hub GCA_000227395.2 genome assembly shortLabel Trypanosoma congolense (IL3000 2011) longLabel Trypanosoma congolense (IL3000 2011)/Trypanosoma congolense IL3000/GCA_000227395.2_ASM22739v2 genome assembly useOneFile on email hclawson@ucsc.edu descriptionUrl html/GCA_000227395.2_ASM22739v2.description.html genome GCA_000227395.2 taxId 1068625 groups groups.txt description Trypanosoma congolense (IL3000 2011) twoBitPath GCA_000227395.2.2bit twoBitBptUrl GCA_000227395.2.2bit.bpt chromSizes GCA_000227395.2.chrom.sizes.txt chromAliasBb GCA_000227395.2.chromAlias.bb organism ASM22739v2 Aug. 2011 defaultPos CAEQ01001170.1:22573-32573 scientificName Trypanosoma congolense IL3000 htmlPath html/GCA_000227395.2_ASM22739v2.description.html blat dynablat-01.soe.ucsc.edu 4040 dynamic GCA/000/227/395/GCA_000227395.2 transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCA/000/227/395/GCA_000227395.2 isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCA/000/227/395/GCA_000227395.2 track assembly longLabel Assembly shortLabel Assembly visibility pack colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCA_000227395.2_ASM22739v2.assembly.bb type bigBed 6 html html/GCA_000227395.2_ASM22739v2.assembly searchIndex name searchTrix ixIxx/GCA_000227395.2_ASM22739v2.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: group map track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCA_000227395.2_ASM22739v2.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility full autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCA_000227395.2_ASM22739v2.gc5Base.bw html html/GCA_000227395.2_ASM22739v2.gc5Base track tanDups shortLabel Tandem Dups longLabel Paired identical sequences compositeTrack on visibility hide type bigBed 12 group map html html/GCA_000227395.2_ASM22739v2.tanDups track tandemDups parent tanDups on shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly bigDataUrl bbi/GCA_000227395.2_ASM22739v2.tandemDups.bb type bigBed 12 track repeatMasker shortLabel RepeatMasker longLabel RepeatMasker Repetitive Elements type bigRmsk 9 + visibility pack group varRep bigDataUrl bbi/GCA_000227395.2_ASM22739v2.rmsk.bb maxWindowToDraw 5000000 html html/GCA_000227395.2_ASM22739v2.repeatMasker track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCA_000227395.2_ASM22739v2.simpleRepeat.bb html html/GCA_000227395.2_ASM22739v2.simpleRepeat track ncbiGene longLabel Gene models submitted to NCBI shortLabel Gene models visibility pack color 0,80,150 altColor 150,80,0 colorByStrand 0,80,150 150,80,0 bigDataUrl bbi/GCA_000227395.2_ASM22739v2.ncbiGene.bb type bigGenePred html html/GCA_000227395.2_ASM22739v2.ncbiGene searchIndex name searchTrix ixIxx/GCA_000227395.2_ASM22739v2.ncbiGene.ix url https://www.ncbi.nlm.nih.gov/gene/?term=$$ urlLabel Entrez gene: labelFields geneName,geneName2 defaultLabelFields geneName2 group genes track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility pack type bigBed 4 + html html/GCA_000227395.2_ASM22739v2.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCA_000227395.2_ASM22739v2.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCA_000227395.2_ASM22739v2.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCA_000227395.2_ASM22739v2.windowMasker.bb html html/GCA_000227395.2_ASM22739v2.windowMasker track allGaps shortLabel All Gaps longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps group map visibility dense type bigBed 3 bigDataUrl bbi/GCA_000227395.2_ASM22739v2.allGaps.bb html html/GCA_000227395.2_ASM22739v2.allGaps track augustus shortLabel Augustus longLabel Augustus Gene Predictions group genes visibility dense color 180,0,0 type bigGenePred bigDataUrl bbi/GCA_000227395.2_ASM22739v2.augustus.bb html html/GCA_000227395.2_ASM22739v2.augustus track xenoRefGene shortLabel RefSeq mRNAs longLabel RefSeq mRNAs mapped to this assembly group rna visibility pack color 180,0,0 type bigGenePred bigDataUrl bbi/GCA_000227395.2_ASM22739v2.xenoRefGene.bb url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: labelFields name,geneName,geneName2 defaultLabelFields geneName searchIndex name searchTrix ixIxx/GCA_000227395.2_ASM22739v2.xenoRefGene.ix html html/GCA_000227395.2_ASM22739v2.xenoRefGene