs10649_tpm_fwd CorpusCallosumAdultPl1+ bigWig corpus callosum, adult, pool1_CNhs10649_10042-101F6_forward 1 3347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/corpus%20callosum%2c%20adult%2c%20pool1.CNhs10649.10042-101F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel corpus callosum, adult, pool1_CNhs10649_10042-101F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10042-101F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CorpusCallosumAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CorpusCallosumAdultPool1_CNhs10649_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6\ urlLabel FANTOM5 Details:\ CorpusCallosumAdultPool1_CNhs10649_ctss_fwd CorpusCallosumAdultPl1+ bigWig corpus callosum, adult, pool1_CNhs10649_10042-101F6_forward 0 3347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/corpus%20callosum%2c%20adult%2c%20pool1.CNhs10649.10042-101F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel corpus callosum, adult, pool1_CNhs10649_10042-101F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10042-101F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CorpusCallosumAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CorpusCallosumAdultPool1_CNhs10649_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6\ urlLabel FANTOM5 Details:\ CorpusCallosumAdultPool1_CNhs10649_tpm_rev CorpusCallosumAdultPl1- bigWig corpus callosum, adult, pool1_CNhs10649_10042-101F6_reverse 1 3348 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/corpus%20callosum%2c%20adult%2c%20pool1.CNhs10649.10042-101F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel corpus callosum, adult, pool1_CNhs10649_10042-101F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10042-101F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CorpusCallosumAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CorpusCallosumAdultPool1_CNhs10649_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6\ urlLabel FANTOM5 Details:\ CorpusCallosumAdultPool1_CNhs10649_ctss_rev CorpusCallosumAdultPl1- bigWig corpus callosum, adult, pool1_CNhs10649_10042-101F6_reverse 0 3348 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/corpus%20callosum%2c%20adult%2c%20pool1.CNhs10649.10042-101F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel corpus callosum, adult, pool1_CNhs10649_10042-101F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10042-101F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CorpusCallosumAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CorpusCallosumAdultPool1_CNhs10649_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6\ urlLabel FANTOM5 Details:\ CruciateLigamentDonor2_CNhs13439_tpm_fwd CruciateLigamentD2+ bigWig cruciate ligament, donor2_CNhs13439_10295-104G7_forward 1 3349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cruciate%20ligament%2c%20donor2.CNhs13439.10295-104G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cruciate ligament, donor2_CNhs13439_10295-104G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10295-104G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CruciateLigamentD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CruciateLigamentDonor2_CNhs13439_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7\ urlLabel FANTOM5 Details:\ CruciateLigamentDonor2_CNhs13439_ctss_fwd CruciateLigamentD2+ bigWig cruciate ligament, donor2_CNhs13439_10295-104G7_forward 0 3349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cruciate%20ligament%2c%20donor2.CNhs13439.10295-104G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cruciate ligament, donor2_CNhs13439_10295-104G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10295-104G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CruciateLigamentD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CruciateLigamentDonor2_CNhs13439_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7\ urlLabel FANTOM5 Details:\ CruciateLigamentDonor2_CNhs13439_tpm_rev CruciateLigamentD2- bigWig cruciate ligament, donor2_CNhs13439_10295-104G7_reverse 1 3350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cruciate%20ligament%2c%20donor2.CNhs13439.10295-104G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cruciate ligament, donor2_CNhs13439_10295-104G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10295-104G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CruciateLigamentD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CruciateLigamentDonor2_CNhs13439_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7\ urlLabel FANTOM5 Details:\ CruciateLigamentDonor2_CNhs13439_ctss_rev CruciateLigamentD2- bigWig cruciate ligament, donor2_CNhs13439_10295-104G7_reverse 0 3350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cruciate%20ligament%2c%20donor2.CNhs13439.10295-104G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cruciate ligament, donor2_CNhs13439_10295-104G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10295-104G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CruciateLigamentD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CruciateLigamentDonor2_CNhs13439_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7\ urlLabel FANTOM5 Details:\ DiaphragmFetalDonor1_CNhs11779_tpm_fwd DiaphragmFetalD1+ bigWig diaphragm, fetal, donor1_CNhs11779_10069-101I6_forward 1 3351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/diaphragm%2c%20fetal%2c%20donor1.CNhs11779.10069-101I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel diaphragm, fetal, donor1_CNhs11779_10069-101I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10069-101I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DiaphragmFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DiaphragmFetalDonor1_CNhs11779_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6\ urlLabel FANTOM5 Details:\ DiaphragmFetalDonor1_CNhs11779_ctss_fwd DiaphragmFetalD1+ bigWig diaphragm, fetal, donor1_CNhs11779_10069-101I6_forward 0 3351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/diaphragm%2c%20fetal%2c%20donor1.CNhs11779.10069-101I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel diaphragm, fetal, donor1_CNhs11779_10069-101I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10069-101I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DiaphragmFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DiaphragmFetalDonor1_CNhs11779_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6\ urlLabel FANTOM5 Details:\ DiaphragmFetalDonor1_CNhs11779_tpm_rev DiaphragmFetalD1- bigWig diaphragm, fetal, donor1_CNhs11779_10069-101I6_reverse 1 3352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/diaphragm%2c%20fetal%2c%20donor1.CNhs11779.10069-101I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel diaphragm, fetal, donor1_CNhs11779_10069-101I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10069-101I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DiaphragmFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DiaphragmFetalDonor1_CNhs11779_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6\ urlLabel FANTOM5 Details:\ DiaphragmFetalDonor1_CNhs11779_ctss_rev DiaphragmFetalD1- bigWig diaphragm, fetal, donor1_CNhs11779_10069-101I6_reverse 0 3352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/diaphragm%2c%20fetal%2c%20donor1.CNhs11779.10069-101I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel diaphragm, fetal, donor1_CNhs11779_10069-101I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10069-101I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DiaphragmFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DiaphragmFetalDonor1_CNhs11779_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6\ urlLabel FANTOM5 Details:\ DiencephalonAdult_CNhs12610_tpm_fwd DiencephalonAdult+ bigWig diencephalon, adult_CNhs12610_10193-103E4_forward 1 3353 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/diencephalon%2c%20adult.CNhs12610.10193-103E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel diencephalon, adult_CNhs12610_10193-103E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10193-103E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DiencephalonAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DiencephalonAdult_CNhs12610_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4\ urlLabel FANTOM5 Details:\ DiencephalonAdult_CNhs12610_ctss_fwd DiencephalonAdult+ bigWig diencephalon, adult_CNhs12610_10193-103E4_forward 0 3353 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/diencephalon%2c%20adult.CNhs12610.10193-103E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel diencephalon, adult_CNhs12610_10193-103E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10193-103E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DiencephalonAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DiencephalonAdult_CNhs12610_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4\ urlLabel FANTOM5 Details:\ DiencephalonAdult_CNhs12610_tpm_rev DiencephalonAdult- bigWig diencephalon, adult_CNhs12610_10193-103E4_reverse 1 3354 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/diencephalon%2c%20adult.CNhs12610.10193-103E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel diencephalon, adult_CNhs12610_10193-103E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10193-103E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DiencephalonAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DiencephalonAdult_CNhs12610_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4\ urlLabel FANTOM5 Details:\ DiencephalonAdult_CNhs12610_ctss_rev DiencephalonAdult- bigWig diencephalon, adult_CNhs12610_10193-103E4_reverse 0 3354 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/diencephalon%2c%20adult.CNhs12610.10193-103E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel diencephalon, adult_CNhs12610_10193-103E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10193-103E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DiencephalonAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DiencephalonAdult_CNhs12610_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4\ urlLabel FANTOM5 Details:\ DuctusDeferensAdult_CNhs12846_tpm_fwd DuctusDeferensAdult+ bigWig ductus deferens, adult_CNhs12846_10196-103E7_forward 1 3355 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ductus%20deferens%2c%20adult.CNhs12846.10196-103E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ductus deferens, adult_CNhs12846_10196-103E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10196-103E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuctusDeferensAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuctusDeferensAdult_CNhs12846_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7\ urlLabel FANTOM5 Details:\ DuctusDeferensAdult_CNhs12846_ctss_fwd DuctusDeferensAdult+ bigWig ductus deferens, adult_CNhs12846_10196-103E7_forward 0 3355 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ductus%20deferens%2c%20adult.CNhs12846.10196-103E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ductus deferens, adult_CNhs12846_10196-103E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10196-103E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuctusDeferensAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuctusDeferensAdult_CNhs12846_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7\ urlLabel FANTOM5 Details:\ DuctusDeferensAdult_CNhs12846_tpm_rev DuctusDeferensAdult- bigWig ductus deferens, adult_CNhs12846_10196-103E7_reverse 1 3356 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ductus%20deferens%2c%20adult.CNhs12846.10196-103E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ductus deferens, adult_CNhs12846_10196-103E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10196-103E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuctusDeferensAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuctusDeferensAdult_CNhs12846_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7\ urlLabel FANTOM5 Details:\ DuctusDeferensAdult_CNhs12846_ctss_rev DuctusDeferensAdult- bigWig ductus deferens, adult_CNhs12846_10196-103E7_reverse 0 3356 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ductus%20deferens%2c%20adult.CNhs12846.10196-103E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ductus deferens, adult_CNhs12846_10196-103E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10196-103E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuctusDeferensAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuctusDeferensAdult_CNhs12846_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7\ urlLabel FANTOM5 Details:\ DuodenumFetalDonor1TechRep1_CNhs11781_tpm_fwd DuodenumFetalD1Tr1+ bigWig duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_forward 1 3357 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11781.10071-101I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuodenumFetalD1Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuodenumFetalDonor1TechRep1_CNhs11781_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ DuodenumFetalDonor1TechRep1_CNhs11781_ctss_fwd DuodenumFetalD1Tr1+ bigWig duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_forward 0 3357 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11781.10071-101I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuodenumFetalD1Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuodenumFetalDonor1TechRep1_CNhs11781_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ DuodenumFetalDonor1TechRep1_CNhs11781_tpm_rev DuodenumFetalD1Tr1- bigWig duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_reverse 1 3358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11781.10071-101I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuodenumFetalD1Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuodenumFetalDonor1TechRep1_CNhs11781_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ DuodenumFetalDonor1TechRep1_CNhs11781_ctss_rev DuodenumFetalD1Tr1- bigWig duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_reverse 0 3358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11781.10071-101I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuodenumFetalD1Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuodenumFetalDonor1TechRep1_CNhs11781_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ DuodenumFetalDonor1TechRep2_CNhs12997_tpm_fwd DuodenumFetalD1Tr2+ bigWig duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_forward 1 3359 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12997.10071-101I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuodenumFetalD1Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuodenumFetalDonor1TechRep2_CNhs12997_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ DuodenumFetalDonor1TechRep2_CNhs12997_ctss_fwd DuodenumFetalD1Tr2+ bigWig duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_forward 0 3359 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12997.10071-101I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuodenumFetalD1Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuodenumFetalDonor1TechRep2_CNhs12997_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ DuodenumFetalDonor1TechRep2_CNhs12997_tpm_rev DuodenumFetalD1Tr2- bigWig duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_reverse 1 3360 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12997.10071-101I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuodenumFetalD1Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuodenumFetalDonor1TechRep2_CNhs12997_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ DuodenumFetalDonor1TechRep2_CNhs12997_ctss_rev DuodenumFetalD1Tr2- bigWig duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_reverse 0 3360 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12997.10071-101I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuodenumFetalD1Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuodenumFetalDonor1TechRep2_CNhs12997_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ DuraMaterAdultDonor1_CNhs10648_tpm_fwd DuraMaterAdultD1+ bigWig dura mater, adult, donor1_CNhs10648_10041-101F5_forward 1 3361 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/dura%20mater%2c%20adult%2c%20donor1.CNhs10648.10041-101F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel dura mater, adult, donor1_CNhs10648_10041-101F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10041-101F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuraMaterAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuraMaterAdultDonor1_CNhs10648_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5\ urlLabel FANTOM5 Details:\ DuraMaterAdultDonor1_CNhs10648_ctss_fwd DuraMaterAdultD1+ bigWig dura mater, adult, donor1_CNhs10648_10041-101F5_forward 0 3361 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/dura%20mater%2c%20adult%2c%20donor1.CNhs10648.10041-101F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel dura mater, adult, donor1_CNhs10648_10041-101F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10041-101F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuraMaterAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuraMaterAdultDonor1_CNhs10648_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5\ urlLabel FANTOM5 Details:\ DuraMaterAdultDonor1_CNhs10648_tpm_rev DuraMaterAdultD1- bigWig dura mater, adult, donor1_CNhs10648_10041-101F5_reverse 1 3362 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/dura%20mater%2c%20adult%2c%20donor1.CNhs10648.10041-101F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel dura mater, adult, donor1_CNhs10648_10041-101F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10041-101F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuraMaterAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuraMaterAdultDonor1_CNhs10648_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5\ urlLabel FANTOM5 Details:\ DuraMaterAdultDonor1_CNhs10648_ctss_rev DuraMaterAdultD1- bigWig dura mater, adult, donor1_CNhs10648_10041-101F5_reverse 0 3362 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/dura%20mater%2c%20adult%2c%20donor1.CNhs10648.10041-101F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel dura mater, adult, donor1_CNhs10648_10041-101F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10041-101F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuraMaterAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuraMaterAdultDonor1_CNhs10648_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5\ urlLabel FANTOM5 Details:\ EpididymisAdult_CNhs12847_tpm_fwd EpididymisAdult+ bigWig epididymis, adult_CNhs12847_10197-103E8_forward 1 3363 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epididymis%2c%20adult.CNhs12847.10197-103E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel epididymis, adult_CNhs12847_10197-103E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10197-103E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EpididymisAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EpididymisAdult_CNhs12847_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8\ urlLabel FANTOM5 Details:\ EpididymisAdult_CNhs12847_ctss_fwd EpididymisAdult+ bigWig epididymis, adult_CNhs12847_10197-103E8_forward 0 3363 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epididymis%2c%20adult.CNhs12847.10197-103E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel epididymis, adult_CNhs12847_10197-103E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10197-103E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EpididymisAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EpididymisAdult_CNhs12847_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8\ urlLabel FANTOM5 Details:\ EpididymisAdult_CNhs12847_tpm_rev EpididymisAdult- bigWig epididymis, adult_CNhs12847_10197-103E8_reverse 1 3364 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epididymis%2c%20adult.CNhs12847.10197-103E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel epididymis, adult_CNhs12847_10197-103E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10197-103E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EpididymisAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EpididymisAdult_CNhs12847_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8\ urlLabel FANTOM5 Details:\ EpididymisAdult_CNhs12847_ctss_rev EpididymisAdult- bigWig epididymis, adult_CNhs12847_10197-103E8_reverse 0 3364 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epididymis%2c%20adult.CNhs12847.10197-103E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel epididymis, adult_CNhs12847_10197-103E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10197-103E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EpididymisAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EpididymisAdult_CNhs12847_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8\ urlLabel FANTOM5 Details:\ EsophagusAdultPool1_CNhs10620_tpm_fwd EsophagusAdultPl1+ bigWig esophagus, adult, pool1_CNhs10620_10015-101C6_forward 1 3365 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/esophagus%2c%20adult%2c%20pool1.CNhs10620.10015-101C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel esophagus, adult, pool1_CNhs10620_10015-101C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10015-101C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EsophagusAdultPool1_CNhs10620_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6\ urlLabel FANTOM5 Details:\ EsophagusAdultPool1_CNhs10620_ctss_fwd EsophagusAdultPl1+ bigWig esophagus, adult, pool1_CNhs10620_10015-101C6_forward 0 3365 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/esophagus%2c%20adult%2c%20pool1.CNhs10620.10015-101C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel esophagus, adult, pool1_CNhs10620_10015-101C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10015-101C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EsophagusAdultPool1_CNhs10620_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6\ urlLabel FANTOM5 Details:\ EsophagusAdultPool1_CNhs10620_tpm_rev EsophagusAdultPl1- bigWig esophagus, adult, pool1_CNhs10620_10015-101C6_reverse 1 3366 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/esophagus%2c%20adult%2c%20pool1.CNhs10620.10015-101C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel esophagus, adult, pool1_CNhs10620_10015-101C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10015-101C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EsophagusAdultPool1_CNhs10620_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6\ urlLabel FANTOM5 Details:\ EsophagusAdultPool1_CNhs10620_ctss_rev EsophagusAdultPl1- bigWig esophagus, adult, pool1_CNhs10620_10015-101C6_reverse 0 3366 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/esophagus%2c%20adult%2c%20pool1.CNhs10620.10015-101C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel esophagus, adult, pool1_CNhs10620_10015-101C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10015-101C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EsophagusAdultPool1_CNhs10620_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6\ urlLabel FANTOM5 Details:\ EyeFetalDonor1_CNhs11762_tpm_fwd EyeFetalD1+ bigWig eye, fetal, donor1_CNhs11762_10054-101G9_forward 1 3367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%2c%20fetal%2c%20donor1.CNhs11762.10054-101G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel eye, fetal, donor1_CNhs11762_10054-101G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10054-101G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeFetalDonor1_CNhs11762_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9\ urlLabel FANTOM5 Details:\ EyeFetalDonor1_CNhs11762_ctss_fwd EyeFetalD1+ bigWig eye, fetal, donor1_CNhs11762_10054-101G9_forward 0 3367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%2c%20fetal%2c%20donor1.CNhs11762.10054-101G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel eye, fetal, donor1_CNhs11762_10054-101G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10054-101G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeFetalDonor1_CNhs11762_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9\ urlLabel FANTOM5 Details:\ EyeFetalDonor1_CNhs11762_tpm_rev EyeFetalD1- bigWig eye, fetal, donor1_CNhs11762_10054-101G9_reverse 1 3368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%2c%20fetal%2c%20donor1.CNhs11762.10054-101G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel eye, fetal, donor1_CNhs11762_10054-101G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10054-101G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeFetalDonor1_CNhs11762_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9\ urlLabel FANTOM5 Details:\ EyeFetalDonor1_CNhs11762_ctss_rev EyeFetalD1- bigWig eye, fetal, donor1_CNhs11762_10054-101G9_reverse 0 3368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%2c%20fetal%2c%20donor1.CNhs11762.10054-101G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel eye, fetal, donor1_CNhs11762_10054-101G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10054-101G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeFetalDonor1_CNhs11762_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9\ urlLabel FANTOM5 Details:\ EyeMuscleInferiorRectusDonor1_CNhs13444_tpm_fwd EyeMuscleInferiorRectusD1+ bigWig eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_forward 1 3369 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20inferior%20rectus%2c%20donor1.CNhs13444.10272-104E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10272-104E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleInferiorRectusD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleInferiorRectusDonor1_CNhs13444_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2\ urlLabel FANTOM5 Details:\ EyeMuscleInferiorRectusDonor1_CNhs13444_ctss_fwd EyeMuscleInferiorRectusD1+ bigWig eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_forward 0 3369 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20inferior%20rectus%2c%20donor1.CNhs13444.10272-104E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10272-104E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleInferiorRectusD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleInferiorRectusDonor1_CNhs13444_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2\ urlLabel FANTOM5 Details:\ EyeMuscleInferiorRectusDonor1_CNhs13444_tpm_rev EyeMuscleInferiorRectusD1- bigWig eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_reverse 1 3370 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20inferior%20rectus%2c%20donor1.CNhs13444.10272-104E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10272-104E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleInferiorRectusD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleInferiorRectusDonor1_CNhs13444_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2\ urlLabel FANTOM5 Details:\ EyeMuscleInferiorRectusDonor1_CNhs13444_ctss_rev EyeMuscleInferiorRectusD1- bigWig eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_reverse 0 3370 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20inferior%20rectus%2c%20donor1.CNhs13444.10272-104E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10272-104E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleInferiorRectusD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleInferiorRectusDonor1_CNhs13444_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2\ urlLabel FANTOM5 Details:\ EyeMuscleLateralDonor2_CNhs13442_tpm_fwd EyeMuscleLateralD2+ bigWig eye - muscle lateral, donor2_CNhs13442_10298-104H1_forward 1 3371 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20lateral%2c%20donor2.CNhs13442.10298-104H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel eye - muscle lateral, donor2_CNhs13442_10298-104H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10298-104H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleLateralD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleLateralDonor2_CNhs13442_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1\ urlLabel FANTOM5 Details:\ EyeMuscleLateralDonor2_CNhs13442_ctss_fwd EyeMuscleLateralD2+ bigWig eye - muscle lateral, donor2_CNhs13442_10298-104H1_forward 0 3371 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20lateral%2c%20donor2.CNhs13442.10298-104H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel eye - muscle lateral, donor2_CNhs13442_10298-104H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10298-104H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleLateralD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleLateralDonor2_CNhs13442_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1\ urlLabel FANTOM5 Details:\ EyeMuscleLateralDonor2_CNhs13442_tpm_rev EyeMuscleLateralD2- bigWig eye - muscle lateral, donor2_CNhs13442_10298-104H1_reverse 1 3372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20lateral%2c%20donor2.CNhs13442.10298-104H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel eye - muscle lateral, donor2_CNhs13442_10298-104H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10298-104H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleLateralD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleLateralDonor2_CNhs13442_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1\ urlLabel FANTOM5 Details:\ EyeMuscleLateralDonor2_CNhs13442_ctss_rev EyeMuscleLateralD2- bigWig eye - muscle lateral, donor2_CNhs13442_10298-104H1_reverse 0 3372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20lateral%2c%20donor2.CNhs13442.10298-104H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel eye - muscle lateral, donor2_CNhs13442_10298-104H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10298-104H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleLateralD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleLateralDonor2_CNhs13442_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1\ urlLabel FANTOM5 Details:\ EyeMuscleMedialDonor2_CNhs13443_tpm_fwd EyeMuscleMedialD2+ bigWig eye - muscle medial, donor2_CNhs13443_10299-104H2_forward 1 3373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20medial%2c%20donor2.CNhs13443.10299-104H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel eye - muscle medial, donor2_CNhs13443_10299-104H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10299-104H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleMedialD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleMedialDonor2_CNhs13443_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2\ urlLabel FANTOM5 Details:\ EyeMuscleMedialDonor2_CNhs13443_ctss_fwd EyeMuscleMedialD2+ bigWig eye - muscle medial, donor2_CNhs13443_10299-104H2_forward 0 3373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20medial%2c%20donor2.CNhs13443.10299-104H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel eye - muscle medial, donor2_CNhs13443_10299-104H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10299-104H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleMedialD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleMedialDonor2_CNhs13443_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2\ urlLabel FANTOM5 Details:\ EyeMuscleMedialDonor2_CNhs13443_tpm_rev EyeMuscleMedialD2- bigWig eye - muscle medial, donor2_CNhs13443_10299-104H2_reverse 1 3374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20medial%2c%20donor2.CNhs13443.10299-104H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel eye - muscle medial, donor2_CNhs13443_10299-104H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10299-104H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleMedialD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleMedialDonor2_CNhs13443_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2\ urlLabel FANTOM5 Details:\ EyeMuscleMedialDonor2_CNhs13443_ctss_rev EyeMuscleMedialD2- bigWig eye - muscle medial, donor2_CNhs13443_10299-104H2_reverse 0 3374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20medial%2c%20donor2.CNhs13443.10299-104H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel eye - muscle medial, donor2_CNhs13443_10299-104H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10299-104H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleMedialD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleMedialDonor2_CNhs13443_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2\ urlLabel FANTOM5 Details:\ EyeMuscleSuperiorDonor2_CNhs13441_tpm_fwd EyeMuscleSuperiorD2+ bigWig eye - muscle superior, donor2_CNhs13441_10297-104G9_forward 1 3375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20superior%2c%20donor2.CNhs13441.10297-104G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel eye - muscle superior, donor2_CNhs13441_10297-104G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10297-104G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleSuperiorD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleSuperiorDonor2_CNhs13441_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9\ urlLabel FANTOM5 Details:\ EyeMuscleSuperiorDonor2_CNhs13441_ctss_fwd EyeMuscleSuperiorD2+ bigWig eye - muscle superior, donor2_CNhs13441_10297-104G9_forward 0 3375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20superior%2c%20donor2.CNhs13441.10297-104G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel eye - muscle superior, donor2_CNhs13441_10297-104G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10297-104G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleSuperiorD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleSuperiorDonor2_CNhs13441_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9\ urlLabel FANTOM5 Details:\ EyeMuscleSuperiorDonor2_CNhs13441_tpm_rev EyeMuscleSuperiorD2- bigWig eye - muscle superior, donor2_CNhs13441_10297-104G9_reverse 1 3376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20superior%2c%20donor2.CNhs13441.10297-104G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel eye - muscle superior, donor2_CNhs13441_10297-104G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10297-104G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleSuperiorD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleSuperiorDonor2_CNhs13441_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9\ urlLabel FANTOM5 Details:\ EyeMuscleSuperiorDonor2_CNhs13441_ctss_rev EyeMuscleSuperiorD2- bigWig eye - muscle superior, donor2_CNhs13441_10297-104G9_reverse 0 3376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20superior%2c%20donor2.CNhs13441.10297-104G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel eye - muscle superior, donor2_CNhs13441_10297-104G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10297-104G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleSuperiorD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleSuperiorDonor2_CNhs13441_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9\ urlLabel FANTOM5 Details:\ EyeVitreousHumorDonor1_CNhs13440_tpm_fwd EyeVitreousHumorD1+ bigWig eye - vitreous humor, donor1_CNhs13440_10268-104D7_forward 1 3377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20vitreous%20humor%2c%20donor1.CNhs13440.10268-104D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel eye - vitreous humor, donor1_CNhs13440_10268-104D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10268-104D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeVitreousHumorD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeVitreousHumorDonor1_CNhs13440_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7\ urlLabel FANTOM5 Details:\ EyeVitreousHumorDonor1_CNhs13440_ctss_fwd EyeVitreousHumorD1+ bigWig eye - vitreous humor, donor1_CNhs13440_10268-104D7_forward 0 3377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20vitreous%20humor%2c%20donor1.CNhs13440.10268-104D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel eye - vitreous humor, donor1_CNhs13440_10268-104D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10268-104D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeVitreousHumorD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeVitreousHumorDonor1_CNhs13440_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7\ urlLabel FANTOM5 Details:\ EyeVitreousHumorDonor1_CNhs13440_tpm_rev EyeVitreousHumorD1- bigWig eye - vitreous humor, donor1_CNhs13440_10268-104D7_reverse 1 3378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20vitreous%20humor%2c%20donor1.CNhs13440.10268-104D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel eye - vitreous humor, donor1_CNhs13440_10268-104D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10268-104D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeVitreousHumorD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeVitreousHumorDonor1_CNhs13440_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7\ urlLabel FANTOM5 Details:\ EyeVitreousHumorDonor1_CNhs13440_ctss_rev EyeVitreousHumorD1- bigWig eye - vitreous humor, donor1_CNhs13440_10268-104D7_reverse 0 3378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20vitreous%20humor%2c%20donor1.CNhs13440.10268-104D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel eye - vitreous humor, donor1_CNhs13440_10268-104D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10268-104D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeVitreousHumorD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeVitreousHumorDonor1_CNhs13440_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7\ urlLabel FANTOM5 Details:\ FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_tpm_fwd FingernailD2+ bigWig Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_forward 1 3379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fingernail%20%28including%20nail%20plate%2c%20eponychium%20and%20hyponychium%29%2c%20donor2.CNhs13445.10301-104H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10301-104H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FingernailD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4\ urlLabel FANTOM5 Details:\ FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_ctss_fwd FingernailD2+ bigWig Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_forward 0 3379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fingernail%20%28including%20nail%20plate%2c%20eponychium%20and%20hyponychium%29%2c%20donor2.CNhs13445.10301-104H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10301-104H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FingernailD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4\ urlLabel FANTOM5 Details:\ FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_tpm_rev FingernailD2- bigWig Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_reverse 1 3380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fingernail%20%28including%20nail%20plate%2c%20eponychium%20and%20hyponychium%29%2c%20donor2.CNhs13445.10301-104H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10301-104H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FingernailD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4\ urlLabel FANTOM5 Details:\ FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_ctss_rev FingernailD2- bigWig Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_reverse 0 3380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fingernail%20%28including%20nail%20plate%2c%20eponychium%20and%20hyponychium%29%2c%20donor2.CNhs13445.10301-104H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10301-104H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FingernailD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4\ urlLabel FANTOM5 Details:\ FrontalLobeAdultPool1_CNhs10647_tpm_fwd FrontalLobeAdultPl1+ bigWig frontal lobe, adult, pool1_CNhs10647_10040-101F4_forward 1 3381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/frontal%20lobe%2c%20adult%2c%20pool1.CNhs10647.10040-101F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel frontal lobe, adult, pool1_CNhs10647_10040-101F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10040-101F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FrontalLobeAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track FrontalLobeAdultPool1_CNhs10647_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4\ urlLabel FANTOM5 Details:\ FrontalLobeAdultPool1_CNhs10647_ctss_fwd FrontalLobeAdultPl1+ bigWig frontal lobe, adult, pool1_CNhs10647_10040-101F4_forward 0 3381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/frontal%20lobe%2c%20adult%2c%20pool1.CNhs10647.10040-101F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel frontal lobe, adult, pool1_CNhs10647_10040-101F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10040-101F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FrontalLobeAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track FrontalLobeAdultPool1_CNhs10647_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4\ urlLabel FANTOM5 Details:\ FrontalLobeAdultPool1_CNhs10647_tpm_rev FrontalLobeAdultPl1- bigWig frontal lobe, adult, pool1_CNhs10647_10040-101F4_reverse 1 3382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/frontal%20lobe%2c%20adult%2c%20pool1.CNhs10647.10040-101F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel frontal lobe, adult, pool1_CNhs10647_10040-101F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10040-101F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FrontalLobeAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track FrontalLobeAdultPool1_CNhs10647_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4\ urlLabel FANTOM5 Details:\ FrontalLobeAdultPool1_CNhs10647_ctss_rev FrontalLobeAdultPl1- bigWig frontal lobe, adult, pool1_CNhs10647_10040-101F4_reverse 0 3382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/frontal%20lobe%2c%20adult%2c%20pool1.CNhs10647.10040-101F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel frontal lobe, adult, pool1_CNhs10647_10040-101F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10040-101F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FrontalLobeAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track FrontalLobeAdultPool1_CNhs10647_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4\ urlLabel FANTOM5 Details:\ GallBladderAdult_CNhs12848_tpm_fwd GallBladderAdult+ bigWig gall bladder, adult_CNhs12848_10198-103E9_forward 1 3383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10198-103E9 regulation 0 bigDataUrl 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shortLabel GallBladderAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GallBladderAdult_CNhs12848_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10198-103E9\ urlLabel FANTOM5 Details:\ GallBladderAdult_CNhs12848_tpm_rev GallBladderAdult- bigWig gall bladder, adult_CNhs12848_10198-103E9_reverse 1 3384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10198-103E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gall%20bladder%2c%20adult.CNhs12848.10198-103E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel gall bladder, adult_CNhs12848_10198-103E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10198-103E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GallBladderAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GallBladderAdult_CNhs12848_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10198-103E9\ urlLabel FANTOM5 Details:\ GallBladderAdult_CNhs12848_ctss_rev GallBladderAdult- 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donor10196_CNhs13801_10175-103C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10175-103C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusAdultDonor10196_CNhs13801_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10196_CNhs13801_tpm_rev GlobusPallidusAdultD10196- bigWig globus pallidus - adult, donor10196_CNhs13801_10175-103C4_reverse 1 3386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%20-%20adult%2c%20donor10196.CNhs13801.10175-103C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel globus pallidus - adult, donor10196_CNhs13801_10175-103C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10175-103C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusAdultDonor10196_CNhs13801_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10196_CNhs13801_ctss_rev GlobusPallidusAdultD10196- bigWig globus pallidus - adult, donor10196_CNhs13801_10175-103C4_reverse 0 3386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%20-%20adult%2c%20donor10196.CNhs13801.10175-103C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel globus pallidus - adult, donor10196_CNhs13801_10175-103C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10175-103C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusAdultDonor10196_CNhs13801_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10252_CNhs12319_tpm_fwd GlobusPallidusAdultD10252+ bigWig globus pallidus, adult, donor10252_CNhs12319_10161-103A8_forward 1 3387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20adult%2c%20donor10252.CNhs12319.10161-103A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel globus pallidus, adult, donor10252_CNhs12319_10161-103A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10161-103A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusAdultDonor10252_CNhs12319_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10252_CNhs12319_ctss_fwd GlobusPallidusAdultD10252+ bigWig globus pallidus, adult, donor10252_CNhs12319_10161-103A8_forward 0 3387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20adult%2c%20donor10252.CNhs12319.10161-103A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel globus pallidus, adult, donor10252_CNhs12319_10161-103A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10161-103A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusAdultDonor10252_CNhs12319_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10252_CNhs12319_tpm_rev GlobusPallidusAdultD10252- bigWig globus pallidus, adult, donor10252_CNhs12319_10161-103A8_reverse 1 3388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20adult%2c%20donor10252.CNhs12319.10161-103A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel globus pallidus, adult, donor10252_CNhs12319_10161-103A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10161-103A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusAdultDonor10252_CNhs12319_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10252_CNhs12319_ctss_rev GlobusPallidusAdultD10252- bigWig globus pallidus, adult, donor10252_CNhs12319_10161-103A8_reverse 0 3388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20adult%2c%20donor10252.CNhs12319.10161-103A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel globus pallidus, adult, donor10252_CNhs12319_10161-103A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10161-103A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusAdultDonor10252_CNhs12319_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10258_CNhs14549_tpm_fwd GlobusPallidusAdultD10258+ bigWig globus pallidus, adult, donor10258_CNhs14549_10367-105F7_forward 1 3389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20adult%2c%20donor10258.CNhs14549.10367-105F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel globus pallidus, adult, donor10258_CNhs14549_10367-105F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10367-105F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusAdultDonor10258_CNhs14549_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10258_CNhs14549_ctss_fwd GlobusPallidusAdultD10258+ bigWig globus pallidus, adult, donor10258_CNhs14549_10367-105F7_forward 0 3389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20adult%2c%20donor10258.CNhs14549.10367-105F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel globus pallidus, adult, donor10258_CNhs14549_10367-105F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10367-105F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusAdultDonor10258_CNhs14549_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10258_CNhs14549_tpm_rev GlobusPallidusAdultD10258- bigWig globus pallidus, adult, donor10258_CNhs14549_10367-105F7_reverse 1 3390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20adult%2c%20donor10258.CNhs14549.10367-105F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel globus pallidus, adult, donor10258_CNhs14549_10367-105F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10367-105F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusAdultDonor10258_CNhs14549_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10258_CNhs14549_ctss_rev GlobusPallidusAdultD10258- bigWig globus pallidus, adult, donor10258_CNhs14549_10367-105F7_reverse 0 3390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20adult%2c%20donor10258.CNhs14549.10367-105F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel globus pallidus, adult, donor10258_CNhs14549_10367-105F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10367-105F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusAdultDonor10258_CNhs14549_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7\ urlLabel FANTOM5 Details:\ GlobusPallidusNewbornDonor10223_CNhs14082_tpm_fwd GlobusPallidusNbD10223+ bigWig globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_forward 1 3391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20newborn%2c%20donor10223.CNhs14082.10364-105F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10364-105F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusNewbornDonor10223_CNhs14082_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4\ urlLabel FANTOM5 Details:\ GlobusPallidusNewbornDonor10223_CNhs14082_ctss_fwd GlobusPallidusNbD10223+ bigWig globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_forward 0 3391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20newborn%2c%20donor10223.CNhs14082.10364-105F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10364-105F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusNewbornDonor10223_CNhs14082_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4\ urlLabel FANTOM5 Details:\ GlobusPallidusNewbornDonor10223_CNhs14082_tpm_rev GlobusPallidusNbD10223- bigWig globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_reverse 1 3392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20newborn%2c%20donor10223.CNhs14082.10364-105F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10364-105F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusNewbornDonor10223_CNhs14082_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4\ urlLabel FANTOM5 Details:\ GlobusPallidusNewbornDonor10223_CNhs14082_ctss_rev GlobusPallidusNbD10223- bigWig globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_reverse 0 3392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20newborn%2c%20donor10223.CNhs14082.10364-105F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10364-105F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusNewbornDonor10223_CNhs14082_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4\ urlLabel FANTOM5 Details:\ HeartAdultDiseasedDonor1_CNhs11758_tpm_fwd HeartAdultDiseasedD1+ bigWig heart, adult, diseased, donor1_CNhs11758_10051-101G6_forward 1 3393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20diseased%2c%20donor1.CNhs11758.10051-101G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel heart, adult, diseased, donor1_CNhs11758_10051-101G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10051-101G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartAdultDiseasedD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartAdultDiseasedDonor1_CNhs11758_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6\ urlLabel FANTOM5 Details:\ HeartAdultDiseasedDonor1_CNhs11758_ctss_fwd HeartAdultDiseasedD1+ bigWig heart, adult, diseased, donor1_CNhs11758_10051-101G6_forward 0 3393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20diseased%2c%20donor1.CNhs11758.10051-101G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel heart, adult, diseased, donor1_CNhs11758_10051-101G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10051-101G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartAdultDiseasedD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartAdultDiseasedDonor1_CNhs11758_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6\ urlLabel FANTOM5 Details:\ HeartAdultDiseasedDonor1_CNhs11758_tpm_rev HeartAdultDiseasedD1- bigWig heart, adult, diseased, donor1_CNhs11758_10051-101G6_reverse 1 3394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20diseased%2c%20donor1.CNhs11758.10051-101G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel heart, adult, diseased, donor1_CNhs11758_10051-101G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10051-101G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartAdultDiseasedD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartAdultDiseasedDonor1_CNhs11758_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6\ urlLabel FANTOM5 Details:\ HeartAdultDiseasedDonor1_CNhs11758_ctss_rev HeartAdultDiseasedD1- bigWig heart, adult, diseased, donor1_CNhs11758_10051-101G6_reverse 0 3394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20diseased%2c%20donor1.CNhs11758.10051-101G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel heart, adult, diseased, donor1_CNhs11758_10051-101G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10051-101G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartAdultDiseasedD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartAdultDiseasedDonor1_CNhs11758_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6\ urlLabel FANTOM5 Details:\ HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_tpm_fwd HeartAdultDiseasedPost-infarctionD1+ bigWig heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_forward 1 3395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20diseased%20post-infarction%2c%20donor1.CNhs11757.10050-101G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10050-101G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartAdultDiseasedPost-infarctionD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5\ urlLabel FANTOM5 Details:\ HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_ctss_fwd HeartAdultDiseasedPost-infarctionD1+ bigWig heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_forward 0 3395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20diseased%20post-infarction%2c%20donor1.CNhs11757.10050-101G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10050-101G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartAdultDiseasedPost-infarctionD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5\ urlLabel FANTOM5 Details:\ HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_tpm_rev HeartAdultDiseasedPost-infarctionD1- bigWig heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_reverse 1 3396 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20diseased%20post-infarction%2c%20donor1.CNhs11757.10050-101G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10050-101G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartAdultDiseasedPost-infarctionD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5\ urlLabel FANTOM5 Details:\ HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_ctss_rev HeartAdultDiseasedPost-infarctionD1- bigWig heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_reverse 0 3396 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20diseased%20post-infarction%2c%20donor1.CNhs11757.10050-101G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10050-101G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartAdultDiseasedPost-infarctionD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5\ urlLabel FANTOM5 Details:\ HeartAdultPool1_CNhs10621_tpm_fwd HeartAdultPl1+ bigWig heart, adult, pool1_CNhs10621_10016-101C7_forward 1 3397 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20pool1.CNhs10621.10016-101C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel heart, adult, pool1_CNhs10621_10016-101C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10016-101C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartAdultPool1_CNhs10621_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7\ urlLabel FANTOM5 Details:\ HeartAdultPool1_CNhs10621_ctss_fwd HeartAdultPl1+ bigWig heart, adult, pool1_CNhs10621_10016-101C7_forward 0 3397 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20pool1.CNhs10621.10016-101C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel heart, adult, pool1_CNhs10621_10016-101C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10016-101C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartAdultPool1_CNhs10621_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7\ urlLabel FANTOM5 Details:\ HeartAdultPool1_CNhs10621_tpm_rev HeartAdultPl1- bigWig heart, adult, pool1_CNhs10621_10016-101C7_reverse 1 3398 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20pool1.CNhs10621.10016-101C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel heart, adult, pool1_CNhs10621_10016-101C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10016-101C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartAdultPool1_CNhs10621_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7\ urlLabel FANTOM5 Details:\ HeartAdultPool1_CNhs10621_ctss_rev HeartAdultPl1- bigWig heart, adult, pool1_CNhs10621_10016-101C7_reverse 0 3398 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20pool1.CNhs10621.10016-101C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel heart, adult, pool1_CNhs10621_10016-101C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10016-101C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartAdultPool1_CNhs10621_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7\ urlLabel FANTOM5 Details:\ HeartFetalPool1_CNhs10653_tpm_fwd HeartFetalPl1+ bigWig heart, fetal, pool1_CNhs10653_10046-101G1_forward 1 3399 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20fetal%2c%20pool1.CNhs10653.10046-101G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel heart, fetal, pool1_CNhs10653_10046-101G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10046-101G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartFetalPool1_CNhs10653_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1\ urlLabel FANTOM5 Details:\ HeartFetalPool1_CNhs10653_ctss_fwd HeartFetalPl1+ bigWig heart, fetal, pool1_CNhs10653_10046-101G1_forward 0 3399 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20fetal%2c%20pool1.CNhs10653.10046-101G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel heart, fetal, pool1_CNhs10653_10046-101G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10046-101G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartFetalPool1_CNhs10653_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1\ urlLabel FANTOM5 Details:\ HeartFetalPool1_CNhs10653_tpm_rev HeartFetalPl1- bigWig heart, fetal, pool1_CNhs10653_10046-101G1_reverse 1 3400 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20fetal%2c%20pool1.CNhs10653.10046-101G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel heart, fetal, pool1_CNhs10653_10046-101G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10046-101G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartFetalPool1_CNhs10653_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1\ urlLabel FANTOM5 Details:\ HeartFetalPool1_CNhs10653_ctss_rev HeartFetalPl1- bigWig heart, fetal, pool1_CNhs10653_10046-101G1_reverse 0 3400 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20fetal%2c%20pool1.CNhs10653.10046-101G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel heart, fetal, pool1_CNhs10653_10046-101G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10046-101G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartFetalPool1_CNhs10653_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1\ urlLabel FANTOM5 Details:\ HeartMitralValveAdult_CNhs12855_tpm_fwd HeartMitralValveAdult+ bigWig heart - mitral valve, adult_CNhs12855_10205-103F7_forward 1 3401 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20mitral%20valve%2c%20adult.CNhs12855.10205-103F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel heart - mitral valve, adult_CNhs12855_10205-103F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10205-103F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartMitralValveAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartMitralValveAdult_CNhs12855_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7\ urlLabel FANTOM5 Details:\ HeartMitralValveAdult_CNhs12855_ctss_fwd HeartMitralValveAdult+ bigWig heart - mitral valve, adult_CNhs12855_10205-103F7_forward 0 3401 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20mitral%20valve%2c%20adult.CNhs12855.10205-103F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel heart - mitral valve, adult_CNhs12855_10205-103F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10205-103F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartMitralValveAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartMitralValveAdult_CNhs12855_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7\ urlLabel FANTOM5 Details:\ HeartMitralValveAdult_CNhs12855_tpm_rev HeartMitralValveAdult- bigWig heart - mitral valve, adult_CNhs12855_10205-103F7_reverse 1 3402 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20mitral%20valve%2c%20adult.CNhs12855.10205-103F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel heart - mitral valve, adult_CNhs12855_10205-103F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10205-103F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartMitralValveAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartMitralValveAdult_CNhs12855_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7\ urlLabel FANTOM5 Details:\ HeartMitralValveAdult_CNhs12855_ctss_rev HeartMitralValveAdult- bigWig heart - mitral valve, adult_CNhs12855_10205-103F7_reverse 0 3402 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20mitral%20valve%2c%20adult.CNhs12855.10205-103F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel heart - mitral valve, adult_CNhs12855_10205-103F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10205-103F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartMitralValveAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartMitralValveAdult_CNhs12855_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7\ urlLabel FANTOM5 Details:\ HeartPulmonicValveAdult_CNhs12856_tpm_fwd HeartPulmonicValveAdult+ bigWig heart - pulmonic valve, adult_CNhs12856_10206-103F8_forward 1 3403 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20pulmonic%20valve%2c%20adult.CNhs12856.10206-103F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel heart - pulmonic valve, adult_CNhs12856_10206-103F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10206-103F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartPulmonicValveAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartPulmonicValveAdult_CNhs12856_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8\ urlLabel FANTOM5 Details:\ HeartPulmonicValveAdult_CNhs12856_ctss_fwd HeartPulmonicValveAdult+ bigWig heart - pulmonic valve, adult_CNhs12856_10206-103F8_forward 0 3403 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20pulmonic%20valve%2c%20adult.CNhs12856.10206-103F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel heart - pulmonic valve, adult_CNhs12856_10206-103F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10206-103F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartPulmonicValveAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartPulmonicValveAdult_CNhs12856_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8\ urlLabel FANTOM5 Details:\ HeartPulmonicValveAdult_CNhs12856_tpm_rev HeartPulmonicValveAdult- bigWig heart - pulmonic valve, adult_CNhs12856_10206-103F8_reverse 1 3404 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20pulmonic%20valve%2c%20adult.CNhs12856.10206-103F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel heart - pulmonic valve, adult_CNhs12856_10206-103F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10206-103F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartPulmonicValveAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartPulmonicValveAdult_CNhs12856_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8\ urlLabel FANTOM5 Details:\ HeartPulmonicValveAdult_CNhs12856_ctss_rev HeartPulmonicValveAdult- bigWig heart - pulmonic valve, adult_CNhs12856_10206-103F8_reverse 0 3404 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20pulmonic%20valve%2c%20adult.CNhs12856.10206-103F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel heart - pulmonic valve, adult_CNhs12856_10206-103F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10206-103F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartPulmonicValveAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartPulmonicValveAdult_CNhs12856_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8\ urlLabel FANTOM5 Details:\ HeartTricuspidValveAdult_CNhs12857_tpm_fwd HeartTricuspidValveAdult+ bigWig heart - tricuspid valve, adult_CNhs12857_10207-103F9_forward 1 3405 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20tricuspid%20valve%2c%20adult.CNhs12857.10207-103F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel heart - tricuspid valve, adult_CNhs12857_10207-103F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10207-103F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartTricuspidValveAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartTricuspidValveAdult_CNhs12857_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9\ urlLabel FANTOM5 Details:\ HeartTricuspidValveAdult_CNhs12857_ctss_fwd HeartTricuspidValveAdult+ bigWig heart - tricuspid valve, adult_CNhs12857_10207-103F9_forward 0 3405 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20tricuspid%20valve%2c%20adult.CNhs12857.10207-103F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel heart - tricuspid valve, adult_CNhs12857_10207-103F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10207-103F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartTricuspidValveAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartTricuspidValveAdult_CNhs12857_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9\ urlLabel FANTOM5 Details:\ HeartTricuspidValveAdult_CNhs12857_tpm_rev HeartTricuspidValveAdult- bigWig heart - tricuspid valve, adult_CNhs12857_10207-103F9_reverse 1 3406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20tricuspid%20valve%2c%20adult.CNhs12857.10207-103F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel heart - tricuspid valve, adult_CNhs12857_10207-103F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10207-103F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartTricuspidValveAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartTricuspidValveAdult_CNhs12857_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9\ urlLabel FANTOM5 Details:\ HeartTricuspidValveAdult_CNhs12857_ctss_rev HeartTricuspidValveAdult- bigWig heart - tricuspid valve, adult_CNhs12857_10207-103F9_reverse 0 3406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20tricuspid%20valve%2c%20adult.CNhs12857.10207-103F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel heart - tricuspid valve, adult_CNhs12857_10207-103F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10207-103F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartTricuspidValveAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartTricuspidValveAdult_CNhs12857_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10196_CNhs13795_tpm_fwd HippocampusAdultD10196+ bigWig hippocampus - adult, donor10196_CNhs13795_10169-103B7_forward 1 3407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%20-%20adult%2c%20donor10196.CNhs13795.10169-103B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hippocampus - adult, donor10196_CNhs13795_10169-103B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10169-103B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusAdultDonor10196_CNhs13795_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10196_CNhs13795_ctss_fwd HippocampusAdultD10196+ bigWig hippocampus - adult, donor10196_CNhs13795_10169-103B7_forward 0 3407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%20-%20adult%2c%20donor10196.CNhs13795.10169-103B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hippocampus - adult, donor10196_CNhs13795_10169-103B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10169-103B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusAdultDonor10196_CNhs13795_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10196_CNhs13795_tpm_rev HippocampusAdultD10196- bigWig hippocampus - adult, donor10196_CNhs13795_10169-103B7_reverse 1 3408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%20-%20adult%2c%20donor10196.CNhs13795.10169-103B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hippocampus - adult, donor10196_CNhs13795_10169-103B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10169-103B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusAdultDonor10196_CNhs13795_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10196_CNhs13795_ctss_rev HippocampusAdultD10196- bigWig hippocampus - adult, donor10196_CNhs13795_10169-103B7_reverse 0 3408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%20-%20adult%2c%20donor10196.CNhs13795.10169-103B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hippocampus - adult, donor10196_CNhs13795_10169-103B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10169-103B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusAdultDonor10196_CNhs13795_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10252_CNhs12312_tpm_fwd HippocampusAdultD10252+ bigWig hippocampus, adult, donor10252_CNhs12312_10153-102I9_forward 1 3409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20adult%2c%20donor10252.CNhs12312.10153-102I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hippocampus, adult, donor10252_CNhs12312_10153-102I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10153-102I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusAdultDonor10252_CNhs12312_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10252_CNhs12312_ctss_fwd HippocampusAdultD10252+ bigWig hippocampus, adult, donor10252_CNhs12312_10153-102I9_forward 0 3409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20adult%2c%20donor10252.CNhs12312.10153-102I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hippocampus, adult, donor10252_CNhs12312_10153-102I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10153-102I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusAdultDonor10252_CNhs12312_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10252_CNhs12312_tpm_rev HippocampusAdultD10252- bigWig hippocampus, adult, donor10252_CNhs12312_10153-102I9_reverse 1 3410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20adult%2c%20donor10252.CNhs12312.10153-102I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hippocampus, adult, donor10252_CNhs12312_10153-102I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10153-102I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusAdultDonor10252_CNhs12312_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10252_CNhs12312_ctss_rev HippocampusAdultD10252- bigWig hippocampus, adult, donor10252_CNhs12312_10153-102I9_reverse 0 3410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20adult%2c%20donor10252.CNhs12312.10153-102I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hippocampus, adult, donor10252_CNhs12312_10153-102I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10153-102I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusAdultDonor10252_CNhs12312_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10258_CNhs14227_tpm_fwd HippocampusAdultD10258+ bigWig hippocampus, adult, donor10258_CNhs14227_10374-105G5_forward 1 3411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20adult%2c%20donor10258.CNhs14227.10374-105G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hippocampus, adult, donor10258_CNhs14227_10374-105G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10374-105G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusAdultDonor10258_CNhs14227_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10258_CNhs14227_ctss_fwd HippocampusAdultD10258+ bigWig hippocampus, adult, donor10258_CNhs14227_10374-105G5_forward 0 3411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20adult%2c%20donor10258.CNhs14227.10374-105G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hippocampus, adult, donor10258_CNhs14227_10374-105G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10374-105G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusAdultDonor10258_CNhs14227_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10258_CNhs14227_tpm_rev HippocampusAdultD10258- bigWig hippocampus, adult, donor10258_CNhs14227_10374-105G5_reverse 1 3412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20adult%2c%20donor10258.CNhs14227.10374-105G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hippocampus, adult, donor10258_CNhs14227_10374-105G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10374-105G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusAdultDonor10258_CNhs14227_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10258_CNhs14227_ctss_rev HippocampusAdultD10258- bigWig hippocampus, adult, donor10258_CNhs14227_10374-105G5_reverse 0 3412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20adult%2c%20donor10258.CNhs14227.10374-105G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hippocampus, adult, donor10258_CNhs14227_10374-105G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10374-105G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusAdultDonor10258_CNhs14227_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5\ urlLabel FANTOM5 Details:\ HippocampusNewbornDonor10223_CNhs14081_tpm_fwd HippocampusNbD10223+ bigWig hippocampus, newborn, donor10223_CNhs14081_10363-105F3_forward 1 3413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20newborn%2c%20donor10223.CNhs14081.10363-105F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hippocampus, newborn, donor10223_CNhs14081_10363-105F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10363-105F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusNewbornDonor10223_CNhs14081_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3\ urlLabel FANTOM5 Details:\ HippocampusNewbornDonor10223_CNhs14081_ctss_fwd HippocampusNbD10223+ bigWig hippocampus, newborn, donor10223_CNhs14081_10363-105F3_forward 0 3413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20newborn%2c%20donor10223.CNhs14081.10363-105F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hippocampus, newborn, donor10223_CNhs14081_10363-105F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10363-105F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusNewbornDonor10223_CNhs14081_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3\ urlLabel FANTOM5 Details:\ HippocampusNewbornDonor10223_CNhs14081_tpm_rev HippocampusNbD10223- bigWig hippocampus, newborn, donor10223_CNhs14081_10363-105F3_reverse 1 3414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20newborn%2c%20donor10223.CNhs14081.10363-105F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hippocampus, newborn, donor10223_CNhs14081_10363-105F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10363-105F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusNewbornDonor10223_CNhs14081_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3\ urlLabel FANTOM5 Details:\ HippocampusNewbornDonor10223_CNhs14081_ctss_rev HippocampusNbD10223- bigWig hippocampus, newborn, donor10223_CNhs14081_10363-105F3_reverse 0 3414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20newborn%2c%20donor10223.CNhs14081.10363-105F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hippocampus, newborn, donor10223_CNhs14081_10363-105F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10363-105F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusNewbornDonor10223_CNhs14081_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3\ urlLabel FANTOM5 Details:\ InsulaAdultPool1_CNhs10646_tpm_fwd InsulaAdultPl1+ bigWig insula, adult, pool1_CNhs10646_10039-101F3_forward 1 3415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/insula%2c%20adult%2c%20pool1.CNhs10646.10039-101F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel insula, adult, pool1_CNhs10646_10039-101F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10039-101F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel InsulaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track InsulaAdultPool1_CNhs10646_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3\ urlLabel FANTOM5 Details:\ InsulaAdultPool1_CNhs10646_ctss_fwd InsulaAdultPl1+ bigWig insula, adult, pool1_CNhs10646_10039-101F3_forward 0 3415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/insula%2c%20adult%2c%20pool1.CNhs10646.10039-101F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel insula, adult, pool1_CNhs10646_10039-101F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10039-101F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel InsulaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track InsulaAdultPool1_CNhs10646_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3\ urlLabel FANTOM5 Details:\ InsulaAdultPool1_CNhs10646_tpm_rev InsulaAdultPl1- bigWig insula, adult, pool1_CNhs10646_10039-101F3_reverse 1 3416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/insula%2c%20adult%2c%20pool1.CNhs10646.10039-101F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel insula, adult, pool1_CNhs10646_10039-101F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10039-101F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel InsulaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track InsulaAdultPool1_CNhs10646_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3\ urlLabel FANTOM5 Details:\ InsulaAdultPool1_CNhs10646_ctss_rev InsulaAdultPl1- bigWig insula, adult, pool1_CNhs10646_10039-101F3_reverse 0 3416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/insula%2c%20adult%2c%20pool1.CNhs10646.10039-101F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel insula, adult, pool1_CNhs10646_10039-101F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10039-101F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel InsulaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track InsulaAdultPool1_CNhs10646_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3\ urlLabel FANTOM5 Details:\ KidneyAdultPool1_CNhs10622_tpm_fwd KidneyAdultPl1+ bigWig kidney, adult, pool1_CNhs10622_10017-101C8_forward 1 3417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/kidney%2c%20adult%2c%20pool1.CNhs10622.10017-101C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel kidney, adult, pool1_CNhs10622_10017-101C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10017-101C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KidneyAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track KidneyAdultPool1_CNhs10622_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8\ urlLabel FANTOM5 Details:\ KidneyAdultPool1_CNhs10622_ctss_fwd KidneyAdultPl1+ bigWig kidney, adult, pool1_CNhs10622_10017-101C8_forward 0 3417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/kidney%2c%20adult%2c%20pool1.CNhs10622.10017-101C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel kidney, adult, pool1_CNhs10622_10017-101C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10017-101C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KidneyAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track KidneyAdultPool1_CNhs10622_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8\ urlLabel FANTOM5 Details:\ KidneyAdultPool1_CNhs10622_tpm_rev KidneyAdultPl1- bigWig kidney, adult, pool1_CNhs10622_10017-101C8_reverse 1 3418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/kidney%2c%20adult%2c%20pool1.CNhs10622.10017-101C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel kidney, adult, pool1_CNhs10622_10017-101C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10017-101C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KidneyAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track KidneyAdultPool1_CNhs10622_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8\ urlLabel FANTOM5 Details:\ KidneyAdultPool1_CNhs10622_ctss_rev KidneyAdultPl1- bigWig kidney, adult, pool1_CNhs10622_10017-101C8_reverse 0 3418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/kidney%2c%20adult%2c%20pool1.CNhs10622.10017-101C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel kidney, adult, pool1_CNhs10622_10017-101C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10017-101C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KidneyAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track KidneyAdultPool1_CNhs10622_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8\ urlLabel FANTOM5 Details:\ KidneyFetalPool1_CNhs10652_tpm_fwd KidneyFetalPl1+ bigWig kidney, fetal, pool1_CNhs10652_10045-101F9_forward 1 3419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/kidney%2c%20fetal%2c%20pool1.CNhs10652.10045-101F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel kidney, fetal, pool1_CNhs10652_10045-101F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10045-101F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KidneyFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track KidneyFetalPool1_CNhs10652_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9\ urlLabel FANTOM5 Details:\ KidneyFetalPool1_CNhs10652_ctss_fwd KidneyFetalPl1+ bigWig kidney, fetal, pool1_CNhs10652_10045-101F9_forward 0 3419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/kidney%2c%20fetal%2c%20pool1.CNhs10652.10045-101F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel kidney, fetal, pool1_CNhs10652_10045-101F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10045-101F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KidneyFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track KidneyFetalPool1_CNhs10652_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9\ urlLabel FANTOM5 Details:\ KidneyFetalPool1_CNhs10652_tpm_rev KidneyFetalPl1- bigWig kidney, fetal, pool1_CNhs10652_10045-101F9_reverse 1 3420 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/kidney%2c%20fetal%2c%20pool1.CNhs10652.10045-101F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel kidney, fetal, pool1_CNhs10652_10045-101F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10045-101F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KidneyFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track KidneyFetalPool1_CNhs10652_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9\ urlLabel FANTOM5 Details:\ KidneyFetalPool1_CNhs10652_ctss_rev KidneyFetalPl1- bigWig kidney, fetal, pool1_CNhs10652_10045-101F9_reverse 0 3420 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/kidney%2c%20fetal%2c%20pool1.CNhs10652.10045-101F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel kidney, fetal, pool1_CNhs10652_10045-101F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10045-101F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KidneyFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track KidneyFetalPool1_CNhs10652_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9\ urlLabel FANTOM5 Details:\ LeftAtriumAdultDonor1_CNhs11790_tpm_fwd LeftAtriumAdultD1+ bigWig left atrium, adult, donor1_CNhs11790_10079-102A7_forward 1 3421 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/left%20atrium%2c%20adult%2c%20donor1.CNhs11790.10079-102A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel left atrium, adult, donor1_CNhs11790_10079-102A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10079-102A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LeftAtriumAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LeftAtriumAdultDonor1_CNhs11790_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7\ urlLabel FANTOM5 Details:\ LeftAtriumAdultDonor1_CNhs11790_ctss_fwd LeftAtriumAdultD1+ bigWig left atrium, adult, donor1_CNhs11790_10079-102A7_forward 0 3421 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/left%20atrium%2c%20adult%2c%20donor1.CNhs11790.10079-102A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel left atrium, adult, donor1_CNhs11790_10079-102A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10079-102A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LeftAtriumAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LeftAtriumAdultDonor1_CNhs11790_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7\ urlLabel FANTOM5 Details:\ LeftAtriumAdultDonor1_CNhs11790_tpm_rev LeftAtriumAdultD1- bigWig left atrium, adult, donor1_CNhs11790_10079-102A7_reverse 1 3422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/left%20atrium%2c%20adult%2c%20donor1.CNhs11790.10079-102A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel left