# Assembly name: ASM61568v1 # Organism name: Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 = JCM 6985 (firmicutes) # Infraspecific name: strain=JCM 6985 # Taxid: 1423827 # BioSample: SAMD00008926 # BioProject: PRJDB645 # Submitter: The University of Tokyo # Date: 2014-03-31 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: BAMG01 # Assembly method: Newbler v. 2.8 # Genome coverage: 55x # Sequencing technology: Ion PGM # Relation to type material: assembly from type material # GenBank assembly accession: GCA_000615685.1 # RefSeq assembly accession: GCF_000615685.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000615705.1 GCF_000615705.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name BAMG01000123.1 unplaced-scaffold na na BAMG01000123.1 = NZ_BAMG01000123.1 Primary Assembly 518 na BAMG01000122.1 unplaced-scaffold na na BAMG01000122.1 = NZ_BAMG01000122.1 Primary Assembly 538 na BAMG01000121.1 unplaced-scaffold na na BAMG01000121.1 = NZ_BAMG01000121.1 Primary Assembly 550 na BAMG01000120.1 unplaced-scaffold na na BAMG01000120.1 = NZ_BAMG01000120.1 Primary Assembly 569 na BAMG01000119.1 unplaced-scaffold na na BAMG01000119.1 = NZ_BAMG01000119.1 Primary Assembly 603 na BAMG01000118.1 unplaced-scaffold na na BAMG01000118.1 = NZ_BAMG01000118.1 Primary Assembly 619 na BAMG01000117.1 unplaced-scaffold na na BAMG01000117.1 = NZ_BAMG01000117.1 Primary Assembly 662 na BAMG01000116.1 unplaced-scaffold na na BAMG01000116.1 = NZ_BAMG01000116.1 Primary Assembly 690 na BAMG01000115.1 unplaced-scaffold na na BAMG01000115.1 = NZ_BAMG01000115.1 Primary Assembly 731 na BAMG01000114.1 unplaced-scaffold na na BAMG01000114.1 = NZ_BAMG01000114.1 Primary Assembly 855 na BAMG01000113.1 unplaced-scaffold na na BAMG01000113.1 = NZ_BAMG01000113.1 Primary Assembly 883 na BAMG01000112.1 unplaced-scaffold na na BAMG01000112.1 = NZ_BAMG01000112.1 Primary Assembly 886 na BAMG01000111.1 unplaced-scaffold na na BAMG01000111.1 = NZ_BAMG01000111.1 Primary Assembly 906 na BAMG01000110.1 unplaced-scaffold na na BAMG01000110.1 = NZ_BAMG01000110.1 Primary Assembly 945 na BAMG01000109.1 unplaced-scaffold na na BAMG01000109.1 = NZ_BAMG01000109.1 Primary Assembly 1039 na BAMG01000108.1 unplaced-scaffold na na BAMG01000108.1 = NZ_BAMG01000108.1 Primary Assembly 1078 na BAMG01000107.1 unplaced-scaffold na na BAMG01000107.1 = NZ_BAMG01000107.1 Primary Assembly 1102 na BAMG01000106.1 unplaced-scaffold na na BAMG01000106.1 = NZ_BAMG01000106.1 Primary Assembly 1128 na BAMG01000105.1 unplaced-scaffold na na BAMG01000105.1 = NZ_BAMG01000105.1 Primary Assembly 1177 na BAMG01000104.1 unplaced-scaffold na na BAMG01000104.1 = NZ_BAMG01000104.1 Primary Assembly 1193 na BAMG01000103.1 unplaced-scaffold na na BAMG01000103.1 = NZ_BAMG01000103.1 Primary Assembly 1219 na BAMG01000102.1 unplaced-scaffold na na BAMG01000102.1 = NZ_BAMG01000102.1 Primary Assembly 1360 na BAMG01000101.1 unplaced-scaffold na na BAMG01000101.1 = NZ_BAMG01000101.1 Primary Assembly 1363 na BAMG01000100.1 unplaced-scaffold na na BAMG01000100.1 = NZ_BAMG01000100.1 Primary Assembly 1399 na BAMG01000099.1 unplaced-scaffold na na BAMG01000099.1 = NZ_BAMG01000099.1 Primary Assembly 1460 na BAMG01000098.1 unplaced-scaffold na na BAMG01000098.1 = NZ_BAMG01000098.1 Primary Assembly 1466 na BAMG01000097.1 unplaced-scaffold na na BAMG01000097.1 = NZ_BAMG01000097.1 Primary Assembly 1669 na BAMG01000096.1 unplaced-scaffold na na BAMG01000096.1 = NZ_BAMG01000096.1 Primary Assembly 1802 na BAMG01000095.1 unplaced-scaffold na na BAMG01000095.1 = NZ_BAMG01000095.1 Primary Assembly 1912 na BAMG01000094.1 unplaced-scaffold na na BAMG01000094.1 = NZ_BAMG01000094.1 Primary Assembly 1961 na BAMG01000093.1 unplaced-scaffold na na BAMG01000093.1 = NZ_BAMG01000093.1 Primary Assembly 1986 na BAMG01000092.1 unplaced-scaffold na na BAMG01000092.1 = NZ_BAMG01000092.1 Primary Assembly 2045 na BAMG01000091.1 unplaced-scaffold na na BAMG01000091.1 = NZ_BAMG01000091.1 Primary Assembly 2050 na BAMG01000090.1 unplaced-scaffold na na BAMG01000090.1 = NZ_BAMG01000090.1 Primary Assembly 2097 na BAMG01000089.1 unplaced-scaffold na na BAMG01000089.1 = NZ_BAMG01000089.1 Primary Assembly 2203 na BAMG01000088.1 unplaced-scaffold na na BAMG01000088.1 = NZ_BAMG01000088.1 Primary Assembly 2210 na BAMG01000087.1 unplaced-scaffold na na BAMG01000087.1 = NZ_BAMG01000087.1 Primary Assembly 2314 na BAMG01000086.1 unplaced-scaffold na na BAMG01000086.1 = NZ_BAMG01000086.1 Primary Assembly 2385 na BAMG01000085.1 unplaced-scaffold na na BAMG01000085.1 = NZ_BAMG01000085.1 Primary Assembly 2437 na BAMG01000084.1 unplaced-scaffold na na BAMG01000084.1 = NZ_BAMG01000084.1 Primary Assembly 2482 na BAMG01000083.1 unplaced-scaffold na na BAMG01000083.1 = NZ_BAMG01000083.1 Primary Assembly 2493 na BAMG01000082.1 unplaced-scaffold na na BAMG01000082.1 = NZ_BAMG01000082.1 Primary Assembly 2875 na BAMG01000081.1 unplaced-scaffold na na BAMG01000081.1 = NZ_BAMG01000081.1 Primary Assembly 3005 na BAMG01000080.1 unplaced-scaffold na na BAMG01000080.1 = NZ_BAMG01000080.1 Primary Assembly 3191 na BAMG01000079.1 unplaced-scaffold na na BAMG01000079.1 = NZ_BAMG01000079.1 Primary Assembly 3201 na BAMG01000078.1 unplaced-scaffold na na BAMG01000078.1 = NZ_BAMG01000078.1 Primary Assembly 3244 na BAMG01000077.1 unplaced-scaffold na na BAMG01000077.1 = NZ_BAMG01000077.1 Primary Assembly 3531 na BAMG01000076.1 unplaced-scaffold na na BAMG01000076.1 = NZ_BAMG01000076.1 Primary Assembly 3898 na BAMG01000075.1 unplaced-scaffold na na BAMG01000075.1 = NZ_BAMG01000075.1 Primary Assembly 3986 na BAMG01000074.1 unplaced-scaffold na na BAMG01000074.1 = NZ_BAMG01000074.1 Primary Assembly 3992 na BAMG01000073.1 unplaced-scaffold na na BAMG01000073.1 = NZ_BAMG01000073.1 Primary Assembly 4028 na BAMG01000072.1 unplaced-scaffold na na BAMG01000072.1 = NZ_BAMG01000072.1 Primary Assembly 4312 na BAMG01000071.1 unplaced-scaffold na na BAMG01000071.1 = NZ_BAMG01000071.1 Primary Assembly 4342 na BAMG01000070.1 unplaced-scaffold na na BAMG01000070.1 = NZ_BAMG01000070.1 Primary Assembly 4439 na BAMG01000069.1 unplaced-scaffold na na BAMG01000069.1 = NZ_BAMG01000069.1 Primary Assembly 4589 na BAMG01000068.1 unplaced-scaffold na na BAMG01000068.1 = NZ_BAMG01000068.1 Primary Assembly 4621 na BAMG01000067.1 unplaced-scaffold na na BAMG01000067.1 = NZ_BAMG01000067.1 Primary Assembly 4954 na BAMG01000066.1 unplaced-scaffold na na BAMG01000066.1 = NZ_BAMG01000066.1 Primary Assembly 4998 na BAMG01000065.1 