This directory contains reciprocal-best netted chains for hg38-macNem1.

 - hg38.macNem1.rbest.net.gz: hg38-referenced recip.best net to macNem1.
 - hg38.macNem1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from hg38 to macNem1 through the recip.best net.

 - macNem1.hg38.rbest.net.gz: macNem1-referenced recip.best net.
 - macNem1.hg38.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/hg38.macNem1.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
      Parent Directory                                 -   
      axtRBestNet/                2017-02-27 18:07    -   
      md5sum.txt                  2017-02-27 14:49  244   
      hg38.macNem1.rbest.net.gz   2017-02-27 14:49   65M  
      hg38.macNem1.rbest.chain.gz 2017-02-27 14:48   35M  
      macNem1.hg38.rbest.chain.gz 2017-02-27 14:48   35M  
      macNem1.hg38.rbest.net.gz   2017-02-27 14:47   57M