hub GCA_000845685.2 genome assembly shortLabel human betaherpesvirus 6A (U1102 1995 genbank) longLabel human betaherpesvirus 6A (U1102 1995 genbank)/Human betaherpesvirus 6A/GCA_000845685.2_ViralProj14462 genome assembly useOneFile on email hclawson@ucsc.edu descriptionUrl html/GCA_000845685.2_ViralProj14462.description.html genome GCA_000845685.2 taxId 32603 groups groups.txt description human betaherpesvirus 6A (U1102 1995 genbank) twoBitPath GCA_000845685.2.2bit twoBitBptUrl GCA_000845685.2.2bit.bpt chromSizes GCA_000845685.2.chrom.sizes.txt chromAliasBb GCA_000845685.2.chromAlias.bb organism ViralProj14462 Feb. 2018 defaultPos X83413.2:53126-63126 scientificName Human betaherpesvirus 6A htmlPath html/GCA_000845685.2_ViralProj14462.description.html blat dynablat-01.soe.ucsc.edu 4040 dynamic GCA/000/845/685/GCA_000845685.2 transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCA/000/845/685/GCA_000845685.2 isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCA/000/845/685/GCA_000845685.2 track assembly longLabel Assembly shortLabel Assembly visibility pack colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCA_000845685.2_ViralProj14462.assembly.bb type bigBed 6 html html/GCA_000845685.2_ViralProj14462.assembly searchIndex name searchTrix ixIxx/GCA_000845685.2_ViralProj14462.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: group map track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCA_000845685.2_ViralProj14462.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility full autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCA_000845685.2_ViralProj14462.gc5Base.bw html html/GCA_000845685.2_ViralProj14462.gc5Base track tanDups shortLabel Tandem Dups longLabel Paired identical sequences compositeTrack on visibility hide type bigBed 12 group map html html/GCA_000845685.2_ViralProj14462.tanDups track tandemDups parent tanDups on shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly bigDataUrl bbi/GCA_000845685.2_ViralProj14462.tandemDups.bb type bigBed 12 track repeatMasker shortLabel RepeatMasker longLabel RepeatMasker Repetitive Elements type bigRmsk 9 + visibility pack group varRep bigDataUrl bbi/GCA_000845685.2_ViralProj14462.rmsk.bb maxWindowToDraw 5000000 html html/GCA_000845685.2_ViralProj14462.repeatMasker track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCA_000845685.2_ViralProj14462.simpleRepeat.bb html html/GCA_000845685.2_ViralProj14462.simpleRepeat track ncbiGene longLabel Gene models submitted to NCBI shortLabel Gene models visibility pack color 0,80,150 altColor 150,80,0 colorByStrand 0,80,150 150,80,0 bigDataUrl bbi/GCA_000845685.2_ViralProj14462.ncbiGene.bb type bigGenePred html html/GCA_000845685.2_ViralProj14462.ncbiGene searchIndex name searchTrix ixIxx/GCA_000845685.2_ViralProj14462.ncbiGene.ix url https://www.ncbi.nlm.nih.gov/gene/?term=$$ urlLabel Entrez gene: labelFields geneName,geneName2 defaultLabelFields geneName2 group genes track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility pack type bigBed 4 + html html/GCA_000845685.2_ViralProj14462.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCA_000845685.2_ViralProj14462.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCA_000845685.2_ViralProj14462.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCA_000845685.2_ViralProj14462.windowMasker.bb html html/GCA_000845685.2_ViralProj14462.windowMasker