atrium, adult, donor1_CNhs11790_10079-102A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10079-102A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LeftAtriumAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LeftAtriumAdultDonor1_CNhs11790_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7\ urlLabel FANTOM5 Details:\ LeftAtriumAdultDonor1_CNhs11790_ctss_rev LeftAtriumAdultD1- bigWig left atrium, adult, donor1_CNhs11790_10079-102A7_reverse 0 3422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/left%20atrium%2c%20adult%2c%20donor1.CNhs11790.10079-102A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel left atrium, adult, donor1_CNhs11790_10079-102A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10079-102A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LeftAtriumAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LeftAtriumAdultDonor1_CNhs11790_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7\ urlLabel FANTOM5 Details:\ LeftVentricleAdultDonor1_CNhs11789_tpm_fwd LeftVentricleAdultD1+ bigWig left ventricle, adult, donor1_CNhs11789_10078-102A6_forward 1 3423 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/left%20ventricle%2c%20adult%2c%20donor1.CNhs11789.10078-102A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel left ventricle, adult, donor1_CNhs11789_10078-102A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10078-102A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LeftVentricleAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LeftVentricleAdultDonor1_CNhs11789_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6\ urlLabel FANTOM5 Details:\ LeftVentricleAdultDonor1_CNhs11789_ctss_fwd LeftVentricleAdultD1+ bigWig left ventricle, adult, donor1_CNhs11789_10078-102A6_forward 0 3423 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/left%20ventricle%2c%20adult%2c%20donor1.CNhs11789.10078-102A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel left ventricle, adult, donor1_CNhs11789_10078-102A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10078-102A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LeftVentricleAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LeftVentricleAdultDonor1_CNhs11789_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6\ urlLabel FANTOM5 Details:\ LeftVentricleAdultDonor1_CNhs11789_tpm_rev LeftVentricleAdultD1- bigWig left ventricle, adult, donor1_CNhs11789_10078-102A6_reverse 1 3424 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/left%20ventricle%2c%20adult%2c%20donor1.CNhs11789.10078-102A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel left ventricle, adult, donor1_CNhs11789_10078-102A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10078-102A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LeftVentricleAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LeftVentricleAdultDonor1_CNhs11789_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6\ urlLabel FANTOM5 Details:\ LeftVentricleAdultDonor1_CNhs11789_ctss_rev LeftVentricleAdultD1- bigWig left ventricle, adult, donor1_CNhs11789_10078-102A6_reverse 0 3424 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/left%20ventricle%2c%20adult%2c%20donor1.CNhs11789.10078-102A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel left ventricle, adult, donor1_CNhs11789_10078-102A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10078-102A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LeftVentricleAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LeftVentricleAdultDonor1_CNhs11789_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6\ urlLabel FANTOM5 Details:\ LiverAdultPool1_CNhs10624_tpm_fwd LiverAdultPl1+ bigWig liver, adult, pool1_CNhs10624_10018-101C9_forward 1 3425 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liver%2c%20adult%2c%20pool1.CNhs10624.10018-101C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel liver, adult, pool1_CNhs10624_10018-101C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10018-101C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LiverAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LiverAdultPool1_CNhs10624_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9\ urlLabel FANTOM5 Details:\ LiverAdultPool1_CNhs10624_ctss_fwd LiverAdultPl1+ bigWig liver, adult, pool1_CNhs10624_10018-101C9_forward 0 3425 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liver%2c%20adult%2c%20pool1.CNhs10624.10018-101C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel liver, adult, pool1_CNhs10624_10018-101C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10018-101C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LiverAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LiverAdultPool1_CNhs10624_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9\ urlLabel FANTOM5 Details:\ LiverAdultPool1_CNhs10624_tpm_rev LiverAdultPl1- bigWig liver, adult, pool1_CNhs10624_10018-101C9_reverse 1 3426 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liver%2c%20adult%2c%20pool1.CNhs10624.10018-101C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel liver, adult, pool1_CNhs10624_10018-101C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10018-101C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LiverAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LiverAdultPool1_CNhs10624_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9\ urlLabel FANTOM5 Details:\ LiverAdultPool1_CNhs10624_ctss_rev LiverAdultPl1- bigWig liver, adult, pool1_CNhs10624_10018-101C9_reverse 0 3426 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liver%2c%20adult%2c%20pool1.CNhs10624.10018-101C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel liver, adult, pool1_CNhs10624_10018-101C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10018-101C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LiverAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LiverAdultPool1_CNhs10624_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9\ urlLabel FANTOM5 Details:\ LiverFetalPool1_CNhs11798_tpm_fwd LiverFetalPl1+ bigWig liver, fetal, pool1_CNhs11798_10086-102B5_forward 1 3427 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liver%2c%20fetal%2c%20pool1.CNhs11798.10086-102B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel liver, fetal, pool1_CNhs11798_10086-102B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10086-102B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LiverFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LiverFetalPool1_CNhs11798_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5\ urlLabel FANTOM5 Details:\ LiverFetalPool1_CNhs11798_ctss_fwd LiverFetalPl1+ bigWig liver, fetal, pool1_CNhs11798_10086-102B5_forward 0 3427 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liver%2c%20fetal%2c%20pool1.CNhs11798.10086-102B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel liver, fetal, pool1_CNhs11798_10086-102B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10086-102B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LiverFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LiverFetalPool1_CNhs11798_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5\ urlLabel FANTOM5 Details:\ LiverFetalPool1_CNhs11798_tpm_rev LiverFetalPl1- bigWig liver, fetal, pool1_CNhs11798_10086-102B5_reverse 1 3428 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liver%2c%20fetal%2c%20pool1.CNhs11798.10086-102B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel liver, fetal, pool1_CNhs11798_10086-102B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10086-102B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LiverFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LiverFetalPool1_CNhs11798_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5\ urlLabel FANTOM5 Details:\ LiverFetalPool1_CNhs11798_ctss_rev LiverFetalPl1- bigWig liver, fetal, pool1_CNhs11798_10086-102B5_reverse 0 3428 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liver%2c%20fetal%2c%20pool1.CNhs11798.10086-102B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel liver, fetal, pool1_CNhs11798_10086-102B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10086-102B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LiverFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LiverFetalPool1_CNhs11798_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10196_CNhs13808_tpm_fwd LocusCoeruleusAdultD10196+ bigWig locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_forward 1 3429 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%20-%20adult%2c%20donor10196.CNhs13808.10182-103D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10182-103D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusAdultDonor10196_CNhs13808_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10196_CNhs13808_ctss_fwd LocusCoeruleusAdultD10196+ bigWig locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_forward 0 3429 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%20-%20adult%2c%20donor10196.CNhs13808.10182-103D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10182-103D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusAdultDonor10196_CNhs13808_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10196_CNhs13808_tpm_rev LocusCoeruleusAdultD10196- bigWig locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_reverse 1 3430 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%20-%20adult%2c%20donor10196.CNhs13808.10182-103D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10182-103D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusAdultDonor10196_CNhs13808_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10196_CNhs13808_ctss_rev LocusCoeruleusAdultD10196- bigWig locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_reverse 0 3430 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%20-%20adult%2c%20donor10196.CNhs13808.10182-103D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10182-103D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusAdultDonor10196_CNhs13808_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10252_CNhs12322_tpm_fwd LocusCoeruleusAdultD10252+ bigWig locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_forward 1 3431 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10252.CNhs12322.10165-103B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10165-103B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusAdultDonor10252_CNhs12322_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10252_CNhs12322_ctss_fwd LocusCoeruleusAdultD10252+ bigWig locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_forward 0 3431 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10252.CNhs12322.10165-103B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10165-103B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusAdultDonor10252_CNhs12322_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10252_CNhs12322_tpm_rev LocusCoeruleusAdultD10252- bigWig locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_reverse 1 3432 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10252.CNhs12322.10165-103B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10165-103B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusAdultDonor10252_CNhs12322_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10252_CNhs12322_ctss_rev LocusCoeruleusAdultD10252- bigWig locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_reverse 0 3432 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10252.CNhs12322.10165-103B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10165-103B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusAdultDonor10252_CNhs12322_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10258_CNhs14550_tpm_fwd LocusCoeruleusAdultD10258+ bigWig locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_forward 1 3433 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10258.CNhs14550.10375-105G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10375-105G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusAdultDonor10258_CNhs14550_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10258_CNhs14550_ctss_fwd LocusCoeruleusAdultD10258+ bigWig locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_forward 0 3433 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10258.CNhs14550.10375-105G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10375-105G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusAdultDonor10258_CNhs14550_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10258_CNhs14550_tpm_rev LocusCoeruleusAdultD10258- bigWig locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_reverse 1 3434 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10258.CNhs14550.10375-105G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10375-105G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusAdultDonor10258_CNhs14550_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10258_CNhs14550_ctss_rev LocusCoeruleusAdultD10258- bigWig locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_reverse 0 3434 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10258.CNhs14550.10375-105G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10375-105G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusAdultDonor10258_CNhs14550_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6\ urlLabel FANTOM5 Details:\ LocusCoeruleusNewbornDonor10223_CNhs14080_tpm_fwd LocusCoeruleusNbD10223+ bigWig locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_forward 1 3435 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20newborn%2c%20donor10223.CNhs14080.10362-105F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10362-105F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusNewbornDonor10223_CNhs14080_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2\ urlLabel FANTOM5 Details:\ LocusCoeruleusNewbornDonor10223_CNhs14080_ctss_fwd LocusCoeruleusNbD10223+ bigWig locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_forward 0 3435 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20newborn%2c%20donor10223.CNhs14080.10362-105F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10362-105F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusNewbornDonor10223_CNhs14080_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2\ urlLabel FANTOM5 Details:\ LocusCoeruleusNewbornDonor10223_CNhs14080_tpm_rev LocusCoeruleusNbD10223- bigWig locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_reverse 1 3436 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20newborn%2c%20donor10223.CNhs14080.10362-105F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10362-105F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusNewbornDonor10223_CNhs14080_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2\ urlLabel FANTOM5 Details:\ LocusCoeruleusNewbornDonor10223_CNhs14080_ctss_rev LocusCoeruleusNbD10223- bigWig locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_reverse 0 3436 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20newborn%2c%20donor10223.CNhs14080.10362-105F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10362-105F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusNewbornDonor10223_CNhs14080_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2\ urlLabel FANTOM5 Details:\ LungAdultPool1_CNhs10625_tpm_fwd LungAdultPl1+ bigWig lung, adult, pool1_CNhs10625_10019-101D1_forward 1 3437 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20adult%2c%20pool1.CNhs10625.10019-101D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel lung, adult, pool1_CNhs10625_10019-101D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10019-101D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LungAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LungAdultPool1_CNhs10625_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1\ urlLabel FANTOM5 Details:\ LungAdultPool1_CNhs10625_ctss_fwd LungAdultPl1+ bigWig lung, adult, pool1_CNhs10625_10019-101D1_forward 0 3437 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20adult%2c%20pool1.CNhs10625.10019-101D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel lung, adult, pool1_CNhs10625_10019-101D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10019-101D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LungAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LungAdultPool1_CNhs10625_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1\ urlLabel FANTOM5 Details:\ LungAdultPool1_CNhs10625_tpm_rev LungAdultPl1- bigWig lung, adult, pool1_CNhs10625_10019-101D1_reverse 1 3438 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20adult%2c%20pool1.CNhs10625.10019-101D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel lung, adult, pool1_CNhs10625_10019-101D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10019-101D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LungAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LungAdultPool1_CNhs10625_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1\ urlLabel FANTOM5 Details:\ LungAdultPool1_CNhs10625_ctss_rev LungAdultPl1- bigWig lung, adult, pool1_CNhs10625_10019-101D1_reverse 0 3438 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20adult%2c%20pool1.CNhs10625.10019-101D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel lung, adult, pool1_CNhs10625_10019-101D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10019-101D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LungAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LungAdultPool1_CNhs10625_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1\ urlLabel FANTOM5 Details:\ LungFetalDonor1_CNhs11680_tpm_fwd LungFetalD1+ bigWig lung, fetal, donor1_CNhs11680_10068-101I5_forward 1 3439 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20fetal%2c%20donor1.CNhs11680.10068-101I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel lung, fetal, donor1_CNhs11680_10068-101I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10068-101I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LungFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LungFetalDonor1_CNhs11680_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5\ urlLabel FANTOM5 Details:\ LungFetalDonor1_CNhs11680_ctss_fwd LungFetalD1+ bigWig lung, fetal, donor1_CNhs11680_10068-101I5_forward 0 3439 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20fetal%2c%20donor1.CNhs11680.10068-101I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel lung, fetal, donor1_CNhs11680_10068-101I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10068-101I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LungFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LungFetalDonor1_CNhs11680_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5\ urlLabel FANTOM5 Details:\ LungFetalDonor1_CNhs11680_tpm_rev LungFetalD1- bigWig lung, fetal, donor1_CNhs11680_10068-101I5_reverse 1 3440 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20fetal%2c%20donor1.CNhs11680.10068-101I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel lung, fetal, donor1_CNhs11680_10068-101I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10068-101I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LungFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LungFetalDonor1_CNhs11680_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5\ urlLabel FANTOM5 Details:\ LungFetalDonor1_CNhs11680_ctss_rev LungFetalD1- bigWig lung, fetal, donor1_CNhs11680_10068-101I5_reverse 0 3440 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20fetal%2c%20donor1.CNhs11680.10068-101I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel lung, fetal, donor1_CNhs11680_10068-101I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10068-101I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LungFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LungFetalDonor1_CNhs11680_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5\ urlLabel FANTOM5 Details:\ LungRightLowerLobeAdultDonor1_CNhs11786_tpm_fwd LungRightLowerLobeAdultD1+ bigWig lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_forward 1 3441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20right%20lower%20lobe%2c%20adult%2c%20donor1.CNhs11786.10075-102A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10075-102A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LungRightLowerLobeAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LungRightLowerLobeAdultDonor1_CNhs11786_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3\ urlLabel FANTOM5 Details:\ LungRightLowerLobeAdultDonor1_CNhs11786_ctss_fwd LungRightLowerLobeAdultD1+ bigWig lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_forward 0 3441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20right%20lower%20lobe%2c%20adult%2c%20donor1.CNhs11786.10075-102A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10075-102A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LungRightLowerLobeAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LungRightLowerLobeAdultDonor1_CNhs11786_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3\ urlLabel FANTOM5 Details:\ LungRightLowerLobeAdultDonor1_CNhs11786_tpm_rev LungRightLowerLobeAdultD1- bigWig lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_reverse 1 3442 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20right%20lower%20lobe%2c%20adult%2c%20donor1.CNhs11786.10075-102A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10075-102A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LungRightLowerLobeAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LungRightLowerLobeAdultDonor1_CNhs11786_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3\ urlLabel FANTOM5 Details:\ LungRightLowerLobeAdultDonor1_CNhs11786_ctss_rev LungRightLowerLobeAdultD1- bigWig lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_reverse 0 3442 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20right%20lower%20lobe%2c%20adult%2c%20donor1.CNhs11786.10075-102A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10075-102A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LungRightLowerLobeAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LungRightLowerLobeAdultDonor1_CNhs11786_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3\ urlLabel FANTOM5 Details:\ LymphNodeAdultDonor1_CNhs11788_tpm_fwd LymphNodeAdultD1+ bigWig lymph node, adult, donor1_CNhs11788_10077-102A5_forward 1 3443 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lymph%20node%2c%20adult%2c%20donor1.CNhs11788.10077-102A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel lymph node, adult, donor1_CNhs11788_10077-102A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10077-102A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphNodeAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LymphNodeAdultDonor1_CNhs11788_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5\ urlLabel FANTOM5 Details:\ LymphNodeAdultDonor1_CNhs11788_ctss_fwd LymphNodeAdultD1+ bigWig lymph node, adult, donor1_CNhs11788_10077-102A5_forward 0 3443 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lymph%20node%2c%20adult%2c%20donor1.CNhs11788.10077-102A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel lymph node, adult, donor1_CNhs11788_10077-102A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10077-102A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphNodeAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LymphNodeAdultDonor1_CNhs11788_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5\ urlLabel FANTOM5 Details:\ LymphNodeAdultDonor1_CNhs11788_tpm_rev LymphNodeAdultD1- bigWig lymph node, adult, donor1_CNhs11788_10077-102A5_reverse 1 3444 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lymph%20node%2c%20adult%2c%20donor1.CNhs11788.10077-102A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel lymph node, adult, donor1_CNhs11788_10077-102A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10077-102A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphNodeAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LymphNodeAdultDonor1_CNhs11788_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5\ urlLabel FANTOM5 Details:\ LymphNodeAdultDonor1_CNhs11788_ctss_rev LymphNodeAdultD1- bigWig lymph node, adult, donor1_CNhs11788_10077-102A5_reverse 0 3444 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lymph%20node%2c%20adult%2c%20donor1.CNhs11788.10077-102A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel lymph node, adult, donor1_CNhs11788_10077-102A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10077-102A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphNodeAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LymphNodeAdultDonor1_CNhs11788_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10196_CNhs13796_tpm_fwd MedialFrontalGyrusAdultD10196+ bigWig medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_forward 1 3445 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%20-%20adult%2c%20donor10196.CNhs13796.10170-103B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10170-103B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusAdultDonor10196_CNhs13796_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10196_CNhs13796_ctss_fwd MedialFrontalGyrusAdultD10196+ bigWig medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_forward 0 3445 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%20-%20adult%2c%20donor10196.CNhs13796.10170-103B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10170-103B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusAdultDonor10196_CNhs13796_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10196_CNhs13796_tpm_rev MedialFrontalGyrusAdultD10196- bigWig medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_reverse 1 3446 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%20-%20adult%2c%20donor10196.CNhs13796.10170-103B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10170-103B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusAdultDonor10196_CNhs13796_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10196_CNhs13796_ctss_rev MedialFrontalGyrusAdultD10196- bigWig medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_reverse 0 3446 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%20-%20adult%2c%20donor10196.CNhs13796.10170-103B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10170-103B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusAdultDonor10196_CNhs13796_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10252_CNhs12310_tpm_fwd MedialFrontalGyrusAdultD10252+ bigWig medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_forward 1 3447 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10252.CNhs12310.10150-102I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10150-102I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusAdultDonor10252_CNhs12310_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10252_CNhs12310_ctss_fwd MedialFrontalGyrusAdultD10252+ bigWig medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_forward 0 3447 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10252.CNhs12310.10150-102I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10150-102I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusAdultDonor10252_CNhs12310_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10252_CNhs12310_tpm_rev MedialFrontalGyrusAdultD10252- bigWig medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_reverse 1 3448 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10252.CNhs12310.10150-102I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10150-102I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusAdultDonor10252_CNhs12310_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10252_CNhs12310_ctss_rev MedialFrontalGyrusAdultD10252- bigWig medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_reverse 0 3448 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10252.CNhs12310.10150-102I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10150-102I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusAdultDonor10252_CNhs12310_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10258_CNhs14221_tpm_fwd MedialFrontalGyrusAdultD10258+ bigWig medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_forward 1 3449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10258.CNhs14221.10368-105F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10368-105F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusAdultDonor10258_CNhs14221_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10258_CNhs14221_ctss_fwd MedialFrontalGyrusAdultD10258+ bigWig medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_forward 0 3449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10258.CNhs14221.10368-105F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10368-105F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusAdultDonor10258_CNhs14221_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10258_CNhs14221_tpm_rev MedialFrontalGyrusAdultD10258- bigWig medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_reverse 1 3450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10258.CNhs14221.10368-105F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10368-105F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusAdultDonor10258_CNhs14221_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10258_CNhs14221_ctss_rev MedialFrontalGyrusAdultD10258- bigWig medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_reverse 0 3450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10258.CNhs14221.10368-105F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10368-105F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusAdultDonor10258_CNhs14221_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusNewbornDonor10223_CNhs14069_tpm_fwd MedialFrontalGyrusNbD10223+ bigWig medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_forward 1 3451 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14069.10352-105E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10352-105E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusNewbornDonor10223_CNhs14069_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusNewbornDonor10223_CNhs14069_ctss_fwd MedialFrontalGyrusNbD10223+ bigWig medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_forward 0 3451 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14069.10352-105E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10352-105E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusNewbornDonor10223_CNhs14069_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusNewbornDonor10223_CNhs14069_tpm_rev MedialFrontalGyrusNbD10223- bigWig medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_reverse 1 3452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14069.10352-105E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10352-105E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusNewbornDonor10223_CNhs14069_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusNewbornDonor10223_CNhs14069_ctss_rev MedialFrontalGyrusNbD10223- bigWig medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_reverse 0 3452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14069.10352-105E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10352-105E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusNewbornDonor10223_CNhs14069_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10196_CNhs13809_tpm_fwd MedialTemporalGyrusAdultD10196+ bigWig medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_forward 1 3453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%20-%20adult%2c%20donor10196.CNhs13809.10183-103D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10183-103D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10196_CNhs13809_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10196_CNhs13809_ctss_fwd MedialTemporalGyrusAdultD10196+ bigWig medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_forward 0 3453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%20-%20adult%2c%20donor10196.CNhs13809.10183-103D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10183-103D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10196_CNhs13809_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10196_CNhs13809_tpm_rev MedialTemporalGyrusAdultD10196- bigWig medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_reverse 1 3454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%20-%20adult%2c%20donor10196.CNhs13809.10183-103D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10183-103D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10196_CNhs13809_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10196_CNhs13809_ctss_rev MedialTemporalGyrusAdultD10196- bigWig medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_reverse 0 3454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%20-%20adult%2c%20donor10196.CNhs13809.10183-103D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10183-103D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10196_CNhs13809_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10252_CNhs12316_tpm_fwd MedialTemporalGyrusAdultD10252+ bigWig medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_forward 1 3455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10252.CNhs12316.10156-103A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10156-103A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10252_CNhs12316_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10252_CNhs12316_ctss_fwd MedialTemporalGyrusAdultD10252+ bigWig medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_forward 0 3455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10252.CNhs12316.10156-103A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10156-103A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10252_CNhs12316_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10252_CNhs12316_tpm_rev MedialTemporalGyrusAdultD10252- bigWig medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_reverse 1 3456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10252.CNhs12316.10156-103A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10156-103A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10252_CNhs12316_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10252_CNhs12316_ctss_rev MedialTemporalGyrusAdultD10252- bigWig medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_reverse 0 3456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10252.CNhs12316.10156-103A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10156-103A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10252_CNhs12316_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_tpm_fwd MedialTemporalGyrusAdultD10258Tr1+ bigWig medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_forward 1 3457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14229.10376-105G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10258Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_ctss_fwd MedialTemporalGyrusAdultD10258Tr1+ bigWig medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_forward 0 3457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14229.10376-105G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10258Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_tpm_rev MedialTemporalGyrusAdultD10258Tr1- bigWig medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_reverse 1 3458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14229.10376-105G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10258Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_ctss_rev MedialTemporalGyrusAdultD10258Tr1- bigWig medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_reverse 0 3458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14229.10376-105G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10258Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_tpm_fwd MedialTemporalGyrusAdultD10258Tr2+ bigWig medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_forward 1 3459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14552.10376-105G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10258Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_ctss_fwd MedialTemporalGyrusAdultD10258Tr2+ bigWig medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_forward 0 3459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14552.10376-105G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10258Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_tpm_rev MedialTemporalGyrusAdultD10258Tr2- bigWig medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_reverse 1 3460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14552.10376-105G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10258Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_ctss_rev MedialTemporalGyrusAdultD10258Tr2- bigWig medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_reverse 0 3460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14552.10376-105G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10258Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusNewbornDonor10223_CNhs14070_tpm_fwd MedialTemporalGyrusNbD10223+ bigWig medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_forward 1 3461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14070.10353-105E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10353-105E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusNewbornDonor10223_CNhs14070_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusNewbornDonor10223_CNhs14070_ctss_fwd MedialTemporalGyrusNbD10223+ bigWig medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_forward 0 3461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14070.10353-105E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10353-105E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusNewbornDonor10223_CNhs14070_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusNewbornDonor10223_CNhs14070_tpm_rev MedialTemporalGyrusNbD10223- bigWig medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_reverse 1 3462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14070.10353-105E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10353-105E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusNewbornDonor10223_CNhs14070_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusNewbornDonor10223_CNhs14070_ctss_rev MedialTemporalGyrusNbD10223- bigWig medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_reverse 0 3462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14070.10353-105E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10353-105E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusNewbornDonor10223_CNhs14070_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultDonor10196_CNhs13800_tpm_fwd MedullaOblongataAdultD10196+ bigWig medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_forward 1 3463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%20-%20adult%2c%20donor10196.CNhs13800.10174-103C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10174-103C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataAdultDonor10196_CNhs13800_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultDonor10196_CNhs13800_ctss_fwd MedullaOblongataAdultD10196+ bigWig medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_forward 0 3463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%20-%20adult%2c%20donor10196.CNhs13800.10174-103C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10174-103C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataAdultDonor10196_CNhs13800_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultDonor10196_CNhs13800_tpm_rev MedullaOblongataAdultD10196- bigWig medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_reverse 1 3464 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%20-%20adult%2c%20donor10196.CNhs13800.10174-103C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10174-103C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataAdultDonor10196_CNhs13800_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultDonor10196_CNhs13800_ctss_rev MedullaOblongataAdultD10196- bigWig medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_reverse 0 3464 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%20-%20adult%2c%20donor10196.CNhs13800.10174-103C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10174-103C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataAdultDonor10196_CNhs13800_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultDonor10252_CNhs12315_tpm_fwd MedullaOblongataAdultD10252+ bigWig medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_forward 1 3465 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20adult%2c%20donor10252.CNhs12315.10155-103A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10155-103A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataAdultDonor10252_CNhs12315_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultDonor10252_CNhs12315_ctss_fwd MedullaOblongataAdultD10252+ bigWig medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_forward 0 3465 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20adult%2c%20donor10252.CNhs12315.10155-103A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10155-103A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataAdultDonor10252_CNhs12315_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultDonor10252_CNhs12315_tpm_rev MedullaOblongataAdultD10252- bigWig medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_reverse 1 3466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20adult%2c%20donor10252.CNhs12315.10155-103A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10155-103A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataAdultDonor10252_CNhs12315_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultDonor10252_CNhs12315_ctss_rev MedullaOblongataAdultD10252- bigWig medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_reverse 0 3466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20adult%2c%20donor10252.CNhs12315.10155-103A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10155-103A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataAdultDonor10252_CNhs12315_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultPool1_CNhs10645_tpm_fwd MedullaOblongataAdultPl1+ bigWig medulla oblongata, adult, pool1_CNhs10645_10038-101F2_forward 1 3467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20adult%2c%20pool1.CNhs10645.10038-101F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medulla oblongata, adult, pool1_CNhs10645_10038-101F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10038-101F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataAdultPool1_CNhs10645_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultPool1_CNhs10645_ctss_fwd