# Assembly name: ASM131133v1 # Organism name: Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM 8572 (firmicutes) # Infraspecific name: strain=JCM 8572 # Taxid: 1423828 # BioSample: SAMD00000473 # BioProject: PRJDB772 # Submitter: The University of Tokyo # Date: 2015-10-01 # Assembly type: na # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: BBAQ01 # Assembly method: Newbler v. 2.8 # Genome coverage: 47x # Sequencing technology: Ion PGM # Relation to type material: assembly from type material # Excluded from RefSeq: many frameshifted proteins # GenBank assembly accession: GCA_001311335.1 # RefSeq assembly accession: GCF_001311335.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_001311345.1 GCF_001311345.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name BBAQ01000001.1 unplaced-scaffold na na BBAQ01000001.1 = NZ_BBAQ01000001.1 Primary Assembly 129849 na BBAQ01000002.1 unplaced-scaffold na na BBAQ01000002.1 = NZ_BBAQ01000002.1 Primary Assembly 114086 na BBAQ01000003.1 unplaced-scaffold na na BBAQ01000003.1 = NZ_BBAQ01000003.1 Primary Assembly 105516 na BBAQ01000004.1 unplaced-scaffold na na BBAQ01000004.1 = NZ_BBAQ01000004.1 Primary Assembly 92256 na BBAQ01000005.1 unplaced-scaffold na na BBAQ01000005.1 = NZ_BBAQ01000005.1 Primary Assembly 73289 na BBAQ01000006.1 unplaced-scaffold na na BBAQ01000006.1 = NZ_BBAQ01000006.1 Primary Assembly 67906 na BBAQ01000007.1 unplaced-scaffold na na BBAQ01000007.1 = NZ_BBAQ01000007.1 Primary Assembly 67481 na BBAQ01000008.1 unplaced-scaffold na na BBAQ01000008.1 = NZ_BBAQ01000008.1 Primary Assembly 65549 na BBAQ01000009.1 unplaced-scaffold na na BBAQ01000009.1 = NZ_BBAQ01000009.1 Primary Assembly 64252 na BBAQ01000010.1 unplaced-scaffold na na BBAQ01000010.1 = NZ_BBAQ01000010.1 Primary Assembly 62652 na BBAQ01000011.1 unplaced-scaffold na na BBAQ01000011.1 = NZ_BBAQ01000011.1 Primary Assembly 60226 na BBAQ01000012.1 unplaced-scaffold na na BBAQ01000012.1 = NZ_BBAQ01000012.1 Primary Assembly 58619 na BBAQ01000013.1 unplaced-scaffold na na BBAQ01000013.1 = NZ_BBAQ01000013.1 Primary Assembly 54527 na BBAQ01000014.1 unplaced-scaffold na na BBAQ01000014.1 = NZ_BBAQ01000014.1 Primary Assembly 52180 na BBAQ01000015.1 unplaced-scaffold na na BBAQ01000015.1 = NZ_BBAQ01000015.1 Primary Assembly 51596 na BBAQ01000016.1 unplaced-scaffold na na BBAQ01000016.1 = NZ_BBAQ01000016.1 Primary Assembly 50541 na BBAQ01000017.1 unplaced-scaffold na na BBAQ01000017.1 = NZ_BBAQ01000017.1 Primary Assembly 47253 na BBAQ01000018.1 unplaced-scaffold na na BBAQ01000018.1 = NZ_BBAQ01000018.1 Primary Assembly 43706 na BBAQ01000019.1 unplaced-scaffold na na BBAQ01000019.1 = NZ_BBAQ01000019.1 Primary Assembly 41513 na BBAQ01000020.1 unplaced-scaffold na na BBAQ01000020.1 = NZ_BBAQ01000020.1 Primary Assembly 