track assembly longLabel Assembly shortLabel Assembly visibility pack colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.assembly.bb type bigBed 6 html html/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.assembly searchIndex name searchTrix ixIxx/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database group map track gap longLabel AGP gap shortLabel Gap (AGP defined) visibility dense color 0,0,0 bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.gap.bb type bigBed 4 group map html html/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.gap track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility full autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.gc5Base.bw html html/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.gc5Base track tanDups shortLabel Tandem Dups longLabel Paired identical sequences compositeTrack on visibility hide type bigBed 12 group map html html/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.tanDups track gapOverlap parent tanDups on shortLabel Gap Overlaps longLabel Paired exactly identical sequence on each side of a gap bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.gapOverlap.bb type bigBed 12 track tandemDups parent tanDups on shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.tandemDups.bb type bigBed 12 track repeatMasker shortLabel RepeatMasker longLabel RepeatMasker Repetitive Elements type bigRmsk 9 + visibility pack group varRep bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.rmsk.bb maxWindowToDraw 5000000 html html/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.repeatMasker track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.simpleRepeat.bb html html/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.simpleRepeat track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility pack type bigBed 4 + html html/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.windowMasker.bb html html/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.windowMasker track allGaps shortLabel All Gaps longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps group map visibility dense type bigBed 3 bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.allGaps.bb html html/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.allGaps track augustus shortLabel Augustus longLabel Augustus Gene Predictions group genes visibility pack color 180,0,0 type bigGenePred bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.augustus.bb html html/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.augustus track xenoRefGene shortLabel RefSeq mRNAs longLabel RefSeq mRNAs mapped to this assembly group rna visibility pack color 180,0,0 type bigGenePred bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.xenoRefGene.bb labelFields name,geneName,geneName2 defaultLabelFields geneName searchIndex name searchTrix ixIxx/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.xenoRefGene.ix html html/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.xenoRefGene ############################################################################## # GCF_000002845.2 - kinetoplastids - Leishmania braziliensis MHOM/BR/75/M2903 - taxId: 1295825 ############################################################################## track chainNetGCF_000002845.2 compositeTrack on shortLabel kinetoplastids Chain/Net longLabel kinetoplastids (2016-09-30), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno priority 100.1 color 0,0,0 altColor 100,50,0 type bed 3 sortOrder view=+ otherDb GCF_000002845.2 html html/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.chainNet track chainNetGCF_000002845.2Viewchain shortLabel Chain view chain visibility pack parent chainNetGCF_000002845.2 spectrum on track chainGCF_000002845.2 parent chainNetGCF_000002845.2Viewchain subGroups view=chain shortLabel kinetoplastids Chain longLabel kinetoplastids (2016-09-30) Chained Alignments type bigChain GCF_000002845.2 bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.chainGCF_000002845.2.bb linkDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.chainGCF_000002845.2Link.bb priority 1 track chainSynGCF_000002845.2 parent chainNetGCF_000002845.2Viewchain subGroups view=chain shortLabel kinetoplastids synChain longLabel kinetoplastids (2016-09-30) Syntenic Chained Alignments type bigChain GCF_000002845.2 bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.chainSynGCF_000002845.2.bb linkDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.chainSynGCF_000002845.2Link.bb priority 2 track chainRBestGCF_000002845.2 parent chainNetGCF_000002845.2Viewchain subGroups view=chain shortLabel kinetoplastids rbChain longLabel kinetoplastids (2016-09-30) Reciprocal Best Chained Alignments type bigChain GCF_000002845.2 bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.chainRBestGCF_000002845.2.bb linkDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.chainRBestGCF_000002845.2Link.bb priority 3 track chainLiftOverGCF_000002845.2 parent chainNetGCF_000002845.2Viewchain subGroups view=chain shortLabel kinetoplastids loChain longLabel kinetoplastids (2016-09-30) Lift Over Chained Alignments type bigChain GCF_000002845.2 bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.chainLiftOverGCF_000002845.2.bb linkDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.chainLiftOverGCF_000002845.2Link.bb priority 4 track mafNetGCF_000002845.2Viewnet shortLabel Net view net visibility full parent chainNetGCF_000002845.2 track netGCF_000002845.2 parent mafNetGCF_000002845.2Viewnet subGroups view=net shortLabel kinetoplastids net longLabel kinetoplastids (2016-09-30) Net Alignment type bigMaf bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.GCF_000002845.2.net.bb summary bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.GCF_000002845.2.net.summary.bb speciesOrder GCF_000002845.2 priority 5 track synNetGCF_000002845.2 parent mafNetGCF_000002845.2Viewnet subGroups view=net shortLabel kinetoplastids synNet longLabel kinetoplastids (2016-09-30) Syntenic Net Alignment type bigMaf bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.GCF_000002845.2.synNet.bb summary bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.GCF_000002845.2.synNet.summary.bb speciesOrder GCF_000002845.2 priority 6 track rbestNetGCF_000002845.2 parent mafNetGCF_000002845.2Viewnet subGroups view=net shortLabel kinetoplastids rbestNet longLabel kinetoplastids (2016-09-30) Reciprocal Best Net Alignment type bigMaf bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.GCF_000002845.2.rbestNet.bb summary bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.GCF_000002845.2.rbestNet.summary.bb speciesOrder GCF_000002845.2 priority 7 track liftOverNetGCF_000002845.2 parent mafNetGCF_000002845.2Viewnet subGroups view=net shortLabel kinetoplastids liftOverNet longLabel kinetoplastids (2016-09-30) Lift Over Net Alignment type bigMaf bigDataUrl bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.GCF_000002845.2.liftOverNet.bb summary bbi/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.GCF_000002845.2.liftOverNet.summary.bb speciesOrder GCF_000002845.2 priority 8