MedullaOblongataAdultPl1+ bigWig medulla oblongata, adult, pool1_CNhs10645_10038-101F2_forward 0 3467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20adult%2c%20pool1.CNhs10645.10038-101F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medulla oblongata, adult, pool1_CNhs10645_10038-101F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10038-101F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataAdultPool1_CNhs10645_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultPool1_CNhs10645_tpm_rev MedullaOblongataAdultPl1- bigWig medulla oblongata, adult, pool1_CNhs10645_10038-101F2_reverse 1 3468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20adult%2c%20pool1.CNhs10645.10038-101F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medulla oblongata, adult, pool1_CNhs10645_10038-101F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10038-101F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataAdultPool1_CNhs10645_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultPool1_CNhs10645_ctss_rev MedullaOblongataAdultPl1- bigWig medulla oblongata, adult, pool1_CNhs10645_10038-101F2_reverse 0 3468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20adult%2c%20pool1.CNhs10645.10038-101F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medulla oblongata, adult, pool1_CNhs10645_10038-101F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10038-101F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataAdultPool1_CNhs10645_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2\ urlLabel FANTOM5 Details:\ MedullaOblongataNewbornDonor10223_CNhs14079_tpm_fwd MedullaOblongataNbD10223+ bigWig medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_forward 1 3469 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20newborn%2c%20donor10223.CNhs14079.10361-105F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10361-105F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataNewbornDonor10223_CNhs14079_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1\ urlLabel FANTOM5 Details:\ MedullaOblongataNewbornDonor10223_CNhs14079_ctss_fwd MedullaOblongataNbD10223+ bigWig medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_forward 0 3469 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20newborn%2c%20donor10223.CNhs14079.10361-105F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10361-105F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataNewbornDonor10223_CNhs14079_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1\ urlLabel FANTOM5 Details:\ MedullaOblongataNewbornDonor10223_CNhs14079_tpm_rev MedullaOblongataNbD10223- bigWig medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_reverse 1 3470 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20newborn%2c%20donor10223.CNhs14079.10361-105F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10361-105F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataNewbornDonor10223_CNhs14079_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1\ urlLabel FANTOM5 Details:\ MedullaOblongataNewbornDonor10223_CNhs14079_ctss_rev MedullaOblongataNbD10223- bigWig medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_reverse 0 3470 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20newborn%2c%20donor10223.CNhs14079.10361-105F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10361-105F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataNewbornDonor10223_CNhs14079_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1\ urlLabel FANTOM5 Details:\ NucleusAccumbensAdultPool1_CNhs10644_tpm_fwd NucleusAccumbensAdultPl1+ bigWig nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_forward 1 3471 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nucleus%20accumbens%2c%20adult%2c%20pool1.CNhs10644.10037-101F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10037-101F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NucleusAccumbensAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track NucleusAccumbensAdultPool1_CNhs10644_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1\ urlLabel FANTOM5 Details:\ NucleusAccumbensAdultPool1_CNhs10644_ctss_fwd NucleusAccumbensAdultPl1+ bigWig nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_forward 0 3471 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nucleus%20accumbens%2c%20adult%2c%20pool1.CNhs10644.10037-101F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10037-101F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NucleusAccumbensAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track NucleusAccumbensAdultPool1_CNhs10644_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1\ urlLabel FANTOM5 Details:\ NucleusAccumbensAdultPool1_CNhs10644_tpm_rev NucleusAccumbensAdultPl1- bigWig nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_reverse 1 3472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nucleus%20accumbens%2c%20adult%2c%20pool1.CNhs10644.10037-101F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10037-101F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NucleusAccumbensAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track NucleusAccumbensAdultPool1_CNhs10644_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1\ urlLabel FANTOM5 Details:\ NucleusAccumbensAdultPool1_CNhs10644_ctss_rev NucleusAccumbensAdultPl1- bigWig nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_reverse 0 3472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nucleus%20accumbens%2c%20adult%2c%20pool1.CNhs10644.10037-101F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10037-101F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NucleusAccumbensAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track NucleusAccumbensAdultPool1_CNhs10644_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1\ urlLabel FANTOM5 Details:\ OccipitalCortexAdultDonor10196_CNhs13798_tpm_fwd OccipitalCortexAdultD10196+ bigWig occipital cortex - adult, donor10196_CNhs13798_10172-103C1_forward 1 3473 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%20-%20adult%2c%20donor10196.CNhs13798.10172-103C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel occipital cortex - adult, donor10196_CNhs13798_10172-103C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10172-103C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalCortexAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalCortexAdultDonor10196_CNhs13798_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1\ urlLabel FANTOM5 Details:\ OccipitalCortexAdultDonor10196_CNhs13798_ctss_fwd OccipitalCortexAdultD10196+ bigWig occipital cortex - adult, donor10196_CNhs13798_10172-103C1_forward 0 3473 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%20-%20adult%2c%20donor10196.CNhs13798.10172-103C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel occipital cortex - adult, donor10196_CNhs13798_10172-103C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10172-103C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalCortexAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalCortexAdultDonor10196_CNhs13798_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1\ urlLabel FANTOM5 Details:\ OccipitalCortexAdultDonor10196_CNhs13798_tpm_rev OccipitalCortexAdultD10196- bigWig occipital cortex - adult, donor10196_CNhs13798_10172-103C1_reverse 1 3474 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%20-%20adult%2c%20donor10196.CNhs13798.10172-103C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel occipital cortex - adult, donor10196_CNhs13798_10172-103C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10172-103C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalCortexAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalCortexAdultDonor10196_CNhs13798_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1\ urlLabel FANTOM5 Details:\ OccipitalCortexAdultDonor10196_CNhs13798_ctss_rev OccipitalCortexAdultD10196- bigWig occipital cortex - adult, donor10196_CNhs13798_10172-103C1_reverse 0 3474 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%20-%20adult%2c%20donor10196.CNhs13798.10172-103C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel occipital cortex - adult, donor10196_CNhs13798_10172-103C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10172-103C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalCortexAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalCortexAdultDonor10196_CNhs13798_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1\ urlLabel FANTOM5 Details:\ OccipitalCortexAdultDonor10252_CNhs12320_tpm_fwd OccipitalCortexAdultD10252+ bigWig occipital cortex, adult, donor10252_CNhs12320_10163-103B1_forward 1 3475 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%2c%20adult%2c%20donor10252.CNhs12320.10163-103B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel occipital cortex, adult, donor10252_CNhs12320_10163-103B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10163-103B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalCortexAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalCortexAdultDonor10252_CNhs12320_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1\ urlLabel FANTOM5 Details:\ OccipitalCortexAdultDonor10252_CNhs12320_ctss_fwd OccipitalCortexAdultD10252+ bigWig occipital cortex, adult, donor10252_CNhs12320_10163-103B1_forward 0 3475 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%2c%20adult%2c%20donor10252.CNhs12320.10163-103B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel occipital cortex, adult, donor10252_CNhs12320_10163-103B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10163-103B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalCortexAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalCortexAdultDonor10252_CNhs12320_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1\ urlLabel FANTOM5 Details:\ OccipitalCortexAdultDonor10252_CNhs12320_tpm_rev OccipitalCortexAdultD10252- bigWig occipital cortex, adult, donor10252_CNhs12320_10163-103B1_reverse 1 3476 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%2c%20adult%2c%20donor10252.CNhs12320.10163-103B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel occipital cortex, adult, donor10252_CNhs12320_10163-103B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10163-103B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalCortexAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalCortexAdultDonor10252_CNhs12320_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1\ urlLabel FANTOM5 Details:\ OccipitalCortexAdultDonor10252_CNhs12320_ctss_rev OccipitalCortexAdultD10252- bigWig occipital cortex, adult, donor10252_CNhs12320_10163-103B1_reverse 0 3476 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%2c%20adult%2c%20donor10252.CNhs12320.10163-103B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel occipital cortex, adult, donor10252_CNhs12320_10163-103B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10163-103B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalCortexAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalCortexAdultDonor10252_CNhs12320_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1\ urlLabel FANTOM5 Details:\ OccipitalCortexNewbornDonor10223_CNhs14073_tpm_fwd OccipitalCortexNbD10223+ bigWig occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_forward 1 3477 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%2c%20newborn%2c%20donor10223.CNhs14073.10355-105E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10355-105E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalCortexNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalCortexNewbornDonor10223_CNhs14073_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4\ urlLabel FANTOM5 Details:\ OccipitalCortexNewbornDonor10223_CNhs14073_ctss_fwd OccipitalCortexNbD10223+ bigWig occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_forward 0 3477 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%2c%20newborn%2c%20donor10223.CNhs14073.10355-105E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10355-105E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalCortexNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalCortexNewbornDonor10223_CNhs14073_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4\ urlLabel FANTOM5 Details:\ OccipitalCortexNewbornDonor10223_CNhs14073_tpm_rev OccipitalCortexNbD10223- bigWig occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_reverse 1 3478 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%2c%20newborn%2c%20donor10223.CNhs14073.10355-105E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10355-105E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalCortexNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalCortexNewbornDonor10223_CNhs14073_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4\ urlLabel FANTOM5 Details:\ OccipitalCortexNewbornDonor10223_CNhs14073_ctss_rev OccipitalCortexNbD10223- bigWig occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_reverse 0 3478 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%2c%20newborn%2c%20donor10223.CNhs14073.10355-105E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10355-105E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalCortexNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalCortexNewbornDonor10223_CNhs14073_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4\ urlLabel FANTOM5 Details:\ OccipitalLobeAdultDonor1_CNhs11787_tpm_fwd OccipitalLobeAdultD1+ bigWig occipital lobe, adult, donor1_CNhs11787_10076-102A4_forward 1 3479 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20lobe%2c%20adult%2c%20donor1.CNhs11787.10076-102A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel occipital lobe, adult, donor1_CNhs11787_10076-102A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10076-102A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalLobeAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalLobeAdultDonor1_CNhs11787_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4\ urlLabel FANTOM5 Details:\ OccipitalLobeAdultDonor1_CNhs11787_ctss_fwd OccipitalLobeAdultD1+ bigWig occipital lobe, adult, donor1_CNhs11787_10076-102A4_forward 0 3479 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20lobe%2c%20adult%2c%20donor1.CNhs11787.10076-102A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel occipital lobe, adult, donor1_CNhs11787_10076-102A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10076-102A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalLobeAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalLobeAdultDonor1_CNhs11787_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4\ urlLabel FANTOM5 Details:\ OccipitalLobeAdultDonor1_CNhs11787_tpm_rev OccipitalLobeAdultD1- bigWig occipital lobe, adult, donor1_CNhs11787_10076-102A4_reverse 1 3480 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20lobe%2c%20adult%2c%20donor1.CNhs11787.10076-102A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel occipital lobe, adult, donor1_CNhs11787_10076-102A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10076-102A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalLobeAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalLobeAdultDonor1_CNhs11787_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4\ urlLabel FANTOM5 Details:\ OccipitalLobeAdultDonor1_CNhs11787_ctss_rev OccipitalLobeAdultD1- bigWig occipital lobe, adult, donor1_CNhs11787_10076-102A4_reverse 0 3480 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20lobe%2c%20adult%2c%20donor1.CNhs11787.10076-102A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel occipital lobe, adult, donor1_CNhs11787_10076-102A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10076-102A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalLobeAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalLobeAdultDonor1_CNhs11787_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4\ urlLabel FANTOM5 Details:\ OccipitalLobeFetalDonor1_CNhs11784_tpm_fwd OccipitalLobeFetalD1+ bigWig occipital lobe, fetal, donor1_CNhs11784_10073-102A1_forward 1 3481 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20lobe%2c%20fetal%2c%20donor1.CNhs11784.10073-102A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel occipital lobe, fetal, donor1_CNhs11784_10073-102A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10073-102A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalLobeFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalLobeFetalDonor1_CNhs11784_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1\ urlLabel FANTOM5 Details:\ OccipitalLobeFetalDonor1_CNhs11784_ctss_fwd OccipitalLobeFetalD1+ bigWig occipital lobe, fetal, donor1_CNhs11784_10073-102A1_forward 0 3481 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20lobe%2c%20fetal%2c%20donor1.CNhs11784.10073-102A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel occipital lobe, fetal, donor1_CNhs11784_10073-102A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10073-102A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalLobeFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalLobeFetalDonor1_CNhs11784_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1\ urlLabel FANTOM5 Details:\ OccipitalLobeFetalDonor1_CNhs11784_tpm_rev OccipitalLobeFetalD1- bigWig occipital lobe, fetal, donor1_CNhs11784_10073-102A1_reverse 1 3482 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20lobe%2c%20fetal%2c%20donor1.CNhs11784.10073-102A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel occipital lobe, fetal, donor1_CNhs11784_10073-102A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10073-102A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalLobeFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalLobeFetalDonor1_CNhs11784_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1\ urlLabel FANTOM5 Details:\ OccipitalLobeFetalDonor1_CNhs11784_ctss_rev OccipitalLobeFetalD1- bigWig occipital lobe, fetal, donor1_CNhs11784_10073-102A1_reverse 0 3482 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20lobe%2c%20fetal%2c%20donor1.CNhs11784.10073-102A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel occipital lobe, fetal, donor1_CNhs11784_10073-102A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10073-102A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalLobeFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalLobeFetalDonor1_CNhs11784_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1\ urlLabel FANTOM5 Details:\ OccipitalPoleAdultPool1_CNhs10643_tpm_fwd OccipitalPoleAdultPl1+ bigWig occipital pole, adult, pool1_CNhs10643_10036-101E9_forward 1 3483 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20pole%2c%20adult%2c%20pool1.CNhs10643.10036-101E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel occipital pole, adult, pool1_CNhs10643_10036-101E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10036-101E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalPoleAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalPoleAdultPool1_CNhs10643_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9\ urlLabel FANTOM5 Details:\ OccipitalPoleAdultPool1_CNhs10643_ctss_fwd OccipitalPoleAdultPl1+ bigWig occipital pole, adult, pool1_CNhs10643_10036-101E9_forward 0 3483 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20pole%2c%20adult%2c%20pool1.CNhs10643.10036-101E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel occipital pole, adult, pool1_CNhs10643_10036-101E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10036-101E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalPoleAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalPoleAdultPool1_CNhs10643_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9\ urlLabel FANTOM5 Details:\ OccipitalPoleAdultPool1_CNhs10643_tpm_rev OccipitalPoleAdultPl1- bigWig occipital pole, adult, pool1_CNhs10643_10036-101E9_reverse 1 3484 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20pole%2c%20adult%2c%20pool1.CNhs10643.10036-101E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel occipital pole, adult, pool1_CNhs10643_10036-101E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10036-101E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalPoleAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalPoleAdultPool1_CNhs10643_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9\ urlLabel FANTOM5 Details:\ OccipitalPoleAdultPool1_CNhs10643_ctss_rev OccipitalPoleAdultPl1- bigWig occipital pole, adult, pool1_CNhs10643_10036-101E9_reverse 0 3484 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20pole%2c%20adult%2c%20pool1.CNhs10643.10036-101E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel occipital pole, adult, pool1_CNhs10643_10036-101E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10036-101E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalPoleAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalPoleAdultPool1_CNhs10643_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9\ urlLabel FANTOM5 Details:\ OlfactoryRegionAdult_CNhs12611_tpm_fwd OlfactoryRegionAdult+ bigWig olfactory region, adult_CNhs12611_10195-103E6_forward 1 3485 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/olfactory%20region%2c%20adult.CNhs12611.10195-103E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel olfactory region, adult_CNhs12611_10195-103E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10195-103E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryRegionAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OlfactoryRegionAdult_CNhs12611_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6\ urlLabel FANTOM5 Details:\ OlfactoryRegionAdult_CNhs12611_ctss_fwd OlfactoryRegionAdult+ bigWig olfactory region, adult_CNhs12611_10195-103E6_forward 0 3485 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/olfactory%20region%2c%20adult.CNhs12611.10195-103E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel olfactory region, adult_CNhs12611_10195-103E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10195-103E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryRegionAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OlfactoryRegionAdult_CNhs12611_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6\ urlLabel FANTOM5 Details:\ OlfactoryRegionAdult_CNhs12611_tpm_rev OlfactoryRegionAdult- bigWig olfactory region, adult_CNhs12611_10195-103E6_reverse 1 3486 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/olfactory%20region%2c%20adult.CNhs12611.10195-103E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel olfactory region, adult_CNhs12611_10195-103E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10195-103E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryRegionAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OlfactoryRegionAdult_CNhs12611_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6\ urlLabel FANTOM5 Details:\ OlfactoryRegionAdult_CNhs12611_ctss_rev OlfactoryRegionAdult- bigWig olfactory region, adult_CNhs12611_10195-103E6_reverse 0 3486 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/olfactory%20region%2c%20adult.CNhs12611.10195-103E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel olfactory region, adult_CNhs12611_10195-103E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10195-103E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryRegionAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OlfactoryRegionAdult_CNhs12611_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6\ urlLabel FANTOM5 Details:\ OpticNerveDonor1_CNhs13449_tpm_fwd OpticNerveD1+ bigWig optic nerve, donor1_CNhs13449_10277-104E7_forward 1 3487 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/optic%20nerve%2c%20donor1.CNhs13449.10277-104E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel optic nerve, donor1_CNhs13449_10277-104E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10277-104E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OpticNerveD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OpticNerveDonor1_CNhs13449_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7\ urlLabel FANTOM5 Details:\ OpticNerveDonor1_CNhs13449_ctss_fwd OpticNerveD1+ bigWig optic nerve, donor1_CNhs13449_10277-104E7_forward 0 3487 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/optic%20nerve%2c%20donor1.CNhs13449.10277-104E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel optic nerve, donor1_CNhs13449_10277-104E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10277-104E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OpticNerveD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OpticNerveDonor1_CNhs13449_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7\ urlLabel FANTOM5 Details:\ OpticNerveDonor1_CNhs13449_tpm_rev OpticNerveD1- bigWig optic nerve, donor1_CNhs13449_10277-104E7_reverse 1 3488 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/optic%20nerve%2c%20donor1.CNhs13449.10277-104E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel optic nerve, donor1_CNhs13449_10277-104E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10277-104E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OpticNerveD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OpticNerveDonor1_CNhs13449_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7\ urlLabel FANTOM5 Details:\ OpticNerveDonor1_CNhs13449_ctss_rev OpticNerveD1- bigWig optic nerve, donor1_CNhs13449_10277-104E7_reverse 0 3488 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/optic%20nerve%2c%20donor1.CNhs13449.10277-104E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel optic nerve, donor1_CNhs13449_10277-104E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10277-104E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OpticNerveD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OpticNerveDonor1_CNhs13449_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7\ urlLabel FANTOM5 Details:\ OvaryAdultPool1_CNhs10626_tpm_fwd OvaryAdultPl1+ bigWig ovary, adult, pool1_CNhs10626_10020-101D2_forward 1 3489 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ovary%2c%20adult%2c%20pool1.CNhs10626.10020-101D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ovary, adult, pool1_CNhs10626_10020-101D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10020-101D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OvaryAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OvaryAdultPool1_CNhs10626_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2\ urlLabel FANTOM5 Details:\ OvaryAdultPool1_CNhs10626_ctss_fwd OvaryAdultPl1+ bigWig ovary, adult, pool1_CNhs10626_10020-101D2_forward 0 3489 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ovary%2c%20adult%2c%20pool1.CNhs10626.10020-101D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ovary, adult, pool1_CNhs10626_10020-101D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10020-101D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OvaryAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OvaryAdultPool1_CNhs10626_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2\ urlLabel FANTOM5 Details:\ OvaryAdultPool1_CNhs10626_tpm_rev OvaryAdultPl1- bigWig ovary, adult, pool1_CNhs10626_10020-101D2_reverse 1 3490 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ovary%2c%20adult%2c%20pool1.CNhs10626.10020-101D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ovary, adult, pool1_CNhs10626_10020-101D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10020-101D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OvaryAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OvaryAdultPool1_CNhs10626_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2\ urlLabel FANTOM5 Details:\ OvaryAdultPool1_CNhs10626_ctss_rev OvaryAdultPl1- bigWig ovary, adult, pool1_CNhs10626_10020-101D2_reverse 0 3490 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ovary%2c%20adult%2c%20pool1.CNhs10626.10020-101D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ovary, adult, pool1_CNhs10626_10020-101D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10020-101D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OvaryAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OvaryAdultPool1_CNhs10626_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2\ urlLabel FANTOM5 Details:\ PancreasAdultDonor1_CNhs11756_tpm_fwd PancreasAdultD1+ bigWig pancreas, adult, donor1_CNhs11756_10049-101G4_forward 1 3491 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pancreas%2c%20adult%2c%20donor1.CNhs11756.10049-101G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pancreas, adult, donor1_CNhs11756_10049-101G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10049-101G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PancreasAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PancreasAdultDonor1_CNhs11756_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4\ urlLabel FANTOM5 Details:\ PancreasAdultDonor1_CNhs11756_ctss_fwd PancreasAdultD1+ bigWig pancreas, adult, donor1_CNhs11756_10049-101G4_forward 0 3491 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pancreas%2c%20adult%2c%20donor1.CNhs11756.10049-101G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel pancreas, adult, donor1_CNhs11756_10049-101G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10049-101G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PancreasAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PancreasAdultDonor1_CNhs11756_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4\ urlLabel FANTOM5 Details:\ PancreasAdultDonor1_CNhs11756_tpm_rev PancreasAdultD1- bigWig pancreas, adult, donor1_CNhs11756_10049-101G4_reverse 1 3492 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pancreas%2c%20adult%2c%20donor1.CNhs11756.10049-101G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel pancreas, adult, donor1_CNhs11756_10049-101G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10049-101G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PancreasAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PancreasAdultDonor1_CNhs11756_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4\ urlLabel FANTOM5 Details:\ PancreasAdultDonor1_CNhs11756_ctss_rev PancreasAdultD1- bigWig pancreas, adult, donor1_CNhs11756_10049-101G4_reverse 0 3492 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pancreas%2c%20adult%2c%20donor1.CNhs11756.10049-101G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pancreas, adult, donor1_CNhs11756_10049-101G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10049-101G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PancreasAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PancreasAdultDonor1_CNhs11756_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4\ urlLabel FANTOM5 Details:\ ParacentralGyrusAdultPool1_CNhs10642_tpm_fwd ParacentralGyrusAdultPl1+ bigWig paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_forward 1 3493 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/paracentral%20gyrus%2c%20adult%2c%20pool1.CNhs10642.10035-101E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10035-101E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParacentralGyrusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParacentralGyrusAdultPool1_CNhs10642_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8\ urlLabel FANTOM5 Details:\ ParacentralGyrusAdultPool1_CNhs10642_ctss_fwd ParacentralGyrusAdultPl1+ bigWig paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_forward 0 3493 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/paracentral%20gyrus%2c%20adult%2c%20pool1.CNhs10642.10035-101E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10035-101E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParacentralGyrusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParacentralGyrusAdultPool1_CNhs10642_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8\ urlLabel FANTOM5 Details:\ ParacentralGyrusAdultPool1_CNhs10642_tpm_rev ParacentralGyrusAdultPl1- bigWig paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_reverse 1 3494 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/paracentral%20gyrus%2c%20adult%2c%20pool1.CNhs10642.10035-101E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10035-101E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParacentralGyrusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParacentralGyrusAdultPool1_CNhs10642_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8\ urlLabel FANTOM5 Details:\ ParacentralGyrusAdultPool1_CNhs10642_ctss_rev ParacentralGyrusAdultPl1- bigWig paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_reverse 0 3494 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/paracentral%20gyrus%2c%20adult%2c%20pool1.CNhs10642.10035-101E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10035-101E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParacentralGyrusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParacentralGyrusAdultPool1_CNhs10642_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8\ urlLabel FANTOM5 Details:\ ParietalCortexAdultDonor10258_CNhs14226_tpm_fwd ParietalCortexAdultD10258+ bigWig parietal cortex, adult, donor10258_CNhs14226_10373-105G4_forward 1 3495 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20cortex%2c%20adult%2c%20donor10258.CNhs14226.10373-105G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel parietal cortex, adult, donor10258_CNhs14226_10373-105G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10373-105G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalCortexAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalCortexAdultDonor10258_CNhs14226_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4\ urlLabel FANTOM5 Details:\ ParietalCortexAdultDonor10258_CNhs14226_ctss_fwd ParietalCortexAdultD10258+ bigWig parietal cortex, adult, donor10258_CNhs14226_10373-105G4_forward 0 3495 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20cortex%2c%20adult%2c%20donor10258.CNhs14226.10373-105G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel parietal cortex, adult, donor10258_CNhs14226_10373-105G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10373-105G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalCortexAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalCortexAdultDonor10258_CNhs14226_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4\ urlLabel FANTOM5 Details:\ ParietalCortexAdultDonor10258_CNhs14226_tpm_rev ParietalCortexAdultD10258- bigWig parietal cortex, adult, donor10258_CNhs14226_10373-105G4_reverse 1 3496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20cortex%2c%20adult%2c%20donor10258.CNhs14226.10373-105G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel parietal cortex, adult, donor10258_CNhs14226_10373-105G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10373-105G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalCortexAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalCortexAdultDonor10258_CNhs14226_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4\ urlLabel FANTOM5 Details:\ ParietalCortexAdultDonor10258_CNhs14226_ctss_rev ParietalCortexAdultD10258- bigWig parietal cortex, adult, donor10258_CNhs14226_10373-105G4_reverse 0 3496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20cortex%2c%20adult%2c%20donor10258.CNhs14226.10373-105G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel parietal cortex, adult, donor10258_CNhs14226_10373-105G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10373-105G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalCortexAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalCortexAdultDonor10258_CNhs14226_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4\ urlLabel FANTOM5 Details:\ ParietalLobeAdultDonor10196_CNhs13797_tpm_fwd ParietalLobeAdultD10196+ bigWig parietal lobe - adult, donor10196_CNhs13797_10171-103B9_forward 1 3497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%20-%20adult%2c%20donor10196.CNhs13797.10171-103B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel parietal lobe - adult, donor10196_CNhs13797_10171-103B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10171-103B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeAdultDonor10196_CNhs13797_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9\ urlLabel FANTOM5 Details:\ ParietalLobeAdultDonor10196_CNhs13797_ctss_fwd ParietalLobeAdultD10196+ bigWig parietal lobe - adult, donor10196_CNhs13797_10171-103B9_forward 0 3497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%20-%20adult%2c%20donor10196.CNhs13797.10171-103B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel parietal lobe - adult, donor10196_CNhs13797_10171-103B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10171-103B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeAdultDonor10196_CNhs13797_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9\ urlLabel FANTOM5 Details:\ ParietalLobeAdultDonor10196_CNhs13797_tpm_rev ParietalLobeAdultD10196- bigWig parietal lobe - adult, donor10196_CNhs13797_10171-103B9_reverse 1 3498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%20-%20adult%2c%20donor10196.CNhs13797.10171-103B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel parietal lobe - adult, donor10196_CNhs13797_10171-103B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10171-103B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeAdultDonor10196_CNhs13797_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9\ urlLabel FANTOM5 Details:\ ParietalLobeAdultDonor10196_CNhs13797_ctss_rev ParietalLobeAdultD10196- bigWig parietal lobe - adult, donor10196_CNhs13797_10171-103B9_reverse 0 3498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%20-%20adult%2c%20donor10196.CNhs13797.10171-103B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel parietal lobe - adult, donor10196_CNhs13797_10171-103B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10171-103B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeAdultDonor10196_CNhs13797_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9\ urlLabel FANTOM5 Details:\ ParietalLobeAdultDonor10252_CNhs12317_tpm_fwd ParietalLobeAdultD10252+ bigWig parietal lobe, adult, donor10252_CNhs12317_10157-103A4_forward 1 3499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20adult%2c%20donor10252.CNhs12317.10157-103A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel parietal lobe, adult, donor10252_CNhs12317_10157-103A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10157-103A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeAdultDonor10252_CNhs12317_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4\ urlLabel FANTOM5 Details:\ ParietalLobeAdultDonor10252_CNhs12317_ctss_fwd ParietalLobeAdultD10252+ bigWig parietal lobe, adult, donor10252_CNhs12317_10157-103A4_forward 0 3499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20adult%2c%20donor10252.CNhs12317.10157-103A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel parietal lobe, adult, donor10252_CNhs12317_10157-103A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10157-103A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeAdultDonor10252_CNhs12317_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4\ urlLabel FANTOM5 Details:\ ParietalLobeAdultDonor10252_CNhs12317_tpm_rev ParietalLobeAdultD10252- bigWig parietal lobe, adult, donor10252_CNhs12317_10157-103A4_reverse 1 3500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20adult%2c%20donor10252.CNhs12317.10157-103A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel parietal lobe, adult, donor10252_CNhs12317_10157-103A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10157-103A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeAdultDonor10252_CNhs12317_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4\ urlLabel FANTOM5 Details:\ ParietalLobeAdultDonor10252_CNhs12317_ctss_rev ParietalLobeAdultD10252- bigWig parietal lobe, adult, donor10252_CNhs12317_10157-103A4_reverse 0 3500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20adult%2c%20donor10252.CNhs12317.10157-103A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel parietal lobe, adult, donor10252_CNhs12317_10157-103A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10157-103A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeAdultDonor10252_CNhs12317_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4\ urlLabel FANTOM5 Details:\ ParietalLobeAdultPool1_CNhs10641_tpm_fwd ParietalLobeAdultPl1+ bigWig parietal lobe, adult, pool1_CNhs10641_10034-101E7_forward 1 3501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20adult%2c%20pool1.CNhs10641.10034-101E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel parietal lobe, adult, pool1_CNhs10641_10034-101E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10034-101E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeAdultPool1_CNhs10641_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7\ urlLabel FANTOM5 Details:\ ParietalLobeAdultPool1_CNhs10641_ctss_fwd ParietalLobeAdultPl1+ bigWig parietal lobe, adult, pool1_CNhs10641_10034-101E7_forward 0 3501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20adult%2c%20pool1.CNhs10641.10034-101E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel parietal lobe, adult, pool1_CNhs10641_10034-101E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10034-101E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeAdultPool1_CNhs10641_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7\ urlLabel FANTOM5 Details:\ ParietalLobeAdultPool1_CNhs10641_tpm_rev ParietalLobeAdultPl1- bigWig parietal lobe, adult, pool1_CNhs10641_10034-101E7_reverse 1 3502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20adult%2c%20pool1.CNhs10641.10034-101E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel parietal lobe, adult, pool1_CNhs10641_10034-101E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10034-101E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeAdultPool1_CNhs10641_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7\ urlLabel FANTOM5 Details:\ ParietalLobeAdultPool1_CNhs10641_ctss_rev ParietalLobeAdultPl1- bigWig parietal lobe, adult, pool1_CNhs10641_10034-101E7_reverse 0 3502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20adult%2c%20pool1.CNhs10641.10034-101E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel parietal lobe, adult, pool1_CNhs10641_10034-101E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10034-101E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeAdultPool1_CNhs10641_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7\ urlLabel FANTOM5 Details:\ ParietalLobeFetalDonor1_CNhs11782_tpm_fwd ParietalLobeFetalD1+ bigWig parietal lobe, fetal, donor1_CNhs11782_10072-101I9_forward 1 3503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20fetal%2c%20donor1.CNhs11782.10072-101I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel parietal lobe, fetal, donor1_CNhs11782_10072-101I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10072-101I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeFetalDonor1_CNhs11782_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9\ urlLabel FANTOM5 Details:\ ParietalLobeFetalDonor1_CNhs11782_ctss_fwd ParietalLobeFetalD1+ bigWig parietal lobe, fetal, donor1_CNhs11782_10072-101I9_forward 0 3503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20fetal%2c%20donor1.CNhs11782.10072-101I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel parietal lobe, fetal, donor1_CNhs11782_10072-101I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10072-101I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeFetalDonor1_CNhs11782_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9\ urlLabel FANTOM5 Details:\ ParietalLobeFetalDonor1_CNhs11782_tpm_rev ParietalLobeFetalD1- bigWig parietal lobe, fetal, donor1_CNhs11782_10072-101I9_reverse 1 3504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20fetal%2c%20donor1.CNhs11782.10072-101I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel parietal lobe, fetal, donor1_CNhs11782_10072-101I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10072-101I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeFetalDonor1_CNhs11782_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9\ urlLabel FANTOM5 Details:\ ParietalLobeFetalDonor1_CNhs11782_ctss_rev ParietalLobeFetalD1- bigWig parietal lobe, fetal, donor1_CNhs11782_10072-101I9_reverse 0 3504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20fetal%2c%20donor1.CNhs11782.10072-101I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel parietal lobe, fetal, donor1_CNhs11782_10072-101I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10072-101I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeFetalDonor1_CNhs11782_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9\ urlLabel FANTOM5 Details:\ ParietalLobeNewbornDonor10223_CNhs14074_tpm_fwd ParietalLobeNbD10223+ bigWig parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_forward 1 3505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20newborn%2c%20donor10223.CNhs14074.10356-105E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10356-105E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeNewbornDonor10223_CNhs14074_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5\ urlLabel FANTOM5 Details:\ ParietalLobeNewbornDonor10223_CNhs14074_ctss_fwd ParietalLobeNbD10223+ bigWig parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_forward 0 3505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20newborn%2c%20donor10223.CNhs14074.10356-105E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10356-105E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeNewbornDonor10223_CNhs14074_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5\ urlLabel FANTOM5 Details:\ ParietalLobeNewbornDonor10223_CNhs14074_tpm_rev ParietalLobeNbD10223- bigWig parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_reverse 1 3506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20newborn%2c%20donor10223.CNhs14074.10356-105E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10356-105E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeNewbornDonor10223_CNhs14074_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5\ urlLabel FANTOM5 Details:\ ParietalLobeNewbornDonor10223_CNhs14074_ctss_rev ParietalLobeNbD10223- bigWig parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_reverse 0 3506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20newborn%2c%20donor10223.CNhs14074.10356-105E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10356-105E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeNewbornDonor10223_CNhs14074_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5\ urlLabel FANTOM5 Details:\ ParotidGlandAdult_CNhs12849_tpm_fwd ParotidGlandAdult+ bigWig parotid gland, adult_CNhs12849_10199-103F1_forward 1 3507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parotid%20gland%2c%20adult.CNhs12849.10199-103F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel parotid gland, adult_CNhs12849_10199-103F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10199-103F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParotidGlandAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParotidGlandAdult_CNhs12849_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1\ urlLabel FANTOM5 Details:\ ParotidGlandAdult_CNhs12849_ctss_fwd ParotidGlandAdult+ bigWig parotid gland, adult_CNhs12849_10199-103F1_forward 0 3507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parotid%20gland%2c%20adult.CNhs12849.10199-103F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel parotid gland, adult_CNhs12849_10199-103F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10199-103F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParotidGlandAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParotidGlandAdult_CNhs12849_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1\ urlLabel FANTOM5 Details:\ ParotidGlandAdult_CNhs12849_tpm_rev ParotidGlandAdult- bigWig parotid gland, adult_CNhs12849_10199-103F1_reverse 1 3508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parotid%20gland%2c%20adult.CNhs12849.10199-103F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel parotid gland, adult_CNhs12849_10199-103F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10199-103F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParotidGlandAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParotidGlandAdult_CNhs12849_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1\ urlLabel FANTOM5 Details:\ ParotidGlandAdult_CNhs12849_ctss_rev ParotidGlandAdult- bigWig parotid gland, adult_CNhs12849_10199-103F1_reverse 0 3508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parotid%20gland%2c%20adult.CNhs12849.10199-103F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel parotid gland, adult_CNhs12849_10199-103F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10199-103F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParotidGlandAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParotidGlandAdult_CNhs12849_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1\ urlLabel FANTOM5 Details:\ PenisAdult_CNhs12850_tpm_fwd PenisAdult+ bigWig penis, adult_CNhs12850_10200-103F2_forward 1 3509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/penis%2c%20adult.CNhs12850.10200-103F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel penis, adult_CNhs12850_10200-103F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10200-103F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PenisAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PenisAdult_CNhs12850_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2\ urlLabel FANTOM5 Details:\ PenisAdult_CNhs12850_ctss_fwd PenisAdult+ bigWig penis, adult_CNhs12850_10200-103F2_forward 0 3509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/penis%2c%20adult.CNhs12850.10200-103F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel penis, adult_CNhs12850_10200-103F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10200-103F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PenisAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PenisAdult_CNhs12850_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2\ urlLabel FANTOM5 Details:\ PenisAdult_CNhs12850_tpm_rev PenisAdult- bigWig penis, adult_CNhs12850_10200-103F2_reverse 1 3510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/penis%2c%20adult.CNhs12850.10200-103F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel penis, adult_CNhs12850_10200-103F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10200-103F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PenisAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PenisAdult_CNhs12850_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2\ urlLabel FANTOM5 Details:\ PenisAdult_CNhs12850_ctss_rev PenisAdult- bigWig penis, adult_CNhs12850_10200-103F2_reverse 0 3510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/penis%2c%20adult.CNhs12850.10200-103F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel penis, adult_CNhs12850_10200-103F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10200-103F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PenisAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PenisAdult_CNhs12850_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10196_CNhs13804_tpm_fwd PinealGlandAdultD10196+ bigWig pineal gland - adult, donor10196_CNhs13804_10179-103C8_forward 1 3511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%20-%20adult%2c%20donor10196.CNhs13804.10179-103C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pineal gland - adult, donor10196_CNhs13804_10179-103C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10179-103C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PinealGlandAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PinealGlandAdultDonor10196_CNhs13804_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10196_CNhs13804_ctss_fwd PinealGlandAdultD10196+ bigWig pineal gland - adult, donor10196_CNhs13804_10179-103C8_forward 0 3511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%20-%20adult%2c%20donor10196.CNhs13804.10179-103C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel pineal gland - adult, donor10196_CNhs13804_10179-103C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10179-103C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PinealGlandAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PinealGlandAdultDonor10196_CNhs13804_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10196_CNhs13804_tpm_rev PinealGlandAdultD10196- bigWig pineal gland - adult, donor10196_CNhs13804_10179-103C8_reverse 1 3512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%20-%20adult%2c%20donor10196.CNhs13804.10179-103C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel pineal gland - adult, donor10196_CNhs13804_10179-103C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10179-103C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PinealGlandAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PinealGlandAdultDonor10196_CNhs13804_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10196_CNhs13804_ctss_rev PinealGlandAdultD10196- bigWig pineal gland - adult, donor10196_CNhs13804_10179-103C8_reverse 0 3512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%20-%20adult%2c%20donor10196.CNhs13804.10179-103C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pineal gland - adult, donor10196_CNhs13804_10179-103C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10179-103C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PinealGlandAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PinealGlandAdultDonor10196_CNhs13804_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10252_CNhs12228_tpm_fwd PinealGlandAdultD10252+ bigWig pineal gland, adult, donor10252_CNhs12228_10160-103A7_forward 1 3513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10160-103A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%2c%20adult%2c%20donor10252.CNhs12228.10160-103A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pineal gland, adult, donor10252_CNhs12228_10160-103A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10160-103A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PinealGlandAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PinealGlandAdultDonor10252_CNhs12228_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10160-103A7\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10252_CNhs12228_ctss_fwd PinealGlandAdultD10252+ bigWig pineal gland, adult, donor10252_CNhs12228_10160-103A7_forward 0 3513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10160-103A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%2c%20adult%2c%20donor10252.CNhs12228.10160-103A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel pineal gland, adult, donor10252_CNhs12228_10160-103A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10160-103A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PinealGlandAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PinealGlandAdultDonor10252_CNhs12228_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10160-103A7\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10252_CNhs12228_tpm_rev PinealGlandAdultD10252- bigWig pineal gland, adult, donor10252_CNhs12228_10160-103A7_reverse 1 3514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10160-103A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%2c%20adult%2c%20donor10252.CNhs12228.10160-103A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel pineal gland, adult, donor10252_CNhs12228_10160-103A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10160-103A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PinealGlandAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PinealGlandAdultDonor10252_CNhs12228_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10160-103A7\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10252_CNhs12228_ctss_rev PinealGlandAdultD10252- bigWig pineal gland, adult, donor10252_CNhs12228_10160-103A7_reverse 0 3514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10160-103A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%2c%20adult%2c%20donor10252.CNhs12228.10160-103A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pineal gland, adult, donor10252_CNhs12228_10160-103A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10160-103A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PinealGlandAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PinealGlandAdultDonor10252_CNhs12228_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10160-103A7\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10258_CNhs14230_tpm_fwd PinealGlandAdultD10258+ bigWig pineal gland, adult, donor10258_CNhs14230_10377-105G8_forward 1 3515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10377-105G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%2c%20adult%2c%20donor10258.CNhs14230.10377-105G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pineal gland, adult, donor10258_CNhs14230_10377-105G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10377-105G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PinealGlandAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PinealGlandAdultDonor10258_CNhs14230_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10377-105G8\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10258_CNhs14230_ctss_fwd PinealGlandAdultD10258+ bigWig pineal gland, adult, donor10258_CNhs14230_10377-105G8_forward 0 3515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10377-105G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%2c%20adult%2c%20donor10258.CNhs14230.10377-105G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel pineal gland, adult, donor10258_CNhs14230_10377-105G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10377-105G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PinealGlandAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PinealGlandAdultDonor10258_CNhs14230_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10377-105G8\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10258_CNhs14230_tpm_rev PinealGlandAdultD10258- bigWig pineal gland, adult, donor10258_CNhs14230_10377-105G8_reverse 1 3516 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10377-105G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%2c%20adult%2c%20donor10258.CNhs14230.10377-105G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel pineal gland, adult, donor10258_CNhs14230_10377-105G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10377-105G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PinealGlandAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PinealGlandAdultDonor10258_CNhs14230_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10377-105G8\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10258_CNhs14230_ctss_rev PinealGlandAdultD10258- bigWig pineal gland, adult, donor10258_CNhs14230_10377-105G8_reverse 0 3516 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10377-105G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%2c%20adult%2c%20donor10258.CNhs14230.10377-105G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pineal gland, adult, donor10258_CNhs14230_10377-105G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10377-105G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PinealGlandAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PinealGlandAdultDonor10258_CNhs14230_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10377-105G8\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10196_CNhs13805_tpm_fwd PituitaryGlandAdultD10196+ bigWig pituitary gland - adult, donor10196_CNhs13805_10180-103C9_forward 1 3517 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10180-103C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%20-%20adult%2c%20donor10196.CNhs13805.10180-103C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pituitary gland - adult, donor10196_CNhs13805_10180-103C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10180-103C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PituitaryGlandAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PituitaryGlandAdultDonor10196_CNhs13805_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10180-103C9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10196_CNhs13805_ctss_fwd PituitaryGlandAdultD10196+ bigWig pituitary gland - adult, donor10196_CNhs13805_10180-103C9_forward 0 3517 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10180-103C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%20-%20adult%2c%20donor10196.CNhs13805.10180-103C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel pituitary gland - adult, donor10196_CNhs13805_10180-103C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10180-103C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PituitaryGlandAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PituitaryGlandAdultDonor10196_CNhs13805_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10180-103C9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10196_CNhs13805_tpm_rev PituitaryGlandAdultD10196- bigWig pituitary gland - adult, donor10196_CNhs13805_10180-103C9_reverse 1 3518 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10180-103C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%20-%20adult%2c%20donor10196.CNhs13805.10180-103C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel pituitary gland - adult, donor10196_CNhs13805_10180-103C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10180-103C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PituitaryGlandAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PituitaryGlandAdultDonor10196_CNhs13805_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10180-103C9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10196_CNhs13805_ctss_rev PituitaryGlandAdultD10196- bigWig pituitary gland - adult, donor10196_CNhs13805_10180-103C9_reverse 0 3518 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10180-103C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%20-%20adult%2c%20donor10196.CNhs13805.10180-103C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pituitary gland - adult, donor10196_CNhs13805_10180-103C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10180-103C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PituitaryGlandAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PituitaryGlandAdultDonor10196_CNhs13805_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10180-103C9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10252_CNhs12229_tpm_fwd PituitaryGlandAdultD10252+ bigWig pituitary gland, adult, donor10252_CNhs12229_10162-103A9_forward 1 3519 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10162-103A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%2c%20adult%2c%20donor10252.CNhs12229.10162-103A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pituitary gland, adult, donor10252_CNhs12229_10162-103A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10162-103A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PituitaryGlandAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PituitaryGlandAdultDonor10252_CNhs12229_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10162-103A9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10252_CNhs12229_ctss_fwd PituitaryGlandAdultD10252+ bigWig pituitary gland, adult, donor10252_CNhs12229_10162-103A9_forward 0 3519 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10162-103A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%2c%20adult%2c%20donor10252.CNhs12229.10162-103A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel pituitary gland, adult, donor10252_CNhs12229_10162-103A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10162-103A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PituitaryGlandAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PituitaryGlandAdultDonor10252_CNhs12229_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10162-103A9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10252_CNhs12229_tpm_rev PituitaryGlandAdultD10252- bigWig pituitary gland, adult, donor10252_CNhs12229_10162-103A9_reverse 1 3520 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10162-103A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%2c%20adult%2c%20donor10252.CNhs12229.10162-103A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel pituitary gland, adult, donor10252_CNhs12229_10162-103A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10162-103A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PituitaryGlandAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PituitaryGlandAdultDonor10252_CNhs12229_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10162-103A9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10252_CNhs12229_ctss_rev PituitaryGlandAdultD10252- bigWig pituitary gland, adult, donor10252_CNhs12229_10162-103A9_reverse 0 3520 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10162-103A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%2c%20adult%2c%20donor10252.CNhs12229.10162-103A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pituitary gland, adult, donor10252_CNhs12229_10162-103A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10162-103A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PituitaryGlandAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PituitaryGlandAdultDonor10252_CNhs12229_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10162-103A9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10258_CNhs14231_tpm_fwd PituitaryGlandAdultD10258+ bigWig pituitary gland, adult, donor10258_CNhs14231_10378-105G9_forward 1 3521 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%2c%20adult%2c%20donor10258.CNhs14231.10378-105G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pituitary gland, adult, donor10258_CNhs14231_10378-105G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10378-105G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PituitaryGlandAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PituitaryGlandAdultDonor10258_CNhs14231_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10258_CNhs14231_ctss_fwd PituitaryGlandAdultD10258+ bigWig pituitary gland, adult, donor10258_CNhs14231_10378-105G9_forward 0 3521 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%2c%20adult%2c%20donor10258.CNhs14231.10378-105G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel pituitary gland, adult, donor10258_CNhs14231_10378-105G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10378-105G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PituitaryGlandAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PituitaryGlandAdultDonor10258_CNhs14231_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10258_CNhs14231_tpm_rev PituitaryGlandAdultD10258- bigWig pituitary gland, adult, donor10258_CNhs14231_10378-105G9_reverse 1 3522 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%2c%20adult%2c%20donor10258.CNhs14231.10378-105G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel pituitary gland, adult, donor10258_CNhs14231_10378-105G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10378-105G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PituitaryGlandAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PituitaryGlandAdultDonor10258_CNhs14231_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10258_CNhs14231_ctss_rev PituitaryGlandAdultD10258- bigWig pituitary gland, adult, donor10258_CNhs14231_10378-105G9_reverse 0 3522 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%2c%20adult%2c%20donor10258.CNhs14231.10378-105G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pituitary gland, adult, donor10258_CNhs14231_10378-105G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10378-105G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PituitaryGlandAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PituitaryGlandAdultDonor10258_CNhs14231_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9\ urlLabel FANTOM5 Details:\ PlacentaAdultPool1_CNhs10627_tpm_fwd PlacentaAdultPl1+ bigWig placenta, adult, pool1_CNhs10627_10021-101D3_forward 1 3523 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/placenta%2c%20adult%2c%20pool1.CNhs10627.10021-101D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel placenta, adult, pool1_CNhs10627_10021-101D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10021-101D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PlacentaAdultPool1_CNhs10627_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3\ urlLabel FANTOM5 Details:\ PlacentaAdultPool1_CNhs10627_ctss_fwd PlacentaAdultPl1+ bigWig placenta, adult, pool1_CNhs10627_10021-101D3_forward 0 3523 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/placenta%2c%20adult%2c%20pool1.CNhs10627.10021-101D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel placenta, adult, pool1_CNhs10627_10021-101D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10021-101D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PlacentaAdultPool1_CNhs10627_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3\ urlLabel FANTOM5 Details:\ PlacentaAdultPool1_CNhs10627_tpm_rev PlacentaAdultPl1- bigWig placenta, adult, pool1_CNhs10627_10021-101D3_reverse 1 3524 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/placenta%2c%20adult%2c%20pool1.CNhs10627.10021-101D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel placenta, adult, pool1_CNhs10627_10021-101D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10021-101D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PlacentaAdultPool1_CNhs10627_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3\ urlLabel FANTOM5 Details:\ PlacentaAdultPool1_CNhs10627_ctss_rev PlacentaAdultPl1- bigWig placenta, adult, pool1_CNhs10627_10021-101D3_reverse 0 3524 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/placenta%2c%20adult%2c%20pool1.CNhs10627.10021-101D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel placenta, adult, pool1_CNhs10627_10021-101D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10021-101D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PlacentaAdultPool1_CNhs10627_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3\ urlLabel FANTOM5 Details:\ PonsAdultPool1_CNhs10640_tpm_fwd PonsAdultPl1+ bigWig pons, adult, pool1_CNhs10640_10033-101E6_forward 1 3525 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pons%2c%20adult%2c%20pool1.CNhs10640.10033-101E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pons, adult, pool1_CNhs10640_10033-101E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10033-101E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PonsAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PonsAdultPool1_CNhs10640_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6\ urlLabel FANTOM5 Details:\ PonsAdultPool1_CNhs10640_ctss_fwd PonsAdultPl1+ bigWig pons, adult, pool1_CNhs10640_10033-101E6_forward 0 3525 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pons%2c%20adult%2c%20pool1.CNhs10640.10033-101E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel pons, adult, pool1_CNhs10640_10033-101E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10033-101E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PonsAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PonsAdultPool1_CNhs10640_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6\ urlLabel FANTOM5 Details:\ PonsAdultPool1_CNhs10640_tpm_rev PonsAdultPl1- bigWig pons, adult, pool1_CNhs10640_10033-101E6_reverse 1 3526 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pons%2c%20adult%2c%20pool1.CNhs10640.10033-101E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel pons, adult, pool1_CNhs10640_10033-101E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10033-101E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PonsAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PonsAdultPool1_CNhs10640_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6\ urlLabel FANTOM5 Details:\ PonsAdultPool1_CNhs10640_ctss_rev PonsAdultPl1- bigWig pons, adult, pool1_CNhs10640_10033-101E6_reverse 0 3526 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pons%2c%20adult%2c%20pool1.CNhs10640.10033-101E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pons, adult, pool1_CNhs10640_10033-101E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10033-101E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PonsAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PonsAdultPool1_CNhs10640_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6\ urlLabel FANTOM5 Details:\ PostcentralGyrusAdultPool1_CNhs10638_tpm_fwd PostcentralGyrusAdultPl1+ bigWig postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_forward 1 3527 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/postcentral%20gyrus%2c%20adult%2c%20pool1.CNhs10638.10032-101E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10032-101E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PostcentralGyrusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PostcentralGyrusAdultPool1_CNhs10638_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5\ urlLabel FANTOM5 Details:\ PostcentralGyrusAdultPool1_CNhs10638_ctss_fwd PostcentralGyrusAdultPl1+ bigWig postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_forward 0 3527 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/postcentral%20gyrus%2c%20adult%2c%20pool1.CNhs10638.10032-101E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10032-101E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PostcentralGyrusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PostcentralGyrusAdultPool1_CNhs10638_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5\ urlLabel FANTOM5 Details:\ PostcentralGyrusAdultPool1_CNhs10638_tpm_rev PostcentralGyrusAdultPl1- bigWig postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_reverse 1 3528 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/postcentral%20gyrus%2c%20adult%2c%20pool1.CNhs10638.10032-101E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10032-101E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PostcentralGyrusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PostcentralGyrusAdultPool1_CNhs10638_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5\ urlLabel FANTOM5 Details:\ PostcentralGyrusAdultPool1_CNhs10638_ctss_rev PostcentralGyrusAdultPl1- bigWig postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_reverse 0 3528 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/postcentral%20gyrus%2c%20adult%2c%20pool1.CNhs10638.10032-101E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10032-101E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PostcentralGyrusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PostcentralGyrusAdultPool1_CNhs10638_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5\ urlLabel FANTOM5 Details:\ ProstateAdultPool1_CNhs10628_tpm_fwd ProstateAdultPl1+ bigWig prostate, adult, pool1_CNhs10628_10022-101D4_forward 1 3529 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/prostate%2c%20adult%2c%20pool1.CNhs10628.10022-101D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel prostate, adult, pool1_CNhs10628_10022-101D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10022-101D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ProstateAdultPool1_CNhs10628_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4\ urlLabel FANTOM5 Details:\ ProstateAdultPool1_CNhs10628_ctss_fwd ProstateAdultPl1+ bigWig prostate, adult, pool1_CNhs10628_10022-101D4_forward 0 3529 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/prostate%2c%20adult%2c%20pool1.CNhs10628.10022-101D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel prostate, adult, pool1_CNhs10628_10022-101D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10022-101D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ProstateAdultPool1_CNhs10628_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4\ urlLabel FANTOM5 Details:\ ProstateAdultPool1_CNhs10628_tpm_rev ProstateAdultPl1- bigWig prostate, adult, pool1_CNhs10628_10022-101D4_reverse 1 3530 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/prostate%2c%20adult%2c%20pool1.CNhs10628.10022-101D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel prostate, adult, pool1_CNhs10628_10022-101D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10022-101D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ProstateAdultPool1_CNhs10628_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4\ urlLabel FANTOM5 Details:\ ProstateAdultPool1_CNhs10628_ctss_rev ProstateAdultPl1- bigWig prostate, adult, pool1_CNhs10628_10022-101D4_reverse 0 3530 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/prostate%2c%20adult%2c%20pool1.CNhs10628.10022-101D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel prostate, adult, pool1_CNhs10628_10022-101D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10022-101D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ProstateAdultPool1_CNhs10628_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10196_CNhs12324_tpm_fwd PutamenAdultD10196+ bigWig putamen, adult, donor10196_CNhs12324_10176-103C5_forward 1 3531 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10196.CNhs12324.10176-103C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10196_CNhs12324_10176-103C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10176-103C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10196_CNhs12324_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10196_CNhs12324_ctss_fwd PutamenAdultD10196+ bigWig putamen, adult, donor10196_CNhs12324_10176-103C5_forward 0 3531 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10196.CNhs12324.10176-103C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10196_CNhs12324_10176-103C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10176-103C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10196_CNhs12324_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10196_CNhs12324_tpm_rev PutamenAdultD10196- bigWig putamen, adult, donor10196_CNhs12324_10176-103C5_reverse 1 3532 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10196.CNhs12324.10176-103C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10196_CNhs12324_10176-103C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10176-103C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10196_CNhs12324_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10196_CNhs12324_ctss_rev PutamenAdultD10196- bigWig putamen, adult, donor10196_CNhs12324_10176-103C5_reverse 0 3532 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10196.CNhs12324.10176-103C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10196_CNhs12324_10176-103C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10176-103C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10196_CNhs12324_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10252_CNhs13912_tpm_fwd PutamenAdultD10252+ bigWig putamen, adult, donor10252_CNhs13912_10152-102I8_forward 1 3533 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10252.CNhs13912.10152-102I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10252_CNhs13912_10152-102I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10152-102I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10252_CNhs13912_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10252_CNhs13912_ctss_fwd PutamenAdultD10252+ bigWig putamen, adult, donor10252_CNhs13912_10152-102I8_forward 0 3533 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10252.CNhs13912.10152-102I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10252_CNhs13912_10152-102I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10152-102I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10252_CNhs13912_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10252_CNhs13912_tpm_rev PutamenAdultD10252- bigWig putamen, adult, donor10252_CNhs13912_10152-102I8_reverse 1 3534 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10252.CNhs13912.10152-102I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10252_CNhs13912_10152-102I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10152-102I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10252_CNhs13912_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10252_CNhs13912_ctss_rev PutamenAdultD10252- bigWig putamen, adult, donor10252_CNhs13912_10152-102I8_reverse 0 3534 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10252.CNhs13912.10152-102I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10252_CNhs13912_10152-102I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10152-102I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10252_CNhs13912_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10258TechRep1_CNhs14225_tpm_fwd PutamenAdultD10258Tr1+ bigWig putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_forward 1 3535 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14225.10372-105G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10258Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10258TechRep1_CNhs14225_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10258TechRep1_CNhs14225_ctss_fwd PutamenAdultD10258Tr1+ bigWig putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_forward 0 3535 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14225.10372-105G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10258Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10258TechRep1_CNhs14225_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10258TechRep1_CNhs14225_tpm_rev PutamenAdultD10258Tr1- bigWig putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_reverse 1 3536 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14225.10372-105G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10258Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10258TechRep1_CNhs14225_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10258TechRep1_CNhs14225_ctss_rev PutamenAdultD10258Tr1- bigWig putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_reverse 0 3536 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14225.10372-105G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10258Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10258TechRep1_CNhs14225_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10258TechRep2_CNhs14618_tpm_fwd PutamenAdultD10258Tr2+ bigWig putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_forward 1 3537 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14618.10372-105G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10258Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10258TechRep2_CNhs14618_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10258TechRep2_CNhs14618_ctss_fwd PutamenAdultD10258Tr2+ bigWig putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_forward 0 3537 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14618.10372-105G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10258Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10258TechRep2_CNhs14618_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10258TechRep2_CNhs14618_tpm_rev PutamenAdultD10258Tr2- bigWig putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_reverse 1 3538 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14618.10372-105G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10258Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10258TechRep2_CNhs14618_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10258TechRep2_CNhs14618_ctss_rev PutamenAdultD10258Tr2- bigWig putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_reverse 0 3538 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14618.10372-105G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10258Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10258TechRep2_CNhs14618_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ PutamenNewbornDonor10223_CNhs14083_tpm_fwd PutamenNbD10223+ bigWig putamen, newborn, donor10223_CNhs14083_10365-105F5_forward 1 3539 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20newborn%2c%20donor10223.CNhs14083.10365-105F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel putamen, newborn, donor10223_CNhs14083_10365-105F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10365-105F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenNewbornDonor10223_CNhs14083_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5\ urlLabel FANTOM5 Details:\ PutamenNewbornDonor10223_CNhs14083_ctss_fwd PutamenNbD10223+ bigWig putamen, newborn, donor10223_CNhs14083_10365-105F5_forward 0 3539 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20newborn%2c%20donor10223.CNhs14083.10365-105F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel putamen, newborn, donor10223_CNhs14083_10365-105F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10365-105F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenNewbornDonor10223_CNhs14083_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5\ urlLabel FANTOM5 Details:\ PutamenNewbornDonor10223_CNhs14083_tpm_rev PutamenNbD10223- bigWig putamen, newborn, donor10223_CNhs14083_10365-105F5_reverse 1 3540 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20newborn%2c%20donor10223.CNhs14083.10365-105F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel putamen, newborn, donor10223_CNhs14083_10365-105F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10365-105F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenNewbornDonor10223_CNhs14083_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5\ urlLabel FANTOM5 Details:\ PutamenNewbornDonor10223_CNhs14083_ctss_rev PutamenNbD10223- bigWig putamen, newborn, donor10223_CNhs14083_10365-105F5_reverse 0 3540 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20newborn%2c%20donor10223.CNhs14083.10365-105F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel putamen, newborn, donor10223_CNhs14083_10365-105F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10365-105F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenNewbornDonor10223_CNhs14083_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5\ urlLabel FANTOM5 Details:\ RectumFetalDonor1_CNhs11777_tpm_fwd RectumFetalD1+ bigWig rectum, fetal, donor1_CNhs11777_10067-101I4_forward 1 3541 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/rectum%2c%20fetal%2c%20donor1.CNhs11777.10067-101I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel rectum, fetal, donor1_CNhs11777_10067-101I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10067-101I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RectumFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track RectumFetalDonor1_CNhs11777_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4\ urlLabel FANTOM5 Details:\ RectumFetalDonor1_CNhs11777_ctss_fwd RectumFetalD1+ bigWig rectum, fetal, donor1_CNhs11777_10067-101I4_forward 0 3541 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/rectum%2c%20fetal%2c%20donor1.CNhs11777.10067-101I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel rectum, fetal, donor1_CNhs11777_10067-101I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10067-101I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RectumFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track RectumFetalDonor1_CNhs11777_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4\ urlLabel FANTOM5 Details:\ RectumFetalDonor1_CNhs11777_tpm_rev RectumFetalD1- bigWig rectum, fetal, donor1_CNhs11777_10067-101I4_reverse 1 3542 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/rectum%2c%20fetal%2c%20donor1.CNhs11777.10067-101I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel rectum, fetal, donor1_CNhs11777_10067-101I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10067-101I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RectumFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track RectumFetalDonor1_CNhs11777_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4\ urlLabel FANTOM5 Details:\ RectumFetalDonor1_CNhs11777_ctss_rev RectumFetalD1- bigWig rectum, fetal, donor1_CNhs11777_10067-101I4_reverse 0 3542 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/rectum%2c%20fetal%2c%20donor1.CNhs11777.10067-101I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel rectum, fetal, donor1_CNhs11777_10067-101I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10067-101I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RectumFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track RectumFetalDonor1_CNhs11777_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4\ urlLabel FANTOM5 Details:\ RetinaAdultPool1_CNhs10636_tpm_fwd RetinaAdultPl1+ bigWig retina, adult, pool1_CNhs10636_10030-101E3_forward 1 3543 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/retina%2c%20adult%2c%20pool1.CNhs10636.10030-101E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel retina, adult, pool1_CNhs10636_10030-101E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10030-101E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RetinaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track RetinaAdultPool1_CNhs10636_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3\ urlLabel FANTOM5 Details:\ RetinaAdultPool1_CNhs10636_ctss_fwd RetinaAdultPl1+ bigWig retina, adult, pool1_CNhs10636_10030-101E3_forward 0 3543 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/retina%2c%20adult%2c%20pool1.CNhs10636.10030-101E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel retina, adult, pool1_CNhs10636_10030-101E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10030-101E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RetinaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track RetinaAdultPool1_CNhs10636_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3\ urlLabel FANTOM5 Details:\ RetinaAdultPool1_CNhs10636_tpm_rev RetinaAdultPl1- bigWig retina, adult, pool1_CNhs10636_10030-101E3_reverse 1 3544 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/retina%2c%20adult%2c%20pool1.CNhs10636.10030-101E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel retina, adult, pool1_CNhs10636_10030-101E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10030-101E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RetinaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track RetinaAdultPool1_CNhs10636_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3\ urlLabel FANTOM5 Details:\ RetinaAdultPool1_CNhs10636_ctss_rev RetinaAdultPl1- bigWig retina, adult, pool1_CNhs10636_10030-101E3_reverse 0 3544 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/retina%2c%20adult%2c%20pool1.CNhs10636.10030-101E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel retina, adult, pool1_CNhs10636_10030-101E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10030-101E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RetinaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track RetinaAdultPool1_CNhs10636_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3\ urlLabel FANTOM5 Details:\ SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_tpm_fwd SabiosciencesXpressrefUniversalPl1+ bigWig SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_forward 1 3545 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/SABiosciences%20XpressRef%20Human%20Universal%20Total%20RNA%2c%20pool1.CNhs10610.10002-101A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10002-101A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SabiosciencesXpressrefUniversalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5\ urlLabel FANTOM5 Details:\ SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_ctss_fwd SabiosciencesXpressrefUniversalPl1+ bigWig SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_forward 0 3545 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/SABiosciences%20XpressRef%20Human%20Universal%20Total%20RNA%2c%20pool1.CNhs10610.10002-101A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10002-101A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SabiosciencesXpressrefUniversalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5\ urlLabel FANTOM5 Details:\ SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_tpm_rev SabiosciencesXpressrefUniversalPl1- bigWig SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_reverse 1 3546 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/SABiosciences%20XpressRef%20Human%20Universal%20Total%20RNA%2c%20pool1.CNhs10610.10002-101A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10002-101A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SabiosciencesXpressrefUniversalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5\ urlLabel FANTOM5 Details:\ SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_ctss_rev SabiosciencesXpressrefUniversalPl1- bigWig SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_reverse 0 3546 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/SABiosciences%20XpressRef%20Human%20Universal%20Total%20RNA%2c%20pool1.CNhs10610.10002-101A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10002-101A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SabiosciencesXpressrefUniversalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5\ urlLabel FANTOM5 Details:\ SalivaryGlandAdultPool1_CNhs11677_tpm_fwd SalivaryGlandAdultPl1+ bigWig salivary gland, adult, pool1_CNhs11677_10093-102C3_forward 1 3547 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20gland%2c%20adult%2c%20pool1.CNhs11677.10093-102C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel salivary gland, adult, pool1_CNhs11677_10093-102C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10093-102C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryGlandAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SalivaryGlandAdultPool1_CNhs11677_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3\ urlLabel FANTOM5 Details:\ SalivaryGlandAdultPool1_CNhs11677_ctss_fwd SalivaryGlandAdultPl1+ bigWig salivary gland, adult, pool1_CNhs11677_10093-102C3_forward 0 3547 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20gland%2c%20adult%2c%20pool1.CNhs11677.10093-102C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel salivary gland, adult, pool1_CNhs11677_10093-102C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10093-102C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryGlandAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SalivaryGlandAdultPool1_CNhs11677_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3\ urlLabel FANTOM5 Details:\ SalivaryGlandAdultPool1_CNhs11677_tpm_rev SalivaryGlandAdultPl1- bigWig salivary gland, adult, pool1_CNhs11677_10093-102C3_reverse 1 3548 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20gland%2c%20adult%2c%20pool1.CNhs11677.10093-102C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel salivary gland, adult, pool1_CNhs11677_10093-102C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10093-102C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryGlandAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SalivaryGlandAdultPool1_CNhs11677_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3\ urlLabel FANTOM5 Details:\ SalivaryGlandAdultPool1_CNhs11677_ctss_rev SalivaryGlandAdultPl1- bigWig salivary gland, adult, pool1_CNhs11677_10093-102C3_reverse 0 3548 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20gland%2c%20adult%2c%20pool1.CNhs11677.10093-102C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel salivary gland, adult, pool1_CNhs11677_10093-102C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10093-102C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryGlandAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SalivaryGlandAdultPool1_CNhs11677_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3\ urlLabel FANTOM5 Details:\ SeminalVesicleAdult_CNhs12851_tpm_fwd SeminalVesicleAdult+ bigWig seminal vesicle, adult_CNhs12851_10201-103F3_forward 1 3549 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/seminal%20vesicle%2c%20adult.CNhs12851.10201-103F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel seminal vesicle, adult_CNhs12851_10201-103F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10201-103F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SeminalVesicleAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SeminalVesicleAdult_CNhs12851_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3\ urlLabel FANTOM5 Details:\ SeminalVesicleAdult_CNhs12851_ctss_fwd SeminalVesicleAdult+ bigWig seminal vesicle, adult_CNhs12851_10201-103F3_forward 0 3549 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/seminal%20vesicle%2c%20adult.CNhs12851.10201-103F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel seminal vesicle, adult_CNhs12851_10201-103F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10201-103F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SeminalVesicleAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SeminalVesicleAdult_CNhs12851_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3\ urlLabel FANTOM5 Details:\ SeminalVesicleAdult_CNhs12851_tpm_rev SeminalVesicleAdult- bigWig seminal vesicle, adult_CNhs12851_10201-103F3_reverse 1 3550 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/seminal%20vesicle%2c%20adult.CNhs12851.10201-103F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel seminal vesicle, adult_CNhs12851_10201-103F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10201-103F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SeminalVesicleAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SeminalVesicleAdult_CNhs12851_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3\ urlLabel FANTOM5 Details:\ SeminalVesicleAdult_CNhs12851_ctss_rev SeminalVesicleAdult- bigWig seminal vesicle, adult_CNhs12851_10201-103F3_reverse 0 3550 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/seminal%20vesicle%2c%20adult.CNhs12851.10201-103F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel seminal vesicle, adult_CNhs12851_10201-103F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10201-103F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SeminalVesicleAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SeminalVesicleAdult_CNhs12851_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3\ urlLabel FANTOM5 Details:\ SkeletalMuscleAdultPool1_CNhs10629_tpm_fwd SkeletalMuscleAdultPl1+ bigWig skeletal muscle, adult, pool1_CNhs10629_10023-101D5_forward 1 3551 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%2c%20adult%2c%20pool1.CNhs10629.10023-101D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel skeletal muscle, adult, pool1_CNhs10629_10023-101D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10023-101D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkeletalMuscleAdultPool1_CNhs10629_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5\ urlLabel FANTOM5 Details:\ SkeletalMuscleAdultPool1_CNhs10629_ctss_fwd SkeletalMuscleAdultPl1+ bigWig skeletal muscle, adult, pool1_CNhs10629_10023-101D5_forward 0 3551 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%2c%20adult%2c%20pool1.CNhs10629.10023-101D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel skeletal muscle, adult, pool1_CNhs10629_10023-101D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10023-101D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkeletalMuscleAdultPool1_CNhs10629_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5\ urlLabel FANTOM5 Details:\ SkeletalMuscleAdultPool1_CNhs10629_tpm_rev SkeletalMuscleAdultPl1- bigWig skeletal muscle, adult, pool1_CNhs10629_10023-101D5_reverse 1 3552 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%2c%20adult%2c%20pool1.CNhs10629.10023-101D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel skeletal muscle, adult, pool1_CNhs10629_10023-101D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10023-101D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkeletalMuscleAdultPool1_CNhs10629_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5\ urlLabel FANTOM5 Details:\ SkeletalMuscleAdultPool1_CNhs10629_ctss_rev SkeletalMuscleAdultPl1- bigWig skeletal muscle, adult, pool1_CNhs10629_10023-101D5_reverse 0 3552 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%2c%20adult%2c%20pool1.CNhs10629.10023-101D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel skeletal muscle, adult, pool1_CNhs10629_10023-101D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10023-101D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkeletalMuscleAdultPool1_CNhs10629_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5\ urlLabel FANTOM5 Details:\ SkeletalMuscleFetalDonor1_CNhs11776_tpm_fwd SkeletalMuscleFetalD1+ bigWig skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_forward 1 3553 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%2c%20fetal%2c%20donor1.CNhs11776.10066-101I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10066-101I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkeletalMuscleFetalDonor1_CNhs11776_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3\ urlLabel FANTOM5 Details:\ SkeletalMuscleFetalDonor1_CNhs11776_ctss_fwd SkeletalMuscleFetalD1+ bigWig skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_forward 0 3553 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%2c%20fetal%2c%20donor1.CNhs11776.10066-101I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10066-101I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkeletalMuscleFetalDonor1_CNhs11776_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3\ urlLabel FANTOM5 Details:\ SkeletalMuscleFetalDonor1_CNhs11776_tpm_rev SkeletalMuscleFetalD1- bigWig skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_reverse 1 3554 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%2c%20fetal%2c%20donor1.CNhs11776.10066-101I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10066-101I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkeletalMuscleFetalDonor1_CNhs11776_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3\ urlLabel FANTOM5 Details:\ SkeletalMuscleFetalDonor1_CNhs11776_ctss_rev SkeletalMuscleFetalD1- bigWig skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_reverse 0 3554 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%2c%20fetal%2c%20donor1.CNhs11776.10066-101I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10066-101I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkeletalMuscleFetalDonor1_CNhs11776_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3\ urlLabel FANTOM5 Details:\ SkeletalMuscleSoleusMuscleDonor1_CNhs13454_tpm_fwd SkeletalMuscleSoleusMuscleD1+ bigWig skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_forward 1 3555 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%20-%20soleus%20muscle%2c%20donor1.CNhs13454.10282-104F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10282-104F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleSoleusMuscleD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkeletalMuscleSoleusMuscleDonor1_CNhs13454_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3\ urlLabel FANTOM5 Details:\ SkeletalMuscleSoleusMuscleDonor1_CNhs13454_ctss_fwd SkeletalMuscleSoleusMuscleD1+ bigWig skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_forward 0 3555 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%20-%20soleus%20muscle%2c%20donor1.CNhs13454.10282-104F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10282-104F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleSoleusMuscleD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkeletalMuscleSoleusMuscleDonor1_CNhs13454_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3\ urlLabel FANTOM5 Details:\ SkeletalMuscleSoleusMuscleDonor1_CNhs13454_tpm_rev SkeletalMuscleSoleusMuscleD1- bigWig skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_reverse 1 3556 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%20-%20soleus%20muscle%2c%20donor1.CNhs13454.10282-104F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10282-104F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleSoleusMuscleD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkeletalMuscleSoleusMuscleDonor1_CNhs13454_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3\ urlLabel FANTOM5 Details:\ SkeletalMuscleSoleusMuscleDonor1_CNhs13454_ctss_rev SkeletalMuscleSoleusMuscleD1- bigWig skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_reverse 0 3556 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%20-%20soleus%20muscle%2c%20donor1.CNhs13454.10282-104F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10282-104F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleSoleusMuscleD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkeletalMuscleSoleusMuscleDonor1_CNhs13454_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3\ urlLabel FANTOM5 Details:\ SkinAdultDonor1_CNhs11785_tpm_fwd SkinAdultD1+ bigWig skin, adult, donor1_CNhs11785_10074-102A2_forward 1 3557 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skin%2c%20adult%2c%20donor1.CNhs11785.10074-102A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel skin, adult, donor1_CNhs11785_10074-102A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10074-102A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkinAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkinAdultDonor1_CNhs11785_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2\ urlLabel FANTOM5 Details:\ SkinAdultDonor1_CNhs11785_ctss_fwd SkinAdultD1+ bigWig skin, adult, donor1_CNhs11785_10074-102A2_forward 0 3557 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skin%2c%20adult%2c%20donor1.CNhs11785.10074-102A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel skin, adult, donor1_CNhs11785_10074-102A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10074-102A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkinAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkinAdultDonor1_CNhs11785_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2\ urlLabel FANTOM5 Details:\ SkinAdultDonor1_CNhs11785_tpm_rev SkinAdultD1- bigWig skin, adult, donor1_CNhs11785_10074-102A2_reverse 1 3558 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skin%2c%20adult%2c%20donor1.CNhs11785.10074-102A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel skin, adult, donor1_CNhs11785_10074-102A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10074-102A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkinAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkinAdultDonor1_CNhs11785_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2\ urlLabel FANTOM5 Details:\ SkinAdultDonor1_CNhs11785_ctss_rev SkinAdultD1- bigWig skin, adult, donor1_CNhs11785_10074-102A2_reverse 0 3558 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skin%2c%20adult%2c%20donor1.CNhs11785.10074-102A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel skin, adult, donor1_CNhs11785_10074-102A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10074-102A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkinAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkinAdultDonor1_CNhs11785_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2\ urlLabel FANTOM5 Details:\ SkinFetalDonor1_CNhs11774_tpm_fwd SkinFetalD1+ bigWig skin, fetal, donor1_CNhs11774_10065-101I2_forward 1 3559 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skin%2c%20fetal%2c%20donor1.CNhs11774.10065-101I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel skin, fetal, donor1_CNhs11774_10065-101I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10065-101I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkinFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkinFetalDonor1_CNhs11774_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2\ urlLabel FANTOM5 Details:\ SkinFetalDonor1_CNhs11774_ctss_fwd SkinFetalD1+ bigWig skin, fetal, donor1_CNhs11774_10065-101I2_forward 0 3559 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skin%2c%20fetal%2c%20donor1.CNhs11774.10065-101I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel skin, fetal, donor1_CNhs11774_10065-101I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10065-101I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkinFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkinFetalDonor1_CNhs11774_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2\ urlLabel FANTOM5 Details:\ SkinFetalDonor1_CNhs11774_tpm_rev SkinFetalD1- bigWig skin, fetal, donor1_CNhs11774_10065-101I2_reverse 1 3560 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skin%2c%20fetal%2c%20donor1.CNhs11774.10065-101I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel skin, fetal, donor1_CNhs11774_10065-101I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10065-101I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkinFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkinFetalDonor1_CNhs11774_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2\ urlLabel FANTOM5 Details:\ SkinFetalDonor1_CNhs11774_ctss_rev SkinFetalD1- bigWig skin, fetal, donor1_CNhs11774_10065-101I2_reverse 0 3560 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skin%2c%20fetal%2c%20donor1.CNhs11774.10065-101I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel skin, fetal, donor1_CNhs11774_10065-101I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10065-101I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkinFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkinFetalDonor1_CNhs11774_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2\ urlLabel FANTOM5 Details:\ SkinPalmDonor1_CNhs13458_tpm_fwd SkinPalmD1+ bigWig Skin - palm, donor1_CNhs13458_10286-104F7_forward 1 3561 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skin%20-%20palm%2c%20donor1.CNhs13458.10286-104F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Skin - palm, donor1_CNhs13458_10286-104F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10286-104F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkinPalmD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkinPalmDonor1_CNhs13458_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7\ urlLabel FANTOM5 Details:\ SkinPalmDonor1_CNhs13458_ctss_fwd SkinPalmD1+ bigWig Skin - palm, donor1_CNhs13458_10286-104F7_forward 0 3561 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skin%20-%20palm%2c%20donor1.CNhs13458.10286-104F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Skin - palm, donor1_CNhs13458_10286-104F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10286-104F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkinPalmD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkinPalmDonor1_CNhs13458_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7\ urlLabel FANTOM5 Details:\ SkinPalmDonor1_CNhs13458_tpm_rev SkinPalmD1- bigWig Skin - palm, donor1_CNhs13458_10286-104F7_reverse 1 3562 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skin%20-%20palm%2c%20donor1.CNhs13458.10286-104F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Skin - palm, donor1_CNhs13458_10286-104F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10286-104F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkinPalmD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkinPalmDonor1_CNhs13458_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7\ urlLabel FANTOM5 Details:\ SkinPalmDonor1_CNhs13458_ctss_rev SkinPalmD1- bigWig Skin - palm, donor1_CNhs13458_10286-104F7_reverse 0 3562 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skin%20-%20palm%2c%20donor1.CNhs13458.10286-104F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Skin - palm, donor1_CNhs13458_10286-104F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10286-104F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkinPalmD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkinPalmDonor1_CNhs13458_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7\ urlLabel FANTOM5 Details:\ SmallIntestineAdultPool1_CNhs10630_tpm_fwd SmallIntestineAdultPl1+ bigWig small intestine, adult, pool1_CNhs10630_10024-101D6_forward 1 3563 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20intestine%2c%20adult%2c%20pool1.CNhs10630.10024-101D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel small intestine, adult, pool1_CNhs10630_10024-101D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10024-101D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallIntestineAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SmallIntestineAdultPool1_CNhs10630_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6\ urlLabel FANTOM5 Details:\ SmallIntestineAdultPool1_CNhs10630_ctss_fwd SmallIntestineAdultPl1+ bigWig small intestine, adult, pool1_CNhs10630_10024-101D6_forward 0 3563 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20intestine%2c%20adult%2c%20pool1.CNhs10630.10024-101D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel small intestine, adult, pool1_CNhs10630_10024-101D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10024-101D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallIntestineAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SmallIntestineAdultPool1_CNhs10630_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6\ urlLabel FANTOM5 Details:\ SmallIntestineAdultPool1_CNhs10630_tpm_rev SmallIntestineAdultPl1- bigWig small intestine, adult, pool1_CNhs10630_10024-101D6_reverse 1 3564 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20intestine%2c%20adult%2c%20pool1.CNhs10630.10024-101D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel small intestine, adult, pool1_CNhs10630_10024-101D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10024-101D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallIntestineAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SmallIntestineAdultPool1_CNhs10630_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6\ urlLabel FANTOM5 Details:\ SmallIntestineAdultPool1_CNhs10630_ctss_rev SmallIntestineAdultPl1- bigWig small intestine, adult, pool1_CNhs10630_10024-101D6_reverse 0 3564 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20intestine%2c%20adult%2c%20pool1.CNhs10630.10024-101D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel small intestine, adult, pool1_CNhs10630_10024-101D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10024-101D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallIntestineAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SmallIntestineAdultPool1_CNhs10630_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6\ urlLabel FANTOM5 Details:\ SmallIntestineFetalDonor1_CNhs11773_tpm_fwd SmallIntestineFetalD1+ bigWig small intestine, fetal, donor1_CNhs11773_10064-101I1_forward 1 3565 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20intestine%2c%20fetal%2c%20donor1.CNhs11773.10064-101I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel small intestine, fetal, donor1_CNhs11773_10064-101I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10064-101I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallIntestineFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SmallIntestineFetalDonor1_CNhs11773_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1\ urlLabel FANTOM5 Details:\ SmallIntestineFetalDonor1_CNhs11773_ctss_fwd SmallIntestineFetalD1+ bigWig small intestine, fetal, donor1_CNhs11773_10064-101I1_forward 0 3565 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20intestine%2c%20fetal%2c%20donor1.CNhs11773.10064-101I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel small intestine, fetal, donor1_CNhs11773_10064-101I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10064-101I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallIntestineFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SmallIntestineFetalDonor1_CNhs11773_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1\ urlLabel FANTOM5 Details:\ SmallIntestineFetalDonor1_CNhs11773_tpm_rev SmallIntestineFetalD1- bigWig small intestine, fetal, donor1_CNhs11773_10064-101I1_reverse 1 3566 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20intestine%2c%20fetal%2c%20donor1.CNhs11773.10064-101I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel small intestine, fetal, donor1_CNhs11773_10064-101I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10064-101I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallIntestineFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SmallIntestineFetalDonor1_CNhs11773_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1\ urlLabel FANTOM5 Details:\ SmallIntestineFetalDonor1_CNhs11773_ctss_rev SmallIntestineFetalD1- bigWig small intestine, fetal, donor1_CNhs11773_10064-101I1_reverse 0 3566 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20intestine%2c%20fetal%2c%20donor1.CNhs11773.10064-101I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel small intestine, fetal, donor1_CNhs11773_10064-101I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10064-101I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallIntestineFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SmallIntestineFetalDonor1_CNhs11773_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1\ urlLabel FANTOM5 Details:\ SmoothMuscleAdultPool1_CNhs11755_tpm_fwd SmoothMuscleAdultPl1+ bigWig smooth muscle, adult, pool1_CNhs11755_10048-101G3_forward 1 3567 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/smooth%20muscle%2c%20adult%2c%20pool1.CNhs11755.10048-101G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel smooth muscle, adult, pool1_CNhs11755_10048-101G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10048-101G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmoothMuscleAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SmoothMuscleAdultPool1_CNhs11755_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3\ urlLabel FANTOM5 Details:\ SmoothMuscleAdultPool1_CNhs11755_ctss_fwd SmoothMuscleAdultPl1+ bigWig smooth muscle, adult, pool1_CNhs11755_10048-101G3_forward 0 3567 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/smooth%20muscle%2c%20adult%2c%20pool1.CNhs11755.10048-101G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel smooth muscle, adult, pool1_CNhs11755_10048-101G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10048-101G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmoothMuscleAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SmoothMuscleAdultPool1_CNhs11755_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3\ urlLabel FANTOM5 Details:\ SmoothMuscleAdultPool1_CNhs11755_tpm_rev SmoothMuscleAdultPl1- bigWig smooth muscle, adult, pool1_CNhs11755_10048-101G3_reverse 1 3568 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/smooth%20muscle%2c%20adult%2c%20pool1.CNhs11755.10048-101G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel smooth muscle, adult, pool1_CNhs11755_10048-101G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10048-101G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmoothMuscleAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SmoothMuscleAdultPool1_CNhs11755_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3\ urlLabel FANTOM5 Details:\ SmoothMuscleAdultPool1_CNhs11755_ctss_rev SmoothMuscleAdultPl1- bigWig smooth muscle, adult, pool1_CNhs11755_10048-101G3_reverse 0 3568 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/smooth%20muscle%2c%20adult%2c%20pool1.CNhs11755.10048-101G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel smooth muscle, adult, pool1_CNhs11755_10048-101G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10048-101G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmoothMuscleAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SmoothMuscleAdultPool1_CNhs11755_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10196_CNhs13807_tpm_fwd SpinalCordAdultD10196+ bigWig spinal cord - adult, donor10196_CNhs13807_10181-103D1_forward 1 3569 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%20-%20adult%2c%20donor10196.CNhs13807.10181-103D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel spinal cord - adult, donor10196_CNhs13807_10181-103D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10181-103D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordAdultDonor10196_CNhs13807_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10196_CNhs13807_ctss_fwd SpinalCordAdultD10196+ bigWig spinal cord - adult, donor10196_CNhs13807_10181-103D1_forward 0 3569 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%20-%20adult%2c%20donor10196.CNhs13807.10181-103D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel spinal cord - adult, donor10196_CNhs13807_10181-103D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10181-103D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordAdultDonor10196_CNhs13807_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10196_CNhs13807_tpm_rev SpinalCordAdultD10196- bigWig spinal cord - adult, donor10196_CNhs13807_10181-103D1_reverse 1 3570 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%20-%20adult%2c%20donor10196.CNhs13807.10181-103D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel spinal cord - adult, donor10196_CNhs13807_10181-103D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10181-103D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordAdultDonor10196_CNhs13807_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10196_CNhs13807_ctss_rev SpinalCordAdultD10196- bigWig spinal cord - adult, donor10196_CNhs13807_10181-103D1_reverse 0 3570 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%20-%20adult%2c%20donor10196.CNhs13807.10181-103D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel spinal cord - adult, donor10196_CNhs13807_10181-103D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10181-103D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordAdultDonor10196_CNhs13807_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10252_CNhs12227_tpm_fwd SpinalCordAdultD10252+ bigWig spinal cord, adult, donor10252_CNhs12227_10159-103A6_forward 1 3571 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20adult%2c%20donor10252.CNhs12227.10159-103A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel spinal cord, adult, donor10252_CNhs12227_10159-103A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10159-103A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordAdultDonor10252_CNhs12227_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10252_CNhs12227_ctss_fwd SpinalCordAdultD10252+ bigWig spinal cord, adult, donor10252_CNhs12227_10159-103A6_forward 0 3571 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20adult%2c%20donor10252.CNhs12227.10159-103A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel spinal cord, adult, donor10252_CNhs12227_10159-103A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10159-103A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordAdultDonor10252_CNhs12227_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10252_CNhs12227_tpm_rev SpinalCordAdultD10252- bigWig spinal cord, adult, donor10252_CNhs12227_10159-103A6_reverse 1 3572 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20adult%2c%20donor10252.CNhs12227.10159-103A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel spinal cord, adult, donor10252_CNhs12227_10159-103A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10159-103A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordAdultDonor10252_CNhs12227_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10252_CNhs12227_ctss_rev SpinalCordAdultD10252- bigWig spinal cord, adult, donor10252_CNhs12227_10159-103A6_reverse 0 3572 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20adult%2c%20donor10252.CNhs12227.10159-103A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel spinal cord, adult, donor10252_CNhs12227_10159-103A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10159-103A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordAdultDonor10252_CNhs12227_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10258_CNhs14222_tpm_fwd SpinalCordAdultD10258+ bigWig spinal cord, adult, donor10258_CNhs14222_10369-105F9_forward 1 3573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20adult%2c%20donor10258.CNhs14222.10369-105F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel spinal cord, adult, donor10258_CNhs14222_10369-105F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10369-105F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordAdultDonor10258_CNhs14222_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10258_CNhs14222_ctss_fwd SpinalCordAdultD10258+ bigWig spinal cord, adult, donor10258_CNhs14222_10369-105F9_forward 0 3573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20adult%2c%20donor10258.CNhs14222.10369-105F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel spinal cord, adult, donor10258_CNhs14222_10369-105F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10369-105F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordAdultDonor10258_CNhs14222_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10258_CNhs14222_tpm_rev SpinalCordAdultD10258- bigWig spinal cord, adult, donor10258_CNhs14222_10369-105F9_reverse 1 3574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20adult%2c%20donor10258.CNhs14222.10369-105F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel spinal cord, adult, donor10258_CNhs14222_10369-105F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10369-105F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordAdultDonor10258_CNhs14222_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10258_CNhs14222_ctss_rev SpinalCordAdultD10258- bigWig spinal cord, adult, donor10258_CNhs14222_10369-105F9_reverse 0 3574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20adult%2c%20donor10258.CNhs14222.10369-105F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel spinal cord, adult, donor10258_CNhs14222_10369-105F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10369-105F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordAdultDonor10258_CNhs14222_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9\ urlLabel FANTOM5 Details:\ SpinalCordFetalDonor1_CNhs11764_tpm_fwd SpinalCordFetalD1+ bigWig spinal cord, fetal, donor1_CNhs11764_10056-101H2_forward 1 3575 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20fetal%2c%20donor1.CNhs11764.10056-101H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel spinal cord, fetal, donor1_CNhs11764_10056-101H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10056-101H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordFetalDonor1_CNhs11764_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2\ urlLabel FANTOM5 Details:\ SpinalCordFetalDonor1_CNhs11764_ctss_fwd SpinalCordFetalD1+ bigWig spinal cord, fetal, donor1_CNhs11764_10056-101H2_forward 0 3575 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20fetal%2c%20donor1.CNhs11764.10056-101H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel spinal cord, fetal, donor1_CNhs11764_10056-101H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10056-101H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordFetalDonor1_CNhs11764_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2\ urlLabel FANTOM5 Details:\ SpinalCordFetalDonor1_CNhs11764_tpm_rev SpinalCordFetalD1- bigWig spinal cord, fetal, donor1_CNhs11764_10056-101H2_reverse 1 3576 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20fetal%2c%20donor1.CNhs11764.10056-101H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel spinal cord, fetal, donor1_CNhs11764_10056-101H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10056-101H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordFetalDonor1_CNhs11764_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2\ urlLabel FANTOM5 Details:\ SpinalCordFetalDonor1_CNhs11764_ctss_rev SpinalCordFetalD1- bigWig spinal cord, fetal, donor1_CNhs11764_10056-101H2_reverse 0 3576 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20fetal%2c%20donor1.CNhs11764.10056-101H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel spinal cord, fetal, donor1_CNhs11764_10056-101H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10056-101H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordFetalDonor1_CNhs11764_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2\ urlLabel FANTOM5 Details:\ SpinalCordNewbornDonor10223_CNhs14077_tpm_fwd SpinalCordNbD10223+ bigWig spinal cord, newborn, donor10223_CNhs14077_10359-105E8_forward 1 3577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20newborn%2c%20donor10223.CNhs14077.10359-105E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel spinal cord, newborn, donor10223_CNhs14077_10359-105E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10359-105E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordNewbornDonor10223_CNhs14077_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8\ urlLabel FANTOM5 Details:\ SpinalCordNewbornDonor10223_CNhs14077_ctss_fwd SpinalCordNbD10223+ bigWig spinal cord, newborn, donor10223_CNhs14077_10359-105E8_forward 0 3577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20newborn%2c%20donor10223.CNhs14077.10359-105E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel spinal cord, newborn, donor10223_CNhs14077_10359-105E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10359-105E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordNewbornDonor10223_CNhs14077_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8\ urlLabel FANTOM5 Details:\ SpinalCordNewbornDonor10223_CNhs14077_tpm_rev SpinalCordNbD10223- bigWig spinal cord, newborn, donor10223_CNhs14077_10359-105E8_reverse 1 3578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20newborn%2c%20donor10223.CNhs14077.10359-105E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel spinal cord, newborn, donor10223_CNhs14077_10359-105E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10359-105E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordNewbornDonor10223_CNhs14077_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8\ urlLabel FANTOM5 Details:\ SpinalCordNewbornDonor10223_CNhs14077_ctss_rev SpinalCordNbD10223- bigWig spinal cord, newborn, donor10223_CNhs14077_10359-105E8_reverse 0 3578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20newborn%2c%20donor10223.CNhs14077.10359-105E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel spinal cord, newborn, donor10223_CNhs14077_10359-105E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10359-105E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordNewbornDonor10223_CNhs14077_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8\ urlLabel FANTOM5 Details:\ SpleenAdultPool1_CNhs10631_tpm_fwd SpleenAdultPl1+ bigWig spleen, adult, pool1_CNhs10631_10025-101D7_forward 1 3579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spleen%2c%20adult%2c%20pool1.CNhs10631.10025-101D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel spleen, adult, pool1_CNhs10631_10025-101D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10025-101D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpleenAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpleenAdultPool1_CNhs10631_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7\ urlLabel FANTOM5 Details:\ SpleenAdultPool1_CNhs10631_ctss_fwd SpleenAdultPl1+ bigWig spleen, adult, pool1_CNhs10631_10025-101D7_forward 0 3579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spleen%2c%20adult%2c%20pool1.CNhs10631.10025-101D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel spleen, adult, pool1_CNhs10631_10025-101D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10025-101D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpleenAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpleenAdultPool1_CNhs10631_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7\ urlLabel FANTOM5 Details:\ SpleenAdultPool1_CNhs10631_tpm_rev SpleenAdultPl1- bigWig spleen, adult, pool1_CNhs10631_10025-101D7_reverse 1 3580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spleen%2c%20adult%2c%20pool1.CNhs10631.10025-101D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel spleen, adult, pool1_CNhs10631_10025-101D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10025-101D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpleenAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpleenAdultPool1_CNhs10631_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7\ urlLabel FANTOM5 Details:\ SpleenAdultPool1_CNhs10631_ctss_rev SpleenAdultPl1- bigWig spleen, adult, pool1_CNhs10631_10025-101D7_reverse 0 3580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spleen%2c%20adult%2c%20pool1.CNhs10631.10025-101D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel spleen, adult, pool1_CNhs10631_10025-101D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10025-101D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpleenAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpleenAdultPool1_CNhs10631_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7\ urlLabel FANTOM5 Details:\ SpleenFetalPool1_CNhs10651_tpm_fwd SpleenFetalPl1+ bigWig spleen, fetal, pool1_CNhs10651_10044-101F8_forward 1 3581 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spleen%2c%20fetal%2c%20pool1.CNhs10651.10044-101F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel spleen, fetal, pool1_CNhs10651_10044-101F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10044-101F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpleenFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpleenFetalPool1_CNhs10651_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8\ urlLabel FANTOM5 Details:\ SpleenFetalPool1_CNhs10651_ctss_fwd SpleenFetalPl1+ bigWig spleen, fetal, pool1_CNhs10651_10044-101F8_forward 0 3581 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spleen%2c%20fetal%2c%20pool1.CNhs10651.10044-101F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel spleen, fetal, pool1_CNhs10651_10044-101F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10044-101F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpleenFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpleenFetalPool1_CNhs10651_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8\ urlLabel FANTOM5 Details:\ SpleenFetalPool1_CNhs10651_tpm_rev SpleenFetalPl1- bigWig spleen, fetal, pool1_CNhs10651_10044-101F8_reverse 1 3582 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spleen%2c%20fetal%2c%20pool1.CNhs10651.10044-101F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel spleen, fetal, pool1_CNhs10651_10044-101F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10044-101F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpleenFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpleenFetalPool1_CNhs10651_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8\ urlLabel FANTOM5 Details:\ SpleenFetalPool1_CNhs10651_ctss_rev SpleenFetalPl1- bigWig spleen, fetal, pool1_CNhs10651_10044-101F8_reverse 0 3582 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spleen%2c%20fetal%2c%20pool1.CNhs10651.10044-101F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel spleen, fetal, pool1_CNhs10651_10044-101F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10044-101F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpleenFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpleenFetalPool1_CNhs10651_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8\ urlLabel FANTOM5 Details:\ StomachFetalDonor1_CNhs11771_tpm_fwd StomachFetalD1+ bigWig stomach, fetal, donor1_CNhs11771_10062-101H8_forward 1 3583 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/stomach%2c%20fetal%2c%20donor1.CNhs11771.10062-101H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel stomach, fetal, donor1_CNhs11771_10062-101H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10062-101H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel StomachFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track StomachFetalDonor1_CNhs11771_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8\ urlLabel FANTOM5 Details:\ StomachFetalDonor1_CNhs11771_ctss_fwd StomachFetalD1+ bigWig stomach, fetal, donor1_CNhs11771_10062-101H8_forward 0 3583 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/stomach%2c%20fetal%2c%20donor1.CNhs11771.10062-101H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel stomach, fetal, donor1_CNhs11771_10062-101H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10062-101H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel StomachFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track StomachFetalDonor1_CNhs11771_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8\ urlLabel FANTOM5 Details:\ StomachFetalDonor1_CNhs11771_tpm_rev StomachFetalD1- bigWig stomach, fetal, donor1_CNhs11771_10062-101H8_reverse 1 3584 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/stomach%2c%20fetal%2c%20donor1.CNhs11771.10062-101H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel stomach, fetal, donor1_CNhs11771_10062-101H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10062-101H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel StomachFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track StomachFetalDonor1_CNhs11771_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8\ urlLabel FANTOM5 Details:\ StomachFetalDonor1_CNhs11771_ctss_rev StomachFetalD1- bigWig stomach, fetal, donor1_CNhs11771_10062-101H8_reverse 0 3584 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/stomach%2c%20fetal%2c%20donor1.CNhs11771.10062-101H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel stomach, fetal, donor1_CNhs11771_10062-101H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10062-101H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel StomachFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track StomachFetalDonor1_CNhs11771_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8\ urlLabel FANTOM5 Details:\ SubmaxillaryGlandAdult_CNhs12852_tpm_fwd SubmaxillaryGlandAdult+ bigWig submaxillary gland, adult_CNhs12852_10202-103F4_forward 1 3585 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/submaxillary%20gland%2c%20adult.CNhs12852.10202-103F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel submaxillary gland, adult_CNhs12852_10202-103F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10202-103F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubmaxillaryGlandAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubmaxillaryGlandAdult_CNhs12852_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4\ urlLabel FANTOM5 Details:\ SubmaxillaryGlandAdult_CNhs12852_ctss_fwd SubmaxillaryGlandAdult+ bigWig submaxillary gland, adult_CNhs12852_10202-103F4_forward 0 3585 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/submaxillary%20gland%2c%20adult.CNhs12852.10202-103F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel submaxillary gland, adult_CNhs12852_10202-103F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10202-103F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubmaxillaryGlandAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubmaxillaryGlandAdult_CNhs12852_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4\ urlLabel FANTOM5 Details:\ SubmaxillaryGlandAdult_CNhs12852_tpm_rev SubmaxillaryGlandAdult- bigWig submaxillary gland, adult_CNhs12852_10202-103F4_reverse 1 3586 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/submaxillary%20gland%2c%20adult.CNhs12852.10202-103F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel submaxillary gland, adult_CNhs12852_10202-103F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10202-103F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubmaxillaryGlandAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubmaxillaryGlandAdult_CNhs12852_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4\ urlLabel FANTOM5 Details:\ SubmaxillaryGlandAdult_CNhs12852_ctss_rev SubmaxillaryGlandAdult- bigWig submaxillary gland, adult_CNhs12852_10202-103F4_reverse 0 3586 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/submaxillary%20gland%2c%20adult.CNhs12852.10202-103F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel submaxillary gland, adult_CNhs12852_10202-103F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10202-103F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubmaxillaryGlandAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubmaxillaryGlandAdult_CNhs12852_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10196_CNhs13803_tpm_fwd SubstantiaNigraAdultD10196+ bigWig substantia nigra - adult, donor10196_CNhs13803_10178-103C7_forward 1 3587 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10178-103C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%20-%20adult%2c%20donor10196.CNhs13803.10178-103C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 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off\ shortLabel SubstantiaNigraAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraAdultDonor10196_CNhs13803_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10178-103C7\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10196_CNhs13803_tpm_rev SubstantiaNigraAdultD10196- bigWig substantia nigra - adult, donor10196_CNhs13803_10178-103C7_reverse 1 3588 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10178-103C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%20-%20adult%2c%20donor10196.CNhs13803.10178-103C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel substantia nigra - adult, donor10196_CNhs13803_10178-103C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10178-103C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraAdultDonor10196_CNhs13803_tpm_rev\ type bigWig\ url 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/gbdb/hg38/fantom5/substantia%20nigra%2c%20adult%2c%20donor10252.CNhs12318.10158-103A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel substantia nigra, adult, donor10252_CNhs12318_10158-103A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10158-103A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraAdultDonor10252_CNhs12318_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10158-103A5\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10252_CNhs12318_tpm_rev SubstantiaNigraAdultD10252- bigWig substantia nigra, adult, donor10252_CNhs12318_10158-103A5_reverse 1 3590 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10158-103A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20adult%2c%20donor10252.CNhs12318.10158-103A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel substantia nigra, adult, donor10252_CNhs12318_10158-103A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10158-103A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraAdultDonor10252_CNhs12318_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10158-103A5\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10252_CNhs12318_ctss_rev SubstantiaNigraAdultD10252- bigWig substantia nigra, adult, donor10252_CNhs12318_10158-103A5_reverse 0 3590 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10158-103A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20adult%2c%20donor10252.CNhs12318.10158-103A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel substantia nigra, adult, donor10252_CNhs12318_10158-103A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10158-103A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel 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http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10258_CNhs14224_ctss_fwd SubstantiaNigraAdultD10258+ bigWig substantia nigra, adult, donor10258_CNhs14224_10371-105G2_forward 0 3591 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20adult%2c%20donor10258.CNhs14224.10371-105G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel substantia nigra, adult, donor10258_CNhs14224_10371-105G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10371-105G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraAdultDonor10258_CNhs14224_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10258_CNhs14224_tpm_rev SubstantiaNigraAdultD10258- bigWig substantia nigra, adult, donor10258_CNhs14224_10371-105G2_reverse 1 3592 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20adult%2c%20donor10258.CNhs14224.10371-105G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel substantia nigra, adult, donor10258_CNhs14224_10371-105G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10371-105G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraAdultDonor10258_CNhs14224_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10258_CNhs14224_ctss_rev SubstantiaNigraAdultD10258- bigWig substantia nigra, adult, donor10258_CNhs14224_10371-105G2_reverse 0 3592 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20adult%2c%20donor10258.CNhs14224.10371-105G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel substantia nigra, adult, donor10258_CNhs14224_10371-105G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10371-105G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraAdultDonor10258_CNhs14224_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2\ urlLabel FANTOM5 Details:\ SubstantiaNigraNewbornDonor10223_CNhs14076_tpm_fwd SubstantiaNigraNbD10223+ bigWig substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_forward 1 3593 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20newborn%2c%20donor10223.CNhs14076.10358-105E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10358-105E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraNewbornDonor10223_CNhs14076_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7\ urlLabel FANTOM5 Details:\ SubstantiaNigraNewbornDonor10223_CNhs14076_ctss_fwd SubstantiaNigraNbD10223+ bigWig substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_forward 0 3593 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20newborn%2c%20donor10223.CNhs14076.10358-105E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10358-105E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraNewbornDonor10223_CNhs14076_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7\ urlLabel FANTOM5 Details:\ SubstantiaNigraNewbornDonor10223_CNhs14076_tpm_rev SubstantiaNigraNbD10223- bigWig substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_reverse 1 3594 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20newborn%2c%20donor10223.CNhs14076.10358-105E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10358-105E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraNewbornDonor10223_CNhs14076_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7\ urlLabel FANTOM5 Details:\ SubstantiaNigraNewbornDonor10223_CNhs14076_ctss_rev SubstantiaNigraNbD10223- bigWig substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_reverse 0 3594 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20newborn%2c%20donor10223.CNhs14076.10358-105E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10358-105E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraNewbornDonor10223_CNhs14076_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7\ urlLabel FANTOM5 Details:\ TemporalLobeAdultPool1_CNhs10637_tpm_fwd TemporalLobeAdultPl1+ bigWig temporal lobe, adult, pool1_CNhs10637_10031-101E4_forward 1 3595 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20adult%2c%20pool1.CNhs10637.10031-101E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel temporal lobe, adult, pool1_CNhs10637_10031-101E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10031-101E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TemporalLobeAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TemporalLobeAdultPool1_CNhs10637_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4\ urlLabel FANTOM5 Details:\ TemporalLobeAdultPool1_CNhs10637_ctss_fwd TemporalLobeAdultPl1+ bigWig temporal lobe, adult, pool1_CNhs10637_10031-101E4_forward 0 3595 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20adult%2c%20pool1.CNhs10637.10031-101E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel temporal lobe, adult, pool1_CNhs10637_10031-101E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10031-101E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TemporalLobeAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TemporalLobeAdultPool1_CNhs10637_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4\ urlLabel FANTOM5 Details:\ TemporalLobeAdultPool1_CNhs10637_tpm_rev TemporalLobeAdultPl1- bigWig temporal lobe, adult, pool1_CNhs10637_10031-101E4_reverse 1 3596 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20adult%2c%20pool1.CNhs10637.10031-101E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel temporal lobe, adult, pool1_CNhs10637_10031-101E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10031-101E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TemporalLobeAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TemporalLobeAdultPool1_CNhs10637_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4\ urlLabel FANTOM5 Details:\ TemporalLobeAdultPool1_CNhs10637_ctss_rev TemporalLobeAdultPl1- bigWig temporal lobe, adult, pool1_CNhs10637_10031-101E4_reverse 0 3596 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20adult%2c%20pool1.CNhs10637.10031-101E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel temporal lobe, adult, pool1_CNhs10637_10031-101E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10031-101E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TemporalLobeAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TemporalLobeAdultPool1_CNhs10637_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4\ urlLabel FANTOM5 Details:\ TemporalLobeFetalDonor1TechRep1_CNhs11772_tpm_fwd TemporalLobeFetalD1Tr1+ bigWig temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_forward 1 3597 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11772.10063-101H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TemporalLobeFetalD1Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TemporalLobeFetalDonor1TechRep1_CNhs11772_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ TemporalLobeFetalDonor1TechRep1_CNhs11772_ctss_fwd TemporalLobeFetalD1Tr1+ bigWig temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_forward 0 3597 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11772.10063-101H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TemporalLobeFetalD1Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TemporalLobeFetalDonor1TechRep1_CNhs11772_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ TemporalLobeFetalDonor1TechRep1_CNhs11772_tpm_rev TemporalLobeFetalD1Tr1- bigWig temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_reverse 1 3598 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11772.10063-101H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TemporalLobeFetalD1Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TemporalLobeFetalDonor1TechRep1_CNhs11772_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ TemporalLobeFetalDonor1TechRep1_CNhs11772_ctss_rev TemporalLobeFetalD1Tr1- bigWig temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_reverse 0 3598 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11772.10063-101H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TemporalLobeFetalD1Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TemporalLobeFetalDonor1TechRep1_CNhs11772_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ TemporalLobeFetalDonor1TechRep2_CNhs12996_tpm_fwd TemporalLobeFetalD1Tr2+ bigWig temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_forward 1 3599 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12996.10063-101H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TemporalLobeFetalD1Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TemporalLobeFetalDonor1TechRep2_CNhs12996_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ TemporalLobeFetalDonor1TechRep2_CNhs12996_ctss_fwd TemporalLobeFetalD1Tr2+ bigWig temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_forward 0 3599 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12996.10063-101H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TemporalLobeFetalD1Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TemporalLobeFetalDonor1TechRep2_CNhs12996_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ TemporalLobeFetalDonor1TechRep2_CNhs12996_tpm_rev TemporalLobeFetalD1Tr2- bigWig temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_reverse 1 3600 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12996.10063-101H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TemporalLobeFetalD1Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TemporalLobeFetalDonor1TechRep2_CNhs12996_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ TemporalLobeFetalDonor1TechRep2_CNhs12996_ctss_rev TemporalLobeFetalD1Tr2- bigWig temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_reverse 0 3600 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12996.10063-101H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TemporalLobeFetalD1Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TemporalLobeFetalDonor1TechRep2_CNhs12996_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ TestisAdultPool1_CNhs10632_tpm_fwd TestisAdultPl1+ bigWig testis, adult, pool1_CNhs10632_10026-101D8_forward 1 3601 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testis%2c%20adult%2c%20pool1.CNhs10632.10026-101D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel testis, adult, pool1_CNhs10632_10026-101D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10026-101D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TestisAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TestisAdultPool1_CNhs10632_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8\ urlLabel FANTOM5 Details:\ TestisAdultPool1_CNhs10632_ctss_fwd TestisAdultPl1+ bigWig testis, adult, pool1_CNhs10632_10026-101D8_forward 0 3601 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testis%2c%20adult%2c%20pool1.CNhs10632.10026-101D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel testis, adult, pool1_CNhs10632_10026-101D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10026-101D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TestisAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TestisAdultPool1_CNhs10632_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8\ urlLabel FANTOM5 Details:\ TestisAdultPool1_CNhs10632_tpm_rev TestisAdultPl1- bigWig testis, adult, pool1_CNhs10632_10026-101D8_reverse 1 3602 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testis%2c%20adult%2c%20pool1.CNhs10632.10026-101D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel testis, adult, pool1_CNhs10632_10026-101D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10026-101D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TestisAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TestisAdultPool1_CNhs10632_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8\ urlLabel FANTOM5 Details:\ TestisAdultPool1_CNhs10632_ctss_rev TestisAdultPl1- bigWig testis, adult, pool1_CNhs10632_10026-101D8_reverse 0 3602 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testis%2c%20adult%2c%20pool1.CNhs10632.10026-101D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel testis, adult, pool1_CNhs10632_10026-101D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10026-101D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TestisAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TestisAdultPool1_CNhs10632_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8\ urlLabel FANTOM5 Details:\ TestisAdultPool2_CNhs12998_tpm_fwd TestisAdultPl2+ bigWig testis, adult, pool2_CNhs12998_10096-102C6_forward 1 3603 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testis%2c%20adult%2c%20pool2.CNhs12998.10096-102C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel testis, adult, pool2_CNhs12998_10096-102C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10096-102C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TestisAdultPl2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TestisAdultPool2_CNhs12998_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6\ urlLabel FANTOM5 Details:\ TestisAdultPool2_CNhs12998_ctss_fwd TestisAdultPl2+ bigWig testis, adult, pool2_CNhs12998_10096-102C6_forward 0 3603 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testis%2c%20adult%2c%20pool2.CNhs12998.10096-102C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel testis, adult, pool2_CNhs12998_10096-102C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10096-102C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TestisAdultPl2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TestisAdultPool2_CNhs12998_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6\ urlLabel FANTOM5 Details:\ TestisAdultPool2_CNhs12998_tpm_rev TestisAdultPl2- bigWig testis, adult, pool2_CNhs12998_10096-102C6_reverse 1 3604 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testis%2c%20adult%2c%20pool2.CNhs12998.10096-102C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel testis, adult, pool2_CNhs12998_10096-102C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10096-102C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TestisAdultPl2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TestisAdultPool2_CNhs12998_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6\ urlLabel FANTOM5 Details:\ TestisAdultPool2_CNhs12998_ctss_rev TestisAdultPl2- bigWig testis, adult, pool2_CNhs12998_10096-102C6_reverse 0 3604 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testis%2c%20adult%2c%20pool2.CNhs12998.10096-102C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel testis, adult, pool2_CNhs12998_10096-102C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10096-102C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TestisAdultPl2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TestisAdultPool2_CNhs12998_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10196_CNhs13794_tpm_fwd ThalamusAdultD10196+ bigWig thalamus - adult, donor10196_CNhs13794_10168-103B6_forward 1 3605 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%20-%20adult%2c%20donor10196.CNhs13794.10168-103B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thalamus - adult, donor10196_CNhs13794_10168-103B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10168-103B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10196_CNhs13794_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10196_CNhs13794_ctss_fwd ThalamusAdultD10196+ bigWig thalamus - adult, donor10196_CNhs13794_10168-103B6_forward 0 3605 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%20-%20adult%2c%20donor10196.CNhs13794.10168-103B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thalamus - adult, donor10196_CNhs13794_10168-103B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10168-103B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10196_CNhs13794_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10196_CNhs13794_tpm_rev ThalamusAdultD10196- bigWig thalamus - adult, donor10196_CNhs13794_10168-103B6_reverse 1 3606 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%20-%20adult%2c%20donor10196.CNhs13794.10168-103B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thalamus - adult, donor10196_CNhs13794_10168-103B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10168-103B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10196_CNhs13794_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10196_CNhs13794_ctss_rev ThalamusAdultD10196- bigWig thalamus - adult, donor10196_CNhs13794_10168-103B6_reverse 0 3606 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%20-%20adult%2c%20donor10196.CNhs13794.10168-103B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thalamus - adult, donor10196_CNhs13794_10168-103B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10168-103B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10196_CNhs13794_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10252_CNhs12314_tpm_fwd ThalamusAdultD10252+ bigWig thalamus, adult, donor10252_CNhs12314_10154-103A1_forward 1 3607 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10252.CNhs12314.10154-103A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thalamus, adult, donor10252_CNhs12314_10154-103A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10154-103A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10252_CNhs12314_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10252_CNhs12314_ctss_fwd ThalamusAdultD10252+ bigWig thalamus, adult, donor10252_CNhs12314_10154-103A1_forward 0 3607 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10252.CNhs12314.10154-103A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thalamus, adult, donor10252_CNhs12314_10154-103A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10154-103A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10252_CNhs12314_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10252_CNhs12314_tpm_rev ThalamusAdultD10252- bigWig thalamus, adult, donor10252_CNhs12314_10154-103A1_reverse 1 3608 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10252.CNhs12314.10154-103A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thalamus, adult, donor10252_CNhs12314_10154-103A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10154-103A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10252_CNhs12314_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10252_CNhs12314_ctss_rev ThalamusAdultD10252- bigWig thalamus, adult, donor10252_CNhs12314_10154-103A1_reverse 0 3608 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10252.CNhs12314.10154-103A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thalamus, adult, donor10252_CNhs12314_10154-103A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10154-103A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10252_CNhs12314_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10258TechRep1_CNhs14223_tpm_fwd ThalamusAdultD10258Tr1+ bigWig thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_forward 1 3609 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14223.10370-105G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10258Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10258TechRep1_CNhs14223_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10258TechRep1_CNhs14223_ctss_fwd ThalamusAdultD10258Tr1+ bigWig thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_forward 0 3609 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14223.10370-105G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10258Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10258TechRep1_CNhs14223_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10258TechRep1_CNhs14223_tpm_rev ThalamusAdultD10258Tr1- bigWig thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_reverse 1 3610 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14223.10370-105G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10258Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10258TechRep1_CNhs14223_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10258TechRep1_CNhs14223_ctss_rev ThalamusAdultD10258Tr1- bigWig thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_reverse 0 3610 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14223.10370-105G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10258Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10258TechRep1_CNhs14223_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10258TechRep2_CNhs14551_tpm_fwd ThalamusAdultD10258Tr2+ bigWig thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_forward 1 3611 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14551.10370-105G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10258Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10258TechRep2_CNhs14551_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10258TechRep2_CNhs14551_ctss_fwd ThalamusAdultD10258Tr2+ bigWig thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_forward 0 3611 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14551.10370-105G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10258Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10258TechRep2_CNhs14551_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10258TechRep2_CNhs14551_tpm_rev ThalamusAdultD10258Tr2- bigWig thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_reverse 1 3612 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14551.10370-105G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10258Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10258TechRep2_CNhs14551_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10258TechRep2_CNhs14551_ctss_rev ThalamusAdultD10258Tr2- bigWig thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_reverse 0 3612 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14551.10370-105G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10258Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10258TechRep2_CNhs14551_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ ThalamusNewbornDonor10223_CNhs14084_tpm_fwd ThalamusNbD10223+ bigWig thalamus, newborn, donor10223_CNhs14084_10366-105F6_forward 1 3613 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20newborn%2c%20donor10223.CNhs14084.10366-105F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thalamus, newborn, donor10223_CNhs14084_10366-105F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10366-105F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusNewbornDonor10223_CNhs14084_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6\ urlLabel FANTOM5 Details:\ ThalamusNewbornDonor10223_CNhs14084_ctss_fwd ThalamusNbD10223+ bigWig thalamus, newborn, donor10223_CNhs14084_10366-105F6_forward 0 3613 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20newborn%2c%20donor10223.CNhs14084.10366-105F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thalamus, newborn, donor10223_CNhs14084_10366-105F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10366-105F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusNewbornDonor10223_CNhs14084_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6\ urlLabel FANTOM5 Details:\ ThalamusNewbornDonor10223_CNhs14084_tpm_rev ThalamusNbD10223- bigWig thalamus, newborn, donor10223_CNhs14084_10366-105F6_reverse 1 3614 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20newborn%2c%20donor10223.CNhs14084.10366-105F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thalamus, newborn, donor10223_CNhs14084_10366-105F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10366-105F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusNewbornDonor10223_CNhs14084_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6\ urlLabel FANTOM5 Details:\ ThalamusNewbornDonor10223_CNhs14084_ctss_rev ThalamusNbD10223- bigWig thalamus, newborn, donor10223_CNhs14084_10366-105F6_reverse 0 3614 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20newborn%2c%20donor10223.CNhs14084.10366-105F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thalamus, newborn, donor10223_CNhs14084_10366-105F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10366-105F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusNewbornDonor10223_CNhs14084_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6\ urlLabel FANTOM5 Details:\ ThroatAdult_CNhs12858_tpm_fwd ThroatAdult+ bigWig throat, adult_CNhs12858_10209-103G2_forward 1 3615 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/throat%2c%20adult.CNhs12858.10209-103G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel throat, adult_CNhs12858_10209-103G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10209-103G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThroatAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThroatAdult_CNhs12858_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2\ urlLabel FANTOM5 Details:\ ThroatAdult_CNhs12858_ctss_fwd ThroatAdult+ bigWig throat, adult_CNhs12858_10209-103G2_forward 0 3615 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/throat%2c%20adult.CNhs12858.10209-103G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel throat, adult_CNhs12858_10209-103G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10209-103G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThroatAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThroatAdult_CNhs12858_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2\ urlLabel FANTOM5 Details:\ ThroatAdult_CNhs12858_tpm_rev ThroatAdult- bigWig throat, adult_CNhs12858_10209-103G2_reverse 1 3616 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/throat%2c%20adult.CNhs12858.10209-103G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel throat, adult_CNhs12858_10209-103G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10209-103G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThroatAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThroatAdult_CNhs12858_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2\ urlLabel FANTOM5 Details:\ ThroatAdult_CNhs12858_ctss_rev ThroatAdult- bigWig throat, adult_CNhs12858_10209-103G2_reverse 0 3616 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/throat%2c%20adult.CNhs12858.10209-103G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel throat, adult_CNhs12858_10209-103G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10209-103G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThroatAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThroatAdult_CNhs12858_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2\ urlLabel FANTOM5 Details:\ ThroatFetalDonor1_CNhs11770_tpm_fwd ThroatFetalD1+ bigWig throat, fetal, donor1_CNhs11770_10061-101H7_forward 1 3617 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/throat%2c%20fetal%2c%20donor1.CNhs11770.10061-101H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel throat, fetal, donor1_CNhs11770_10061-101H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10061-101H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThroatFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThroatFetalDonor1_CNhs11770_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7\ urlLabel FANTOM5 Details:\ ThroatFetalDonor1_CNhs11770_ctss_fwd