unplaced-scaffold na na BAMG01000065.1 = NZ_BAMG01000065.1 Primary Assembly 5128 na BAMG01000064.1 unplaced-scaffold na na BAMG01000064.1 = NZ_BAMG01000064.1 Primary Assembly 5350 na BAMG01000063.1 unplaced-scaffold na na BAMG01000063.1 = NZ_BAMG01000063.1 Primary Assembly 5458 na BAMG01000062.1 unplaced-scaffold na na BAMG01000062.1 = NZ_BAMG01000062.1 Primary Assembly 5594 na BAMG01000061.1 unplaced-scaffold na na BAMG01000061.1 = NZ_BAMG01000061.1 Primary Assembly 5802 na BAMG01000060.1 unplaced-scaffold na na BAMG01000060.1 = NZ_BAMG01000060.1 Primary Assembly 6052 na BAMG01000059.1 unplaced-scaffold na na BAMG01000059.1 = NZ_BAMG01000059.1 Primary Assembly 6428 na BAMG01000058.1 unplaced-scaffold na na BAMG01000058.1 = NZ_BAMG01000058.1 Primary Assembly 7085 na BAMG01000057.1 unplaced-scaffold na na BAMG01000057.1 = NZ_BAMG01000057.1 Primary Assembly 7446 na BAMG01000056.1 unplaced-scaffold na na BAMG01000056.1 = NZ_BAMG01000056.1 Primary Assembly 7587 na BAMG01000055.1 unplaced-scaffold na na BAMG01000055.1 = NZ_BAMG01000055.1 Primary Assembly 7707 na BAMG01000054.1 unplaced-scaffold na na BAMG01000054.1 = NZ_BAMG01000054.1 Primary Assembly 8271 na BAMG01000053.1 unplaced-scaffold na na BAMG01000053.1 = NZ_BAMG01000053.1 Primary Assembly 8714 na BAMG01000052.1 unplaced-scaffold na na BAMG01000052.1 = NZ_BAMG01000052.1 Primary Assembly 9255 na BAMG01000051.1 unplaced-scaffold na na BAMG01000051.1 = NZ_BAMG01000051.1 Primary Assembly 9589 na BAMG01000050.1 unplaced-scaffold na na BAMG01000050.1 = NZ_BAMG01000050.1 Primary Assembly 9642 na BAMG01000049.1 unplaced-scaffold na na BAMG01000049.1 = NZ_BAMG01000049.1 Primary Assembly 10373 na BAMG01000048.1 unplaced-scaffold na na BAMG01000048.1 = NZ_BAMG01000048.1 Primary Assembly 11101 na BAMG01000047.1 unplaced-scaffold na na BAMG01000047.1 = NZ_BAMG01000047.1 Primary Assembly 11545 na BAMG01000046.1 unplaced-scaffold na na BAMG01000046.1 = NZ_BAMG01000046.1 Primary Assembly 11688 na BAMG01000045.1 unplaced-scaffold na na BAMG01000045.1 = NZ_BAMG01000045.1 Primary Assembly 11807 na BAMG01000044.1 unplaced-scaffold na na BAMG01000044.1 = NZ_BAMG01000044.1 Primary Assembly 12068 na BAMG01000043.1 unplaced-scaffold na na BAMG01000043.1 = NZ_BAMG01000043.1 Primary Assembly 12688 na BAMG01000042.1 unplaced-scaffold na na BAMG01000042.1 = NZ_BAMG01000042.1 Primary Assembly 12794 na BAMG01000041.1 unplaced-scaffold na na BAMG01000041.1 = NZ_BAMG01000041.1 Primary Assembly 12887 na BAMG01000040.1 unplaced-scaffold na na BAMG01000040.1 = NZ_BAMG01000040.1 Primary Assembly 13123 na BAMG01000039.1 unplaced-scaffold na na BAMG01000039.1 = NZ_BAMG01000039.1 Primary Assembly 13459 na BAMG01000038.1 unplaced-scaffold na na BAMG01000038.1 = NZ_BAMG01000038.1 Primary Assembly 13834 na BAMG01000037.1 unplaced-scaffold na na BAMG01000037.1 = NZ_BAMG01000037.1 Primary Assembly 14560 na BAMG01000036.1 unplaced-scaffold na na BAMG01000036.1 = NZ_BAMG01000036.1 Primary Assembly 15706 na BAMG01000035.1 unplaced-scaffold na na BAMG01000035.1 = NZ_BAMG01000035.1 Primary Assembly 17190 na BAMG01000034.1 unplaced-scaffold na na BAMG01000034.1 = NZ_BAMG01000034.1 Primary Assembly 17191 na BAMG01000033.1 unplaced-scaffold na na BAMG01000033.1 = NZ_BAMG01000033.1 