40214 na BBAQ01000021.1 unplaced-scaffold na na BBAQ01000021.1 = NZ_BBAQ01000021.1 Primary Assembly 36695 na BBAQ01000022.1 unplaced-scaffold na na BBAQ01000022.1 = NZ_BBAQ01000022.1 Primary Assembly 29690 na BBAQ01000023.1 unplaced-scaffold na na BBAQ01000023.1 = NZ_BBAQ01000023.1 Primary Assembly 29602 na BBAQ01000024.1 unplaced-scaffold na na BBAQ01000024.1 = NZ_BBAQ01000024.1 Primary Assembly 27910 na BBAQ01000025.1 unplaced-scaffold na na BBAQ01000025.1 = NZ_BBAQ01000025.1 Primary Assembly 26413 na BBAQ01000026.1 unplaced-scaffold na na BBAQ01000026.1 = NZ_BBAQ01000026.1 Primary Assembly 25663 na BBAQ01000027.1 unplaced-scaffold na na BBAQ01000027.1 = NZ_BBAQ01000027.1 Primary Assembly 24056 na BBAQ01000028.1 unplaced-scaffold na na BBAQ01000028.1 = NZ_BBAQ01000028.1 Primary Assembly 20505 na BBAQ01000029.1 unplaced-scaffold na na BBAQ01000029.1 = NZ_BBAQ01000029.1 Primary Assembly 20138 na BBAQ01000030.1 unplaced-scaffold na na BBAQ01000030.1 = NZ_BBAQ01000030.1 Primary Assembly 19975 na BBAQ01000031.1 unplaced-scaffold na na BBAQ01000031.1 = NZ_BBAQ01000031.1 Primary Assembly 19940 na BBAQ01000032.1 unplaced-scaffold na na BBAQ01000032.1 = NZ_BBAQ01000032.1 Primary Assembly 18347 na BBAQ01000033.1 unplaced-scaffold na na BBAQ01000033.1 = NZ_BBAQ01000033.1 Primary Assembly 16845 na BBAQ01000034.1 unplaced-scaffold na na BBAQ01000034.1 = NZ_BBAQ01000034.1 Primary Assembly 16646 na BBAQ01000035.1 unplaced-scaffold na na BBAQ01000035.1 = NZ_BBAQ01000035.1 Primary Assembly 15156 na BBAQ01000036.1 unplaced-scaffold na na BBAQ01000036.1 = NZ_BBAQ01000036.1 Primary Assembly 14911 na BBAQ01000037.1 unplaced-scaffold na na BBAQ01000037.1 = NZ_BBAQ01000037.1 Primary Assembly 14784 na BBAQ01000038.1 unplaced-scaffold na na BBAQ01000038.1 = NZ_BBAQ01000038.1 Primary Assembly 14446 na BBAQ01000039.1 unplaced-scaffold na na BBAQ01000039.1 = NZ_BBAQ01000039.1 Primary Assembly 13628 na BBAQ01000040.1 unplaced-scaffold na na BBAQ01000040.1 = NZ_BBAQ01000040.1 Primary Assembly 13248 na BBAQ01000041.1 unplaced-scaffold na na BBAQ01000041.1 = NZ_BBAQ01000041.1 Primary Assembly 12926 na BBAQ01000042.1 unplaced-scaffold na na BBAQ01000042.1 = NZ_BBAQ01000042.1 Primary Assembly 12547 na BBAQ01000043.1 unplaced-scaffold na na BBAQ01000043.1 = NZ_BBAQ01000043.1 Primary Assembly 12213 na BBAQ01000044.1 unplaced-scaffold na na BBAQ01000044.1 = NZ_BBAQ01000044.1 Primary Assembly 12111 na BBAQ01000045.1 unplaced-scaffold na na BBAQ01000045.1 = NZ_BBAQ01000045.1 Primary Assembly 11939 na BBAQ01000046.1 unplaced-scaffold na na BBAQ01000046.1 = NZ_BBAQ01000046.1 Primary Assembly 11703 na BBAQ01000047.1 unplaced-scaffold na na BBAQ01000047.1 = NZ_BBAQ01000047.1 Primary Assembly 11499 na BBAQ01000048.1 unplaced-scaffold na na BBAQ01000048.1 = NZ_BBAQ01000048.1 