ThroatFetalD1+ bigWig throat, fetal, donor1_CNhs11770_10061-101H7_forward 0 3617 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/throat%2c%20fetal%2c%20donor1.CNhs11770.10061-101H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel throat, fetal, donor1_CNhs11770_10061-101H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10061-101H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThroatFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThroatFetalDonor1_CNhs11770_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7\ urlLabel FANTOM5 Details:\ ThroatFetalDonor1_CNhs11770_tpm_rev ThroatFetalD1- bigWig throat, fetal, donor1_CNhs11770_10061-101H7_reverse 1 3618 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/throat%2c%20fetal%2c%20donor1.CNhs11770.10061-101H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel throat, fetal, donor1_CNhs11770_10061-101H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10061-101H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThroatFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThroatFetalDonor1_CNhs11770_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7\ urlLabel FANTOM5 Details:\ ThroatFetalDonor1_CNhs11770_ctss_rev ThroatFetalD1- bigWig throat, fetal, donor1_CNhs11770_10061-101H7_reverse 0 3618 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/throat%2c%20fetal%2c%20donor1.CNhs11770.10061-101H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel throat, fetal, donor1_CNhs11770_10061-101H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10061-101H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThroatFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThroatFetalDonor1_CNhs11770_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7\ urlLabel FANTOM5 Details:\ ThymusAdultPool1_CNhs10633_tpm_fwd ThymusAdultPl1+ bigWig thymus, adult, pool1_CNhs10633_10027-101D9_forward 1 3619 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thymus%2c%20adult%2c%20pool1.CNhs10633.10027-101D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thymus, adult, pool1_CNhs10633_10027-101D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10027-101D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThymusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThymusAdultPool1_CNhs10633_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9\ urlLabel FANTOM5 Details:\ ThymusAdultPool1_CNhs10633_ctss_fwd ThymusAdultPl1+ bigWig thymus, adult, pool1_CNhs10633_10027-101D9_forward 0 3619 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thymus%2c%20adult%2c%20pool1.CNhs10633.10027-101D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thymus, adult, pool1_CNhs10633_10027-101D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10027-101D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThymusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThymusAdultPool1_CNhs10633_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9\ urlLabel FANTOM5 Details:\ ThymusAdultPool1_CNhs10633_tpm_rev ThymusAdultPl1- bigWig thymus, adult, pool1_CNhs10633_10027-101D9_reverse 1 3620 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thymus%2c%20adult%2c%20pool1.CNhs10633.10027-101D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thymus, adult, pool1_CNhs10633_10027-101D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10027-101D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThymusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThymusAdultPool1_CNhs10633_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9\ urlLabel FANTOM5 Details:\ ThymusAdultPool1_CNhs10633_ctss_rev ThymusAdultPl1- bigWig thymus, adult, pool1_CNhs10633_10027-101D9_reverse 0 3620 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thymus%2c%20adult%2c%20pool1.CNhs10633.10027-101D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thymus, adult, pool1_CNhs10633_10027-101D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10027-101D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThymusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThymusAdultPool1_CNhs10633_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9\ urlLabel FANTOM5 Details:\ ThymusFetalPool1_CNhs10650_tpm_fwd ThymusFetalPl1+ bigWig thymus, fetal, pool1_CNhs10650_10043-101F7_forward 1 3621 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thymus%2c%20fetal%2c%20pool1.CNhs10650.10043-101F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thymus, fetal, pool1_CNhs10650_10043-101F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10043-101F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThymusFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThymusFetalPool1_CNhs10650_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7\ urlLabel FANTOM5 Details:\ ThymusFetalPool1_CNhs10650_ctss_fwd ThymusFetalPl1+ bigWig thymus, fetal, pool1_CNhs10650_10043-101F7_forward 0 3621 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thymus%2c%20fetal%2c%20pool1.CNhs10650.10043-101F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thymus, fetal, pool1_CNhs10650_10043-101F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10043-101F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThymusFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThymusFetalPool1_CNhs10650_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7\ urlLabel FANTOM5 Details:\ ThymusFetalPool1_CNhs10650_tpm_rev ThymusFetalPl1- bigWig thymus, fetal, pool1_CNhs10650_10043-101F7_reverse 1 3622 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thymus%2c%20fetal%2c%20pool1.CNhs10650.10043-101F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thymus, fetal, pool1_CNhs10650_10043-101F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10043-101F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThymusFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThymusFetalPool1_CNhs10650_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7\ urlLabel FANTOM5 Details:\ ThymusFetalPool1_CNhs10650_ctss_rev ThymusFetalPl1- bigWig thymus, fetal, pool1_CNhs10650_10043-101F7_reverse 0 3622 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thymus%2c%20fetal%2c%20pool1.CNhs10650.10043-101F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thymus, fetal, pool1_CNhs10650_10043-101F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10043-101F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThymusFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThymusFetalPool1_CNhs10650_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7\ urlLabel FANTOM5 Details:\ ThyroidAdultPool1_CNhs10634_tpm_fwd ThyroidAdultPl1+ bigWig thyroid, adult, pool1_CNhs10634_10028-101E1_forward 1 3623 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%2c%20adult%2c%20pool1.CNhs10634.10028-101E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thyroid, adult, pool1_CNhs10634_10028-101E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10028-101E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThyroidAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThyroidAdultPool1_CNhs10634_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1\ urlLabel FANTOM5 Details:\ ThyroidAdultPool1_CNhs10634_ctss_fwd ThyroidAdultPl1+ bigWig thyroid, adult, pool1_CNhs10634_10028-101E1_forward 0 3623 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%2c%20adult%2c%20pool1.CNhs10634.10028-101E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thyroid, adult, pool1_CNhs10634_10028-101E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10028-101E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThyroidAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThyroidAdultPool1_CNhs10634_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1\ urlLabel FANTOM5 Details:\ ThyroidAdultPool1_CNhs10634_tpm_rev ThyroidAdultPl1- bigWig thyroid, adult, pool1_CNhs10634_10028-101E1_reverse 1 3624 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%2c%20adult%2c%20pool1.CNhs10634.10028-101E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thyroid, adult, pool1_CNhs10634_10028-101E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10028-101E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThyroidAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThyroidAdultPool1_CNhs10634_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1\ urlLabel FANTOM5 Details:\ ThyroidAdultPool1_CNhs10634_ctss_rev ThyroidAdultPl1- bigWig thyroid, adult, pool1_CNhs10634_10028-101E1_reverse 0 3624 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%2c%20adult%2c%20pool1.CNhs10634.10028-101E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thyroid, adult, pool1_CNhs10634_10028-101E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10028-101E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThyroidAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThyroidAdultPool1_CNhs10634_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1\ urlLabel FANTOM5 Details:\ ThyroidFetalDonor1_CNhs11769_tpm_fwd ThyroidFetalD1+ bigWig thyroid, fetal, donor1_CNhs11769_10060-101H6_forward 1 3625 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%2c%20fetal%2c%20donor1.CNhs11769.10060-101H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thyroid, fetal, donor1_CNhs11769_10060-101H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10060-101H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThyroidFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThyroidFetalDonor1_CNhs11769_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6\ urlLabel FANTOM5 Details:\ ThyroidFetalDonor1_CNhs11769_ctss_fwd ThyroidFetalD1+ bigWig thyroid, fetal, donor1_CNhs11769_10060-101H6_forward 0 3625 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%2c%20fetal%2c%20donor1.CNhs11769.10060-101H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thyroid, fetal, donor1_CNhs11769_10060-101H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10060-101H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThyroidFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThyroidFetalDonor1_CNhs11769_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6\ urlLabel FANTOM5 Details:\ ThyroidFetalDonor1_CNhs11769_tpm_rev ThyroidFetalD1- bigWig thyroid, fetal, donor1_CNhs11769_10060-101H6_reverse 1 3626 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%2c%20fetal%2c%20donor1.CNhs11769.10060-101H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thyroid, fetal, donor1_CNhs11769_10060-101H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10060-101H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThyroidFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThyroidFetalDonor1_CNhs11769_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6\ urlLabel FANTOM5 Details:\ ThyroidFetalDonor1_CNhs11769_ctss_rev ThyroidFetalD1- bigWig thyroid, fetal, donor1_CNhs11769_10060-101H6_reverse 0 3626 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%2c%20fetal%2c%20donor1.CNhs11769.10060-101H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thyroid, fetal, donor1_CNhs11769_10060-101H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10060-101H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThyroidFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThyroidFetalDonor1_CNhs11769_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6\ urlLabel FANTOM5 Details:\ TongueAdult_CNhs12853_tpm_fwd TongueAdult+ bigWig tongue, adult_CNhs12853_10203-103F5_forward 1 3627 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%2c%20adult.CNhs12853.10203-103F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel tongue, adult_CNhs12853_10203-103F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10203-103F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TongueAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TongueAdult_CNhs12853_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5\ urlLabel FANTOM5 Details:\ TongueAdult_CNhs12853_ctss_fwd TongueAdult+ bigWig tongue, adult_CNhs12853_10203-103F5_forward 0 3627 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%2c%20adult.CNhs12853.10203-103F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel tongue, adult_CNhs12853_10203-103F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10203-103F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TongueAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TongueAdult_CNhs12853_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5\ urlLabel FANTOM5 Details:\ TongueAdult_CNhs12853_tpm_rev TongueAdult- bigWig tongue, adult_CNhs12853_10203-103F5_reverse 1 3628 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%2c%20adult.CNhs12853.10203-103F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel tongue, adult_CNhs12853_10203-103F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10203-103F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TongueAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TongueAdult_CNhs12853_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5\ urlLabel FANTOM5 Details:\ TongueAdult_CNhs12853_ctss_rev TongueAdult- bigWig tongue, adult_CNhs12853_10203-103F5_reverse 0 3628 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%2c%20adult.CNhs12853.10203-103F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel tongue, adult_CNhs12853_10203-103F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10203-103F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TongueAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TongueAdult_CNhs12853_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5\ urlLabel FANTOM5 Details:\ TongueEpidermisFungiformPapillaeDonor1_CNhs13460_tpm_fwd TongueEpidermisD1+ bigWig tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_forward 1 3629 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%20epidermis%20%28fungiform%20papillae%29%2c%20donor1.CNhs13460.10288-104F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10288-104F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TongueEpidermisD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TongueEpidermisFungiformPapillaeDonor1_CNhs13460_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9\ urlLabel FANTOM5 Details:\ TongueEpidermisFungiformPapillaeDonor1_CNhs13460_ctss_fwd TongueEpidermisD1+ bigWig tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_forward 0 3629 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%20epidermis%20%28fungiform%20papillae%29%2c%20donor1.CNhs13460.10288-104F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10288-104F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TongueEpidermisD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TongueEpidermisFungiformPapillaeDonor1_CNhs13460_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9\ urlLabel FANTOM5 Details:\ TongueEpidermisFungiformPapillaeDonor1_CNhs13460_tpm_rev TongueEpidermisD1- bigWig tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_reverse 1 3630 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%20epidermis%20%28fungiform%20papillae%29%2c%20donor1.CNhs13460.10288-104F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10288-104F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TongueEpidermisD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TongueEpidermisFungiformPapillaeDonor1_CNhs13460_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9\ urlLabel FANTOM5 Details:\ TongueEpidermisFungiformPapillaeDonor1_CNhs13460_ctss_rev TongueEpidermisD1- bigWig tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_reverse 0 3630 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%20epidermis%20%28fungiform%20papillae%29%2c%20donor1.CNhs13460.10288-104F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10288-104F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TongueEpidermisD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TongueEpidermisFungiformPapillaeDonor1_CNhs13460_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9\ urlLabel FANTOM5 Details:\ TongueFetalDonor1_CNhs11768_tpm_fwd TongueFetalD1+ bigWig tongue, fetal, donor1_CNhs11768_10059-101H5_forward 1 3631 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%2c%20fetal%2c%20donor1.CNhs11768.10059-101H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel tongue, fetal, donor1_CNhs11768_10059-101H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10059-101H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TongueFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TongueFetalDonor1_CNhs11768_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5\ urlLabel FANTOM5 Details:\ TongueFetalDonor1_CNhs11768_ctss_fwd TongueFetalD1+ bigWig tongue, fetal, donor1_CNhs11768_10059-101H5_forward 0 3631 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%2c%20fetal%2c%20donor1.CNhs11768.10059-101H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel tongue, fetal, donor1_CNhs11768_10059-101H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10059-101H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TongueFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TongueFetalDonor1_CNhs11768_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5\ urlLabel FANTOM5 Details:\ TongueFetalDonor1_CNhs11768_tpm_rev TongueFetalD1- bigWig tongue, fetal, donor1_CNhs11768_10059-101H5_reverse 1 3632 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%2c%20fetal%2c%20donor1.CNhs11768.10059-101H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel tongue, fetal, donor1_CNhs11768_10059-101H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10059-101H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TongueFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TongueFetalDonor1_CNhs11768_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5\ urlLabel FANTOM5 Details:\ TongueFetalDonor1_CNhs11768_ctss_rev TongueFetalD1- bigWig tongue, fetal, donor1_CNhs11768_10059-101H5_reverse 0 3632 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%2c%20fetal%2c%20donor1.CNhs11768.10059-101H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel tongue, fetal, donor1_CNhs11768_10059-101H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10059-101H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TongueFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TongueFetalDonor1_CNhs11768_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5\ urlLabel FANTOM5 Details:\ TonsilAdultPool1_CNhs10654_tpm_fwd TonsilAdultPl1+ bigWig tonsil, adult, pool1_CNhs10654_10047-101G2_forward 1 3633 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tonsil%2c%20adult%2c%20pool1.CNhs10654.10047-101G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel tonsil, adult, pool1_CNhs10654_10047-101G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10047-101G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TonsilAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TonsilAdultPool1_CNhs10654_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2\ urlLabel FANTOM5 Details:\ TonsilAdultPool1_CNhs10654_ctss_fwd TonsilAdultPl1+ bigWig tonsil, adult, pool1_CNhs10654_10047-101G2_forward 0 3633 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tonsil%2c%20adult%2c%20pool1.CNhs10654.10047-101G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel tonsil, adult, pool1_CNhs10654_10047-101G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10047-101G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TonsilAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TonsilAdultPool1_CNhs10654_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2\ urlLabel FANTOM5 Details:\ TonsilAdultPool1_CNhs10654_tpm_rev TonsilAdultPl1- bigWig tonsil, adult, pool1_CNhs10654_10047-101G2_reverse 1 3634 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tonsil%2c%20adult%2c%20pool1.CNhs10654.10047-101G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel tonsil, adult, pool1_CNhs10654_10047-101G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10047-101G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TonsilAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TonsilAdultPool1_CNhs10654_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2\ urlLabel FANTOM5 Details:\ TonsilAdultPool1_CNhs10654_ctss_rev TonsilAdultPl1- bigWig tonsil, adult, pool1_CNhs10654_10047-101G2_reverse 0 3634 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tonsil%2c%20adult%2c%20pool1.CNhs10654.10047-101G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel tonsil, adult, pool1_CNhs10654_10047-101G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10047-101G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TonsilAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TonsilAdultPool1_CNhs10654_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2\ urlLabel FANTOM5 Details:\ TracheaAdultPool1_CNhs10635_tpm_fwd TracheaAdultPl1+ bigWig trachea, adult, pool1_CNhs10635_10029-101E2_forward 1 3635 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/trachea%2c%20adult%2c%20pool1.CNhs10635.10029-101E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel trachea, adult, pool1_CNhs10635_10029-101E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10029-101E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TracheaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TracheaAdultPool1_CNhs10635_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2\ urlLabel FANTOM5 Details:\ TracheaAdultPool1_CNhs10635_ctss_fwd TracheaAdultPl1+ bigWig trachea, adult, pool1_CNhs10635_10029-101E2_forward 0 3635 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/trachea%2c%20adult%2c%20pool1.CNhs10635.10029-101E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel trachea, adult, pool1_CNhs10635_10029-101E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10029-101E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TracheaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TracheaAdultPool1_CNhs10635_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2\ urlLabel FANTOM5 Details:\ TracheaAdultPool1_CNhs10635_tpm_rev TracheaAdultPl1- bigWig trachea, adult, pool1_CNhs10635_10029-101E2_reverse 1 3636 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/trachea%2c%20adult%2c%20pool1.CNhs10635.10029-101E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel trachea, adult, pool1_CNhs10635_10029-101E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10029-101E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TracheaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TracheaAdultPool1_CNhs10635_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2\ urlLabel FANTOM5 Details:\ TracheaAdultPool1_CNhs10635_ctss_rev TracheaAdultPl1- bigWig trachea, adult, pool1_CNhs10635_10029-101E2_reverse 0 3636 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/trachea%2c%20adult%2c%20pool1.CNhs10635.10029-101E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel trachea, adult, pool1_CNhs10635_10029-101E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10029-101E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TracheaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TracheaAdultPool1_CNhs10635_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2\ urlLabel FANTOM5 Details:\ TracheaFetalDonor1_CNhs11766_tpm_fwd TracheaFetalD1+ bigWig trachea, fetal, donor1_CNhs11766_10058-101H4_forward 1 3637 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/trachea%2c%20fetal%2c%20donor1.CNhs11766.10058-101H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel trachea, fetal, donor1_CNhs11766_10058-101H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10058-101H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TracheaFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TracheaFetalDonor1_CNhs11766_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4\ urlLabel FANTOM5 Details:\ TracheaFetalDonor1_CNhs11766_ctss_fwd TracheaFetalD1+ bigWig trachea, fetal, donor1_CNhs11766_10058-101H4_forward 0 3637 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/trachea%2c%20fetal%2c%20donor1.CNhs11766.10058-101H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel trachea, fetal, donor1_CNhs11766_10058-101H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10058-101H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TracheaFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TracheaFetalDonor1_CNhs11766_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4\ urlLabel FANTOM5 Details:\ TracheaFetalDonor1_CNhs11766_tpm_rev TracheaFetalD1- bigWig trachea, fetal, donor1_CNhs11766_10058-101H4_reverse 1 3638 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/trachea%2c%20fetal%2c%20donor1.CNhs11766.10058-101H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel trachea, fetal, donor1_CNhs11766_10058-101H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10058-101H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TracheaFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TracheaFetalDonor1_CNhs11766_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4\ urlLabel FANTOM5 Details:\ TracheaFetalDonor1_CNhs11766_ctss_rev TracheaFetalD1- bigWig trachea, fetal, donor1_CNhs11766_10058-101H4_reverse 0 3638 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/trachea%2c%20fetal%2c%20donor1.CNhs11766.10058-101H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel trachea, fetal, donor1_CNhs11766_10058-101H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10058-101H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TracheaFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TracheaFetalDonor1_CNhs11766_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4\ urlLabel FANTOM5 Details:\ UmbilicalCordFetalDonor1_CNhs11765_tpm_fwd UmbilicalCordFetalD1+ bigWig umbilical cord, fetal, donor1_CNhs11765_10057-101H3_forward 1 3639 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/umbilical%20cord%2c%20fetal%2c%20donor1.CNhs11765.10057-101H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel umbilical cord, fetal, donor1_CNhs11765_10057-101H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10057-101H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UmbilicalCordFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UmbilicalCordFetalDonor1_CNhs11765_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3\ urlLabel FANTOM5 Details:\ UmbilicalCordFetalDonor1_CNhs11765_ctss_fwd UmbilicalCordFetalD1+ bigWig umbilical cord, fetal, donor1_CNhs11765_10057-101H3_forward 0 3639 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/umbilical%20cord%2c%20fetal%2c%20donor1.CNhs11765.10057-101H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel umbilical cord, fetal, donor1_CNhs11765_10057-101H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10057-101H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UmbilicalCordFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UmbilicalCordFetalDonor1_CNhs11765_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3\ urlLabel FANTOM5 Details:\ UmbilicalCordFetalDonor1_CNhs11765_tpm_rev UmbilicalCordFetalD1- bigWig umbilical cord, fetal, donor1_CNhs11765_10057-101H3_reverse 1 3640 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/umbilical%20cord%2c%20fetal%2c%20donor1.CNhs11765.10057-101H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel umbilical cord, fetal, donor1_CNhs11765_10057-101H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10057-101H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UmbilicalCordFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UmbilicalCordFetalDonor1_CNhs11765_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3\ urlLabel FANTOM5 Details:\ UmbilicalCordFetalDonor1_CNhs11765_ctss_rev UmbilicalCordFetalD1- bigWig umbilical cord, fetal, donor1_CNhs11765_10057-101H3_reverse 0 3640 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/umbilical%20cord%2c%20fetal%2c%20donor1.CNhs11765.10057-101H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel umbilical cord, fetal, donor1_CNhs11765_10057-101H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10057-101H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UmbilicalCordFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UmbilicalCordFetalDonor1_CNhs11765_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3\ urlLabel FANTOM5 Details:\ UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_tpm_fwd UniversalRnaNormalTissuesBiochainPl1+ bigWig Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_forward 1 3641 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Universal%20RNA%20-%20Human%20Normal%20Tissues%20Biochain%2c%20pool1.CNhs10612.10007-101B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10007-101B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UniversalRnaNormalTissuesBiochainPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4\ urlLabel FANTOM5 Details:\ UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_ctss_fwd UniversalRnaNormalTissuesBiochainPl1+ bigWig Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_forward 0 3641 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Universal%20RNA%20-%20Human%20Normal%20Tissues%20Biochain%2c%20pool1.CNhs10612.10007-101B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10007-101B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UniversalRnaNormalTissuesBiochainPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4\ urlLabel FANTOM5 Details:\ UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_tpm_rev UniversalRnaNormalTissuesBiochainPl1- bigWig Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_reverse 1 3642 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Universal%20RNA%20-%20Human%20Normal%20Tissues%20Biochain%2c%20pool1.CNhs10612.10007-101B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10007-101B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UniversalRnaNormalTissuesBiochainPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4\ urlLabel FANTOM5 Details:\ UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_ctss_rev UniversalRnaNormalTissuesBiochainPl1- bigWig Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_reverse 0 3642 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Universal%20RNA%20-%20Human%20Normal%20Tissues%20Biochain%2c%20pool1.CNhs10612.10007-101B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10007-101B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UniversalRnaNormalTissuesBiochainPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4\ urlLabel FANTOM5 Details:\ UrethraDonor2_CNhs13464_tpm_fwd UrethraD2+ bigWig Urethra, donor2_CNhs13464_10319-105A4_forward 1 3643 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urethra%2c%20donor2.CNhs13464.10319-105A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Urethra, donor2_CNhs13464_10319-105A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10319-105A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UrethraD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UrethraDonor2_CNhs13464_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4\ urlLabel FANTOM5 Details:\ UrethraDonor2_CNhs13464_ctss_fwd UrethraD2+ bigWig Urethra, donor2_CNhs13464_10319-105A4_forward 0 3643 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urethra%2c%20donor2.CNhs13464.10319-105A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Urethra, donor2_CNhs13464_10319-105A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10319-105A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UrethraD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UrethraDonor2_CNhs13464_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4\ urlLabel FANTOM5 Details:\ UrethraDonor2_CNhs13464_tpm_rev UrethraD2- bigWig Urethra, donor2_CNhs13464_10319-105A4_reverse 1 3644 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urethra%2c%20donor2.CNhs13464.10319-105A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Urethra, donor2_CNhs13464_10319-105A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10319-105A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UrethraD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UrethraDonor2_CNhs13464_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4\ urlLabel FANTOM5 Details:\ UrethraDonor2_CNhs13464_ctss_rev UrethraD2- bigWig Urethra, donor2_CNhs13464_10319-105A4_reverse 0 3644 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urethra%2c%20donor2.CNhs13464.10319-105A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Urethra, donor2_CNhs13464_10319-105A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10319-105A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UrethraD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UrethraDonor2_CNhs13464_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4\ urlLabel FANTOM5 Details:\ UterusAdultPool1_CNhs11676_tpm_fwd UterusAdultPl1+ bigWig uterus, adult, pool1_CNhs11676_10100-102D1_forward 1 3645 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/uterus%2c%20adult%2c%20pool1.CNhs11676.10100-102D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel uterus, adult, pool1_CNhs11676_10100-102D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10100-102D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UterusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UterusAdultPool1_CNhs11676_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1\ urlLabel FANTOM5 Details:\ UterusAdultPool1_CNhs11676_ctss_fwd UterusAdultPl1+ bigWig uterus, adult, pool1_CNhs11676_10100-102D1_forward 0 3645 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/uterus%2c%20adult%2c%20pool1.CNhs11676.10100-102D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel uterus, adult, pool1_CNhs11676_10100-102D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10100-102D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UterusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UterusAdultPool1_CNhs11676_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1\ urlLabel FANTOM5 Details:\ UterusAdultPool1_CNhs11676_tpm_rev UterusAdultPl1- bigWig uterus, adult, pool1_CNhs11676_10100-102D1_reverse 1 3646 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/uterus%2c%20adult%2c%20pool1.CNhs11676.10100-102D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel uterus, adult, pool1_CNhs11676_10100-102D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10100-102D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UterusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UterusAdultPool1_CNhs11676_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1\ urlLabel FANTOM5 Details:\ UterusAdultPool1_CNhs11676_ctss_rev UterusAdultPl1- bigWig uterus, adult, pool1_CNhs11676_10100-102D1_reverse 0 3646 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/uterus%2c%20adult%2c%20pool1.CNhs11676.10100-102D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel uterus, adult, pool1_CNhs11676_10100-102D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10100-102D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UterusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UterusAdultPool1_CNhs11676_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1\ urlLabel FANTOM5 Details:\ UterusFetalDonor1_CNhs11763_tpm_fwd UterusFetalD1+ bigWig uterus, fetal, donor1_CNhs11763_10055-101H1_forward 1 3647 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/uterus%2c%20fetal%2c%20donor1.CNhs11763.10055-101H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel uterus, fetal, donor1_CNhs11763_10055-101H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10055-101H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UterusFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UterusFetalDonor1_CNhs11763_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1\ urlLabel FANTOM5 Details:\ UterusFetalDonor1_CNhs11763_ctss_fwd UterusFetalD1+ bigWig uterus, fetal, donor1_CNhs11763_10055-101H1_forward 0 3647 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/uterus%2c%20fetal%2c%20donor1.CNhs11763.10055-101H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel uterus, fetal, donor1_CNhs11763_10055-101H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10055-101H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UterusFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UterusFetalDonor1_CNhs11763_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1\ urlLabel FANTOM5 Details:\ UterusFetalDonor1_CNhs11763_tpm_rev UterusFetalD1- bigWig uterus, fetal, donor1_CNhs11763_10055-101H1_reverse 1 3648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/uterus%2c%20fetal%2c%20donor1.CNhs11763.10055-101H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel uterus, fetal, donor1_CNhs11763_10055-101H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10055-101H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UterusFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UterusFetalDonor1_CNhs11763_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1\ urlLabel FANTOM5 Details:\ UterusFetalDonor1_CNhs11763_ctss_rev UterusFetalD1- bigWig uterus, fetal, donor1_CNhs11763_10055-101H1_reverse 0 3648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/uterus%2c%20fetal%2c%20donor1.CNhs11763.10055-101H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel uterus, fetal, donor1_CNhs11763_10055-101H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10055-101H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UterusFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UterusFetalDonor1_CNhs11763_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1\ urlLabel FANTOM5 Details:\ VaginaAdult_CNhs12854_tpm_fwd VaginaAdult+ bigWig vagina, adult_CNhs12854_10204-103F6_forward 1 3649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/vagina%2c%20adult.CNhs12854.10204-103F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel vagina, adult_CNhs12854_10204-103F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10204-103F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel VaginaAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track VaginaAdult_CNhs12854_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6\ urlLabel FANTOM5 Details:\ VaginaAdult_CNhs12854_ctss_fwd VaginaAdult+ bigWig vagina, adult_CNhs12854_10204-103F6_forward 0 3649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/vagina%2c%20adult.CNhs12854.10204-103F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel vagina, adult_CNhs12854_10204-103F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10204-103F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel VaginaAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track VaginaAdult_CNhs12854_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6\ urlLabel FANTOM5 Details:\ VaginaAdult_CNhs12854_tpm_rev VaginaAdult- bigWig vagina, adult_CNhs12854_10204-103F6_reverse 1 3650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/vagina%2c%20adult.CNhs12854.10204-103F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel vagina, adult_CNhs12854_10204-103F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10204-103F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel VaginaAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track VaginaAdult_CNhs12854_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6\ urlLabel FANTOM5 Details:\ VaginaAdult_CNhs12854_ctss_rev VaginaAdult- bigWig vagina, adult_CNhs12854_10204-103F6_reverse 0 3650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/vagina%2c%20adult.CNhs12854.10204-103F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel vagina, adult_CNhs12854_10204-103F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10204-103F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel VaginaAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track VaginaAdult_CNhs12854_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6\ urlLabel FANTOM5 Details:\ VeinAdult_CNhs12844_tpm_fwd VeinAdult+ bigWig vein, adult_CNhs12844_10191-103E2_forward 1 3651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/vein%2c%20adult.CNhs12844.10191-103E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel vein, adult_CNhs12844_10191-103E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10191-103E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel VeinAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track VeinAdult_CNhs12844_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2\ urlLabel FANTOM5 Details:\ VeinAdult_CNhs12844_ctss_fwd VeinAdult+ bigWig vein, adult_CNhs12844_10191-103E2_forward 0 3651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/vein%2c%20adult.CNhs12844.10191-103E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel vein, adult_CNhs12844_10191-103E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10191-103E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel VeinAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track VeinAdult_CNhs12844_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2\ urlLabel FANTOM5 Details:\ VeinAdult_CNhs12844_tpm_rev VeinAdult- bigWig vein, adult_CNhs12844_10191-103E2_reverse 1 3652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/vein%2c%20adult.CNhs12844.10191-103E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel vein, adult_CNhs12844_10191-103E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10191-103E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel VeinAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track VeinAdult_CNhs12844_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2\ urlLabel FANTOM5 Details:\ VeinAdult_CNhs12844_ctss_rev VeinAdult- bigWig vein, adult_CNhs12844_10191-103E2_reverse 0 3652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/vein%2c%20adult.CNhs12844.10191-103E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel vein, adult_CNhs12844_10191-103E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10191-103E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel VeinAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track VeinAdult_CNhs12844_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2\ urlLabel FANTOM5 Details:\ ncbiRefSeqHistorical RefSeq Historical genePred NCBI RefSeq Historical Transcript Versions 1 10000 12 12 120 133 133 187 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 12,12,120\ idXref ncbiRefSeqLinkHistorical mrnaAcc name\ longLabel NCBI RefSeq Historical Transcript Versions\ parent refSeqComposite off\ priority 10000\ shortLabel RefSeq Historical\ track ncbiRefSeqHistorical\ type genePred\