Primary Assembly 17714 na BAMG01000032.1 unplaced-scaffold na na BAMG01000032.1 = NZ_BAMG01000032.1 Primary Assembly 18714 na BAMG01000031.1 unplaced-scaffold na na BAMG01000031.1 = NZ_BAMG01000031.1 Primary Assembly 19087 na BAMG01000030.1 unplaced-scaffold na na BAMG01000030.1 = NZ_BAMG01000030.1 Primary Assembly 20585 na BAMG01000029.1 unplaced-scaffold na na BAMG01000029.1 = NZ_BAMG01000029.1 Primary Assembly 21999 na BAMG01000028.1 unplaced-scaffold na na BAMG01000028.1 = NZ_BAMG01000028.1 Primary Assembly 23101 na BAMG01000027.1 unplaced-scaffold na na BAMG01000027.1 = NZ_BAMG01000027.1 Primary Assembly 24586 na BAMG01000026.1 unplaced-scaffold na na BAMG01000026.1 = NZ_BAMG01000026.1 Primary Assembly 24711 na BAMG01000025.1 unplaced-scaffold na na BAMG01000025.1 = NZ_BAMG01000025.1 Primary Assembly 25433 na BAMG01000024.1 unplaced-scaffold na na BAMG01000024.1 = NZ_BAMG01000024.1 Primary Assembly 27428 na BAMG01000023.1 unplaced-scaffold na na BAMG01000023.1 = NZ_BAMG01000023.1 Primary Assembly 33787 na BAMG01000022.1 unplaced-scaffold na na BAMG01000022.1 = NZ_BAMG01000022.1 Primary Assembly 34714 na BAMG01000021.1 unplaced-scaffold na na BAMG01000021.1 = NZ_BAMG01000021.1 Primary Assembly 36251 na BAMG01000020.1 unplaced-scaffold na na BAMG01000020.1 = NZ_BAMG01000020.1 Primary Assembly 37721 na BAMG01000019.1 unplaced-scaffold na na BAMG01000019.1 = NZ_BAMG01000019.1 Primary Assembly 37884 na BAMG01000018.1 unplaced-scaffold na na BAMG01000018.1 = NZ_BAMG01000018.1 Primary Assembly 40195 na BAMG01000017.1 unplaced-scaffold na na BAMG01000017.1 = NZ_BAMG01000017.1 Primary Assembly 41375 na BAMG01000016.1 unplaced-scaffold na na BAMG01000016.1 = NZ_BAMG01000016.1 Primary Assembly 47217 na BAMG01000015.1 unplaced-scaffold na na BAMG01000015.1 = NZ_BAMG01000015.1 Primary Assembly 49077 na BAMG01000014.1 unplaced-scaffold na na BAMG01000014.1 = NZ_BAMG01000014.1 Primary Assembly 52648 na BAMG01000013.1 unplaced-scaffold na na BAMG01000013.1 = NZ_BAMG01000013.1 Primary Assembly 55089 na BAMG01000012.1 unplaced-scaffold na na BAMG01000012.1 = NZ_BAMG01000012.1 Primary Assembly 58799 na BAMG01000011.1 unplaced-scaffold na na BAMG01000011.1 = NZ_BAMG01000011.1 Primary Assembly 61259 na BAMG01000010.1 unplaced-scaffold na na BAMG01000010.1 = NZ_BAMG01000010.1 Primary Assembly 62103 na BAMG01000009.1 unplaced-scaffold na na BAMG01000009.1 = NZ_BAMG01000009.1 Primary Assembly 67643 na BAMG01000008.1 unplaced-scaffold na na BAMG01000008.1 = NZ_BAMG01000008.1 Primary Assembly 68290 na BAMG01000007.1 unplaced-scaffold na na BAMG01000007.1 = NZ_BAMG01000007.1 Primary Assembly 69360 na BAMG01000006.1 unplaced-scaffold na na BAMG01000006.1 = NZ_BAMG01000006.1 Primary Assembly 74746 na BAMG01000005.1 unplaced-scaffold na na BAMG01000005.1 = NZ_BAMG01000005.1 Primary Assembly 95580 na BAMG01000004.1 unplaced-scaffold na na BAMG01000004.1 = NZ_BAMG01000004.1 Primary Assembly 112261 na BAMG01000003.1 unplaced-scaffold na na BAMG01000003.1 = NZ_BAMG01000003.1 Primary Assembly 118779 na BAMG01000002.1 unplaced-scaffold na na BAMG01000002.1 = NZ_BAMG01000002.1 Primary Assembly 137610 na BAMG01000001.1 unplaced-scaffold na na BAMG01000001.1 = NZ_BAMG01000001.1 Primary Assembly 187029 na