Primary Assembly 11126 na BBAQ01000049.1 unplaced-scaffold na na BBAQ01000049.1 = NZ_BBAQ01000049.1 Primary Assembly 10861 na BBAQ01000050.1 unplaced-scaffold na na BBAQ01000050.1 = NZ_BBAQ01000050.1 Primary Assembly 10272 na BBAQ01000051.1 unplaced-scaffold na na BBAQ01000051.1 = NZ_BBAQ01000051.1 Primary Assembly 10266 na BBAQ01000052.1 unplaced-scaffold na na BBAQ01000052.1 = NZ_BBAQ01000052.1 Primary Assembly 9964 na BBAQ01000053.1 unplaced-scaffold na na BBAQ01000053.1 = NZ_BBAQ01000053.1 Primary Assembly 9854 na BBAQ01000054.1 unplaced-scaffold na na BBAQ01000054.1 = NZ_BBAQ01000054.1 Primary Assembly 9346 na BBAQ01000055.1 unplaced-scaffold na na BBAQ01000055.1 = NZ_BBAQ01000055.1 Primary Assembly 9312 na BBAQ01000056.1 unplaced-scaffold na na BBAQ01000056.1 = NZ_BBAQ01000056.1 Primary Assembly 8828 na BBAQ01000057.1 unplaced-scaffold na na BBAQ01000057.1 = NZ_BBAQ01000057.1 Primary Assembly 8033 na BBAQ01000058.1 unplaced-scaffold na na BBAQ01000058.1 = NZ_BBAQ01000058.1 Primary Assembly 7525 na BBAQ01000059.1 unplaced-scaffold na na BBAQ01000059.1 = NZ_BBAQ01000059.1 Primary Assembly 7361 na BBAQ01000060.1 unplaced-scaffold na na BBAQ01000060.1 = NZ_BBAQ01000060.1 Primary Assembly 7057 na BBAQ01000061.1 unplaced-scaffold na na BBAQ01000061.1 = NZ_BBAQ01000061.1 Primary Assembly 6833 na BBAQ01000062.1 unplaced-scaffold na na BBAQ01000062.1 = NZ_BBAQ01000062.1 Primary Assembly 6556 na BBAQ01000063.1 unplaced-scaffold na na BBAQ01000063.1 = NZ_BBAQ01000063.1 Primary Assembly 6213 na BBAQ01000064.1 unplaced-scaffold na na BBAQ01000064.1 = NZ_BBAQ01000064.1 Primary Assembly 6199 na BBAQ01000065.1 unplaced-scaffold na na BBAQ01000065.1 = NZ_BBAQ01000065.1 Primary Assembly 6081 na BBAQ01000066.1 unplaced-scaffold na na BBAQ01000066.1 = NZ_BBAQ01000066.1 Primary Assembly 6005 na BBAQ01000067.1 unplaced-scaffold na na BBAQ01000067.1 = NZ_BBAQ01000067.1 Primary Assembly 4841 na BBAQ01000068.1 unplaced-scaffold na na BBAQ01000068.1 = NZ_BBAQ01000068.1 Primary Assembly 4671 na BBAQ01000069.1 unplaced-scaffold na na BBAQ01000069.1 = NZ_BBAQ01000069.1 Primary Assembly 3585 na BBAQ01000070.1 unplaced-scaffold na na BBAQ01000070.1 = NZ_BBAQ01000070.1 Primary Assembly 3513 na BBAQ01000071.1 unplaced-scaffold na na BBAQ01000071.1 = NZ_BBAQ01000071.1 Primary Assembly 3032 na BBAQ01000072.1 unplaced-scaffold na na BBAQ01000072.1 = NZ_BBAQ01000072.1 Primary Assembly 2808 na BBAQ01000073.1 unplaced-scaffold na na BBAQ01000073.1 = NZ_BBAQ01000073.1 Primary Assembly 2698 na BBAQ01000074.1 unplaced-scaffold na na BBAQ01000074.1 = NZ_BBAQ01000074.1 Primary Assembly 2376 na BBAQ01000075.1 unplaced-scaffold na na BBAQ01000075.1 = NZ_BBAQ01000075.1 Primary Assembly 2246 na BBAQ01000076.1 unplaced-scaffold na na BBAQ01000076.1 = NZ_BBAQ01000076.1 