hub GCA_000468235.1 genome assembly shortLabel Legionella pneumophila (Leg01/16 2013 genbank) longLabel Legionella pneumophila (Leg01/16 2013 genbank)/Legionella pneumophila Leg01/16/GCA_000468235.1_Legionella_pneumophila_Leg01_16 genome assembly useOneFile on email hclawson@ucsc.edu descriptionUrl html/GCA_000468235.1_Legionella_pneumophila_Leg01_16.description.html genome GCA_000468235.1 taxId 1370127 groups groups.txt description Legionella pneumophila (Leg01/16 2013 genbank) twoBitPath GCA_000468235.1.2bit twoBitBptUrl GCA_000468235.1.2bit.bpt chromSizes GCA_000468235.1.chrom.sizes.txt chromAliasBb GCA_000468235.1.chromAlias.bb organism Legionella_pneumophila_Leg01_16 Sep. 2013 defaultPos AWQT01000066.1:16166-26166 scientificName Legionella pneumophila Leg01/16 htmlPath html/GCA_000468235.1_Legionella_pneumophila_Leg01_16.description.html blat dynablat-01.soe.ucsc.edu 4040 dynamic GCA/000/468/235/GCA_000468235.1 transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCA/000/468/235/GCA_000468235.1 isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCA/000/468/235/GCA_000468235.1 track assembly longLabel Assembly shortLabel Assembly visibility pack colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCA_000468235.1_Legionella_pneumophila_Leg01_16.assembly.bb type bigBed 6 html html/GCA_000468235.1_Legionella_pneumophila_Leg01_16.assembly searchIndex name searchTrix ixIxx/GCA_000468235.1_Legionella_pneumophila_Leg01_16.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: group map track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCA_000468235.1_Legionella_pneumophila_Leg01_16.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility full autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCA_000468235.1_Legionella_pneumophila_Leg01_16.gc5Base.bw html html/GCA_000468235.1_Legionella_pneumophila_Leg01_16.gc5Base track tanDups shortLabel Tandem Dups longLabel Paired identical sequences compositeTrack on visibility hide type bigBed 12 group map html html/GCA_000468235.1_Legionella_pneumophila_Leg01_16.tanDups track tandemDups parent tanDups on shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly bigDataUrl bbi/GCA_000468235.1_Legionella_pneumophila_Leg01_16.tandemDups.bb type bigBed 12 track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCA_000468235.1_Legionella_pneumophila_Leg01_16.simpleRepeat.bb html html/GCA_000468235.1_Legionella_pneumophila_Leg01_16.simpleRepeat track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility pack type bigBed 4 + html html/GCA_000468235.1_Legionella_pneumophila_Leg01_16.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCA_000468235.1_Legionella_pneumophila_Leg01_16.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCA_000468235.1_Legionella_pneumophila_Leg01_16.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCA_000468235.1_Legionella_pneumophila_Leg01_16.windowMasker.bb html html/GCA_000468235.1_Legionella_pneumophila_Leg01_16.windowMasker