Primary Assembly 2072 na BBAQ01000077.1 unplaced-scaffold na na BBAQ01000077.1 = NZ_BBAQ01000077.1 Primary Assembly 2022 na BBAQ01000078.1 unplaced-scaffold na na BBAQ01000078.1 = NZ_BBAQ01000078.1 Primary Assembly 1932 na BBAQ01000079.1 unplaced-scaffold na na BBAQ01000079.1 = NZ_BBAQ01000079.1 Primary Assembly 1923 na BBAQ01000080.1 unplaced-scaffold na na BBAQ01000080.1 = NZ_BBAQ01000080.1 Primary Assembly 1892 na BBAQ01000081.1 unplaced-scaffold na na BBAQ01000081.1 = NZ_BBAQ01000081.1 Primary Assembly 1801 na BBAQ01000082.1 unplaced-scaffold na na BBAQ01000082.1 = NZ_BBAQ01000082.1 Primary Assembly 1467 na BBAQ01000083.1 unplaced-scaffold na na BBAQ01000083.1 = NZ_BBAQ01000083.1 Primary Assembly 1371 na BBAQ01000084.1 unplaced-scaffold na na BBAQ01000084.1 = NZ_BBAQ01000084.1 Primary Assembly 1311 na BBAQ01000085.1 unplaced-scaffold na na BBAQ01000085.1 = NZ_BBAQ01000085.1 Primary Assembly 1301 na BBAQ01000086.1 unplaced-scaffold na na BBAQ01000086.1 = NZ_BBAQ01000086.1 Primary Assembly 1214 na BBAQ01000087.1 unplaced-scaffold na na BBAQ01000087.1 = NZ_BBAQ01000087.1 Primary Assembly 1135 na BBAQ01000088.1 unplaced-scaffold na na BBAQ01000088.1 = NZ_BBAQ01000088.1 Primary Assembly 988 na BBAQ01000089.1 unplaced-scaffold na na BBAQ01000089.1 = NZ_BBAQ01000089.1 Primary Assembly 972 na BBAQ01000090.1 unplaced-scaffold na na BBAQ01000090.1 = NZ_BBAQ01000090.1 Primary Assembly 890 na BBAQ01000091.1 unplaced-scaffold na na BBAQ01000091.1 = NZ_BBAQ01000091.1 Primary Assembly 821 na BBAQ01000092.1 unplaced-scaffold na na BBAQ01000092.1 = NZ_BBAQ01000092.1 Primary Assembly 782 na BBAQ01000093.1 unplaced-scaffold na na BBAQ01000093.1 = NZ_BBAQ01000093.1 Primary Assembly 780 na BBAQ01000094.1 unplaced-scaffold na na BBAQ01000094.1 = NZ_BBAQ01000094.1 Primary Assembly 776 na BBAQ01000095.1 unplaced-scaffold na na BBAQ01000095.1 = NZ_BBAQ01000095.1 Primary Assembly 732 na BBAQ01000096.1 unplaced-scaffold na na BBAQ01000096.1 = NZ_BBAQ01000096.1 Primary Assembly 664 na BBAQ01000097.1 unplaced-scaffold na na BBAQ01000097.1 = NZ_BBAQ01000097.1 Primary Assembly 617 na BBAQ01000098.1 unplaced-scaffold na na BBAQ01000098.1 = NZ_BBAQ01000098.1 Primary Assembly 611 na BBAQ01000099.1 unplaced-scaffold na na BBAQ01000099.1 = NZ_BBAQ01000099.1 Primary Assembly 585 na BBAQ01000100.1 unplaced-scaffold na na BBAQ01000100.1 = NZ_BBAQ01000100.1 Primary Assembly 579 na BBAQ01000101.1 unplaced-scaffold na na BBAQ01000101.1 = NZ_BBAQ01000101.1 Primary Assembly 570 na BBAQ01000102.1 unplaced-scaffold na na BBAQ01000102.1 = NZ_BBAQ01000102.1 Primary Assembly 527 na BBAQ01000103.1 unplaced-scaffold na na BBAQ01000103.1 = NZ_BBAQ01000103.1 Primary Assembly 514 na BBAQ01000104.1 unplaced-scaffold na na BBAQ01000104.1 = NZ_BBAQ01000104.1 Primary Assembly 508 na